Multiple sequence alignment - TraesCS3A01G112600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G112600 chr3A 100.000 5991 0 0 797 6787 80088367 80094357 0.000000e+00 11064.0
1 TraesCS3A01G112600 chr3A 100.000 459 0 0 1 459 80087571 80088029 0.000000e+00 848.0
2 TraesCS3A01G112600 chr3A 91.270 126 11 0 2905 3030 566125030 566124905 9.050000e-39 172.0
3 TraesCS3A01G112600 chr3A 93.827 81 3 2 2569 2648 80090218 80090139 3.320000e-23 121.0
4 TraesCS3A01G112600 chr3A 94.118 51 2 1 1 50 110030145 110030195 7.300000e-10 76.8
5 TraesCS3A01G112600 chr3A 90.909 55 3 2 1 54 644820482 644820535 9.440000e-09 73.1
6 TraesCS3A01G112600 chr3B 92.051 2969 146 31 3394 6310 113917186 113920116 0.000000e+00 4093.0
7 TraesCS3A01G112600 chr3B 92.355 1805 93 24 797 2591 113914460 113916229 0.000000e+00 2527.0
8 TraesCS3A01G112600 chr3B 94.601 426 19 3 37 459 113913932 113914356 0.000000e+00 656.0
9 TraesCS3A01G112600 chr3B 94.737 399 10 4 3070 3468 113916844 113917231 1.620000e-170 610.0
10 TraesCS3A01G112600 chr3B 90.786 369 18 11 6421 6786 113920280 113920635 4.760000e-131 479.0
11 TraesCS3A01G112600 chr3B 93.043 230 13 2 2651 2877 113916617 113916846 3.920000e-87 333.0
12 TraesCS3A01G112600 chr3B 86.916 107 9 5 3291 3395 794105960 794105857 1.550000e-21 115.0
13 TraesCS3A01G112600 chr3B 87.879 66 3 5 1 63 784067313 784067250 9.440000e-09 73.1
14 TraesCS3A01G112600 chr3B 93.617 47 2 1 6305 6350 113920229 113920275 1.220000e-07 69.4
15 TraesCS3A01G112600 chr3B 93.333 45 2 1 5077 5120 260865199 260865243 1.580000e-06 65.8
16 TraesCS3A01G112600 chr3B 100.000 31 0 0 113 143 643984736 643984766 2.640000e-04 58.4
17 TraesCS3A01G112600 chr3D 92.133 2898 117 40 3394 6238 68079311 68076472 0.000000e+00 3986.0
18 TraesCS3A01G112600 chr3D 95.669 1016 35 3 1893 2902 68080678 68079666 0.000000e+00 1624.0
19 TraesCS3A01G112600 chr3D 92.207 1065 52 9 797 1856 68081716 68080678 0.000000e+00 1478.0
20 TraesCS3A01G112600 chr3D 95.567 406 14 3 3065 3468 68079669 68079266 0.000000e+00 647.0
21 TraesCS3A01G112600 chr3D 89.376 433 19 15 37 459 68082230 68081815 2.810000e-143 520.0
22 TraesCS3A01G112600 chr3D 94.603 315 14 3 6474 6787 68076330 68076018 1.020000e-132 484.0
23 TraesCS3A01G112600 chr3D 93.671 158 9 1 2907 3064 292035379 292035535 1.140000e-57 235.0
24 TraesCS3A01G112600 chr3D 87.429 175 17 4 6616 6787 549058932 549059104 5.370000e-46 196.0
25 TraesCS3A01G112600 chr3D 91.971 137 8 2 6312 6446 68076463 68076328 8.990000e-44 189.0
26 TraesCS3A01G112600 chr3D 90.323 124 12 0 2905 3028 422752294 422752417 5.450000e-36 163.0
27 TraesCS3A01G112600 chr3D 81.928 166 22 8 6616 6778 328700075 328700235 4.270000e-27 134.0
28 TraesCS3A01G112600 chr3D 92.593 81 4 2 2569 2648 68079919 68079998 1.550000e-21 115.0
29 TraesCS3A01G112600 chr3D 83.529 85 8 6 6618 6698 313282406 313282324 2.630000e-09 75.0
30 TraesCS3A01G112600 chr4A 94.969 159 8 0 2906 3064 688093051 688092893 4.060000e-62 250.0
31 TraesCS3A01G112600 chr4A 88.068 176 17 4 6613 6787 724482037 724482209 8.920000e-49 206.0
32 TraesCS3A01G112600 chr4A 84.404 109 12 5 6616 6723 29496117 29496221 1.200000e-17 102.0
33 TraesCS3A01G112600 chr4A 95.833 48 2 0 1 48 735025684 735025731 2.030000e-10 78.7
34 TraesCS3A01G112600 chr4A 87.302 63 5 3 1 63 691154740 691154681 1.220000e-07 69.4
35 TraesCS3A01G112600 chr6A 91.329 173 13 2 6616 6787 540607155 540606984 1.140000e-57 235.0
36 TraesCS3A01G112600 chr6A 91.860 86 4 1 2566 2648 39440961 39440876 4.300000e-22 117.0
37 TraesCS3A01G112600 chr6A 92.593 81 3 1 2568 2645 39440875 39440955 5.560000e-21 113.0
38 TraesCS3A01G112600 chr6A 88.462 78 6 3 3333 3410 581267243 581267169 2.610000e-14 91.6
39 TraesCS3A01G112600 chr6A 88.462 78 6 3 3333 3410 581310480 581310406 2.610000e-14 91.6
40 TraesCS3A01G112600 chr6A 90.909 55 3 2 1 54 231026090 231026143 9.440000e-09 73.1
41 TraesCS3A01G112600 chr6A 94.737 38 2 0 6616 6653 596335890 596335853 7.350000e-05 60.2
42 TraesCS3A01G112600 chr7D 90.857 175 12 4 6616 6787 69595090 69595263 1.470000e-56 231.0
43 TraesCS3A01G112600 chr7D 92.453 159 3 2 2906 3064 35603161 35603310 1.150000e-52 219.0
44 TraesCS3A01G112600 chr7D 85.714 175 14 9 6616 6787 170582440 170582274 2.520000e-39 174.0
45 TraesCS3A01G112600 chr7D 83.803 142 22 1 1264 1405 197183727 197183587 4.270000e-27 134.0
46 TraesCS3A01G112600 chr7D 88.679 53 4 1 1394 1446 501513308 501513358 5.680000e-06 63.9
47 TraesCS3A01G112600 chr6B 90.173 173 13 4 6616 6787 590564507 590564338 8.860000e-54 222.0
48 TraesCS3A01G112600 chr6B 93.069 101 5 2 3283 3383 553058980 553059078 5.490000e-31 147.0
49 TraesCS3A01G112600 chr6B 87.850 107 11 2 6616 6721 565206030 565206135 2.570000e-24 124.0
50 TraesCS3A01G112600 chr6B 91.176 68 5 1 2578 2645 151608224 151608290 2.610000e-14 91.6
51 TraesCS3A01G112600 chr1D 88.199 161 19 0 2904 3064 103682854 103682694 6.950000e-45 193.0
52 TraesCS3A01G112600 chr1D 86.957 161 21 0 2904 3064 283041385 283041225 1.500000e-41 182.0
53 TraesCS3A01G112600 chr1D 82.653 98 4 3 2968 3064 392020141 392020226 2.630000e-09 75.0
54 TraesCS3A01G112600 chr7B 87.195 164 21 0 2903 3066 228115214 228115051 3.230000e-43 187.0
55 TraesCS3A01G112600 chr7B 95.745 94 3 1 3290 3383 64413008 64413100 4.240000e-32 150.0
56 TraesCS3A01G112600 chr7B 82.883 111 13 4 3290 3398 695281415 695281309 2.020000e-15 95.3
57 TraesCS3A01G112600 chr7A 87.500 168 14 7 6616 6780 173414353 173414190 3.230000e-43 187.0
58 TraesCS3A01G112600 chr7A 87.578 161 20 0 2904 3064 466944559 466944399 3.230000e-43 187.0
59 TraesCS3A01G112600 chr7A 78.462 130 22 5 5208 5335 66456365 66456240 5.640000e-11 80.5
