Multiple sequence alignment - TraesCS3A01G112200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G112200 chr3A 100.000 4900 0 0 1 4900 79404717 79399818 0.000000e+00 9049.0
1 TraesCS3A01G112200 chr3A 78.680 394 41 18 2425 2816 585936348 585936700 6.380000e-54 222.0
2 TraesCS3A01G112200 chr3D 94.299 2526 102 23 715 3222 67714130 67711629 0.000000e+00 3829.0
3 TraesCS3A01G112200 chr3D 91.095 1123 47 21 3800 4899 67710890 67709798 0.000000e+00 1471.0
4 TraesCS3A01G112200 chr3D 90.893 560 28 9 3259 3799 67711493 67710938 0.000000e+00 730.0
5 TraesCS3A01G112200 chr3D 81.897 232 38 4 479 708 92509658 92509429 5.010000e-45 193.0
6 TraesCS3A01G112200 chr3B 91.316 2234 124 32 1604 3800 114143227 114145427 0.000000e+00 2987.0
7 TraesCS3A01G112200 chr3B 87.391 1142 75 34 3800 4890 114145474 114146597 0.000000e+00 1247.0
8 TraesCS3A01G112200 chr3B 95.272 698 30 3 937 1633 114142531 114143226 0.000000e+00 1103.0
9 TraesCS3A01G112200 chr2B 88.311 1326 87 21 1897 3182 113325565 113326862 0.000000e+00 1528.0
10 TraesCS3A01G112200 chr2B 87.461 638 38 20 3799 4433 113327501 113328099 0.000000e+00 697.0
11 TraesCS3A01G112200 chr2B 90.576 382 23 6 3449 3817 113327096 113327477 1.230000e-135 494.0
12 TraesCS3A01G112200 chr2B 87.352 253 25 2 2 247 113324001 113324253 2.890000e-72 283.0
13 TraesCS3A01G112200 chr2B 91.279 172 12 3 301 470 7782415 7782245 1.060000e-56 231.0
14 TraesCS3A01G112200 chr2B 88.889 99 7 3 779 874 113325480 113325577 8.620000e-23 119.0
15 TraesCS3A01G112200 chr2D 88.115 1321 94 20 1901 3182 74279191 74280487 0.000000e+00 1511.0
16 TraesCS3A01G112200 chr2D 93.555 481 26 5 3800 4279 74281519 74281995 0.000000e+00 712.0
17 TraesCS3A01G112200 chr2D 88.220 382 30 5 3449 3817 74281115 74281494 4.500000e-120 442.0
18 TraesCS3A01G112200 chr2D 90.972 144 10 2 726 866 74279046 74279189 1.800000e-44 191.0
19 TraesCS3A01G112200 chr2D 95.062 81 4 0 164 244 74278892 74278972 1.430000e-25 128.0
20 TraesCS3A01G112200 chr2A 84.175 891 68 27 1694 2533 73554194 73555062 0.000000e+00 797.0
21 TraesCS3A01G112200 chr2A 93.763 481 25 5 3800 4279 73556602 73557078 0.000000e+00 717.0
22 TraesCS3A01G112200 chr2A 92.994 471 31 2 2708 3176 73555225 73555695 0.000000e+00 686.0
23 TraesCS3A01G112200 chr2A 89.529 382 27 7 3449 3817 73556196 73556577 5.740000e-129 472.0
24 TraesCS3A01G112200 chr2A 82.988 241 37 4 473 711 596260644 596260882 1.070000e-51 215.0
25 TraesCS3A01G112200 chr2A 77.586 232 25 13 3196 3413 73555761 73555979 1.110000e-21 115.0
26 TraesCS3A01G112200 chr6B 78.967 813 114 35 2279 3072 116892363 116891589 7.320000e-138 501.0
27 TraesCS3A01G112200 chr6B 78.046 829 119 41 2279 3072 28009429 28008629 9.610000e-127 464.0
28 TraesCS3A01G112200 chr7B 91.322 242 19 2 472 712 588859871 588860111 3.660000e-86 329.0
29 TraesCS3A01G112200 chr7B 83.691 233 32 5 479 708 3901083 3901312 1.070000e-51 215.0
30 TraesCS3A01G112200 chr7B 89.820 167 11 4 303 467 588858875 588859037 4.970000e-50 209.0
31 TraesCS3A01G112200 chr4B 85.345 232 30 4 479 708 530204033 530204262 2.280000e-58 237.0
32 TraesCS3A01G112200 chr4B 84.100 239 35 3 479 715 467801933 467801696 1.370000e-55 228.0
33 TraesCS3A01G112200 chr5A 83.966 237 35 3 473 708 559463928 559464162 1.770000e-54 224.0
34 TraesCS3A01G112200 chr5A 96.774 62 2 0 4819 4880 594323305 594323244 2.410000e-18 104.0
35 TraesCS3A01G112200 chr5A 91.667 72 5 1 4819 4889 382114925 382114854 1.120000e-16 99.0
36 TraesCS3A01G112200 chr4A 74.457 599 77 46 2257 2822 151642676 151642121 6.470000e-44 189.0
37 TraesCS3A01G112200 chr4A 96.721 61 2 0 4819 4879 662286435 662286495 8.680000e-18 102.0
38 TraesCS3A01G112200 chr6D 95.652 69 3 0 4819 4887 78352706 78352774 1.440000e-20 111.0
39 TraesCS3A01G112200 chr5D 93.056 72 5 0 4818 4889 478164248 478164177 6.710000e-19 106.0
40 TraesCS3A01G112200 chr5B 92.647 68 5 0 4819 4886 582392042 582391975 1.120000e-16 99.0
41 TraesCS3A01G112200 chr6A 91.304 69 6 0 4819 4887 94067049 94067117 1.450000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G112200 chr3A 79399818 79404717 4899 True 9049.0 9049 100.000000 1 4900 1 chr3A.!!$R1 4899
1 TraesCS3A01G112200 chr3D 67709798 67714130 4332 True 2010.0 3829 92.095667 715 4899 3 chr3D.!!$R2 4184
2 TraesCS3A01G112200 chr3B 114142531 114146597 4066 False 1779.0 2987 91.326333 937 4890 3 chr3B.!!$F1 3953
3 TraesCS3A01G112200 chr2B 113324001 113328099 4098 False 624.2 1528 88.517800 2 4433 5 chr2B.!!$F1 4431
4 TraesCS3A01G112200 chr2D 74278892 74281995 3103 False 596.8 1511 91.184800 164 4279 5 chr2D.!!$F1 4115
5 TraesCS3A01G112200 chr2A 73554194 73557078 2884 False 557.4 797 87.609400 1694 4279 5 chr2A.!!$F2 2585
6 TraesCS3A01G112200 chr6B 116891589 116892363 774 True 501.0 501 78.967000 2279 3072 1 chr6B.!!$R2 793
7 TraesCS3A01G112200 chr6B 28008629 28009429 800 True 464.0 464 78.046000 2279 3072 1 chr6B.!!$R1 793
8 TraesCS3A01G112200 chr7B 588858875 588860111 1236 False 269.0 329 90.571000 303 712 2 chr7B.!!$F2 409

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
705 714 0.035458 GGTGTGCTGCTGGACTTACT 59.965 55.0 15.83 0.0 35.45 2.24 F
905 2009 0.395311 CTCCAGCACCGGGAGTACTA 60.395 60.0 6.32 0.0 45.59 1.82 F
2076 3374 0.440371 CCTTCTCGCGTTTCAAGCTC 59.560 55.0 5.77 0.0 0.00 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2057 3355 0.440371 GAGCTTGAAACGCGAGAAGG 59.560 55.000 15.93 0.0 0.00 3.46 R
2580 3919 2.039418 AGCCAGTCGCAGGATACAATA 58.961 47.619 0.00 0.0 41.38 1.90 R
3969 6220 1.202154 CCTCGAGCAGTACAGGTAACG 60.202 57.143 6.99 0.0 46.39 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 4.838423 TCTACCATTTGTGAAGTCCAGAGA 59.162 41.667 0.00 0.00 0.00 3.10
47 48 3.475566 TTTGTGAAGTCCAGAGACCAG 57.524 47.619 0.00 0.00 44.72 4.00
51 52 2.564947 GTGAAGTCCAGAGACCAGTCAT 59.435 50.000 0.00 0.00 44.72 3.06
