Multiple sequence alignment - TraesCS3A01G110300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G110300 chr3A 100.000 7589 0 0 1 7589 77482266 77489854 0.000000e+00 14015.0
1 TraesCS3A01G110300 chr2D 98.549 3307 48 0 2093 5399 106329395 106332701 0.000000e+00 5842.0
2 TraesCS3A01G110300 chr2D 98.160 3315 57 3 2093 5407 463076519 463079829 0.000000e+00 5781.0
3 TraesCS3A01G110300 chr2D 91.002 489 41 3 6834 7322 411746577 411747062 0.000000e+00 656.0
4 TraesCS3A01G110300 chr2D 94.286 35 2 0 947 981 318416608 318416574 4.000000e-03 54.7
5 TraesCS3A01G110300 chr7A 98.396 3304 48 3 2099 5399 109348659 109351960 0.000000e+00 5803.0
6 TraesCS3A01G110300 chr7A 98.276 3306 52 3 2099 5404 438511593 438514893 0.000000e+00 5784.0
7 TraesCS3A01G110300 chr7A 98.330 3294 51 2 2104 5394 232387313 232384021 0.000000e+00 5775.0
8 TraesCS3A01G110300 chr1D 98.011 3318 61 3 2093 5407 247482128 247478813 0.000000e+00 5757.0
9 TraesCS3A01G110300 chr1D 93.562 233 15 0 7357 7589 311724021 311724253 1.570000e-91 348.0
10 TraesCS3A01G110300 chr5A 97.979 3316 66 1 2093 5408 174598282 174601596 0.000000e+00 5751.0
11 TraesCS3A01G110300 chr5A 98.378 555 9 0 92 646 606546197 606545643 0.000000e+00 976.0
12 TraesCS3A01G110300 chr2B 98.036 3310 63 1 2098 5405 46600273 46596964 0.000000e+00 5751.0
13 TraesCS3A01G110300 chr2B 98.704 540 7 0 107 646 141155955 141155416 0.000000e+00 959.0
14 TraesCS3A01G110300 chr2B 93.896 557 27 4 92 646 698003516 698002965 0.000000e+00 833.0
15 TraesCS3A01G110300 chr2B 89.809 471 45 2 6842 7312 161691900 161692367 1.090000e-167 601.0
16 TraesCS3A01G110300 chr2B 94.022 368 20 2 301 666 76907408 76907775 2.390000e-154 556.0
17 TraesCS3A01G110300 chr2B 87.324 213 24 3 770 980 602230963 602231174 2.740000e-59 241.0
18 TraesCS3A01G110300 chr4D 98.009 3315 58 4 2088 5398 83143555 83146865 0.000000e+00 5749.0
19 TraesCS3A01G110300 chr4D 92.067 479 35 3 6842 7319 490098470 490098946 0.000000e+00 671.0
20 TraesCS3A01G110300 chr4D 91.684 481 39 1 6842 7322 380344056 380343577 0.000000e+00 665.0
21 TraesCS3A01G110300 chr3D 94.086 1116 55 4 978 2092 66404357 66405462 0.000000e+00 1685.0
22 TraesCS3A01G110300 chr3D 95.624 937 30 4 5691 6624 66405761 66406689 0.000000e+00 1493.0
23 TraesCS3A01G110300 chr3D 93.305 478 31 1 6845 7322 480959968 480960444 0.000000e+00 704.0
24 TraesCS3A01G110300 chr3D 91.546 485 41 0 6838 7322 54458702 54459186 0.000000e+00 669.0
25 TraesCS3A01G110300 chr3D 91.268 481 41 1 6842 7322 439834875 439835354 0.000000e+00 654.0
26 TraesCS3A01G110300 chr3D 93.197 294 18 2 5406 5697 66405444 66405737 1.510000e-116 431.0