60 TraesCS3A01G112600 chr7A 91.071 56 3 2 1 55 42987543 42987597 2.630000e-09 75.0
61 TraesCS3A01G112600 chr5A 88.050 159 16 3 6623 6780 613931108 613931264 1.160000e-42 185.0
62 TraesCS3A01G112600 chr5B 86.747 166 14 6 6623 6787 606546831 606546989 1.950000e-40 178.0
63 TraesCS3A01G112600 chr5B 81.283 187 30 3 5147 5331 625966889 625966706 5.490000e-31 147.0
64 TraesCS3A01G112600 chr5B 100.000 29 0 0 5083 5111 634181294 634181322 3.000000e-03 54.7
65 TraesCS3A01G112600 chr4B 93.333 105 4 1 3290 3391 544445377 544445273 1.180000e-32 152.0
66 TraesCS3A01G112600 chr5D 81.283 187 30 3 5147 5331 502028900 502028717 5.490000e-31 147.0
67 TraesCS3A01G112600 chr5D 93.000 100 5 2 3291 3390 134780599 134780502 1.970000e-30 145.0
68 TraesCS3A01G112600 chr5D 93.814 97 5 1 3291 3386 491004698 491004602 1.970000e-30 145.0
69 TraesCS3A01G112600 chr5D 87.719 114 7 6 3290 3399 491004601 491004711 7.150000e-25 126.0
70 TraesCS3A01G112600 chr5D 83.099 71 9 3 5058 5125 423490602 423490672 2.040000e-05 62.1
71 TraesCS3A01G112600 chr5D 100.000 31 0 0 5081 5111 504994664 504994694 2.640000e-04 58.4
72 TraesCS3A01G112600 chr1B 94.681 94 4 1 3290 3383 26096835 26096927 1.970000e-30 145.0
73 TraesCS3A01G112600 chr1B 94.118 68 2 2 3333 3398 541468092 541468025 1.200000e-17 102.0
74 TraesCS3A01G112600 chr1B 85.333 75 6 5 1 70 674074400 674074326 9.440000e-09 73.1
75 TraesCS3A01G112600 chr2D 85.606 132 19 0 5656 5787 291862434 291862565 9.180000e-29 139.0
76 TraesCS3A01G112600 chr2D 88.750 80 4 4 2572 2646 181308287 181308366 7.250000e-15 93.5
77 TraesCS3A01G112600 chr2B 85.606 132 19 0 5656 5787 368312223 368312354 9.180000e-29 139.0
78 TraesCS3A01G112600 chr2B 92.405 79 4 2 2568 2645 357918917 357918840 2.000000e-20 111.0
79 TraesCS3A01G112600 chr2B 88.095 84 6 2 2564 2645 357918832 357918913 5.600000e-16 97.1
80 TraesCS3A01G112600 chr2B 100.000 29 0 0 5277 5305 798117778 798117806 3.000000e-03 54.7
81 TraesCS3A01G112600 chr2A 85.606 132 19 0 5656 5787 367588030 367588161 9.180000e-29 139.0
82 TraesCS3A01G112600 chr2A 85.577 104 10 3 3291 3389 748086308 748086411 3.350000e-18 104.0
83 TraesCS3A01G112600 chr1A 91.346 104 4 3 3282 3383 572016727 572016827 3.300000e-28 137.0
84 TraesCS3A01G112600 chr1A 92.593 54 3 1 1 53 303463304 303463251 7.300000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G112600 chr3A 80087571 80094357 6786 False 5956.000000 11064 100.000000 1 6787 2 chr3A.!!$F3 6786
1 TraesCS3A01G112600 chr3B 113913932 113920635 6703 False 1252.485714 4093 93.027143 37 6786 7 chr3B.!!$F3 6749
2 TraesCS3A01G112600 chr3D 68076018 68082230 6212 True 1275.428571 3986 93.075143 37 6787 7 chr3D.!!$R2 6750


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
987 1001 0.521867 CGAGCGAATTCCGTGTCGTA 60.522 55.0 0.0 0.0 39.95 3.43 F
1061 1077 0.037697 CTAGCTGTTGTGGCGGTGTA 60.038 55.0 0.0 0.0 34.52 2.90 F
2962 3336 0.108520 CCACCCGCTCTAACGCTTAA 60.109 55.0 0.0 0.0 0.00 1.85 F
4400 4831 0.034186 TCACCCATTAGCTTGCCCTG 60.034 55.0 0.0 0.0 0.00 4.45 F
4604 5036 0.033228 CAGCAGGGATTAGCGAGAGG 59.967 60.0 0.0 0.0 35.48 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2943 3317 0.108520 TTAAGCGTTAGAGCGGGTGG 60.109 55.0 0.00 0.0 43.0 4.61 R
3033 3407 0.108804 TCCCGCTTCAGACGCTTAAG 60.109 55.0 0.00 0.0 0.0 1.85 R
4405 4836 0.034186 CAGGGCAAGCTAATGGGTGA 60.034 55.0 0.00 0.0 0.0 4.02 R
5372 5834 0.543410 TAAAGGGGAGTCTGCCGTCA 60.543 55.0 6.02 0.0 0.0 4.35 R
6439 7045 0.678048 GAGGGTTGACATCACCAGGC 60.678 60.0 0.00 0.0 0.0 4.85 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.015367 TCCATTTTTATGACAAGTATTTTCGGA 57.985 29.630 0.00 0.00 0.00 4.55
27 28 9.072294 CCATTTTTATGACAAGTATTTTCGGAC 57.928 33.333 0.00 0.00 0.00 4.79
28 29 8.785101 CATTTTTATGACAAGTATTTTCGGACG 58.215 33.333 0.00 0.00 0.00 4.79
29 30 6.411630 TTTATGACAAGTATTTTCGGACGG 57.588 37.500 0.00 0.00 0.00 4.79
30 31 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
31 32 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
32 33 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
33 34 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
34 35 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
35 36 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
71 72 8.088365 TGACATATAACCTACTCCATTCATTCG 58.912 37.037 0.00 0.00 0.00 3.34
227 234 1.948145 CTTGGCATCCTTCTCAGCATC 59.052 52.381 0.00 0.00 0.00 3.91
299 309 1.374252 GCGTGAATCGACCAGTGGT 60.374 57.895 16.70 16.70 42.86 4.16
368 380 1.353091 CCCCCTTCTCTACATAGCCC 58.647 60.000 0.00 0.00 0.00 5.19
815 829 1.525941 GATTCGGTTCGTTTTGGGGA 58.474 50.000 0.00 0.00 0.00 4.81
816 830 2.089201 GATTCGGTTCGTTTTGGGGAT 58.911 47.619 0.00 0.00 0.00 3.85
817 831 1.984066 TTCGGTTCGTTTTGGGGATT 58.016 45.000 0.00 0.00 0.00 3.01
921 935 4.643387 GGGCACGAGCAGTTGGGT 62.643 66.667 7.26 0.00 44.61 4.51
933 947 2.284405 TTGGGTCGGAGGAGGGAC 60.284 66.667 0.00 0.00 0.00 4.46
985 999 2.987593 CGAGCGAATTCCGTGTCG 59.012 61.111 0.00 5.19 41.15 4.35
986 1000 1.800315 CGAGCGAATTCCGTGTCGT 60.800 57.895 0.00 0.00 39.95 4.34
987 1001 0.521867 CGAGCGAATTCCGTGTCGTA 60.522 55.000 0.00 0.00 39.95 3.43
988 1002 1.189403 GAGCGAATTCCGTGTCGTAG 58.811 55.000 0.00 0.00 39.46 3.51
989 1003 0.806868 AGCGAATTCCGTGTCGTAGA 59.193 50.000 0.00 0.00 39.46 2.59
990 1004 1.404391 AGCGAATTCCGTGTCGTAGAT 59.596 47.619 0.00 0.00 39.00 1.98
992 1006 2.215812 GCGAATTCCGTGTCGTAGATTC 59.784 50.000 0.00 0.00 39.00 2.52
995 1011 4.503007 CGAATTCCGTGTCGTAGATTCATT 59.497 41.667 0.00 0.00 40.67 2.57
1021 1037 2.464865 TGTTCGCGAAAATTTGGGTTG 58.535 42.857 25.24 0.00 0.00 3.77