73 81 2.017049 AGTTGCAACACACCAGTTCTC 58.983 47.619 30.11 0.00 0.00 2.87
102 110 3.565307 AGGAAACAAAGTTCATGCCTCA 58.435 40.909 0.00 0.00 0.00 3.86
103 111 3.319122 AGGAAACAAAGTTCATGCCTCAC 59.681 43.478 0.00 0.00 0.00 3.51
104 112 3.068024 GGAAACAAAGTTCATGCCTCACA 59.932 43.478 0.00 0.00 0.00 3.58
124 132 1.449601 GTACTCACCGTGGGCATGG 60.450 63.158 0.00 0.00 43.15 3.66
131 139 1.678635 CCGTGGGCATGGTGAACAT 60.679 57.895 0.00 0.00 41.57 2.71
139 147 3.453916 ATGGTGAACATGGTGGCAA 57.546 47.368 0.00 0.00 38.70 4.52
209 217 1.021968 GGTTGGATTAGCGCCGAATT 58.978 50.000 2.29 0.00 0.00 2.17
210 218 2.158871 AGGTTGGATTAGCGCCGAATTA 60.159 45.455 2.29 0.00 0.00 1.40
247 255 1.688187 GGAGTAGGGAAGCGGGGAA 60.688 63.158 0.00 0.00 0.00 3.97
248 256 1.687297 GGAGTAGGGAAGCGGGGAAG 61.687 65.000 0.00 0.00 0.00 3.46
249 257 1.687297 GAGTAGGGAAGCGGGGAAGG 61.687 65.000 0.00 0.00 0.00 3.46
250 258 1.688187 GTAGGGAAGCGGGGAAGGA 60.688 63.158 0.00 0.00 0.00 3.36
251 259 1.688187 TAGGGAAGCGGGGAAGGAC 60.688 63.158 0.00 0.00 0.00 3.85
252 260 4.468689 GGGAAGCGGGGAAGGACG 62.469 72.222 0.00 0.00 0.00 4.79
253 261 3.387947 GGAAGCGGGGAAGGACGA 61.388 66.667 0.00 0.00 0.00 4.20
254 262 2.184579 GAAGCGGGGAAGGACGAG 59.815 66.667 0.00 0.00 0.00 4.18
255 263 2.283676 AAGCGGGGAAGGACGAGA 60.284 61.111 0.00 0.00 0.00 4.04
256 264 1.677637 GAAGCGGGGAAGGACGAGAT 61.678 60.000 0.00 0.00 0.00 2.75
267 275 1.062886 AGGACGAGATGGGATTCAGGA 60.063 52.381 0.00 0.00 0.00 3.86
275 283 4.119155 AGATGGGATTCAGGAAGGGTTTA 58.881 43.478 0.00 0.00 0.00 2.01
279 287 3.204382 GGGATTCAGGAAGGGTTTATGGA 59.796 47.826 0.00 0.00 0.00 3.41
280 288 4.207955 GGATTCAGGAAGGGTTTATGGAC 58.792 47.826 0.00 0.00 0.00 4.02
281 289 4.079730 GGATTCAGGAAGGGTTTATGGACT 60.080 45.833 0.00 0.00 0.00 3.85
282 290 4.301072 TTCAGGAAGGGTTTATGGACTG 57.699 45.455 0.00 0.00 0.00 3.51
283 291 2.576191 TCAGGAAGGGTTTATGGACTGG 59.424 50.000 0.00 0.00 0.00 4.00
284 292 2.308866 CAGGAAGGGTTTATGGACTGGT 59.691 50.000 0.00 0.00 0.00 4.00
285 293 2.308866 AGGAAGGGTTTATGGACTGGTG 59.691 50.000 0.00 0.00 0.00 4.17
286 294 2.307686 GGAAGGGTTTATGGACTGGTGA 59.692 50.000 0.00 0.00 0.00 4.02
287 295 3.053619 GGAAGGGTTTATGGACTGGTGAT 60.054 47.826 0.00 0.00 0.00 3.06
288 296 3.652057 AGGGTTTATGGACTGGTGATG 57.348 47.619 0.00 0.00 0.00 3.07
289 297 2.242196 AGGGTTTATGGACTGGTGATGG 59.758 50.000 0.00 0.00 0.00 3.51
290 298 2.241176 GGGTTTATGGACTGGTGATGGA 59.759 50.000 0.00 0.00 0.00 3.41
291 299 3.308832 GGGTTTATGGACTGGTGATGGAA 60.309 47.826 0.00 0.00 0.00 3.53
292 300 3.947834 GGTTTATGGACTGGTGATGGAAG 59.052 47.826 0.00 0.00 0.00 3.46
293 301 4.324254 GGTTTATGGACTGGTGATGGAAGA 60.324 45.833 0.00 0.00 0.00 2.87
294 302 4.760530 TTATGGACTGGTGATGGAAGAG 57.239 45.455 0.00 0.00 0.00 2.85
295 303 1.279496 TGGACTGGTGATGGAAGAGG 58.721 55.000 0.00 0.00 0.00 3.69
296 304 0.107459 GGACTGGTGATGGAAGAGGC 60.107 60.000 0.00 0.00 0.00 4.70
297 305 0.615331 GACTGGTGATGGAAGAGGCA 59.385 55.000 0.00 0.00 0.00 4.75
298 306 0.326264 ACTGGTGATGGAAGAGGCAC 59.674 55.000 0.00 0.00 0.00 5.01
299 307 0.325933 CTGGTGATGGAAGAGGCACA 59.674 55.000 0.00 0.00 33.09 4.57
300 308 0.994247 TGGTGATGGAAGAGGCACAT 59.006 50.000 0.00 0.00 33.09 3.21
301 309 2.171237 CTGGTGATGGAAGAGGCACATA 59.829 50.000 0.00 0.00 33.09 2.29
314 322 2.040278 AGGCACATAAGAGCAAGTCCAA 59.960 45.455 0.00 0.00 32.55 3.53
317 325 3.253188 GCACATAAGAGCAAGTCCAACAA 59.747 43.478 0.00 0.00 0.00 2.83
321 329 6.006449 ACATAAGAGCAAGTCCAACAATTCT 58.994 36.000 0.00 0.00 0.00 2.40
327 335 5.574188 AGCAAGTCCAACAATTCTCCTAAT 58.426 37.500 0.00 0.00 0.00 1.73
328 336 6.012745 AGCAAGTCCAACAATTCTCCTAATT 58.987 36.000 0.00 0.00 0.00 1.40
374 382 8.783660 ATAGGGGATTTCCTTAAAAAGATTCC 57.216 34.615 0.00 0.00 38.30 3.01
376 384 5.964477 GGGGATTTCCTTAAAAAGATTCCCT 59.036 40.000 0.00 0.00 35.95 4.20
377 385 6.098409 GGGGATTTCCTTAAAAAGATTCCCTC 59.902 42.308 0.00 0.00 35.95 4.30
392 400 5.890419 AGATTCCCTCCTAAAAATTGCTCAG 59.110 40.000 0.00 0.00 0.00 3.35
396 404 4.268359 CCTCCTAAAAATTGCTCAGCTCT 58.732 43.478 0.00 0.00 0.00 4.09
411 419 2.112190 AGCTCTAGCAGTTCCCCTAAC 58.888 52.381 4.54 0.00 45.16 2.34
429 438 7.954620 TCCCCTAACTTCTCCCTTATTCTATAC 59.045 40.741 0.00 0.00 0.00 1.47
473 482 9.117183 ACTACCAACAACTAGTTTTTAAAGAGG 57.883 33.333 5.07 5.89 38.74 3.69
474 483 6.802608 ACCAACAACTAGTTTTTAAAGAGGC 58.197 36.000 5.07 0.00 38.74 4.70
475 484 5.912955 CCAACAACTAGTTTTTAAAGAGGCG 59.087 40.000 5.07 0.00 38.74 5.52
476 485 6.238538 CCAACAACTAGTTTTTAAAGAGGCGA 60.239 38.462 5.07 0.00 38.74 5.54
477 486 6.930667 ACAACTAGTTTTTAAAGAGGCGAA 57.069 33.333 5.07 0.00 0.00 4.70
478 487 6.956047 ACAACTAGTTTTTAAAGAGGCGAAG 58.044 36.000 5.07 0.00 0.00 3.79
497 506 2.742372 CGTTGTGGCGGGAAGGAG 60.742 66.667 0.00 0.00 0.00 3.69
498 507 3.056328 GTTGTGGCGGGAAGGAGC 61.056 66.667 0.00 0.00 0.00 4.70
499 508 3.249189 TTGTGGCGGGAAGGAGCT 61.249 61.111 0.00 0.00 0.00 4.09
500 509 2.829384 TTGTGGCGGGAAGGAGCTT 61.829 57.895 0.00 0.00 0.00 3.74
502 511 1.603739 GTGGCGGGAAGGAGCTTTT 60.604 57.895 0.00 0.00 0.00 2.27
504 513 1.303317 GGCGGGAAGGAGCTTTTCA 60.303 57.895 12.29 0.00 0.00 2.69
505 514 0.893727 GGCGGGAAGGAGCTTTTCAA 60.894 55.000 12.29 0.00 0.00 2.69
506 515 0.958822 GCGGGAAGGAGCTTTTCAAA 59.041 50.000 12.29 0.00 0.00 2.69
507 516 1.068264 GCGGGAAGGAGCTTTTCAAAG 60.068 52.381 12.29 0.00 39.03 2.77
508 517 1.541588 CGGGAAGGAGCTTTTCAAAGG 59.458 52.381 12.29 0.00 36.53 3.11
509 518 1.273606 GGGAAGGAGCTTTTCAAAGGC 59.726 52.381 12.29 0.00 36.53 4.35
512 521 0.964700 AGGAGCTTTTCAAAGGCAGC 59.035 50.000 7.04 0.00 36.53 5.25
513 522 0.387750 GGAGCTTTTCAAAGGCAGCG 60.388 55.000 7.04 0.00 37.35 5.18
514 523 0.387750 GAGCTTTTCAAAGGCAGCGG 60.388 55.000 7.04 0.00 37.35 5.52
515 524 1.109323 AGCTTTTCAAAGGCAGCGGT 61.109 50.000 7.04 0.00 37.35 5.68