27 TraesCS3A01G110300 chr3D 97.778 225 5 0 6619 6843 66406771 66406995 9.230000e-104 388.0
28 TraesCS3A01G110300 chr3D 92.704 233 16 1 7357 7589 393555222 393555453 1.220000e-87 335.0
29 TraesCS3A01G110300 chr3B 97.760 759 16 1 978 1736 110227687 110228444 0.000000e+00 1306.0
30 TraesCS3A01G110300 chr3B 96.730 581 19 0 6057 6637 110229555 110230135 0.000000e+00 968.0
31 TraesCS3A01G110300 chr3B 86.245 538 44 18 5542 6061 110228832 110229357 2.390000e-154 556.0
32 TraesCS3A01G110300 chr3B 86.957 276 32 4 1818 2092 110228441 110228713 2.660000e-79 307.0
33 TraesCS3A01G110300 chr3B 91.866 209 13 3 6635 6843 110230546 110230750 9.630000e-74 289.0
34 TraesCS3A01G110300 chr4A 95.315 555 26 0 92 646 628007797 628008351 0.000000e+00 881.0
35 TraesCS3A01G110300 chr4A 93.562 233 15 0 7357 7589 589796323 589796555 1.570000e-91 348.0
36 TraesCS3A01G110300 chr4A 82.775 209 33 3 772 978 493575124 493575331 4.680000e-42 183.0
37 TraesCS3A01G110300 chr7B 94.424 556 28 3 91 646 728935194 728934642 0.000000e+00 852.0
38 TraesCS3A01G110300 chr1B 92.613 555 38 3 96 650 67502828 67502277 0.000000e+00 795.0
39 TraesCS3A01G110300 chr1B 82.609 115 18 2 7199 7312 330387878 330387765 4.850000e-17 100.0
40 TraesCS3A01G110300 chr6B 91.562 557 42 4 91 647 291256508 291257059 0.000000e+00 763.0
41 TraesCS3A01G110300 chr6B 92.784 388 25 3 92 479 257599028 257598644 6.650000e-155 558.0
42 TraesCS3A01G110300 chr6B 83.568 213 32 3 770 980 505910646 505910435 6.010000e-46 196.0
43 TraesCS3A01G110300 chr6B 83.732 209 30 3 770 975 540588646 540588853 2.160000e-45 195.0
44 TraesCS3A01G110300 chr6B 100.000 29 0 0 7315 7343 512444191 512444219 4.000000e-03 54.7
45 TraesCS3A01G110300 chr7D 92.276 479 37 0 6844 7322 568513961 568514439 0.000000e+00 680.0
46 TraesCS3A01G110300 chr7D 91.511 483 37 3 6843 7322 264984447 264983966 0.000000e+00 662.0
47 TraesCS3A01G110300 chr7D 95.279 233 11 0 7357 7589 199908924 199908692 3.340000e-98 370.0
48 TraesCS3A01G110300 chr7D 94.421 233 13 0 7357 7589 219703470 219703702 7.240000e-95 359.0
49 TraesCS3A01G110300 chr7D 93.133 233 15 1 7357 7589 186524469 186524238 2.620000e-89 340.0
50 TraesCS3A01G110300 chr5D 89.615 520 49 3 6844 7358 345999452 345999971 0.000000e+00 656.0
51 TraesCS3A01G110300 chr5D 92.704 233 17 0 7357 7589 535148424 535148656 3.390000e-88 337.0
52 TraesCS3A01G110300 chr5D 92.704 233 16 1 7357 7589 367767881 367767650 1.220000e-87 335.0
53 TraesCS3A01G110300 chrUn 91.787 414 28 4 234 643 117082084 117082495 8.540000e-159 571.0
54 TraesCS3A01G110300 chrUn 86.864 472 48 6 6842 7312 20490915 20490457 4.060000e-142 516.0