1025 1041 0.598942 GCGAAAATTTGGGTTGGCGT 60.599 50.000 0.00 0.00 0.00 5.68
1034 1050 0.607112 TGGGTTGGCGTCGTTATGTA 59.393 50.000 0.00 0.00 0.00 2.29
1048 1064 3.425525 CGTTATGTATCGGTTGCTAGCTG 59.574 47.826 17.23 3.43 0.00 4.24
1061 1077 0.037697 CTAGCTGTTGTGGCGGTGTA 60.038 55.000 0.00 0.00 34.52 2.90
1259 1275 3.560278 GTTACATGGTCGCGCCGG 61.560 66.667 0.00 0.00 41.21 6.13
1350 1366 1.456892 TGACGATAGCCCGTGGGAT 60.457 57.895 9.72 4.63 43.49 3.85
1388 1404 6.390721 TCTAAGTGTAGTTGCTAGCTCTTTG 58.609 40.000 17.23 9.46 0.00 2.77
1471 1487 6.042777 TGAAATCTATCGTTTCTACCTGCAG 58.957 40.000 6.78 6.78 36.71 4.41
1523 1542 3.553904 TCATTTACATATGCTGCTGCCA 58.446 40.909 13.47 1.12 38.71 4.92
1628 1650 4.099266 GGCAGAACAAAATATGGCCATGTA 59.901 41.667 29.04 9.94 39.66 2.29
1658 1682 7.544622 TGTCACCTCAGTCAAATACATAGTAC 58.455 38.462 0.00 0.00 0.00 2.73
1662 1686 6.895756 ACCTCAGTCAAATACATAGTACCTCA 59.104 38.462 0.00 0.00 0.00 3.86
1710 1734 6.496565 ACAAATTGGAATTAACATGGACAGGA 59.503 34.615 0.00 0.00 0.00 3.86
1752 1776 9.832445 CCATATTCAAGTATGTAAAGTACCTGT 57.168 33.333 0.00 0.00 31.55 4.00
1773 1797 7.444183 ACCTGTTGATACCAATGATATAAACCG 59.556 37.037 0.00 0.00 34.39 4.44
1856 1885 2.158957 TCACTGTCGAGAGCAAAGGTTT 60.159 45.455 9.90 0.00 0.00 3.27
1863 1892 5.179368 TGTCGAGAGCAAAGGTTTAAATCAG 59.821 40.000 0.43 0.00 0.00 2.90
1872 1901 6.791775 GCAAAGGTTTAAATCAGAATTTTGCG 59.208 34.615 15.21 0.00 38.64 4.85
1906 1935 2.286425 CTCTGGGTGGGGGATGGT 60.286 66.667 0.00 0.00 0.00 3.55
1989 2018 7.279981 TCGTATCTGGTTCTGGTGAATTTAATG 59.720 37.037 0.00 0.00 34.40 1.90
2148 2183 3.492102 ATTGGGAGTTCGACATATGGG 57.508 47.619 7.80 0.00 0.00 4.00
2175 2210 1.600107 GCGAATCAGGGGTGTGGTA 59.400 57.895 0.00 0.00 0.00 3.25
2228 2263 3.368248 CCAACCAACCTCATGATGGATT 58.632 45.455 18.64 7.92 37.66 3.01
2275 2310 0.322277 CTGCTGTCCATGCACTCCTT 60.322 55.000 0.00 0.00 36.37 3.36
2287 2322 1.536662 ACTCCTTTCCTGAGGCCGT 60.537 57.895 0.00 0.00 36.71 5.68
2302 2337 1.338769 GGCCGTTGGAATAGTGTCTGT 60.339 52.381 0.00 0.00 0.00 3.41
2311 2346 7.415318 CGTTGGAATAGTGTCTGTCTACTGTAT 60.415 40.741 0.00 0.00 0.00 2.29
2315 2350 9.339850 GGAATAGTGTCTGTCTACTGTATTAGA 57.660 37.037 0.00 0.00 0.00 2.10
2382 2417 8.188139 GGAATATAAAACGACACAAATGACCAT 58.812 33.333 0.00 0.00 0.00 3.55
2598 2633 3.007635 CTCCGTCCCAAAATGTAAGACC 58.992 50.000 0.00 0.00 0.00 3.85
2765 3136 3.434641 GCTTAACGACTAGGGTCCAAAAC 59.565 47.826 0.00 0.00 39.15 2.43
2775 3146 4.724279 AGGGTCCAAAACAATCTGTAGT 57.276 40.909 0.00 0.00 0.00 2.73
2812 3183 3.056465 AGAACCTTCCTCAACAGATCGAC 60.056 47.826 0.00 0.00 0.00 4.20
2861 3232 4.344102 AGGTCAACTCAGTGCAGTAACTAA 59.656 41.667 0.00 0.00 0.00 2.24
2922 3296 9.162764 CTTATATAGCATGGTTTATAAAGCGGT 57.837 33.333 20.78 14.61 39.16 5.68
2925 3299 7.811117 ATAGCATGGTTTATAAAGCGGTAAA 57.189 32.000 19.50 8.04 39.16 2.01
2926 3300 6.131544 AGCATGGTTTATAAAGCGGTAAAG 57.868 37.500 19.50 8.73 39.16 1.85
2927 3301 4.738252 GCATGGTTTATAAAGCGGTAAAGC 59.262 41.667 19.50 13.39 39.16 3.51
2928 3302 4.603231 TGGTTTATAAAGCGGTAAAGCG 57.397 40.909 19.50 0.00 39.74 4.68
2929 3303 4.252073 TGGTTTATAAAGCGGTAAAGCGA 58.748 39.130 19.50 0.00 39.74 4.93
2930 3304 4.093261 TGGTTTATAAAGCGGTAAAGCGAC 59.907 41.667 19.50 0.00 39.74 5.19
2931 3305 4.494690 GGTTTATAAAGCGGTAAAGCGACC 60.495 45.833 11.36 0.00 43.00 4.79
2932 3306 2.685850 ATAAAGCGGTAAAGCGACCT 57.314 45.000 5.64 0.00 43.00 3.85
2933 3307 3.806625 ATAAAGCGGTAAAGCGACCTA 57.193 42.857 5.64 0.00 43.00 3.08
2934 3308 2.460757 AAAGCGGTAAAGCGACCTAA 57.539 45.000 5.64 0.00 43.00 2.69
2935 3309 2.460757 AAGCGGTAAAGCGACCTAAA 57.539 45.000 5.64 0.00 43.00 1.85
2936 3310 2.005971 AGCGGTAAAGCGACCTAAAG 57.994 50.000 5.64 0.00 43.00 1.85
2937 3311 0.372679 GCGGTAAAGCGACCTAAAGC 59.627 55.000 5.64 0.00 37.34 3.51
2938 3312 0.643820 CGGTAAAGCGACCTAAAGCG 59.356 55.000 0.00 0.00 37.34 4.68
2939 3313 1.733389 CGGTAAAGCGACCTAAAGCGA 60.733 52.381 0.00 0.00 37.34 4.93
2940 3314 1.925185 GGTAAAGCGACCTAAAGCGAG 59.075 52.381 0.00 0.00 36.47 5.03
2941 3315 1.323834 GTAAAGCGACCTAAAGCGAGC 59.676 52.381 0.00 0.00 38.61 5.03
2942 3316 0.320421 AAAGCGACCTAAAGCGAGCA 60.320 50.000 0.00 0.00 38.61 4.26
2943 3317 1.014564 AAGCGACCTAAAGCGAGCAC 61.015 55.000 0.00 0.00 38.61 4.40
2944 3318 2.453638 GCGACCTAAAGCGAGCACC 61.454 63.158 0.00 0.00 0.00 5.01
2945 3319 1.080093 CGACCTAAAGCGAGCACCA 60.080 57.895 0.00 0.00 0.00 4.17
2946 3320 1.352156 CGACCTAAAGCGAGCACCAC 61.352 60.000 0.00 0.00 0.00 4.16
2947 3321 1.003718 ACCTAAAGCGAGCACCACC 60.004 57.895 0.00 0.00 0.00 4.61
2948 3322 1.745489 CCTAAAGCGAGCACCACCC 60.745 63.158 0.00 0.00 0.00 4.61
2949 3323 2.047655 TAAAGCGAGCACCACCCG 60.048 61.111 0.00 0.00 0.00 5.28
2956 3330 2.663196 AGCACCACCCGCTCTAAC 59.337 61.111 0.00 0.00 33.35 2.34
2957 3331 2.813908 GCACCACCCGCTCTAACG 60.814 66.667 0.00 0.00 0.00 3.18
2958 3332 2.813908 CACCACCCGCTCTAACGC 60.814 66.667 0.00 0.00 0.00 4.84
2959 3333 2.995574 ACCACCCGCTCTAACGCT 60.996 61.111 0.00 0.00 0.00 5.07
2960 3334 2.264794 CCACCCGCTCTAACGCTT 59.735 61.111 0.00 0.00 0.00 4.68
2961 3335 1.252904 ACCACCCGCTCTAACGCTTA 61.253 55.000 0.00 0.00 0.00 3.09
2962 3336 0.108520 CCACCCGCTCTAACGCTTAA 60.109 55.000 0.00 0.00 0.00 1.85
2963 3337 1.278238 CACCCGCTCTAACGCTTAAG 58.722 55.000 0.00 0.00 0.00 1.85
2964 3338 0.459759 ACCCGCTCTAACGCTTAAGC 60.460 55.000 17.83 17.83 37.78 3.09
2975 3349 1.636871 GCTTAAGCGACGCCTAAGC 59.363 57.895 34.59 34.59 46.44 3.09
2999 3373 5.613358 CCTAAAGCGGGCAAATATCTAAG 57.387 43.478 0.00 0.00 0.00 2.18