516 525 0.249447 GCTTTTCAAAGGCAGCGGTT 60.249 50.000 0.00 0.00 36.53 4.44
517 526 1.490621 CTTTTCAAAGGCAGCGGTTG 58.509 50.000 1.09 1.09 32.40 3.77
544 553 4.541648 CCGAGTCGGGGAGGGGAT 62.542 72.222 24.39 0.00 44.15 3.85
545 554 2.913060 CGAGTCGGGGAGGGGATC 60.913 72.222 4.10 0.00 0.00 3.36
546 555 2.913060 GAGTCGGGGAGGGGATCG 60.913 72.222 0.00 0.00 0.00 3.69
547 556 4.541648 AGTCGGGGAGGGGATCGG 62.542 72.222 0.00 0.00 0.00 4.18
552 561 4.964241 GGGAGGGGATCGGGGAGG 62.964 77.778 0.00 0.00 0.00 4.30
553 562 4.173701 GGAGGGGATCGGGGAGGT 62.174 72.222 0.00 0.00 0.00 3.85
554 563 2.524640 GAGGGGATCGGGGAGGTC 60.525 72.222 0.00 0.00 0.00 3.85
555 564 4.541648 AGGGGATCGGGGAGGTCG 62.542 72.222 0.00 0.00 0.00 4.79
564 573 3.703127 GGGAGGTCGCCGTTCCTT 61.703 66.667 5.30 0.00 33.83 3.36
565 574 2.353610 GGGAGGTCGCCGTTCCTTA 61.354 63.158 5.30 0.00 33.83 2.69
567 576 1.318158 GGAGGTCGCCGTTCCTTAGA 61.318 60.000 5.30 0.00 33.83 2.10
568 577 0.745468 GAGGTCGCCGTTCCTTAGAT 59.255 55.000 5.30 0.00 33.83 1.98
569 578 1.952296 GAGGTCGCCGTTCCTTAGATA 59.048 52.381 5.30 0.00 33.83 1.98
570 579 1.955080 AGGTCGCCGTTCCTTAGATAG 59.045 52.381 0.00 0.00 0.00 2.08
571 580 1.952296 GGTCGCCGTTCCTTAGATAGA 59.048 52.381 0.00 0.00 0.00 1.98
573 582 2.030981 GTCGCCGTTCCTTAGATAGAGG 60.031 54.545 0.00 0.00 35.53 3.69
574 583 1.269998 CGCCGTTCCTTAGATAGAGGG 59.730 57.143 0.00 0.00 34.93 4.30
575 584 1.619332 GCCGTTCCTTAGATAGAGGGG 59.381 57.143 0.00 0.00 34.93 4.79
576 585 2.755549 GCCGTTCCTTAGATAGAGGGGA 60.756 54.545 0.00 0.00 34.93 4.81
577 586 3.158676 CCGTTCCTTAGATAGAGGGGAG 58.841 54.545 0.00 0.00 34.93 4.30
578 587 3.181431 CCGTTCCTTAGATAGAGGGGAGA 60.181 52.174 0.00 0.00 34.93 3.71
579 588 4.076394 CGTTCCTTAGATAGAGGGGAGAG 58.924 52.174 0.00 0.00 34.93 3.20
580 589 4.202482 CGTTCCTTAGATAGAGGGGAGAGA 60.202 50.000 0.00 0.00 34.93 3.10
581 590 5.321927 GTTCCTTAGATAGAGGGGAGAGAG 58.678 50.000 0.00 0.00 34.93 3.20
582 591 4.845541 TCCTTAGATAGAGGGGAGAGAGA 58.154 47.826 0.00 0.00 34.93 3.10
583 592 4.849810 TCCTTAGATAGAGGGGAGAGAGAG 59.150 50.000 0.00 0.00 34.93 3.20
584 593 4.018415 CCTTAGATAGAGGGGAGAGAGAGG 60.018 54.167 0.00 0.00 0.00 3.69
585 594 2.358258 AGATAGAGGGGAGAGAGAGGG 58.642 57.143 0.00 0.00 0.00 4.30
586 595 0.783850 ATAGAGGGGAGAGAGAGGGC 59.216 60.000 0.00 0.00 0.00 5.19
587 596 1.710996 TAGAGGGGAGAGAGAGGGCG 61.711 65.000 0.00 0.00 0.00 6.13
588 597 3.024356 AGGGGAGAGAGAGGGCGA 61.024 66.667 0.00 0.00 0.00 5.54
589 598 2.200092 GGGGAGAGAGAGGGCGAT 59.800 66.667 0.00 0.00 0.00 4.58
590 599 2.206536 GGGGAGAGAGAGGGCGATG 61.207 68.421 0.00 0.00 0.00 3.84
591 600 1.456705 GGGAGAGAGAGGGCGATGT 60.457 63.158 0.00 0.00 0.00 3.06
592 601 1.460273 GGGAGAGAGAGGGCGATGTC 61.460 65.000 0.00 0.00 0.00 3.06
593 602 1.652012 GAGAGAGAGGGCGATGTCG 59.348 63.158 0.00 0.00 43.27 4.35
594 603 1.791103 GAGAGAGAGGGCGATGTCGG 61.791 65.000 4.44 0.00 40.23 4.79
595 604 2.835431 AGAGAGGGCGATGTCGGG 60.835 66.667 4.44 0.00 40.23 5.14
596 605 3.917760 GAGAGGGCGATGTCGGGG 61.918 72.222 4.44 0.00 40.23 5.73
597 606 4.458829 AGAGGGCGATGTCGGGGA 62.459 66.667 4.44 0.00 40.23 4.81
598 607 3.917760 GAGGGCGATGTCGGGGAG 61.918 72.222 4.44 0.00 40.23 4.30
603 612 3.781307 CGATGTCGGGGAGGCCAA 61.781 66.667 5.01 0.00 35.37 4.52
604 613 2.674754 GATGTCGGGGAGGCCAAA 59.325 61.111 5.01 0.00 0.00 3.28
605 614 1.001393 GATGTCGGGGAGGCCAAAA 60.001 57.895 5.01 0.00 0.00 2.44
606 615 0.610785 GATGTCGGGGAGGCCAAAAA 60.611 55.000 5.01 0.00 0.00 1.94
622 631 2.854522 AAAAACGGGGAGAGCATCG 58.145 52.632 0.00 0.00 42.67 3.84
623 632 0.676782 AAAAACGGGGAGAGCATCGG 60.677 55.000 0.00 0.00 42.67 4.18
624 633 2.536997 AAAACGGGGAGAGCATCGGG 62.537 60.000 0.00 0.00 42.67 5.14
627 636 2.768344 GGGGAGAGCATCGGGGAA 60.768 66.667 0.00 0.00 42.67 3.97
628 637 2.506472 GGGAGAGCATCGGGGAAC 59.494 66.667 0.00 0.00 42.67 3.62
629 638 2.066999 GGGAGAGCATCGGGGAACT 61.067 63.158 0.00 0.00 42.67 3.01
630 639 1.144936 GGAGAGCATCGGGGAACTG 59.855 63.158 0.00 0.00 42.67 3.16
631 640 1.522580 GAGAGCATCGGGGAACTGC 60.523 63.158 0.00 0.00 42.67 4.40
633 642 1.817099 GAGCATCGGGGAACTGCTG 60.817 63.158 0.33 0.00 45.79 4.41
634 643 2.825836 GCATCGGGGAACTGCTGG 60.826 66.667 0.00 0.00 33.41 4.85
635 644 2.989639 CATCGGGGAACTGCTGGA 59.010 61.111 0.00 0.00 36.33 3.86
636 645 1.299648 CATCGGGGAACTGCTGGAA 59.700 57.895 0.00 0.00 36.33 3.53
637 646 0.745845 CATCGGGGAACTGCTGGAAG 60.746 60.000 0.00 0.00 36.33 3.46
672 681 6.424176 GCTCTTTTCCTCTAAAATAGCGTT 57.576 37.500 5.28 0.00 43.25 4.84
673 682 6.251549 GCTCTTTTCCTCTAAAATAGCGTTG 58.748 40.000 5.28 0.00 43.25 4.10
674 683 6.092259 GCTCTTTTCCTCTAAAATAGCGTTGA 59.908 38.462 5.28 0.00 43.25 3.18
675 684 7.596749 TCTTTTCCTCTAAAATAGCGTTGAG 57.403 36.000 0.00 0.00 36.49 3.02
676 685 6.594159 TCTTTTCCTCTAAAATAGCGTTGAGG 59.406 38.462 0.00 0.00 41.57 3.86
677 686 4.402056 TCCTCTAAAATAGCGTTGAGGG 57.598 45.455 0.00 0.00 40.84 4.30
678 687 4.028131 TCCTCTAAAATAGCGTTGAGGGA 58.972 43.478 0.00 0.00 40.84 4.20
679 688 4.654262 TCCTCTAAAATAGCGTTGAGGGAT 59.346 41.667 0.00 0.00 40.84 3.85
680 689 4.752101 CCTCTAAAATAGCGTTGAGGGATG 59.248 45.833 0.00 0.00 37.87 3.51
681 690 4.703897 TCTAAAATAGCGTTGAGGGATGG 58.296 43.478 0.00 0.00 0.00 3.51
682 691 3.366052 AAAATAGCGTTGAGGGATGGT 57.634 42.857 0.00 0.00 0.00 3.55
683 692 3.366052 AAATAGCGTTGAGGGATGGTT 57.634 42.857 0.00 0.00 0.00 3.67
684 693 3.366052 AATAGCGTTGAGGGATGGTTT 57.634 42.857 0.00 0.00 0.00 3.27
685 694 2.107950 TAGCGTTGAGGGATGGTTTG 57.892 50.000 0.00 0.00 0.00 2.93
686 695 0.609131 AGCGTTGAGGGATGGTTTGG 60.609 55.000 0.00 0.00 0.00 3.28
687 696 1.595093 GCGTTGAGGGATGGTTTGGG 61.595 60.000 0.00 0.00 0.00 4.12
688 697 0.251165 CGTTGAGGGATGGTTTGGGT 60.251 55.000 0.00 0.00 0.00 4.51
689 698 1.256812 GTTGAGGGATGGTTTGGGTG 58.743 55.000 0.00 0.00 0.00 4.61