55 TraesCS3A01G110300 chr1A 85.882 340 39 7 646 981 431950845 431950511 3.370000e-93 353.0
56 TraesCS3A01G110300 chr6D 93.562 233 14 1 7357 7589 392573265 392573496 5.640000e-91 346.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G110300 chr3A 77482266 77489854 7588 False 14015.00 14015 100.00000 1 7589 1 chr3A.!!$F1 7588
1 TraesCS3A01G110300 chr2D 106329395 106332701 3306 False 5842.00 5842 98.54900 2093 5399 1 chr2D.!!$F1 3306
2 TraesCS3A01G110300 chr2D 463076519 463079829 3310 False 5781.00 5781 98.16000 2093 5407 1 chr2D.!!$F3 3314
3 TraesCS3A01G110300 chr7A 109348659 109351960 3301 False 5803.00 5803 98.39600 2099 5399 1 chr7A.!!$F1 3300
4 TraesCS3A01G110300 chr7A 438511593 438514893 3300 False 5784.00 5784 98.27600 2099 5404 1 chr7A.!!$F2 3305
5 TraesCS3A01G110300 chr7A 232384021 232387313 3292 True 5775.00 5775 98.33000 2104 5394 1 chr7A.!!$R1 3290
6 TraesCS3A01G110300 chr1D 247478813 247482128 3315 True 5757.00 5757 98.01100 2093 5407 1 chr1D.!!$R1 3314
7 TraesCS3A01G110300 chr5A 174598282 174601596 3314 False 5751.00 5751 97.97900 2093 5408 1 chr5A.!!$F1 3315
8 TraesCS3A01G110300 chr5A 606545643 606546197 554 True 976.00 976 98.37800 92 646 1 chr5A.!!$R1 554
9 TraesCS3A01G110300 chr2B 46596964 46600273 3309 True 5751.00 5751 98.03600 2098 5405 1 chr2B.!!$R1 3307
10 TraesCS3A01G110300 chr2B 141155416 141155955 539 True 959.00 959 98.70400 107 646 1 chr2B.!!$R2 539
11 TraesCS3A01G110300 chr2B 698002965 698003516 551 True 833.00 833 93.89600 92 646 1 chr2B.!!$R3 554
12 TraesCS3A01G110300 chr4D 83143555 83146865 3310 False 5749.00 5749 98.00900 2088 5398 1 chr4D.!!$F1 3310
13 TraesCS3A01G110300 chr3D 66404357 66406995 2638 False 999.25 1685 95.17125 978 6843 4 chr3D.!!$F5 5865
14 TraesCS3A01G110300 chr3B 110227687 110230750 3063 False 685.20 1306 91.91160 978 6843 5 chr3B.!!$F1 5865
15 TraesCS3A01G110300 chr4A 628007797 628008351 554 False 881.00 881 95.31500 92 646 1 chr4A.!!$F3 554
16 TraesCS3A01G110300 chr7B 728934642 728935194 552 True 852.00 852 94.42400 91 646 1 chr7B.!!$R1 555
17 TraesCS3A01G110300 chr1B 67502277 67502828 551 True 795.00 795 92.61300 96 650 1 chr1B.!!$R1 554
18 TraesCS3A01G110300 chr6B 291256508 291257059 551 False 763.00 763 91.56200 91 647 1 chr6B.!!$F1 556
19 TraesCS3A01G110300 chr5D 345999452 345999971 519 False 656.00 656 89.61500 6844 7358 1 chr5D.!!$F1 514

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
862 863 0.041663 AATGCGTCCGTTTGTCGTTG 60.042 50.000 0.00 0.0 37.94 4.10 F
880 881 0.114364 TGGGCTCACTGACTGACCTA 59.886 55.000 0.00 0.0 0.00 3.08 F