3000 3374 4.455877 CCTAAAGCGGGCAAATATCTAAGG 59.544 45.833 0.00 0.00 0.00 2.69
3001 3375 1.897560 AGCGGGCAAATATCTAAGGC 58.102 50.000 0.00 0.00 0.00 4.35
3002 3376 0.517316 GCGGGCAAATATCTAAGGCG 59.483 55.000 0.00 0.00 0.00 5.52
3003 3377 0.517316 CGGGCAAATATCTAAGGCGC 59.483 55.000 0.00 0.00 0.00 6.53
3004 3378 1.878102 CGGGCAAATATCTAAGGCGCT 60.878 52.381 7.64 0.00 35.55 5.92
3005 3379 1.537202 GGGCAAATATCTAAGGCGCTG 59.463 52.381 7.64 0.00 34.95 5.18
3006 3380 1.068954 GGCAAATATCTAAGGCGCTGC 60.069 52.381 7.64 4.69 0.00 5.25
3043 3417 3.293311 TTAAGCGACACTTAAGCGTCT 57.707 42.857 18.77 5.78 44.21 4.18
3044 3418 1.419374 AAGCGACACTTAAGCGTCTG 58.581 50.000 18.77 13.79 36.62 3.51
3045 3419 0.596577 AGCGACACTTAAGCGTCTGA 59.403 50.000 18.77 0.00 35.78 3.27
3046 3420 1.000607 AGCGACACTTAAGCGTCTGAA 60.001 47.619 18.77 0.00 35.78 3.02
3047 3421 1.387084 GCGACACTTAAGCGTCTGAAG 59.613 52.381 18.77 6.90 0.00 3.02
3048 3422 1.387084 CGACACTTAAGCGTCTGAAGC 59.613 52.381 18.77 7.52 0.00 3.86
3049 3423 1.387084 GACACTTAAGCGTCTGAAGCG 59.613 52.381 14.96 0.00 40.04 4.68
3050 3424 0.716108 CACTTAAGCGTCTGAAGCGG 59.284 55.000 9.84 5.01 40.04 5.52
3051 3425 0.389948 ACTTAAGCGTCTGAAGCGGG 60.390 55.000 9.84 4.70 40.04 6.13
3052 3426 0.108804 CTTAAGCGTCTGAAGCGGGA 60.109 55.000 9.84 0.00 40.04 5.14
3053 3427 0.389426 TTAAGCGTCTGAAGCGGGAC 60.389 55.000 9.84 0.00 40.04 4.46
3148 3522 2.620585 GAGCTGTATCCCATTTTCAGGC 59.379 50.000 0.00 0.00 0.00 4.85
3335 3720 8.905660 ATAAGAGCGTTTAGATCACTACTAGA 57.094 34.615 0.00 0.00 37.82 2.43
3336 3721 7.811117 AAGAGCGTTTAGATCACTACTAGAT 57.189 36.000 0.00 0.00 37.82 1.98
3337 3722 7.429636 AGAGCGTTTAGATCACTACTAGATC 57.570 40.000 0.00 0.00 41.68 2.75
3338 3723 6.993308 AGAGCGTTTAGATCACTACTAGATCA 59.007 38.462 0.00 0.00 43.35 2.92
3339 3724 6.961576 AGCGTTTAGATCACTACTAGATCAC 58.038 40.000 0.00 0.00 43.35 3.06
3340 3725 6.768861 AGCGTTTAGATCACTACTAGATCACT 59.231 38.462 0.00 0.00 43.35 3.41
3341 3726 7.932491 AGCGTTTAGATCACTACTAGATCACTA 59.068 37.037 0.00 0.00 43.35 2.74
3342 3727 8.011106 GCGTTTAGATCACTACTAGATCACTAC 58.989 40.741 0.00 0.62 43.35 2.73
3343 3728 9.263538 CGTTTAGATCACTACTAGATCACTACT 57.736 37.037 0.00 0.00 43.35 2.57
3417 3802 7.591006 AAAATTAAGCTGTCATGCATTTCTG 57.409 32.000 0.00 0.00 34.99 3.02
3761 4192 5.165911 CATCGCTTATGCTGATGAAACTT 57.834 39.130 20.43 0.00 44.65 2.66
3779 4210 7.758495 TGAAACTTTCGCTTTCTTTTTACTCT 58.242 30.769 0.00 0.00 0.00 3.24
3802 4233 5.288804 TGCTGATAGAAAGCCAAAAACAAC 58.711 37.500 0.00 0.00 40.06 3.32
3803 4234 5.068987 TGCTGATAGAAAGCCAAAAACAACT 59.931 36.000 0.00 0.00 40.06 3.16
3854 4285 4.811555 TGTCATCGTGACCTTTTTCTTG 57.188 40.909 13.24 0.00 46.40 3.02
4002 4433 8.844441 TTATTTATAGTTTTATGCACCAACGC 57.156 30.769 0.00 0.00 0.00 4.84
4019 4450 1.290955 GCTTTGCAATGCCAGCTCA 59.709 52.632 23.06 0.00 33.01 4.26
4108 4539 4.214971 GCATGACATATTTGGGTAGCTCTG 59.785 45.833 0.00 0.00 0.00 3.35
4256 4687 5.191722 TCTTGTAGTAAATGCCTGGGATTCT 59.808 40.000 14.12 10.17 0.00 2.40
4319 4750 6.892658 AAGCTTGTTACAATTATGGACACA 57.107 33.333 0.00 0.00 0.00 3.72
4335 4766 3.456277 GGACACATGACCCTATCCTTTCT 59.544 47.826 0.00 0.00 0.00 2.52
4336 4767 4.654262 GGACACATGACCCTATCCTTTCTA 59.346 45.833 0.00 0.00 0.00 2.10
4337 4768 5.130477 GGACACATGACCCTATCCTTTCTAA 59.870 44.000 0.00 0.00 0.00 2.10
4344 4775 9.799106 CATGACCCTATCCTTTCTAATAATTGT 57.201 33.333 0.00 0.00 0.00 2.71
4390 4821 4.849310 GCCGCCGCTCACCCATTA 62.849 66.667 0.00 0.00 0.00 1.90
4391 4822 2.588877 CCGCCGCTCACCCATTAG 60.589 66.667 0.00 0.00 0.00 1.73
4392 4823 3.272334 CGCCGCTCACCCATTAGC 61.272 66.667 0.00 0.00 35.33 3.09
4393 4824 2.190578 GCCGCTCACCCATTAGCT 59.809 61.111 0.00 0.00 36.56 3.32
4394 4825 1.452108 GCCGCTCACCCATTAGCTT 60.452 57.895 0.00 0.00 36.56 3.74
4395 4826 1.718757 GCCGCTCACCCATTAGCTTG 61.719 60.000 0.00 0.00 36.56 4.01
4396 4827 1.718757 CCGCTCACCCATTAGCTTGC 61.719 60.000 0.00 0.00 36.56 4.01
4397 4828 1.718757 CGCTCACCCATTAGCTTGCC 61.719 60.000 0.00 0.00 36.56 4.52
4398 4829 1.387295 GCTCACCCATTAGCTTGCCC 61.387 60.000 0.00 0.00 35.80 5.36
4399 4830 0.257039 CTCACCCATTAGCTTGCCCT 59.743 55.000 0.00 0.00 0.00 5.19
4400 4831 0.034186 TCACCCATTAGCTTGCCCTG 60.034 55.000 0.00 0.00 0.00 4.45
4401 4832 1.380380 ACCCATTAGCTTGCCCTGC 60.380 57.895 0.00 0.00 0.00 4.85
4402 4833 1.076485 CCCATTAGCTTGCCCTGCT 60.076 57.895 0.00 0.00 43.79 4.24
4403 4834 1.389609 CCCATTAGCTTGCCCTGCTG 61.390 60.000 0.00 0.00 41.32 4.41
4404 4835 1.436336 CATTAGCTTGCCCTGCTGC 59.564 57.895 0.00 0.00 41.32 5.25
4405 4836 1.035932 CATTAGCTTGCCCTGCTGCT 61.036 55.000 0.00 10.69 41.32 4.24
4406 4837 0.750911 ATTAGCTTGCCCTGCTGCTC 60.751 55.000 0.00 0.00 41.32 4.26
4407 4838 2.128290 TTAGCTTGCCCTGCTGCTCA 62.128 55.000 0.00 0.00 41.32 4.26
4528 4959 0.105039 ATAAGGCACTGACCTAGCGC 59.895 55.000 0.00 0.00 39.93 5.92
4554 4985 4.638865 TCGCTTGCTAAGTGATACACTCTA 59.361 41.667 4.88 0.85 44.62 2.43
4604 5036 0.033228 CAGCAGGGATTAGCGAGAGG 59.967 60.000 0.00 0.00 35.48 3.69
4646 5078 6.905736 TGGGTTATTACATGAGATAAAGGCA 58.094 36.000 0.00 0.00 0.00 4.75
4687 5119 2.577563 TCAAGAGGATGAGGGAATTGCA 59.422 45.455 0.00 0.00 0.00 4.08
4691 5123 3.011032 AGAGGATGAGGGAATTGCAACTT 59.989 43.478 0.00 0.00 0.00 2.66
4693 5125 3.091545 GGATGAGGGAATTGCAACTTCA 58.908 45.455 0.00 1.60 0.00 3.02
4748 5180 3.184379 CGGCTATCGTCAACCAACATATG 59.816 47.826 0.00 0.00 0.00 1.78
4792 5232 2.158097 TGCCCTTATCCCTCTGCTATCT 60.158 50.000 0.00 0.00 0.00 1.98
4902 5342 2.632377 TCTTGCCTAATCGCCTTGAAG 58.368 47.619 0.00 0.00 0.00 3.02
4905 5345 1.004277 TGCCTAATCGCCTTGAAGGTT 59.996 47.619 13.58 1.87 37.80 3.50