690 699 0.856982 TTGAGGGATGGTTTGGGTGT 59.143 50.000 0.00 0.00 0.00 4.16
691 700 0.112218 TGAGGGATGGTTTGGGTGTG 59.888 55.000 0.00 0.00 0.00 3.82
692 701 1.228862 AGGGATGGTTTGGGTGTGC 60.229 57.895 0.00 0.00 0.00 4.57
693 702 1.228862 GGGATGGTTTGGGTGTGCT 60.229 57.895 0.00 0.00 0.00 4.40
694 703 1.535204 GGGATGGTTTGGGTGTGCTG 61.535 60.000 0.00 0.00 0.00 4.41
695 704 1.290009 GATGGTTTGGGTGTGCTGC 59.710 57.895 0.00 0.00 0.00 5.25
696 705 1.152483 ATGGTTTGGGTGTGCTGCT 60.152 52.632 0.00 0.00 0.00 4.24
697 706 1.466025 ATGGTTTGGGTGTGCTGCTG 61.466 55.000 0.00 0.00 0.00 4.41
698 707 2.730094 GTTTGGGTGTGCTGCTGG 59.270 61.111 0.00 0.00 0.00 4.85
699 708 1.827789 GTTTGGGTGTGCTGCTGGA 60.828 57.895 0.00 0.00 0.00 3.86
700 709 1.827789 TTTGGGTGTGCTGCTGGAC 60.828 57.895 8.33 8.33 34.96 4.02
701 710 2.283143 TTTGGGTGTGCTGCTGGACT 62.283 55.000 15.83 0.00 35.45 3.85
702 711 2.113986 GGGTGTGCTGCTGGACTT 59.886 61.111 15.83 0.00 35.45 3.01
703 712 1.374947 GGGTGTGCTGCTGGACTTA 59.625 57.895 15.83 0.00 35.45 2.24
704 713 0.955919 GGGTGTGCTGCTGGACTTAC 60.956 60.000 15.83 6.94 35.45 2.34
705 714 0.035458 GGTGTGCTGCTGGACTTACT 59.965 55.000 15.83 0.00 35.45 2.24
706 715 1.433534 GTGTGCTGCTGGACTTACTC 58.566 55.000 15.83 0.00 35.45 2.59
707 716 1.001406 GTGTGCTGCTGGACTTACTCT 59.999 52.381 15.83 0.00 35.45 3.24
708 717 2.231478 GTGTGCTGCTGGACTTACTCTA 59.769 50.000 15.83 0.00 35.45 2.43
713 722 3.193691 GCTGCTGGACTTACTCTAAGACA 59.806 47.826 0.00 0.00 39.09 3.41
719 728 5.077564 TGGACTTACTCTAAGACAAGAGCA 58.922 41.667 0.86 0.00 45.81 4.26
733 742 4.061596 ACAAGAGCAAGCAGAGTTTCTAC 58.938 43.478 0.00 0.00 0.00 2.59
772 781 7.096551 AGCGTGTTTTAATTTTGGCTGATTAT 58.903 30.769 0.00 0.00 0.00 1.28
773 782 7.602265 AGCGTGTTTTAATTTTGGCTGATTATT 59.398 29.630 0.00 0.00 0.00 1.40
774 783 8.865001 GCGTGTTTTAATTTTGGCTGATTATTA 58.135 29.630 0.00 0.00 0.00 0.98
798 1900 3.563808 TGTGAGCTTACATTTCACGCTTT 59.436 39.130 7.32 0.00 43.12 3.51
839 1943 2.485426 CACGTGGTTTACTCTCTCCGTA 59.515 50.000 7.95 0.00 0.00 4.02
858 1962 9.921637 TCTCCGTATCAAATTGCTTAAATTTTT 57.078 25.926 0.00 0.00 44.41 1.94
877 1981 8.419076 AATTTTTGCAAAGTTAACTACACAGG 57.581 30.769 12.41 0.00 0.00 4.00
878 1982 6.518208 TTTTGCAAAGTTAACTACACAGGT 57.482 33.333 12.41 0.00 0.00 4.00
890 1994 2.671145 CACAGGTAGTGCTCCTCCA 58.329 57.895 0.00 0.00 42.15 3.86
891 1995 0.534412 CACAGGTAGTGCTCCTCCAG 59.466 60.000 0.00 0.00 42.15 3.86
905 2009 0.395311 CTCCAGCACCGGGAGTACTA 60.395 60.000 6.32 0.00 45.59 1.82
907 2011 0.683504 CCAGCACCGGGAGTACTACT 60.684 60.000 6.32 0.00 0.00 2.57
965 2126 4.059459 GTTCACTGCGCACCGACG 62.059 66.667 5.66 0.00 0.00 5.12
975 2136 2.637025 CACCGACGCCAAACCAAG 59.363 61.111 0.00 0.00 0.00 3.61
976 2137 3.284449 ACCGACGCCAAACCAAGC 61.284 61.111 0.00 0.00 0.00 4.01
977 2138 3.283684 CCGACGCCAAACCAAGCA 61.284 61.111 0.00 0.00 0.00 3.91
978 2139 2.051345 CGACGCCAAACCAAGCAC 60.051 61.111 0.00 0.00 0.00 4.40
1056 2300 2.360726 TCGCTGACCACTCCGCTA 60.361 61.111 0.00 0.00 0.00 4.26
1401 2645 1.032114 GTGGGGATTTCGCAGAAGGG 61.032 60.000 0.00 0.00 45.90 3.95
1411 2655 2.035442 GCAGAAGGGCTTGACGGAC 61.035 63.158 0.00 0.00 0.00 4.79
1458 2702 2.426023 GTCGTGGACCAAGCCTGT 59.574 61.111 2.02 0.00 0.00 4.00
1470 2714 1.089920 AAGCCTGTGTTGATGATCGC 58.910 50.000 0.00 0.00 0.00 4.58
1473 2717 1.349627 CTGTGTTGATGATCGCCGC 59.650 57.895 0.00 0.00 0.00 6.53
1525 2769 2.597510 GCTTTCAACGGGGTGCCT 60.598 61.111 0.00 0.00 0.00 4.75
1662 2943 5.162075 CCGAGCTACTGTAATGTAATAGCC 58.838 45.833 0.00 0.00 39.26 3.93
1791 3076 3.248363 CGCAAATAATCATCTCCGCTGAA 59.752 43.478 0.00 0.00 0.00 3.02
1854 3139 3.897505 TCATCTCTCAGAACCAGAACACA 59.102 43.478 0.00 0.00 0.00 3.72
1916 3206 8.161699 TGAAACAAAGTTTATACAGAACCTCC 57.838 34.615 0.00 0.00 0.00 4.30
1996 3292 3.711704 AGACTATCCGTGGATCCAAATGT 59.288 43.478 18.20 9.68 36.17 2.71
2012 3310 6.744112 TCCAAATGTTATCACTGAACCAAAC 58.256 36.000 0.00 0.00 0.00 2.93
2057 3355 4.740695 AGTTTTAGTCGCTATCATCTTCGC 59.259 41.667 0.00 0.00 0.00 4.70
2076 3374 0.440371 CCTTCTCGCGTTTCAAGCTC 59.560 55.000 5.77 0.00 0.00 4.09
2137 3450 3.367292 CCATGACATTGTTACCACCTTGC 60.367 47.826 0.00 0.00 0.00 4.01
2230 3543 2.930682 GCATAAAGAGTGGAAGACCGTC 59.069 50.000 0.00 0.00 39.42 4.79
2321 3634 4.959631 TCGTTTCTTATTCACACGACAC 57.040 40.909 0.00 0.00 35.05 3.67
2332 3646 3.702330 TCACACGACACACTCAGTTTAG 58.298 45.455 0.00 0.00 0.00 1.85
2535 3874 8.696374 TCCTAAGGTCAAAGATTATAGTCAGTG 58.304 37.037 0.00 0.00 0.00 3.66
2541 3880 8.200792 GGTCAAAGATTATAGTCAGTGAGTCAT 58.799 37.037 3.04 0.13 0.00 3.06
2651 4036 8.853126 ACACAAACTGTTCACTAGTGTATACTA 58.147 33.333 21.99 0.00 37.01 1.82
2711 4097 8.570068 AGTAACTTGAACTAACCTCACAAAAA 57.430 30.769 0.00 0.00 0.00 1.94
2714 4100 7.321745 ACTTGAACTAACCTCACAAAAAGAG 57.678 36.000 0.00 0.00 0.00 2.85
2973 4360 1.212688 CCCACATTCTGGTATCCTGCA 59.787 52.381 0.00 0.00 38.60 4.41
3140 4527 6.648879 GCATAATGGCCTAAAATCCTACAA 57.351 37.500 3.32 0.00 0.00 2.41
3231 4780 8.365647 TGGAGTAAATCGAAGTAGAAAAGAAGT 58.634 33.333 0.00 0.00 0.00 3.01
3351 4932 5.289193 CCAGAACACTGTTTCAACACAATTG 59.711 40.000 3.24 3.24 34.70 2.32
3358 4939 6.974048 CACTGTTTCAACACAATTGAATCTCA 59.026 34.615 13.59 0.65 38.12 3.27
3368 4949 9.918630 AACACAATTGAATCTCAGGATAAAAAG 57.081 29.630 13.59 0.00 0.00 2.27
3389 4970 5.104259 AGATTCCAAGAACCATAGTGGAC 57.896 43.478 2.45 0.00 40.96 4.02
3539 5450 5.992217 GGTGTAGTTTCTGACACAAGAAGAT 59.008 40.000 7.40 0.00 46.34 2.40
3561 5474 8.859236 AGATCATCATATTGTAAACAGGATGG 57.141 34.615 0.00 0.00 43.62 3.51
3606 5519 0.602905 GGAAGACCACAACCCAGACG 60.603 60.000 0.00 0.00 35.97 4.18
3675 5588 1.599542 GGCTGTATTGTGCCGAATCTC 59.400 52.381 0.00 0.00 39.71 2.75
3768 5967 3.190327 TCGTGGACATGTATTTTTGGCTG 59.810 43.478 0.00 0.00 0.00 4.85