959 960 0.811915 AATCGAGTCTGTCTGGGTCG 59.188 55.000 0.00 0.0 0.00 4.79 F
960 961 1.032657 ATCGAGTCTGTCTGGGTCGG 61.033 60.000 0.00 0.0 0.00 4.79 F
2025 2027 1.200948 GTGAGCAAAGAGGCATTGACC 59.799 52.381 2.44 0.0 35.83 4.02 F
2515 2518 1.379977 TAGGGTCTCTGACAGGGCG 60.380 63.158 1.81 0.0 33.68 6.13 F
3623 3626 0.392595 GGTTAGGCACGAAGGAAGGG 60.393 60.000 0.00 0.0 0.00 3.95 F
3942 4064 2.597455 CCATTGAGGTGTGGAAAGGTT 58.403 47.619 0.00 0.0 37.72 3.50 F
5078 5207 1.005450 GGGGTAGCACCAATTGAGGAA 59.995 52.381 7.12 0.0 41.02 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2519 2522 0.531532 CTGCATCAACTAGCTCCCGG 60.532 60.000 0.00 0.0 0.00 5.73 R
2568 2571 4.044571 TCCTCTCCATTTGGTTTCTTGGAT 59.955 41.667 0.00 0.0 37.61 3.41 R
2926 2929 1.616091 CCCATGCGCCCCTTCAAAAT 61.616 55.000 4.18 0.0 0.00 1.82 R
3106 3109 2.099921 GCACGCCTATCTTCTCTTCTCA 59.900 50.000 0.00 0.0 0.00 3.27 R
3403 3406 1.573108 ATCTTCGCTTCTCCTTCCCA 58.427 50.000 0.00 0.0 0.00 4.37 R
4310 4433 0.322456 CCCACCACATGACATTCCGT 60.322 55.000 0.00 0.0 0.00 4.69 R
5045 5174 0.680061 CTACCCCAACCCTATCTCGC 59.320 60.000 0.00 0.0 0.00 5.03 R
5123 5252 0.689080 CTGGAGCTTCTGGAGGCCTA 60.689 60.000 4.42 0.0 33.44 3.93 R
7088 7978 0.393077 AACGGTGACAGAAGAGTGGG 59.607 55.000 0.00 0.0 0.00 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.554692 CCGCTCGCGTGTTGGATC 61.555 66.667 5.77 0.00 37.81 3.36
23 24 3.902063 CGCTCGCGTGTTGGATCG 61.902 66.667 5.77 0.00 34.35 3.69
24 25 3.554692 GCTCGCGTGTTGGATCGG 61.555 66.667 5.77 0.00 0.00 4.18
25 26 2.126071 CTCGCGTGTTGGATCGGT 60.126 61.111 5.77 0.00 0.00 4.69
26 27 2.431771 TCGCGTGTTGGATCGGTG 60.432 61.111 5.77 0.00 0.00 4.94
27 28 3.487202 CGCGTGTTGGATCGGTGG 61.487 66.667 0.00 0.00 0.00 4.61
28 29 2.047655 GCGTGTTGGATCGGTGGA 60.048 61.111 0.00 0.00 0.00 4.02
29 30 2.100631 GCGTGTTGGATCGGTGGAG 61.101 63.158 0.00 0.00 0.00 3.86
30 31 2.100631 CGTGTTGGATCGGTGGAGC 61.101 63.158 0.00 0.00 0.00 4.70
31 32 1.296715 GTGTTGGATCGGTGGAGCT 59.703 57.895 0.00 0.00 0.00 4.09
32 33 0.741221 GTGTTGGATCGGTGGAGCTC 60.741 60.000 4.71 4.71 0.00 4.09
33 34 1.519455 GTTGGATCGGTGGAGCTCG 60.519 63.158 7.83 0.00 0.00 5.03
34 35 3.371097 TTGGATCGGTGGAGCTCGC 62.371 63.158 7.83 2.84 0.00 5.03
35 36 3.838271 GGATCGGTGGAGCTCGCA 61.838 66.667 7.83 4.12 0.00 5.10
36 37 2.583593 GATCGGTGGAGCTCGCAC 60.584 66.667 20.72 20.72 0.00 5.34
37 38 4.498520 ATCGGTGGAGCTCGCACG 62.499 66.667 21.52 18.09 0.00 5.34
54 55 4.664677 GCCCGGTCGCGCTATGAT 62.665 66.667 5.56 0.00 0.00 2.45
55 56 2.430921 CCCGGTCGCGCTATGATC 60.431 66.667 5.56 0.00 0.00 2.92
56 57 2.801162 CCGGTCGCGCTATGATCG 60.801 66.667 5.56 7.73 39.61 3.69