4911 5351 5.467063 CCTAATCGCCTTGAAGGTTATTCTC 59.533 44.000 13.58 0.00 37.80 2.87
5059 5507 3.065371 AGACTTGAAAAAGCCTTGACACG 59.935 43.478 0.00 0.00 0.00 4.49
5372 5834 2.613691 GAAACCACGACGTACCATCAT 58.386 47.619 0.00 0.00 0.00 2.45
5418 5880 4.477536 AGAGATACTTGAGGCCTATGGA 57.522 45.455 4.42 0.00 0.00 3.41
5429 5891 2.988859 AGGCCTATGGATTTGATAGCCA 59.011 45.455 1.29 0.00 35.91 4.75
5472 5938 5.128008 GTCCCTCAGTTTACTTCTGCTATCT 59.872 44.000 0.00 0.00 33.48 1.98
5478 5944 5.871524 CAGTTTACTTCTGCTATCTTGCTCA 59.128 40.000 0.00 0.00 0.00 4.26
5499 5965 7.040478 TGCTCATTCAACATATTAATGGCCTAC 60.040 37.037 3.32 0.00 37.43 3.18
5500 5966 7.040478 GCTCATTCAACATATTAATGGCCTACA 60.040 37.037 3.32 0.00 37.43 2.74
5534 6000 8.478775 TCTCTCTATAGCCTATGCAAGTTTTA 57.521 34.615 0.00 0.00 41.13 1.52
5537 6003 9.547753 TCTCTATAGCCTATGCAAGTTTTAAAG 57.452 33.333 0.00 0.00 41.13 1.85
5561 6029 6.874134 AGTGTGAGTGATATTACACAGAAACC 59.126 38.462 8.77 0.00 44.30 3.27
5576 6044 2.792749 GAAACCGTGTTGTGTTTCCAG 58.207 47.619 4.24 0.00 42.75 3.86
5587 6055 2.158769 TGTGTTTCCAGTCACTCTGCAT 60.159 45.455 0.00 0.00 42.38 3.96
5588 6056 2.225019 GTGTTTCCAGTCACTCTGCATG 59.775 50.000 0.00 0.00 42.38 4.06
5681 6149 1.278985 CTGCTGTGTGATCCTAACCCA 59.721 52.381 0.00 0.00 0.00 4.51
5858 6326 9.391006 TGTTTGTAACTAAAATGACTGAACTCT 57.609 29.630 0.00 0.00 0.00 3.24
5939 6407 1.002868 GCTCTGTCATGGCCTGTGT 60.003 57.895 3.32 0.00 0.00 3.72
5943 6411 1.550524 TCTGTCATGGCCTGTGTCTAC 59.449 52.381 3.32 0.00 0.00 2.59
5962 6430 3.577649 ACACTGTCTGTATCTGGAACG 57.422 47.619 0.00 0.00 0.00 3.95
5988 6456 5.804692 ACATTTTGTAACGTCTTGTGTGA 57.195 34.783 0.00 0.00 0.00 3.58
6077 6548 9.057089 AGTTGAATGGTGTAGAAGTTCTAAAAG 57.943 33.333 14.20 0.00 29.58 2.27
6185 6662 8.938906 TCCGTAATAAGTTGAACACTAATTTCC 58.061 33.333 0.00 0.00 32.94 3.13
6204 6681 3.884895 TCCATGTGGCTATAGTTGGTTG 58.115 45.455 0.84 0.00 34.44 3.77
6212 6689 5.122396 GTGGCTATAGTTGGTTGAGTTGAAG 59.878 44.000 0.84 0.00 0.00 3.02
6221 6698 3.149196 GGTTGAGTTGAAGCAAGGATGA 58.851 45.455 0.00 0.00 0.00 2.92
6241 6718 8.076178 AGGATGAACAAGAAATTTGTTTAGTCG 58.924 33.333 6.71 0.00 42.11 4.18
6242 6719 7.860872 GGATGAACAAGAAATTTGTTTAGTCGT 59.139 33.333 6.71 0.00 42.11 4.34
6253 6732 4.585955 TGTTTAGTCGTCTGAGCTTCTT 57.414 40.909 0.00 0.00 0.00 2.52
6255 6734 4.745125 TGTTTAGTCGTCTGAGCTTCTTTG 59.255 41.667 0.00 0.00 0.00 2.77
6341 6945 4.469657 ACAATGCCCTTAACAAAGAGTCA 58.530 39.130 0.00 0.00 0.00 3.41
6393 6999 0.465460 TTTGGAAGAGTTGCTGCCGT 60.465 50.000 0.00 0.00 46.61 5.68
6410 7016 1.336517 CCGTGAAAGTCGGCAGAAGTA 60.337 52.381 0.00 0.00 41.48 2.24
6413 7019 3.391049 GTGAAAGTCGGCAGAAGTACTT 58.609 45.455 8.13 8.13 33.72 2.24
6414 7020 3.184581 GTGAAAGTCGGCAGAAGTACTTG 59.815 47.826 14.14 0.84 32.69 3.16
6459 7065 0.035056 CCTGGTGATGTCAACCCTCC 60.035 60.000 0.00 0.00 31.06 4.30
6469 7075 0.620556 TCAACCCTCCTCATTGCTCC 59.379 55.000 0.00 0.00 0.00 4.70
6470 7076 0.745845 CAACCCTCCTCATTGCTCCG 60.746 60.000 0.00 0.00 0.00 4.63
6471 7077 1.201429 AACCCTCCTCATTGCTCCGT 61.201 55.000 0.00 0.00 0.00 4.69
6472 7078 1.144936 CCCTCCTCATTGCTCCGTC 59.855 63.158 0.00 0.00 0.00 4.79
6528 7134 5.394115 CCTTATTGCACTAACATTTCACCCC 60.394 44.000 0.00 0.00 0.00 4.95
6567 7173 6.153170 ACCTGAAAATATGTGTCATGCATGAA 59.847 34.615 30.24 16.19 38.75 2.57
6669 7275 6.619801 ACACCTGATAGCCGATTTTATTTC 57.380 37.500 0.00 0.00 0.00 2.17
6714 7322 7.667635 TCAAAACTTCCAAAACTTTTTCCCAAT 59.332 29.630 0.00 0.00 0.00 3.16
6742 7350 1.335810 AGCTGTCGTTTCTGTCGTACA 59.664 47.619 0.00 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.015367 TCCGAAAATACTTGTCATAAAAATGGA 57.985 29.630 0.00 0.00 0.00 3.41
1 2 9.072294 GTCCGAAAATACTTGTCATAAAAATGG 57.928 33.333 0.00 0.00 0.00 3.16
2 3 8.785101 CGTCCGAAAATACTTGTCATAAAAATG 58.215 33.333 0.00 0.00 0.00 2.32
3 4 7.966204 CCGTCCGAAAATACTTGTCATAAAAAT 59.034 33.333 0.00 0.00 0.00 1.82
4 5 7.172875 TCCGTCCGAAAATACTTGTCATAAAAA 59.827 33.333 0.00 0.00 0.00 1.94
5 6 6.649973 TCCGTCCGAAAATACTTGTCATAAAA 59.350 34.615 0.00 0.00 0.00 1.52
6 7 6.164876 TCCGTCCGAAAATACTTGTCATAAA 58.835 36.000 0.00 0.00 0.00 1.40
7 8 5.722263 TCCGTCCGAAAATACTTGTCATAA 58.278 37.500 0.00 0.00 0.00 1.90
8 9 5.327616 TCCGTCCGAAAATACTTGTCATA 57.672 39.130 0.00 0.00 0.00 2.15
9 10 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
10 11 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
11 12 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
12 13 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
13 14 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
14 15 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
15 16 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
16 17 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
17 18 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
18 19 1.856629 TACTCCCTCCGTCCGAAAAT 58.143 50.000 0.00 0.00 0.00 1.82
19 20 1.856629 ATACTCCCTCCGTCCGAAAA 58.143 50.000 0.00 0.00 0.00 2.29
20 21 2.734755 TATACTCCCTCCGTCCGAAA 57.265 50.000 0.00 0.00 0.00 3.46
21 22 2.965671 ATATACTCCCTCCGTCCGAA 57.034 50.000 0.00 0.00 0.00 4.30
22 23 2.965671 AATATACTCCCTCCGTCCGA 57.034 50.000 0.00 0.00 0.00 4.55
23 24 5.184479 TCATAAAATATACTCCCTCCGTCCG 59.816 44.000 0.00 0.00 0.00 4.79
24 25 6.014840 TGTCATAAAATATACTCCCTCCGTCC 60.015 42.308 0.00 0.00 0.00 4.79
25 26 6.989659 TGTCATAAAATATACTCCCTCCGTC 58.010 40.000 0.00 0.00 0.00 4.79
26 27 6.989155 TGTCATAAAATATACTCCCTCCGT 57.011 37.500 0.00 0.00 0.00 4.69
178 182 7.807977 AATATCGCACAAAATCATACTCCTT 57.192 32.000 0.00 0.00 0.00 3.36
299 309 0.392706 AGTCAGCGATGACAACACCA 59.607 50.000 32.88 0.00 41.02 4.17