3808 6056 5.397360 ACTTCTCCCAAGTGGATCAAAAAT 58.603 37.500 0.00 0.00 44.07 1.82
3832 6080 8.779354 ATAACTGAAACAGACCAGATTTCTAC 57.221 34.615 5.76 0.00 35.18 2.59
3862 6110 2.704065 CACGAATTACCCCCATCCTACT 59.296 50.000 0.00 0.00 0.00 2.57
3903 6151 2.163818 TCACGAAAAGCACTAGTGGG 57.836 50.000 23.95 0.00 33.98 4.61
3920 6168 1.413812 TGGGACACATCTCATGGATCG 59.586 52.381 0.00 0.00 26.79 3.69
3965 6216 2.896443 CCGAGGGGAACAGAGAGC 59.104 66.667 0.00 0.00 34.06 4.09
3969 6220 4.475135 GGGGAACAGAGAGCGGGC 62.475 72.222 0.00 0.00 0.00 6.13
3970 6221 4.821589 GGGAACAGAGAGCGGGCG 62.822 72.222 0.00 0.00 0.00 6.13
3971 6222 4.070552 GGAACAGAGAGCGGGCGT 62.071 66.667 0.00 0.00 0.00 5.68
4172 6425 1.805945 GATGTCGTCCCACTGCGTC 60.806 63.158 0.00 0.00 0.00 5.19
4285 6546 2.436115 GAAGCGGAAGGGGAACGG 60.436 66.667 0.00 0.00 0.00 4.44
4368 6630 4.267503 GGATCGGAGCGGACGGAC 62.268 72.222 0.00 0.00 0.00 4.79
4451 6713 1.202302 ACATATCGAGTGTCACTGCGG 60.202 52.381 11.04 0.00 0.00 5.69
4617 6930 3.593247 GCTCGATGCAATGTGTGAC 57.407 52.632 0.00 0.00 42.31 3.67
4775 7088 8.827677 GTTAGGAAATACACCATGACTGTAATC 58.172 37.037 0.00 3.34 0.00 1.75
4896 7213 8.888716 AGTTACAGAGAGAGTATATGATATGCG 58.111 37.037 0.00 0.00 0.00 4.73
4899 7216 4.878971 AGAGAGAGTATATGATATGCGCGT 59.121 41.667 8.43 7.55 0.00 6.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.676839 AGAGTGCATTTTCGATGAGCTG 59.323 45.455 0.00 0.00 0.00 4.24
4 5 4.183865 TGGTAGAGTGCATTTTCGATGAG 58.816 43.478 0.00 0.00 0.00 2.90
8 9 4.759693 ACAAATGGTAGAGTGCATTTTCGA 59.240 37.500 0.00 0.00 0.00 3.71
9 10 4.853196 CACAAATGGTAGAGTGCATTTTCG 59.147 41.667 0.00 0.00 0.00 3.46
10 11 6.012658 TCACAAATGGTAGAGTGCATTTTC 57.987 37.500 0.00 0.00 32.25 2.29
17 18 4.641396 TGGACTTCACAAATGGTAGAGTG 58.359 43.478 0.00 0.00 0.00 3.51
43 44 3.315191 GTGTGTTGCAACTTATGACTGGT 59.685 43.478 28.61 0.00 0.00 4.00
47 48 3.315191 ACTGGTGTGTTGCAACTTATGAC 59.685 43.478 28.61 18.58 35.37 3.06
51 52 3.616219 AGAACTGGTGTGTTGCAACTTA 58.384 40.909 28.61 15.52 35.37 2.24
73 81 5.181690 TGAACTTTGTTTCCTTGGAATCG 57.818 39.130 2.65 0.00 0.00 3.34
102 110 2.580601 GCCCACGGTGAGTACCTGT 61.581 63.158 10.28 0.00 45.22 4.00
103 111 1.899437 ATGCCCACGGTGAGTACCTG 61.899 60.000 10.28 0.00 45.22 4.00
104 112 1.612442 ATGCCCACGGTGAGTACCT 60.612 57.895 10.28 0.00 45.22 3.08
124 132 1.001378 GACTGTTGCCACCATGTTCAC 60.001 52.381 0.00 0.00 0.00 3.18
127 135 1.321474 CTGACTGTTGCCACCATGTT 58.679 50.000 0.00 0.00 0.00 2.71
131 139 0.250858 CATCCTGACTGTTGCCACCA 60.251 55.000 0.00 0.00 0.00 4.17
139 147 0.891373 CTCACCGTCATCCTGACTGT 59.109 55.000 5.79 2.56 43.91 3.55
143 151 3.298958 GGCTCACCGTCATCCTGA 58.701 61.111 0.00 0.00 0.00 3.86
161 169 1.346068 CGAATCCCCCTCCAGATTCTC 59.654 57.143 10.13 0.00 44.03 2.87
162 170 1.428869 CGAATCCCCCTCCAGATTCT 58.571 55.000 10.13 0.00 44.03 2.40
164 172 1.709994 GGCGAATCCCCCTCCAGATT 61.710 60.000 0.00 0.00 35.43 2.40
209 217 1.616865 CCCATACGCGAGATCCCTTTA 59.383 52.381 15.93 0.00 0.00 1.85
210 218 0.393077 CCCATACGCGAGATCCCTTT 59.607 55.000 15.93 0.00 0.00 3.11
247 255 1.062886 TCCTGAATCCCATCTCGTCCT 60.063 52.381 0.00 0.00 0.00 3.85
248 256 1.414158 TCCTGAATCCCATCTCGTCC 58.586 55.000 0.00 0.00 0.00 4.79
249 257 2.224161 CCTTCCTGAATCCCATCTCGTC 60.224 54.545 0.00 0.00 0.00 4.20
250 258 1.765314 CCTTCCTGAATCCCATCTCGT 59.235 52.381 0.00 0.00 0.00 4.18
251 259 1.071385 CCCTTCCTGAATCCCATCTCG 59.929 57.143 0.00 0.00 0.00 4.04
252 260 2.131023 ACCCTTCCTGAATCCCATCTC 58.869 52.381 0.00 0.00 0.00 2.75
253 261 2.293598 ACCCTTCCTGAATCCCATCT 57.706 50.000 0.00 0.00 0.00 2.90
254 262 3.388552 AAACCCTTCCTGAATCCCATC 57.611 47.619 0.00 0.00 0.00 3.51
255 263 4.387891 CCATAAACCCTTCCTGAATCCCAT 60.388 45.833 0.00 0.00 0.00 4.00
256 264 3.052944 CCATAAACCCTTCCTGAATCCCA 60.053 47.826 0.00 0.00 0.00 4.37
267 275 3.309121 CCATCACCAGTCCATAAACCCTT 60.309 47.826 0.00 0.00 0.00 3.95
275 283 1.842562 CCTCTTCCATCACCAGTCCAT 59.157 52.381 0.00 0.00 0.00 3.41
279 287 0.326264 GTGCCTCTTCCATCACCAGT 59.674 55.000 0.00 0.00 0.00 4.00
280 288 0.325933 TGTGCCTCTTCCATCACCAG 59.674 55.000 0.00 0.00 0.00 4.00
281 289 0.994247 ATGTGCCTCTTCCATCACCA 59.006 50.000 0.00 0.00 0.00 4.17
282 290 3.118261 TCTTATGTGCCTCTTCCATCACC 60.118 47.826 0.00 0.00 0.00 4.02
283 291 4.125703 CTCTTATGTGCCTCTTCCATCAC 58.874 47.826 0.00 0.00 0.00 3.06
284 292 3.432749 GCTCTTATGTGCCTCTTCCATCA 60.433 47.826 0.00 0.00 0.00 3.07
285 293 3.137533 GCTCTTATGTGCCTCTTCCATC 58.862 50.000 0.00 0.00 0.00 3.51
286 294 2.507058 TGCTCTTATGTGCCTCTTCCAT 59.493 45.455 0.81 0.00 32.27 3.41
287 295 1.908619 TGCTCTTATGTGCCTCTTCCA 59.091 47.619 0.81 0.00 32.27 3.53
288 296 2.698855 TGCTCTTATGTGCCTCTTCC 57.301 50.000 0.81 0.00 32.27 3.46
289 297 3.604582 ACTTGCTCTTATGTGCCTCTTC 58.395 45.455 0.81 0.00 32.27 2.87
290 298 3.604582 GACTTGCTCTTATGTGCCTCTT 58.395 45.455 0.81 0.00 32.27 2.85
291 299 2.093235 GGACTTGCTCTTATGTGCCTCT 60.093 50.000 0.81 0.00 32.27 3.69
292 300 2.284190 GGACTTGCTCTTATGTGCCTC 58.716 52.381 0.81 0.00 32.27 4.70
293 301 1.630369 TGGACTTGCTCTTATGTGCCT 59.370 47.619 0.81 0.00 32.27 4.75
294 302 2.113860 TGGACTTGCTCTTATGTGCC 57.886 50.000 0.81 0.00 32.27 5.01
295 303 2.813754 TGTTGGACTTGCTCTTATGTGC 59.186 45.455 0.00 0.00 0.00 4.57
296 304 5.633830 ATTGTTGGACTTGCTCTTATGTG 57.366 39.130 0.00 0.00 0.00 3.21
297 305 6.006449 AGAATTGTTGGACTTGCTCTTATGT 58.994 36.000 0.00 0.00 0.00 2.29
298 306 6.404074 GGAGAATTGTTGGACTTGCTCTTATG 60.404 42.308 0.00 0.00 0.00 1.90
299 307 5.649831 GGAGAATTGTTGGACTTGCTCTTAT 59.350 40.000 0.00 0.00 0.00 1.73
300 308 5.003804 GGAGAATTGTTGGACTTGCTCTTA 58.996 41.667 0.00 0.00 0.00 2.10
301 309 3.823304 GGAGAATTGTTGGACTTGCTCTT 59.177 43.478 0.00 0.00 0.00 2.85
314 322 6.805150 AGGGGAGAAAAATTAGGAGAATTGT 58.195 36.000 0.00 0.00 0.00 2.71