65 66 2.070262 CGCTATGATCGCTTCATCCA 57.930 50.000 4.24 0.00 44.13 3.41
66 67 1.723542 CGCTATGATCGCTTCATCCAC 59.276 52.381 4.24 0.00 44.13 4.02
67 68 2.072298 GCTATGATCGCTTCATCCACC 58.928 52.381 4.24 0.00 44.13 4.61
68 69 2.289320 GCTATGATCGCTTCATCCACCT 60.289 50.000 4.24 0.00 44.13 4.00
69 70 2.251409 ATGATCGCTTCATCCACCTG 57.749 50.000 0.00 0.00 41.36 4.00
70 71 0.462581 TGATCGCTTCATCCACCTGC 60.463 55.000 0.00 0.00 0.00 4.85
71 72 1.153086 ATCGCTTCATCCACCTGCC 60.153 57.895 0.00 0.00 0.00 4.85
72 73 1.913951 ATCGCTTCATCCACCTGCCA 61.914 55.000 0.00 0.00 0.00 4.92
73 74 1.452651 CGCTTCATCCACCTGCCAT 60.453 57.895 0.00 0.00 0.00 4.40
74 75 1.721664 CGCTTCATCCACCTGCCATG 61.722 60.000 0.00 0.00 0.00 3.66
75 76 2.012902 GCTTCATCCACCTGCCATGC 62.013 60.000 0.00 0.00 0.00 4.06
76 77 1.721664 CTTCATCCACCTGCCATGCG 61.722 60.000 0.00 0.00 0.00 4.73
77 78 2.438975 CATCCACCTGCCATGCGT 60.439 61.111 0.00 0.00 0.00 5.24
78 79 2.438975 ATCCACCTGCCATGCGTG 60.439 61.111 0.00 0.00 0.00 5.34
79 80 3.272364 ATCCACCTGCCATGCGTGT 62.272 57.895 4.96 0.00 0.00 4.49
80 81 3.434319 CCACCTGCCATGCGTGTC 61.434 66.667 4.96 0.00 0.00 3.67
81 82 3.792047 CACCTGCCATGCGTGTCG 61.792 66.667 4.96 0.00 0.00 4.35
479 480 4.935808 ACCTTTTGCTTACTCGATCGATTT 59.064 37.500 19.78 11.31 0.00 2.17
506 507 2.559840 GACTGTCGAGTCGCCGAA 59.440 61.111 7.92 0.00 39.44 4.30
520 521 0.527817 GCCGAACCTGAATCGACGAT 60.528 55.000 4.05 4.05 42.76 3.73
526 527 1.360551 CTGAATCGACGATCCGGCT 59.639 57.895 11.42 0.00 29.68 5.52
552 553 0.530650 ACGCTGAATCCGCATCGAAT 60.531 50.000 0.00 0.00 32.33 3.34
569 570 2.034305 CGAATCTTACCGAATCGACCCT 59.966 50.000 3.36 0.00 45.59 4.34
608 609 0.388649 GGGTCGATGAATCCGGATCG 60.389 60.000 19.43 18.10 42.29 3.69
653 654 2.741747 GGCTACTATGCCCCGTCC 59.258 66.667 0.00 0.00 46.82 4.79
654 655 1.837499 GGCTACTATGCCCCGTCCT 60.837 63.158 0.00 0.00 46.82 3.85
655 656 1.367840 GCTACTATGCCCCGTCCTG 59.632 63.158 0.00 0.00 0.00 3.86
656 657 1.367840 CTACTATGCCCCGTCCTGC 59.632 63.158 0.00 0.00 0.00 4.85
657 658 2.100879 CTACTATGCCCCGTCCTGCC 62.101 65.000 0.00 0.00 0.00 4.85
658 659 4.609018 CTATGCCCCGTCCTGCCG 62.609 72.222 0.00 0.00 0.00 5.69
675 676 4.408821 GAGCCGCCATGGACACCA 62.409 66.667 18.40 0.00 42.00 4.17
676 677 4.722700 AGCCGCCATGGACACCAC 62.723 66.667 18.40 0.00 42.00 4.16
681 682 4.386951 CCATGGACACCACGCCGA 62.387 66.667 5.56 0.00 35.80 5.54
682 683 2.358125 CATGGACACCACGCCGAA 60.358 61.111 0.00 0.00 35.80 4.30
683 684 2.358247 ATGGACACCACGCCGAAC 60.358 61.111 0.00 0.00 35.80 3.95
684 685 3.894547 ATGGACACCACGCCGAACC 62.895 63.158 0.00 0.00 35.80 3.62