822 836 3.251245 CGAATCGAGAGCTCTAGCCTAAA 59.749 47.826 18.25 0.00 43.38 1.85
920 934 0.179108 CAAATCGTCCCTCCTCCGAC 60.179 60.000 0.00 0.00 32.86 4.79
921 935 0.323999 TCAAATCGTCCCTCCTCCGA 60.324 55.000 0.00 0.00 34.79 4.55
933 947 2.697425 CGTGCTCGGCTCAAATCG 59.303 61.111 0.00 0.00 0.00 3.34
985 999 4.606232 CGCGAACATCGGAAATGAATCTAC 60.606 45.833 0.00 0.00 40.84 2.59
986 1000 3.489416 CGCGAACATCGGAAATGAATCTA 59.511 43.478 0.00 0.00 40.84 1.98
987 1001 2.285220 CGCGAACATCGGAAATGAATCT 59.715 45.455 0.00 0.00 40.84 2.40
988 1002 2.284150 TCGCGAACATCGGAAATGAATC 59.716 45.455 6.20 0.00 40.84 2.52
989 1003 2.276201 TCGCGAACATCGGAAATGAAT 58.724 42.857 6.20 0.00 40.84 2.57
990 1004 1.715993 TCGCGAACATCGGAAATGAA 58.284 45.000 6.20 0.00 40.84 2.57
992 1006 2.519002 TTTCGCGAACATCGGAAATG 57.481 45.000 23.33 0.00 40.84 2.32
995 1011 3.230355 CAAATTTTCGCGAACATCGGAA 58.770 40.909 23.33 12.59 40.84 4.30
1021 1037 1.519758 CAACCGATACATAACGACGCC 59.480 52.381 0.00 0.00 0.00 5.68
1025 1041 3.317149 AGCTAGCAACCGATACATAACGA 59.683 43.478 18.83 0.00 0.00 3.85
1034 1050 1.442769 CACAACAGCTAGCAACCGAT 58.557 50.000 18.83 0.00 0.00 4.18
1048 1064 0.531090 TGTGAGTACACCGCCACAAC 60.531 55.000 0.00 0.00 45.40 3.32
1079 1095 3.254060 TCCTCGAAATTCTCTGCGAAAG 58.746 45.455 0.00 0.00 34.79 2.62
1259 1275 4.281941 ACATTGAAGAGGAAAAGAAAGGGC 59.718 41.667 0.00 0.00 0.00 5.19
1350 1366 6.952358 ACTACACTTAGATCAACTAACCTCCA 59.048 38.462 0.00 0.00 36.33 3.86
1388 1404 6.545298 AGCAAGGAAATTCTAGGACATCATTC 59.455 38.462 0.00 0.00 0.00 2.67
1471 1487 3.433615 GCTTACACACATGAGACCTCAAC 59.566 47.826 0.00 0.00 43.58 3.18
1523 1542 5.996644 TGGTATTAATCTTCCGTCACCAAT 58.003 37.500 0.00 0.00 32.10 3.16
1628 1650 6.119536 TGTATTTGACTGAGGTGACAAGTTT 58.880 36.000 0.00 0.00 30.54 2.66
1658 1682 1.066002 CCACTGTGTTTGCTTGTGAGG 59.934 52.381 7.08 0.00 0.00 3.86
1662 1686 4.400884 TGATTTACCACTGTGTTTGCTTGT 59.599 37.500 7.08 0.00 0.00 3.16
1702 1726 4.007581 TGAGGGATATTTCTCCTGTCCA 57.992 45.455 0.00 0.00 35.50 4.02
1710 1734 9.750783 CTTGAATATGGAATGAGGGATATTTCT 57.249 33.333 0.00 0.00 0.00 2.52
1789 1818 7.041107 CCAATTTCGAAATGGTGGTGATATTT 58.959 34.615 24.42 6.19 0.00 1.40
1790 1819 6.154363 ACCAATTTCGAAATGGTGGTGATATT 59.846 34.615 32.10 15.97 37.83 1.28
1792 1821 5.013547 ACCAATTTCGAAATGGTGGTGATA 58.986 37.500 32.10 3.71 37.83 2.15
1793 1822 3.831911 ACCAATTTCGAAATGGTGGTGAT 59.168 39.130 32.10 17.05 37.83 3.06
1794 1823 3.226777 ACCAATTTCGAAATGGTGGTGA 58.773 40.909 32.10 4.87 37.83 4.02
1795 1824 3.316283 CACCAATTTCGAAATGGTGGTG 58.684 45.455 36.65 36.65 44.39 4.17
1796 1825 2.288763 GCACCAATTTCGAAATGGTGGT 60.289 45.455 38.34 34.58 41.96 4.16
1797 1826 2.288702 TGCACCAATTTCGAAATGGTGG 60.289 45.455 38.34 34.15 41.96 4.61
1798 1827 3.023946 TGCACCAATTTCGAAATGGTG 57.976 42.857 36.64 36.64 43.10 4.17
1799 1828 3.742433 TTGCACCAATTTCGAAATGGT 57.258 38.095 26.07 26.07 33.24 3.55
1856 1885 4.493547 CCTTGGCGCAAAATTCTGATTTA 58.506 39.130 10.83 0.00 34.44 1.40
1863 1892 2.001872 CATTCCCTTGGCGCAAAATTC 58.998 47.619 10.83 0.00 0.00 2.17
1872 1901 1.139853 AGAGACGATCATTCCCTTGGC 59.860 52.381 0.00 0.00 0.00 4.52
1906 1935 1.295357 CTTAATCACACGCGCCACCA 61.295 55.000 5.73 0.00 0.00 4.17
2005 2034 0.532573 ACCTCATTCGTCTGCATCGT 59.467 50.000 10.37 0.00 0.00 3.73
2097 2132 4.630505 CAGGAGATATGCAGATTGGAATCG 59.369 45.833 0.00 0.00 40.35 3.34
2148 2183 1.233019 CCCTGATTCGCCACATCATC 58.767 55.000 0.00 0.00 30.15 2.92
2175 2210 1.953559 CATCCCCATTTCGATGTCGT 58.046 50.000 2.04 0.00 40.80 4.34
2228 2263 4.647611 ACGACAAAATACAACATCAGGGA 58.352 39.130 0.00 0.00 0.00 4.20
2275 2310 1.209504 CTATTCCAACGGCCTCAGGAA 59.790 52.381 18.25 18.25 43.63 3.36
2287 2322 7.956328 ATACAGTAGACAGACACTATTCCAA 57.044 36.000 0.00 0.00 0.00 3.53
2382 2417 8.303876 GGCATTTATTCTGAAGAAAACAGGTTA 58.696 33.333 13.44 0.00 37.61 2.85
2406 2441 7.980099 ACATGTCTAAGTAGTTAAGTACATGGC 59.020 37.037 25.51 12.09 44.44 4.40
2650 3021 8.117813 AGCTAGCCATAACTCTTCTATTCTAC 57.882 38.462 12.13 0.00 0.00 2.59
2775 3146 7.076446 AGGAAGGTTCTAAATAGCTATCTGGA 58.924 38.462 6.72 0.00 0.00 3.86
2861 3232 5.221106 GCCATACAAATAGTGCATGTGATGT 60.221 40.000 0.12 2.01 29.94 3.06
2902 3276 6.238538 GCTTTACCGCTTTATAAACCATGCTA 60.239 38.462 0.00 0.00 0.00 3.49
2903 3277 5.449999 GCTTTACCGCTTTATAAACCATGCT 60.450 40.000 0.00 0.00 0.00 3.79
2904 3278 4.738252 GCTTTACCGCTTTATAAACCATGC 59.262 41.667 0.00 0.00 0.00 4.06
2905 3279 4.967575 CGCTTTACCGCTTTATAAACCATG 59.032 41.667 0.00 0.00 0.00 3.66
2906 3280 4.877251 TCGCTTTACCGCTTTATAAACCAT 59.123 37.500 0.00 0.00 0.00 3.55
2907 3281 4.093261 GTCGCTTTACCGCTTTATAAACCA 59.907 41.667 0.00 0.00 0.00 3.67
2908 3282 4.494690 GGTCGCTTTACCGCTTTATAAACC 60.495 45.833 0.00 0.00 0.00 3.27
2909 3283 4.330894 AGGTCGCTTTACCGCTTTATAAAC 59.669 41.667 0.00 0.00 44.77 2.01
2910 3284 4.506758 AGGTCGCTTTACCGCTTTATAAA 58.493 39.130 0.00 0.00 44.77 1.40
2911 3285 4.127566 AGGTCGCTTTACCGCTTTATAA 57.872 40.909 0.00 0.00 44.77 0.98
2912 3286 3.806625 AGGTCGCTTTACCGCTTTATA 57.193 42.857 0.00 0.00 44.77 0.98
2913 3287 2.685850 AGGTCGCTTTACCGCTTTAT 57.314 45.000 0.00 0.00 44.77 1.40
2914 3288 3.591196 TTAGGTCGCTTTACCGCTTTA 57.409 42.857 0.00 0.00 44.77 1.85
2915 3289 2.460757 TTAGGTCGCTTTACCGCTTT 57.539 45.000 0.00 0.00 44.77 3.51
2916 3290 2.344025 CTTTAGGTCGCTTTACCGCTT 58.656 47.619 0.00 0.00 44.77 4.68
2917 3291 2.005560 GCTTTAGGTCGCTTTACCGCT 61.006 52.381 0.00 0.00 44.77 5.52
2918 3292 0.372679 GCTTTAGGTCGCTTTACCGC 59.627 55.000 0.00 0.00 44.77 5.68
2919 3293 0.643820 CGCTTTAGGTCGCTTTACCG 59.356 55.000 0.00 0.00 44.77 4.02