321 329 9.460413 TTGAGATATAGGGGAGAAAAATTAGGA 57.540 33.333 0.00 0.00 0.00 2.94
359 367 9.837681 ATTTTTAGGAGGGAATCTTTTTAAGGA 57.162 29.630 0.00 0.00 0.00 3.36
374 382 4.268359 AGAGCTGAGCAATTTTTAGGAGG 58.732 43.478 7.39 0.00 0.00 4.30
376 384 4.878397 GCTAGAGCTGAGCAATTTTTAGGA 59.122 41.667 7.39 0.00 39.84 2.94
377 385 4.637534 TGCTAGAGCTGAGCAATTTTTAGG 59.362 41.667 15.82 0.00 46.71 2.69
392 400 2.605837 GTTAGGGGAACTGCTAGAGC 57.394 55.000 0.00 0.00 42.50 4.09
453 462 6.930667 TCGCCTCTTTAAAAACTAGTTGTT 57.069 33.333 15.31 15.31 41.29 2.83
454 463 6.017357 CCTTCGCCTCTTTAAAAACTAGTTGT 60.017 38.462 9.34 0.00 0.00 3.32
455 464 6.371389 CCTTCGCCTCTTTAAAAACTAGTTG 58.629 40.000 9.34 0.00 0.00 3.16
467 476 1.227853 ACAACGCCTTCGCCTCTTT 60.228 52.632 0.00 0.00 39.84 2.52
470 479 3.423154 CCACAACGCCTTCGCCTC 61.423 66.667 0.00 0.00 39.84 4.70
476 485 4.572571 TTCCCGCCACAACGCCTT 62.573 61.111 0.00 0.00 0.00 4.35
480 489 2.742372 CTCCTTCCCGCCACAACG 60.742 66.667 0.00 0.00 0.00 4.10
482 491 2.351924 AAAGCTCCTTCCCGCCACAA 62.352 55.000 0.00 0.00 0.00 3.33
484 493 1.587043 GAAAAGCTCCTTCCCGCCAC 61.587 60.000 0.00 0.00 0.00 5.01
485 494 1.303317 GAAAAGCTCCTTCCCGCCA 60.303 57.895 0.00 0.00 0.00 5.69
487 496 0.958822 TTTGAAAAGCTCCTTCCCGC 59.041 50.000 6.15 0.00 0.00 6.13
488 497 1.541588 CCTTTGAAAAGCTCCTTCCCG 59.458 52.381 6.15 0.00 34.69 5.14
489 498 1.273606 GCCTTTGAAAAGCTCCTTCCC 59.726 52.381 6.15 0.00 34.69 3.97
491 500 2.608998 GCTGCCTTTGAAAAGCTCCTTC 60.609 50.000 0.00 0.00 34.69 3.46
492 501 1.342496 GCTGCCTTTGAAAAGCTCCTT 59.658 47.619 0.00 0.00 34.69 3.36
493 502 0.964700 GCTGCCTTTGAAAAGCTCCT 59.035 50.000 0.00 0.00 34.69 3.69
494 503 0.387750 CGCTGCCTTTGAAAAGCTCC 60.388 55.000 0.00 0.00 34.69 4.70
495 504 0.387750 CCGCTGCCTTTGAAAAGCTC 60.388 55.000 0.00 0.00 34.69 4.09
496 505 1.109323 ACCGCTGCCTTTGAAAAGCT 61.109 50.000 0.00 0.00 34.69 3.74
497 506 0.249447 AACCGCTGCCTTTGAAAAGC 60.249 50.000 0.00 0.00 34.69 3.51
498 507 1.490621 CAACCGCTGCCTTTGAAAAG 58.509 50.000 2.50 0.00 35.79 2.27
499 508 0.529555 GCAACCGCTGCCTTTGAAAA 60.530 50.000 11.04 0.00 46.13 2.29
500 509 1.067250 GCAACCGCTGCCTTTGAAA 59.933 52.632 11.04 0.00 46.13 2.69
528 537 2.913060 GATCCCCTCCCCGACTCG 60.913 72.222 0.00 0.00 0.00 4.18
529 538 2.913060 CGATCCCCTCCCCGACTC 60.913 72.222 0.00 0.00 0.00 3.36
530 539 4.541648 CCGATCCCCTCCCCGACT 62.542 72.222 0.00 0.00 0.00 4.18
534 543 4.964241 CTCCCCGATCCCCTCCCC 62.964 77.778 0.00 0.00 0.00 4.81
535 544 4.964241 CCTCCCCGATCCCCTCCC 62.964 77.778 0.00 0.00 0.00 4.30
537 546 2.524640 GACCTCCCCGATCCCCTC 60.525 72.222 0.00 0.00 0.00 4.30
547 556 2.294132 CTAAGGAACGGCGACCTCCC 62.294 65.000 24.04 13.11 35.25 4.30
548 557 1.141234 CTAAGGAACGGCGACCTCC 59.859 63.158 24.04 20.11 35.25 4.30
549 558 0.745468 ATCTAAGGAACGGCGACCTC 59.255 55.000 24.04 13.41 35.25 3.85
550 559 1.955080 CTATCTAAGGAACGGCGACCT 59.045 52.381 16.62 18.87 38.23 3.85
552 561 2.030981 CCTCTATCTAAGGAACGGCGAC 60.031 54.545 16.62 7.14 35.83 5.19
553 562 2.228059 CCTCTATCTAAGGAACGGCGA 58.772 52.381 16.62 0.00 35.83 5.54
554 563 1.269998 CCCTCTATCTAAGGAACGGCG 59.730 57.143 4.80 4.80 35.83 6.46
555 564 1.619332 CCCCTCTATCTAAGGAACGGC 59.381 57.143 0.00 0.00 35.83 5.68
556 565 3.158676 CTCCCCTCTATCTAAGGAACGG 58.841 54.545 0.00 0.00 35.83 4.44
557 566 4.076394 CTCTCCCCTCTATCTAAGGAACG 58.924 52.174 0.00 0.00 35.83 3.95
559 568 5.236334 TCTCTCTCCCCTCTATCTAAGGAA 58.764 45.833 0.00 0.00 35.83 3.36
560 569 4.845541 TCTCTCTCCCCTCTATCTAAGGA 58.154 47.826 0.00 0.00 35.83 3.36
561 570 4.018415 CCTCTCTCTCCCCTCTATCTAAGG 60.018 54.167 0.00 0.00 0.00 2.69
562 571 4.018415 CCCTCTCTCTCCCCTCTATCTAAG 60.018 54.167 0.00 0.00 0.00 2.18
563 572 3.920197 CCCTCTCTCTCCCCTCTATCTAA 59.080 52.174 0.00 0.00 0.00 2.10
564 573 3.537337 CCCTCTCTCTCCCCTCTATCTA 58.463 54.545 0.00 0.00 0.00 1.98
565 574 2.358258 CCCTCTCTCTCCCCTCTATCT 58.642 57.143 0.00 0.00 0.00 1.98
567 576 0.783850 GCCCTCTCTCTCCCCTCTAT 59.216 60.000 0.00 0.00 0.00 1.98
568 577 1.710996 CGCCCTCTCTCTCCCCTCTA 61.711 65.000 0.00 0.00 0.00 2.43
569 578 3.024217 GCCCTCTCTCTCCCCTCT 58.976 66.667 0.00 0.00 0.00 3.69
570 579 2.366153 ATCGCCCTCTCTCTCCCCTC 62.366 65.000 0.00 0.00 0.00 4.30
571 580 2.399607 ATCGCCCTCTCTCTCCCCT 61.400 63.158 0.00 0.00 0.00 4.79
573 582 1.456705 ACATCGCCCTCTCTCTCCC 60.457 63.158 0.00 0.00 0.00 4.30
574 583 1.791103 CGACATCGCCCTCTCTCTCC 61.791 65.000 0.00 0.00 0.00 3.71
575 584 1.652012 CGACATCGCCCTCTCTCTC 59.348 63.158 0.00 0.00 0.00 3.20
576 585 1.826054 CCGACATCGCCCTCTCTCT 60.826 63.158 0.00 0.00 38.18 3.10
577 586 2.725008 CCGACATCGCCCTCTCTC 59.275 66.667 0.00 0.00 38.18 3.20
578 587 2.835431 CCCGACATCGCCCTCTCT 60.835 66.667 0.00 0.00 38.18 3.10
579 588 3.917760 CCCCGACATCGCCCTCTC 61.918 72.222 0.00 0.00 38.18 3.20
580 589 4.458829 TCCCCGACATCGCCCTCT 62.459 66.667 0.00 0.00 38.18 3.69
581 590 3.917760 CTCCCCGACATCGCCCTC 61.918 72.222 0.00 0.00 38.18 4.30
586 595 2.813226 TTTTGGCCTCCCCGACATCG 62.813 60.000 3.32 0.00 35.87 3.84
587 596 0.610785 TTTTTGGCCTCCCCGACATC 60.611 55.000 3.32 0.00 35.87 3.06
588 597 1.462928 TTTTTGGCCTCCCCGACAT 59.537 52.632 3.32 0.00 35.87 3.06
589 598 2.927864 TTTTTGGCCTCCCCGACA 59.072 55.556 3.32 0.00 35.87 4.35
604 613 0.676782 CCGATGCTCTCCCCGTTTTT 60.677 55.000 0.00 0.00 0.00 1.94
605 614 1.078426 CCGATGCTCTCCCCGTTTT 60.078 57.895 0.00 0.00 0.00 2.43
606 615 2.584608 CCGATGCTCTCCCCGTTT 59.415 61.111 0.00 0.00 0.00 3.60
607 616 3.470888 CCCGATGCTCTCCCCGTT 61.471 66.667 0.00 0.00 0.00 4.44
610 619 2.768344 TTCCCCGATGCTCTCCCC 60.768 66.667 0.00 0.00 0.00 4.81
611 620 2.066999 AGTTCCCCGATGCTCTCCC 61.067 63.158 0.00 0.00 0.00 4.30
612 621 1.144936 CAGTTCCCCGATGCTCTCC 59.855 63.158 0.00 0.00 0.00 3.71
613 622 1.522580 GCAGTTCCCCGATGCTCTC 60.523 63.158 0.00 0.00 37.00 3.20