694 695 4.481112 GCCGAACCGCCATGCTTG 62.481 66.667 0.00 0.00 0.00 4.01
695 696 4.481112 CCGAACCGCCATGCTTGC 62.481 66.667 0.00 0.00 0.00 4.01
696 697 4.481112 CGAACCGCCATGCTTGCC 62.481 66.667 0.00 0.00 0.00 4.52
697 698 4.481112 GAACCGCCATGCTTGCCG 62.481 66.667 0.00 0.00 0.00 5.69
702 703 4.487412 GCCATGCTTGCCGTGCTC 62.487 66.667 0.00 0.00 0.00 4.26
703 704 4.170062 CCATGCTTGCCGTGCTCG 62.170 66.667 0.14 0.14 0.00 5.03
704 705 4.824166 CATGCTTGCCGTGCTCGC 62.824 66.667 1.89 0.00 35.54 5.03
708 709 3.485431 CTTGCCGTGCTCGCTGAG 61.485 66.667 1.89 1.80 35.54 3.35
730 731 4.443266 GCTCGCCTTGCCTCGTCT 62.443 66.667 0.00 0.00 0.00 4.18
731 732 2.202676 CTCGCCTTGCCTCGTCTC 60.203 66.667 0.00 0.00 0.00 3.36
732 733 4.116328 TCGCCTTGCCTCGTCTCG 62.116 66.667 0.00 0.00 0.00 4.04
777 778 3.805307 CGTCTCCTCGCAGCTCGT 61.805 66.667 5.66 0.00 39.67 4.18
778 779 2.101380 GTCTCCTCGCAGCTCGTC 59.899 66.667 5.66 0.00 39.67 4.20
779 780 3.134792 TCTCCTCGCAGCTCGTCC 61.135 66.667 5.66 0.00 39.67 4.79
780 781 3.137459 CTCCTCGCAGCTCGTCCT 61.137 66.667 5.66 0.00 39.67 3.85
781 782 3.408501 CTCCTCGCAGCTCGTCCTG 62.409 68.421 5.66 1.57 39.67 3.86
782 783 3.443925 CCTCGCAGCTCGTCCTGA 61.444 66.667 8.82 0.00 39.67 3.86
783 784 2.202544 CTCGCAGCTCGTCCTGAC 60.203 66.667 8.82 0.00 39.67 3.51
809 810 3.634072 GCGTCGCTGCCTGCTATG 61.634 66.667 10.68 0.00 40.11 2.23
810 811 2.202797 CGTCGCTGCCTGCTATGT 60.203 61.111 0.00 0.00 40.11 2.29
811 812 2.520039 CGTCGCTGCCTGCTATGTG 61.520 63.158 0.00 0.00 40.11 3.21
812 813 1.448540 GTCGCTGCCTGCTATGTGT 60.449 57.895 0.00 0.00 40.11 3.72
813 814 1.021390 GTCGCTGCCTGCTATGTGTT 61.021 55.000 0.00 0.00 40.11 3.32
814 815 0.740868 TCGCTGCCTGCTATGTGTTC 60.741 55.000 0.00 0.00 40.11 3.18
815 816 1.717937 GCTGCCTGCTATGTGTTCG 59.282 57.895 0.00 0.00 38.95 3.95
816 817 0.740868 GCTGCCTGCTATGTGTTCGA 60.741 55.000 0.00 0.00 38.95 3.71
817 818 1.002366 CTGCCTGCTATGTGTTCGAC 58.998 55.000 0.00 0.00 0.00 4.20
818 819 0.320050 TGCCTGCTATGTGTTCGACA 59.680 50.000 0.00 0.00 39.53 4.35
819 820 1.270571 TGCCTGCTATGTGTTCGACAA 60.271 47.619 0.00 0.00 38.36 3.18
820 821 1.804151 GCCTGCTATGTGTTCGACAAA 59.196 47.619 0.00 0.00 38.36 2.83
821 822 2.225491 GCCTGCTATGTGTTCGACAAAA 59.775 45.455 0.00 0.00 38.36 2.44
822 823 3.119849 GCCTGCTATGTGTTCGACAAAAT 60.120 43.478 0.00 0.00 38.36 1.82
823 824 4.406069 CCTGCTATGTGTTCGACAAAATG 58.594 43.478 0.00 0.00 38.36 2.32
824 825 3.820689 TGCTATGTGTTCGACAAAATGC 58.179 40.909 0.00 0.00 38.36 3.56
825 826 3.501828 TGCTATGTGTTCGACAAAATGCT 59.498 39.130 0.00 0.00 38.36 3.79
826 827 4.693095 TGCTATGTGTTCGACAAAATGCTA 59.307 37.500 0.00 0.00 38.36 3.49