2920 3294 1.925185 CTCGCTTTAGGTCGCTTTACC 59.075 52.381 0.00 0.00 40.06 2.85
2921 3295 1.323834 GCTCGCTTTAGGTCGCTTTAC 59.676 52.381 0.00 0.00 0.00 2.01
2922 3296 1.067425 TGCTCGCTTTAGGTCGCTTTA 60.067 47.619 0.00 0.00 0.00 1.85
2923 3297 0.320421 TGCTCGCTTTAGGTCGCTTT 60.320 50.000 0.00 0.00 0.00 3.51
2924 3298 1.014564 GTGCTCGCTTTAGGTCGCTT 61.015 55.000 0.00 0.00 0.00 4.68
2925 3299 1.446272 GTGCTCGCTTTAGGTCGCT 60.446 57.895 0.00 0.00 0.00 4.93
2926 3300 2.453638 GGTGCTCGCTTTAGGTCGC 61.454 63.158 0.00 0.00 0.00 5.19
2927 3301 1.080093 TGGTGCTCGCTTTAGGTCG 60.080 57.895 0.00 0.00 0.00 4.79
2928 3302 1.019805 GGTGGTGCTCGCTTTAGGTC 61.020 60.000 0.00 0.00 0.00 3.85
2929 3303 1.003718 GGTGGTGCTCGCTTTAGGT 60.004 57.895 0.00 0.00 0.00 3.08
2930 3304 1.745489 GGGTGGTGCTCGCTTTAGG 60.745 63.158 0.00 0.00 0.00 2.69
2931 3305 2.100631 CGGGTGGTGCTCGCTTTAG 61.101 63.158 0.00 0.00 32.68 1.85
2932 3306 2.047655 CGGGTGGTGCTCGCTTTA 60.048 61.111 0.00 0.00 32.68 1.85
2940 3314 2.813908 CGTTAGAGCGGGTGGTGC 60.814 66.667 0.00 0.00 0.00 5.01
2941 3315 2.781595 AAGCGTTAGAGCGGGTGGTG 62.782 60.000 0.00 0.00 43.00 4.17
2942 3316 1.252904 TAAGCGTTAGAGCGGGTGGT 61.253 55.000 0.00 0.00 43.00 4.16
2943 3317 0.108520 TTAAGCGTTAGAGCGGGTGG 60.109 55.000 0.00 0.00 43.00 4.61
2944 3318 1.278238 CTTAAGCGTTAGAGCGGGTG 58.722 55.000 0.00 0.00 43.00 4.61
2945 3319 0.459759 GCTTAAGCGTTAGAGCGGGT 60.460 55.000 12.53 0.00 43.00 5.28
2946 3320 2.298593 GCTTAAGCGTTAGAGCGGG 58.701 57.895 12.53 0.00 43.00 6.13
2977 3351 4.455877 CCTTAGATATTTGCCCGCTTTAGG 59.544 45.833 0.00 0.00 0.00 2.69
2978 3352 4.083271 GCCTTAGATATTTGCCCGCTTTAG 60.083 45.833 0.00 0.00 0.00 1.85
2979 3353 3.818773 GCCTTAGATATTTGCCCGCTTTA 59.181 43.478 0.00 0.00 0.00 1.85
2980 3354 2.623416 GCCTTAGATATTTGCCCGCTTT 59.377 45.455 0.00 0.00 0.00 3.51
2981 3355 2.230660 GCCTTAGATATTTGCCCGCTT 58.769 47.619 0.00 0.00 0.00 4.68
2982 3356 1.878102 CGCCTTAGATATTTGCCCGCT 60.878 52.381 0.00 0.00 0.00 5.52
2983 3357 0.517316 CGCCTTAGATATTTGCCCGC 59.483 55.000 0.00 0.00 0.00 6.13
2984 3358 0.517316 GCGCCTTAGATATTTGCCCG 59.483 55.000 0.00 0.00 0.00 6.13
2985 3359 1.537202 CAGCGCCTTAGATATTTGCCC 59.463 52.381 2.29 0.00 0.00 5.36
2986 3360 1.068954 GCAGCGCCTTAGATATTTGCC 60.069 52.381 2.29 0.00 0.00 4.52
2987 3361 1.068954 GGCAGCGCCTTAGATATTTGC 60.069 52.381 2.29 2.54 46.69 3.68
2988 3362 2.977405 GGCAGCGCCTTAGATATTTG 57.023 50.000 2.29 0.00 46.69 2.32
3030 3404 1.419374 CGCTTCAGACGCTTAAGTGT 58.581 50.000 21.27 21.27 42.13 3.55
3031 3405 0.716108 CCGCTTCAGACGCTTAAGTG 59.284 55.000 14.47 14.47 0.00 3.16
3032 3406 0.389948 CCCGCTTCAGACGCTTAAGT 60.390 55.000 4.02 0.00 0.00 2.24
3033 3407 0.108804 TCCCGCTTCAGACGCTTAAG 60.109 55.000 0.00 0.00 0.00 1.85
3034 3408 0.389426 GTCCCGCTTCAGACGCTTAA 60.389 55.000 0.00 0.00 0.00 1.85
3035 3409 1.214589 GTCCCGCTTCAGACGCTTA 59.785 57.895 0.00 0.00 0.00 3.09
3036 3410 2.048127 GTCCCGCTTCAGACGCTT 60.048 61.111 0.00 0.00 0.00 4.68
3048 3422 6.257193 GGATACCATATTTATAAAGCGTCCCG 59.743 42.308 3.94 0.00 0.00 5.14
3049 3423 7.549615 GGATACCATATTTATAAAGCGTCCC 57.450 40.000 3.94 0.32 0.00 4.46
3148 3522 2.989840 CTGGAGAGTCAGCTTAAACGTG 59.010 50.000 0.00 0.00 0.00 4.49
3357 3742 6.325545 TCCCTCCGTAAAGAAATATAAGAGCA 59.674 38.462 0.00 0.00 0.00 4.26
3399 3784 3.064958 CGATCAGAAATGCATGACAGCTT 59.935 43.478 0.00 0.00 34.99 3.74
3403 3788 4.937015 TCTTTCGATCAGAAATGCATGACA 59.063 37.500 0.00 0.00 46.60 3.58
3417 3802 4.800993 ACGTGACAGATCAATCTTTCGATC 59.199 41.667 0.00 0.00 36.62 3.69
3515 3938 5.646360 GCAAACAAAGTAAGTAGGCTCCATA 59.354 40.000 0.00 0.00 0.00 2.74
3530 3953 5.067805 ACAAGAGAACTAAGGGCAAACAAAG 59.932 40.000 0.00 0.00 0.00 2.77
3761 4192 4.814234 TCAGCAGAGTAAAAAGAAAGCGAA 59.186 37.500 0.00 0.00 0.00 4.70
3779 4210 5.068987 AGTTGTTTTTGGCTTTCTATCAGCA 59.931 36.000 0.00 0.00 39.21 4.41
3802 4233 7.633193 AGTGGAGAGTACAAGACTTGTATAG 57.367 40.000 26.52 0.00 46.73 1.31
3803 4234 7.889073 AGAAGTGGAGAGTACAAGACTTGTATA 59.111 37.037 26.52 8.81 46.73 1.47
4002 4433 2.380084 AATGAGCTGGCATTGCAAAG 57.620 45.000 11.39 0.00 37.12 2.77
4108 4539 5.957796 GTGTTGAAAATATACGTAGCACTGC 59.042 40.000 0.08 0.00 0.00 4.40
4335 4766 8.926374 TCAAGGTAATCCGAGGTACAATTATTA 58.074 33.333 0.00 0.00 39.05 0.98
4336 4767 7.798071 TCAAGGTAATCCGAGGTACAATTATT 58.202 34.615 0.00 0.00 39.05 1.40
4337 4768 7.369551 TCAAGGTAATCCGAGGTACAATTAT 57.630 36.000 0.00 0.00 39.05 1.28
4344 4775 2.742348 TGCTCAAGGTAATCCGAGGTA 58.258 47.619 0.00 0.00 39.05 3.08
4383 4814 1.380380 GCAGGGCAAGCTAATGGGT 60.380 57.895 0.00 0.00 0.00 4.51
4384 4815 1.076485 AGCAGGGCAAGCTAATGGG 60.076 57.895 0.75 0.00 41.32 4.00
4385 4816 2.012902 GCAGCAGGGCAAGCTAATGG 62.013 60.000 2.51 0.00 41.14 3.16
4386 4817 1.035932 AGCAGCAGGGCAAGCTAATG 61.036 55.000 2.51 0.00 41.14 1.90
4387 4818 0.750911 GAGCAGCAGGGCAAGCTAAT 60.751 55.000 7.91 0.00 40.93 1.73
4388 4819 1.377725 GAGCAGCAGGGCAAGCTAA 60.378 57.895 7.91 0.00 40.93 3.09
4389 4820 2.270205 GAGCAGCAGGGCAAGCTA 59.730 61.111 7.91 0.00 40.93 3.32
4390 4821 3.962694 TGAGCAGCAGGGCAAGCT 61.963 61.111 7.70 7.70 42.82 3.74
4391 4822 3.745803 GTGAGCAGCAGGGCAAGC 61.746 66.667 0.00 0.00 35.83 4.01
4392 4823 3.060615 GGTGAGCAGCAGGGCAAG 61.061 66.667 0.00 0.00 35.83 4.01
4393 4824 4.666253 GGGTGAGCAGCAGGGCAA 62.666 66.667 0.00 0.00 35.83 4.52
4395 4826 2.556840 TAATGGGTGAGCAGCAGGGC 62.557 60.000 0.00 0.00 0.00 5.19
4396 4827 0.465097 CTAATGGGTGAGCAGCAGGG 60.465 60.000 0.00 0.00 0.00 4.45
4397 4828 1.099879 GCTAATGGGTGAGCAGCAGG 61.100 60.000 0.00 0.00 38.62 4.85