614 623 2.586792 GCAGTTCCCCGATGCTCT 59.413 61.111 0.00 0.00 37.00 4.09
617 626 2.819984 TTCCAGCAGTTCCCCGATGC 62.820 60.000 0.00 0.00 40.29 3.91
618 627 0.745845 CTTCCAGCAGTTCCCCGATG 60.746 60.000 0.00 0.00 0.00 3.84
619 628 1.604378 CTTCCAGCAGTTCCCCGAT 59.396 57.895 0.00 0.00 0.00 4.18
620 629 3.068881 CTTCCAGCAGTTCCCCGA 58.931 61.111 0.00 0.00 0.00 5.14
621 630 2.747855 GCTTCCAGCAGTTCCCCG 60.748 66.667 0.00 0.00 41.89 5.73
650 659 7.201565 CCTCAACGCTATTTTAGAGGAAAAGAG 60.202 40.741 0.00 1.09 45.32 2.85
651 660 6.594159 CCTCAACGCTATTTTAGAGGAAAAGA 59.406 38.462 0.00 0.00 44.12 2.52
652 661 6.183360 CCCTCAACGCTATTTTAGAGGAAAAG 60.183 42.308 7.80 0.00 44.12 2.27
653 662 5.646360 CCCTCAACGCTATTTTAGAGGAAAA 59.354 40.000 7.80 0.00 44.12 2.29
654 663 5.046159 TCCCTCAACGCTATTTTAGAGGAAA 60.046 40.000 7.80 0.00 44.12 3.13
655 664 4.468510 TCCCTCAACGCTATTTTAGAGGAA 59.531 41.667 7.80 0.00 44.12 3.36
656 665 4.028131 TCCCTCAACGCTATTTTAGAGGA 58.972 43.478 7.80 0.00 44.12 3.71
657 666 4.402056 TCCCTCAACGCTATTTTAGAGG 57.598 45.455 0.00 0.00 41.72 3.69
658 667 4.752101 CCATCCCTCAACGCTATTTTAGAG 59.248 45.833 0.00 0.00 0.00 2.43
659 668 4.163458 ACCATCCCTCAACGCTATTTTAGA 59.837 41.667 0.00 0.00 0.00 2.10
660 669 4.451900 ACCATCCCTCAACGCTATTTTAG 58.548 43.478 0.00 0.00 0.00 1.85
661 670 4.497291 ACCATCCCTCAACGCTATTTTA 57.503 40.909 0.00 0.00 0.00 1.52
662 671 3.366052 ACCATCCCTCAACGCTATTTT 57.634 42.857 0.00 0.00 0.00 1.82
663 672 3.366052 AACCATCCCTCAACGCTATTT 57.634 42.857 0.00 0.00 0.00 1.40
664 673 3.016736 CAAACCATCCCTCAACGCTATT 58.983 45.455 0.00 0.00 0.00 1.73
665 674 2.643551 CAAACCATCCCTCAACGCTAT 58.356 47.619 0.00 0.00 0.00 2.97
666 675 1.339631 CCAAACCATCCCTCAACGCTA 60.340 52.381 0.00 0.00 0.00 4.26
667 676 0.609131 CCAAACCATCCCTCAACGCT 60.609 55.000 0.00 0.00 0.00 5.07
668 677 1.595093 CCCAAACCATCCCTCAACGC 61.595 60.000 0.00 0.00 0.00 4.84
669 678 0.251165 ACCCAAACCATCCCTCAACG 60.251 55.000 0.00 0.00 0.00 4.10
670 679 1.256812 CACCCAAACCATCCCTCAAC 58.743 55.000 0.00 0.00 0.00 3.18
671 680 0.856982 ACACCCAAACCATCCCTCAA 59.143 50.000 0.00 0.00 0.00 3.02
672 681 0.112218 CACACCCAAACCATCCCTCA 59.888 55.000 0.00 0.00 0.00 3.86
673 682 1.250840 GCACACCCAAACCATCCCTC 61.251 60.000 0.00 0.00 0.00 4.30
674 683 1.228862 GCACACCCAAACCATCCCT 60.229 57.895 0.00 0.00 0.00 4.20
675 684 1.228862 AGCACACCCAAACCATCCC 60.229 57.895 0.00 0.00 0.00 3.85
676 685 1.966762 CAGCACACCCAAACCATCC 59.033 57.895 0.00 0.00 0.00 3.51
677 686 1.181098 AGCAGCACACCCAAACCATC 61.181 55.000 0.00 0.00 0.00 3.51
678 687 1.152483 AGCAGCACACCCAAACCAT 60.152 52.632 0.00 0.00 0.00 3.55
679 688 2.126596 CAGCAGCACACCCAAACCA 61.127 57.895 0.00 0.00 0.00 3.67
680 689 2.730094 CAGCAGCACACCCAAACC 59.270 61.111 0.00 0.00 0.00 3.27
681 690 1.827789 TCCAGCAGCACACCCAAAC 60.828 57.895 0.00 0.00 0.00 2.93
682 691 1.827789 GTCCAGCAGCACACCCAAA 60.828 57.895 0.00 0.00 0.00 3.28
683 692 2.203337 GTCCAGCAGCACACCCAA 60.203 61.111 0.00 0.00 0.00 4.12
684 693 1.414866 TAAGTCCAGCAGCACACCCA 61.415 55.000 0.00 0.00 0.00 4.51
685 694 0.955919 GTAAGTCCAGCAGCACACCC 60.956 60.000 0.00 0.00 0.00 4.61
686 695 0.035458 AGTAAGTCCAGCAGCACACC 59.965 55.000 0.00 0.00 0.00 4.16
687 696 1.001406 AGAGTAAGTCCAGCAGCACAC 59.999 52.381 0.00 0.00 0.00 3.82
688 697 1.342074 AGAGTAAGTCCAGCAGCACA 58.658 50.000 0.00 0.00 0.00 4.57
689 698 3.193691 TCTTAGAGTAAGTCCAGCAGCAC 59.806 47.826 0.00 0.00 37.10 4.40
690 699 3.193691 GTCTTAGAGTAAGTCCAGCAGCA 59.806 47.826 0.00 0.00 37.10 4.41
691 700 3.193691 TGTCTTAGAGTAAGTCCAGCAGC 59.806 47.826 0.00 0.00 37.10 5.25
692 701 5.184096 TCTTGTCTTAGAGTAAGTCCAGCAG 59.816 44.000 6.20 0.00 37.10 4.24
693 702 5.077564 TCTTGTCTTAGAGTAAGTCCAGCA 58.922 41.667 6.20 0.00 37.10 4.41
694 703 5.646577 TCTTGTCTTAGAGTAAGTCCAGC 57.353 43.478 6.20 0.00 37.10 4.85
695 704 5.184096 TGCTCTTGTCTTAGAGTAAGTCCAG 59.816 44.000 0.00 0.23 42.93 3.86
696 705 5.077564 TGCTCTTGTCTTAGAGTAAGTCCA 58.922 41.667 0.00 3.39 42.93 4.02
697 706 5.646577 TGCTCTTGTCTTAGAGTAAGTCC 57.353 43.478 0.00 1.52 42.93 3.85
701 710 5.243954 TCTGCTTGCTCTTGTCTTAGAGTAA 59.756 40.000 0.00 0.00 42.23 2.24
702 711 4.767409 TCTGCTTGCTCTTGTCTTAGAGTA 59.233 41.667 0.00 0.00 42.93 2.59
703 712 3.576118 TCTGCTTGCTCTTGTCTTAGAGT 59.424 43.478 0.00 0.00 42.93 3.24
704 713 4.175516 CTCTGCTTGCTCTTGTCTTAGAG 58.824 47.826 0.00 0.00 43.66 2.43
705 714 3.576118 ACTCTGCTTGCTCTTGTCTTAGA 59.424 43.478 0.00 0.00 0.00 2.10
706 715 3.924144 ACTCTGCTTGCTCTTGTCTTAG 58.076 45.455 0.00 0.00 0.00 2.18
707 716 4.342862 AACTCTGCTTGCTCTTGTCTTA 57.657 40.909 0.00 0.00 0.00 2.10
708 717 2.926778 ACTCTGCTTGCTCTTGTCTT 57.073 45.000 0.00 0.00 0.00 3.01
713 722 3.326297 AGGTAGAAACTCTGCTTGCTCTT 59.674 43.478 0.00 0.00 29.49 2.85
719 728 5.184287 GTCACTCTAGGTAGAAACTCTGCTT 59.816 44.000 0.00 0.00 29.49 3.91
733 742 0.457509 CACGCTGCAGTCACTCTAGG 60.458 60.000 16.64 0.00 0.00 3.02
772 781 5.411361 AGCGTGAAATGTAAGCTCACATTAA 59.589 36.000 15.71 4.92 46.00 1.40
773 782 4.935205 AGCGTGAAATGTAAGCTCACATTA 59.065 37.500 15.71 0.00 46.00 1.90
798 1900 5.201910 CGTGAAAGCGTAGACAAATTTTGA 58.798 37.500 15.81 0.00 0.00 2.69
888 1992 0.683504 AGTAGTACTCCCGGTGCTGG 60.684 60.000 0.00 0.00 40.92 4.85
889 1993 0.456221 CAGTAGTACTCCCGGTGCTG 59.544 60.000 0.00 0.00 40.92 4.41
890 1994 0.039326 ACAGTAGTACTCCCGGTGCT 59.961 55.000 0.00 0.00 43.15 4.40
891 1995 1.403323 GTACAGTAGTACTCCCGGTGC 59.597 57.143 0.00 0.00 45.66 5.01
900 2004 7.651704 GGCTACTCTACACTAGTACAGTAGTAC 59.348 44.444 20.25 14.35 44.76 2.73
901 2005 7.343057 TGGCTACTCTACACTAGTACAGTAGTA 59.657 40.741 20.25 15.43 44.76 1.82
902 2006 6.155910 TGGCTACTCTACACTAGTACAGTAGT 59.844 42.308 20.25 15.24 44.76 2.73
905 2009 5.432680 TGGCTACTCTACACTAGTACAGT 57.567 43.478 0.00 0.00 38.32 3.55