827 828 5.163864 TGCTATGTGTTCGACAAAATGCTAG 60.164 40.000 0.00 0.00 38.36 3.42
828 829 4.685169 ATGTGTTCGACAAAATGCTAGG 57.315 40.909 0.00 0.00 38.36 3.02
829 830 3.734463 TGTGTTCGACAAAATGCTAGGA 58.266 40.909 0.00 0.00 0.00 2.94
830 831 3.496884 TGTGTTCGACAAAATGCTAGGAC 59.503 43.478 0.00 0.00 0.00 3.85
831 832 2.734606 TGTTCGACAAAATGCTAGGACG 59.265 45.455 0.00 0.00 0.00 4.79
832 833 2.004583 TCGACAAAATGCTAGGACGG 57.995 50.000 0.00 0.00 0.00 4.79
833 834 1.546923 TCGACAAAATGCTAGGACGGA 59.453 47.619 0.00 0.00 0.00 4.69
834 835 1.659098 CGACAAAATGCTAGGACGGAC 59.341 52.381 0.00 0.00 0.00 4.79
835 836 2.695359 GACAAAATGCTAGGACGGACA 58.305 47.619 0.00 0.00 0.00 4.02
836 837 3.270877 GACAAAATGCTAGGACGGACAT 58.729 45.455 0.00 0.00 0.00 3.06
837 838 3.009723 ACAAAATGCTAGGACGGACATG 58.990 45.455 0.00 0.00 0.00 3.21
838 839 1.668419 AAATGCTAGGACGGACATGC 58.332 50.000 0.00 0.00 0.00 4.06
839 840 0.541392 AATGCTAGGACGGACATGCA 59.459 50.000 0.00 0.00 34.88 3.96
840 841 0.179073 ATGCTAGGACGGACATGCAC 60.179 55.000 0.00 0.00 33.16 4.57
841 842 1.218047 GCTAGGACGGACATGCACA 59.782 57.895 0.00 0.00 0.00 4.57
842 843 0.391130 GCTAGGACGGACATGCACAA 60.391 55.000 0.00 0.00 0.00 3.33
843 844 1.943968 GCTAGGACGGACATGCACAAA 60.944 52.381 0.00 0.00 0.00 2.83
844 845 2.422597 CTAGGACGGACATGCACAAAA 58.577 47.619 0.00 0.00 0.00 2.44
845 846 1.909700 AGGACGGACATGCACAAAAT 58.090 45.000 0.00 0.00 0.00 1.82
846 847 1.541147 AGGACGGACATGCACAAAATG 59.459 47.619 0.00 0.00 0.00 2.32
854 855 4.626225 GCACAAAATGCGTCCGTT 57.374 50.000 0.00 0.00 46.55 4.44
855 856 2.880091 GCACAAAATGCGTCCGTTT 58.120 47.368 0.00 0.00 46.55 3.60
856 857 0.502275 GCACAAAATGCGTCCGTTTG 59.498 50.000 0.94 0.94 46.55 2.93
857 858 1.833860 CACAAAATGCGTCCGTTTGT 58.166 45.000 2.08 2.08 30.83 2.83
858 859 1.778591 CACAAAATGCGTCCGTTTGTC 59.221 47.619 4.57 0.00 30.83 3.18
859 860 1.041726 CAAAATGCGTCCGTTTGTCG 58.958 50.000 0.00 0.00 39.52 4.35
860 861 0.658897 AAAATGCGTCCGTTTGTCGT 59.341 45.000 0.00 0.00 37.94 4.34
861 862 0.658897 AAATGCGTCCGTTTGTCGTT 59.341 45.000 0.00 0.00 37.94 3.85
862 863 0.041663 AATGCGTCCGTTTGTCGTTG 60.042 50.000 0.00 0.00 37.94 4.10
863 864 1.837538 ATGCGTCCGTTTGTCGTTGG 61.838 55.000 0.00 0.00 37.94 3.77
864 865 2.932905 CGTCCGTTTGTCGTTGGG 59.067 61.111 0.00 0.00 37.94 4.12
865 866 2.635338 GTCCGTTTGTCGTTGGGC 59.365 61.111 0.00 0.00 37.94 5.36
866 867 1.890510 GTCCGTTTGTCGTTGGGCT 60.891 57.895 0.00 0.00 37.94 5.19
867 868 1.595929 TCCGTTTGTCGTTGGGCTC 60.596 57.895 0.00 0.00 37.94 4.70
868 869 1.890041 CCGTTTGTCGTTGGGCTCA 60.890 57.895 0.00 0.00 37.94 4.26