4398 4829 0.107312 AGCTAATGGGTGAGCAGCAG 60.107 55.000 0.00 0.00 41.36 4.24
4399 4830 0.329261 AAGCTAATGGGTGAGCAGCA 59.671 50.000 0.00 0.00 41.36 4.41
4400 4831 0.737219 CAAGCTAATGGGTGAGCAGC 59.263 55.000 0.00 0.00 41.36 5.25
4401 4832 0.737219 GCAAGCTAATGGGTGAGCAG 59.263 55.000 0.00 0.00 41.36 4.24
4402 4833 0.680921 GGCAAGCTAATGGGTGAGCA 60.681 55.000 0.00 0.00 41.36 4.26
4403 4834 1.387295 GGGCAAGCTAATGGGTGAGC 61.387 60.000 0.00 0.00 39.08 4.26
4404 4835 0.257039 AGGGCAAGCTAATGGGTGAG 59.743 55.000 0.00 0.00 0.00 3.51
4405 4836 0.034186 CAGGGCAAGCTAATGGGTGA 60.034 55.000 0.00 0.00 0.00 4.02
4406 4837 1.669999 GCAGGGCAAGCTAATGGGTG 61.670 60.000 0.00 0.00 0.00 4.61
4407 4838 1.380380 GCAGGGCAAGCTAATGGGT 60.380 57.895 0.00 0.00 0.00 4.51
4528 4959 1.852895 GTATCACTTAGCAAGCGACGG 59.147 52.381 0.00 0.00 0.00 4.79
4536 4967 6.038382 GCTACAGTAGAGTGTATCACTTAGCA 59.962 42.308 12.15 0.00 45.44 3.49
4554 4985 2.126307 CGCGCACAGAGCTACAGT 60.126 61.111 8.75 0.00 42.61 3.55
4584 5015 0.599728 CTCTCGCTAATCCCTGCTGC 60.600 60.000 0.00 0.00 0.00 5.25
4604 5036 4.832608 GCCACACCGATCCCGTCC 62.833 72.222 0.00 0.00 0.00 4.79
4646 5078 8.924511 TCTTGAAATGTTTTTCTCCTATCACT 57.075 30.769 0.75 0.00 41.54 3.41
4687 5119 2.103263 AGAGAAACCAGCTCGTGAAGTT 59.897 45.455 0.00 0.00 37.46 2.66
4691 5123 1.328279 TGAGAGAAACCAGCTCGTGA 58.672 50.000 0.00 0.00 37.46 4.35
4693 5125 2.094286 CAGATGAGAGAAACCAGCTCGT 60.094 50.000 0.00 0.00 37.46 4.18
4792 5232 6.071221 TGCGATACCACTAGTTTAGAAGGAAA 60.071 38.462 0.00 0.00 0.00 3.13
4902 5342 1.065709 TGGCCAAGGTCGAGAATAACC 60.066 52.381 0.61 0.00 35.69 2.85
4905 5345 1.207089 CTGTGGCCAAGGTCGAGAATA 59.793 52.381 7.24 0.00 0.00 1.75
4911 5351 1.002134 ATTCCTGTGGCCAAGGTCG 60.002 57.895 24.54 6.95 0.00 4.79
4992 5439 1.402787 TAGACTGATGGCGCTGATGA 58.597 50.000 7.64 0.00 0.00 2.92
4994 5441 2.988010 TTTAGACTGATGGCGCTGAT 57.012 45.000 7.64 0.00 0.00 2.90
5336 5784 3.945921 TGGTTTCGTTTGGTTATGTCACA 59.054 39.130 0.00 0.00 0.00 3.58
5341 5789 3.547601 GTCGTGGTTTCGTTTGGTTATG 58.452 45.455 0.00 0.00 0.00 1.90
5352 5814 2.068837 TGATGGTACGTCGTGGTTTC 57.931 50.000 8.47 0.98 0.00 2.78
5372 5834 0.543410 TAAAGGGGAGTCTGCCGTCA 60.543 55.000 6.02 0.00 0.00 4.35
5418 5880 6.044754 TCCATCTAATCCAGTGGCTATCAAAT 59.955 38.462 3.51 0.00 0.00 2.32
5472 5938 6.324512 AGGCCATTAATATGTTGAATGAGCAA 59.675 34.615 5.01 0.00 33.28 3.91
5478 5944 7.297614 ACCTGTAGGCCATTAATATGTTGAAT 58.702 34.615 5.01 0.00 39.32 2.57
5499 5965 6.418057 AGGCTATAGAGAGAAATCAACCTG 57.582 41.667 3.21 0.00 0.00 4.00
5500 5966 7.310361 GCATAGGCTATAGAGAGAAATCAACCT 60.310 40.741 6.72 0.00 36.96 3.50
5534 6000 8.774586 GTTTCTGTGTAATATCACTCACACTTT 58.225 33.333 5.43 0.00 41.43 2.66
5537 6003 6.183360 CGGTTTCTGTGTAATATCACTCACAC 60.183 42.308 0.00 0.00 41.28 3.82
5561 6029 2.006888 AGTGACTGGAAACACAACACG 58.993 47.619 0.00 0.00 39.18 4.49
5576 6044 2.735663 CAACAGAGACATGCAGAGTGAC 59.264 50.000 0.00 0.00 0.00 3.67
5587 6055 1.271543 CCATTGCCTCCAACAGAGACA 60.272 52.381 0.00 0.00 46.50 3.41
5588 6056 1.271597 ACCATTGCCTCCAACAGAGAC 60.272 52.381 0.00 0.00 46.50 3.36
5605 6073 1.326213 CCCAAGCACAACCAACACCA 61.326 55.000 0.00 0.00 0.00 4.17
5681 6149 3.334583 TCTGAGTTAGCAGGCGAATTT 57.665 42.857 0.00 0.00 36.55 1.82
5858 6326 2.828877 CTGTTTCAGGTGGTAACGACA 58.171 47.619 0.00 0.00 42.51 4.35
5898 6366 1.515521 CTCCAACCGTCCAGCCAAAC 61.516 60.000 0.00 0.00 0.00 2.93
5939 6407 4.395231 CGTTCCAGATACAGACAGTGTAGA 59.605 45.833 0.00 0.00 45.06 2.59
5943 6411 2.263077 GCGTTCCAGATACAGACAGTG 58.737 52.381 0.00 0.00 0.00 3.66
5962 6430 5.287513 ACACAAGACGTTACAAAATGTTTGC 59.712 36.000 0.00 0.00 34.92 3.68
6012 6483 1.328680 CGCCGGAGTTCAGAATCAATG 59.671 52.381 5.05 0.00 0.00 2.82
6077 6548 4.382754 GCCACTTCGTTGTTTTCATGATTC 59.617 41.667 0.00 0.00 0.00 2.52
6185 6662 4.517285 ACTCAACCAACTATAGCCACATG 58.483 43.478 0.00 0.00 0.00 3.21
6189 6666 4.901197 TCAACTCAACCAACTATAGCCA 57.099 40.909 0.00 0.00 0.00 4.75
6204 6681 4.516698 TCTTGTTCATCCTTGCTTCAACTC 59.483 41.667 0.00 0.00 0.00 3.01
6212 6689 6.849588 AACAAATTTCTTGTTCATCCTTGC 57.150 33.333 0.00 0.00 38.10 4.01
6221 6698 7.981142 TCAGACGACTAAACAAATTTCTTGTT 58.019 30.769 0.00 0.00 43.72 2.83
6241 6718 4.997395 TGTGTATTCCAAAGAAGCTCAGAC 59.003 41.667 0.00 0.00 34.86 3.51
6242 6719 5.227569 TGTGTATTCCAAAGAAGCTCAGA 57.772 39.130 0.00 0.00 34.86 3.27
6310 6795 6.909550 TGTTAAGGGCATTGTACAAGAATT 57.090 33.333 14.65 6.93 0.00 2.17
6341 6945 3.193267 GTGGTGTTGGTCAATGCATATGT 59.807 43.478 0.00 0.00 0.00 2.29
6393 6999 3.069016 TCAAGTACTTCTGCCGACTTTCA 59.931 43.478 4.77 0.00 29.73 2.69
6439 7045 0.678048 GAGGGTTGACATCACCAGGC 60.678 60.000 0.00 0.00 0.00 4.85
6459 7065 2.094286 AGAGAACTGACGGAGCAATGAG 60.094 50.000 0.00 0.00 0.00 2.90
6469 7075 3.927142 GGACATACCAAAGAGAACTGACG 59.073 47.826 0.00 0.00 38.79 4.35
6470 7076 5.153950 AGGACATACCAAAGAGAACTGAC 57.846 43.478 0.00 0.00 42.04 3.51
6471 7077 5.825593 AAGGACATACCAAAGAGAACTGA 57.174 39.130 0.00 0.00 42.04 3.41
6472 7078 6.884280 AAAAGGACATACCAAAGAGAACTG 57.116 37.500 0.00 0.00 42.04 3.16
6528 7134 6.910536 ATTTTCAGGTCGCAAGTTAGATAG 57.089 37.500 0.00 0.00 39.48 2.08
6621 7227 0.968405 CCACCATGTTCCAAAGGGTG 59.032 55.000 0.00 0.00 46.63 4.61
6692 7300 8.952278 GTTTATTGGGAAAAAGTTTTGGAAGTT 58.048 29.630 0.61 0.00 0.00 2.66
6693 7301 8.325787 AGTTTATTGGGAAAAAGTTTTGGAAGT 58.674 29.630 0.61 0.00 0.00 3.01
6694 7302 8.731275 AGTTTATTGGGAAAAAGTTTTGGAAG 57.269 30.769 0.61 0.00 0.00 3.46
6714 7322 4.439057 ACAGAAACGACAGCTCAAGTTTA 58.561 39.130 9.17 0.00 37.00 2.01



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.