907 2011 7.147602 TGTCTATGGCTACTCTACACTAGTACA 60.148 40.741 0.00 0.00 0.00 2.90
965 2126 3.989787 CCCGGTGCTTGGTTTGGC 61.990 66.667 0.00 0.00 0.00 4.52
966 2127 1.595093 GATCCCGGTGCTTGGTTTGG 61.595 60.000 0.00 0.00 0.00 3.28
968 2129 1.304134 GGATCCCGGTGCTTGGTTT 60.304 57.895 0.00 0.00 0.00 3.27
970 2131 4.096003 CGGATCCCGGTGCTTGGT 62.096 66.667 6.06 0.00 44.15 3.67
1390 2634 1.667830 CGTCAAGCCCTTCTGCGAA 60.668 57.895 0.00 0.00 36.02 4.70
1392 2636 3.121030 CCGTCAAGCCCTTCTGCG 61.121 66.667 0.00 0.00 36.02 5.18
1401 2645 1.468914 GGAAAATCCAGTCCGTCAAGC 59.531 52.381 0.00 0.00 36.28 4.01
1411 2655 1.999051 CGCGACGAGGAAAATCCAG 59.001 57.895 0.00 0.00 39.61 3.86
1458 2702 2.889988 CGGCGGCGATCATCAACA 60.890 61.111 29.19 0.00 0.00 3.33
1525 2769 0.668401 TCGACGACAGTAGCGACTCA 60.668 55.000 0.00 0.00 31.73 3.41
1662 2943 6.536941 GCTTCTTCTTGATAGTACAAAGGAGG 59.463 42.308 0.00 0.00 0.00 4.30
1736 3017 4.456911 ACTGCACACACATTTATTCTGGAG 59.543 41.667 0.00 0.00 0.00 3.86
1791 3076 8.370182 ACTTGCATACTCAAATGGAAAATTTCT 58.630 29.630 5.65 0.00 36.85 2.52
1854 3139 4.901868 ACACGTGGTGGTAATGTATCTTT 58.098 39.130 21.57 0.00 37.94 2.52
1916 3206 7.276218 TGTGAAAAATCTGAAAGCTGTTTTGAG 59.724 33.333 0.00 0.00 32.03 3.02
1996 3292 6.783708 AGTTTTGGTTTGGTTCAGTGATAA 57.216 33.333 0.00 0.00 0.00 1.75
2012 3310 5.998363 ACTTACTCCTTTCTGCTAGTTTTGG 59.002 40.000 0.00 0.00 0.00 3.28
2057 3355 0.440371 GAGCTTGAAACGCGAGAAGG 59.560 55.000 15.93 0.00 0.00 3.46
2076 3374 5.238583 AGTTCATAGAAAAGGTTGTCTCCG 58.761 41.667 0.00 0.00 0.00 4.63
2230 3543 4.750098 ACACGGAATCTTTAAGTGTCACAG 59.250 41.667 5.62 0.00 41.55 3.66
2321 3634 4.377021 TGCTGTTACCACTAAACTGAGTG 58.623 43.478 0.00 0.00 45.43 3.51
2332 3646 3.747099 CAGTTATGCTGCTGTTACCAC 57.253 47.619 0.00 0.00 38.52 4.16
2417 3731 7.765695 ATATGGTCCTAATGTATGGCAAAAG 57.234 36.000 0.00 0.00 0.00 2.27
2418 3732 9.461312 GATATATGGTCCTAATGTATGGCAAAA 57.539 33.333 0.00 0.00 0.00 2.44
2535 3874 6.989169 ACAATCTAGATGCCTTAACATGACTC 59.011 38.462 5.86 0.00 0.00 3.36
2541 3880 9.944376 GGATATTACAATCTAGATGCCTTAACA 57.056 33.333 5.86 0.00 0.00 2.41
2580 3919 2.039418 AGCCAGTCGCAGGATACAATA 58.961 47.619 0.00 0.00 41.38 1.90
2651 4036 5.555966 AGTTGGTTGGACAAAAACATTGTT 58.444 33.333 11.90 0.00 31.96 2.83
2754 4140 5.316167 AGAAATGCACACCTGAATGTAAGA 58.684 37.500 0.00 0.00 0.00 2.10
2857 4243 3.518303 ACTGTATTCCCAACTACCCAGAC 59.482 47.826 0.00 0.00 0.00 3.51
2973 4360 8.774546 TGTCTGAGACTTCTATGGATCTTATT 57.225 34.615 14.42 0.00 33.15 1.40
3038 4425 6.712547 GCTTCCTAAAGGTGCTCATAATACAT 59.287 38.462 8.68 0.00 36.34 2.29
3101 4488 5.769662 CCATTATGCCCTGTGCTTCTATAAA 59.230 40.000 0.00 0.00 42.00 1.40
3103 4490 4.807303 GCCATTATGCCCTGTGCTTCTATA 60.807 45.833 0.00 0.00 42.00 1.31
3231 4780 3.504134 CACCACACCACGATATTTTTCCA 59.496 43.478 0.00 0.00 0.00 3.53
3243 4792 2.118404 CCACACCACACCACACCAC 61.118 63.158 0.00 0.00 0.00 4.16
3322 4885 1.742831 TGAAACAGTGTTCTGGCACAC 59.257 47.619 9.40 0.00 46.48 3.82
3324 4887 2.163412 TGTTGAAACAGTGTTCTGGCAC 59.837 45.455 9.40 3.28 45.14 5.01
3351 4932 9.401058 TCTTGGAATCTTTTTATCCTGAGATTC 57.599 33.333 13.70 13.70 46.98 2.52
3358 4939 9.413734 CTATGGTTCTTGGAATCTTTTTATCCT 57.586 33.333 0.00 0.00 34.24 3.24
3368 4949 4.843728 TGTCCACTATGGTTCTTGGAATC 58.156 43.478 0.00 0.00 39.86 2.52
3389 4970 3.503363 TGGCAGCTTGAAAATGAGTACTG 59.497 43.478 0.00 0.00 0.00 2.74
3539 5450 9.645128 AAATCCATCCTGTTTACAATATGATGA 57.355 29.630 0.00 1.99 31.98 2.92
3747 5945 3.500982 CAGCCAAAAATACATGTCCACG 58.499 45.455 0.00 0.00 0.00 4.94
3757 5955 4.279982 TCTGATCCATGCAGCCAAAAATA 58.720 39.130 0.00 0.00 33.45 1.40
3768 5967 4.706035 AGAAGTCTCATTCTGATCCATGC 58.294 43.478 0.00 0.00 38.12 4.06
3792 5992 7.925483 TGTTTCAGTTATTTTTGATCCACTTGG 59.075 33.333 0.00 0.00 0.00 3.61
3808 6056 6.866770 CGTAGAAATCTGGTCTGTTTCAGTTA 59.133 38.462 0.00 0.00 35.00 2.24
3832 6080 2.353579 GGGGTAATTCGTGTGATTTCCG 59.646 50.000 0.00 0.00 0.00 4.30
3862 6110 2.234143 TGATTTGACCCGAATTGCACA 58.766 42.857 0.00 0.00 0.00 4.57
3903 6151 1.202568 TGGCGATCCATGAGATGTGTC 60.203 52.381 0.00 0.00 37.47 3.67
3958 6209 2.202756 GGTAACGCCCGCTCTCTG 60.203 66.667 0.00 0.00 0.00 3.35
3965 6216 1.808390 GCAGTACAGGTAACGCCCG 60.808 63.158 0.00 0.00 46.39 6.13
3969 6220 1.202154 CCTCGAGCAGTACAGGTAACG 60.202 57.143 6.99 0.00 46.39 3.18
3970 6221 2.089980 TCCTCGAGCAGTACAGGTAAC 58.910 52.381 6.99 0.00 0.00 2.50
3971 6222 2.502142 TCCTCGAGCAGTACAGGTAA 57.498 50.000 6.99 0.00 0.00 2.85
4235 6488 0.884704 ATCTCTCTCTCGCTCGCTCC 60.885 60.000 0.00 0.00 0.00 4.70
4285 6546 2.812619 CGAGCCCTCCCATTCTCCC 61.813 68.421 0.00 0.00 0.00 4.30
4464 6727 1.533731 GGTTTTGGTTTCGCGATCAGA 59.466 47.619 10.88 1.48 0.00 3.27
4497 6760 2.026301 GCCCCGAAGACGATCTCG 59.974 66.667 0.00 0.00 46.33 4.04
4552 6836 4.131088 GTCGTGGCCTCCGAGGAC 62.131 72.222 19.33 16.79 46.38 3.85
4617 6930 0.817634 ACCCCACACACATTGACACG 60.818 55.000 0.00 0.00 0.00 4.49
4673 6986 1.614241 ATTTCCTCCCAGTCCGTCCG 61.614 60.000 0.00 0.00 0.00 4.79
4674 6987 0.107654 CATTTCCTCCCAGTCCGTCC 60.108 60.000 0.00 0.00 0.00 4.79
4675 6988 0.613777 ACATTTCCTCCCAGTCCGTC 59.386 55.000 0.00 0.00 0.00 4.79
4676 6989 1.831736 CTACATTTCCTCCCAGTCCGT 59.168 52.381 0.00 0.00 0.00 4.69
4752 7065 6.957631 TGATTACAGTCATGGTGTATTTCCT 58.042 36.000 8.97 0.00 30.54 3.36
4753 7066 7.624360 TTGATTACAGTCATGGTGTATTTCC 57.376 36.000 8.97 0.00 30.54 3.13
4754 7067 8.131100 CCATTGATTACAGTCATGGTGTATTTC 58.869 37.037 8.97 9.53 30.54 2.17
4755 7068 7.833682 TCCATTGATTACAGTCATGGTGTATTT 59.166 33.333 8.97 2.36 32.92 1.40
4764 7077 5.734720 ACTCGTTCCATTGATTACAGTCAT 58.265 37.500 0.00 0.00 0.00 3.06
4775 7088 6.727824 AATCAGTCTTTACTCGTTCCATTG 57.272 37.500 0.00 0.00 31.97 2.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.