869 870 1.278637 CGTTTGTCGTTGGGCTCAC 59.721 57.895 0.00 0.00 34.52 3.51
870 871 1.157870 CGTTTGTCGTTGGGCTCACT 61.158 55.000 0.00 0.00 34.52 3.41
871 872 0.307760 GTTTGTCGTTGGGCTCACTG 59.692 55.000 0.00 0.00 0.00 3.66
872 873 0.179234 TTTGTCGTTGGGCTCACTGA 59.821 50.000 0.00 0.00 0.00 3.41
873 874 0.531974 TTGTCGTTGGGCTCACTGAC 60.532 55.000 9.88 9.88 0.00 3.51
874 875 1.367840 GTCGTTGGGCTCACTGACT 59.632 57.895 9.60 0.00 0.00 3.41
875 876 0.946221 GTCGTTGGGCTCACTGACTG 60.946 60.000 9.60 0.00 0.00 3.51
876 877 1.112916 TCGTTGGGCTCACTGACTGA 61.113 55.000 0.00 0.00 0.00 3.41
877 878 0.946221 CGTTGGGCTCACTGACTGAC 60.946 60.000 0.00 0.00 0.00 3.51
878 879 0.603975 GTTGGGCTCACTGACTGACC 60.604 60.000 0.00 0.00 0.00 4.02
879 880 0.764369 TTGGGCTCACTGACTGACCT 60.764 55.000 0.00 0.00 0.00 3.85
880 881 0.114364 TGGGCTCACTGACTGACCTA 59.886 55.000 0.00 0.00 0.00 3.08
881 882 1.267121 GGGCTCACTGACTGACCTAA 58.733 55.000 0.00 0.00 0.00 2.69
882 883 1.834263 GGGCTCACTGACTGACCTAAT 59.166 52.381 0.00 0.00 0.00 1.73
883 884 2.237392 GGGCTCACTGACTGACCTAATT 59.763 50.000 0.00 0.00 0.00 1.40
884 885 3.451178 GGGCTCACTGACTGACCTAATTA 59.549 47.826 0.00 0.00 0.00 1.40
885 886 4.081087 GGGCTCACTGACTGACCTAATTAA 60.081 45.833 0.00 0.00 0.00 1.40
886 887 5.488341 GGCTCACTGACTGACCTAATTAAA 58.512 41.667 0.00 0.00 0.00 1.52
887 888 5.938125 GGCTCACTGACTGACCTAATTAAAA 59.062 40.000 0.00 0.00 0.00 1.52
888 889 6.430000 GGCTCACTGACTGACCTAATTAAAAA 59.570 38.462 0.00 0.00 0.00 1.94
889 890 7.361286 GGCTCACTGACTGACCTAATTAAAAAG 60.361 40.741 0.00 0.00 0.00 2.27
890 891 7.435068 TCACTGACTGACCTAATTAAAAAGC 57.565 36.000 0.00 0.00 0.00 3.51
891 892 6.147164 TCACTGACTGACCTAATTAAAAAGCG 59.853 38.462 0.00 0.00 0.00 4.68
892 893 5.411669 ACTGACTGACCTAATTAAAAAGCGG 59.588 40.000 0.00 0.00 0.00 5.52
893 894 5.553123 TGACTGACCTAATTAAAAAGCGGA 58.447 37.500 0.00 0.00 0.00 5.54
894 895 5.410439 TGACTGACCTAATTAAAAAGCGGAC 59.590 40.000 0.00 0.00 0.00 4.79
895 896 4.390909 ACTGACCTAATTAAAAAGCGGACG 59.609 41.667 0.00 0.00 0.00 4.79
896 897 3.125658 TGACCTAATTAAAAAGCGGACGC 59.874 43.478 8.91 8.91 42.33 5.19
924 925 4.725556 GCGGATGAGCGATACAAATAAA 57.274 40.909 0.00 0.00 0.00 1.40
925 926 4.455124 GCGGATGAGCGATACAAATAAAC 58.545 43.478 0.00 0.00 0.00 2.01
926 927 4.025229 GCGGATGAGCGATACAAATAAACA 60.025 41.667 0.00 0.00 0.00 2.83
927 928 5.503357 GCGGATGAGCGATACAAATAAACAA 60.503 40.000 0.00 0.00 0.00 2.83
928 929 6.482835 CGGATGAGCGATACAAATAAACAAA 58.517 36.000 0.00 0.00 0.00 2.83
929 930 6.964370 CGGATGAGCGATACAAATAAACAAAA 59.036 34.615 0.00 0.00 0.00 2.44
930 931 7.483375 CGGATGAGCGATACAAATAAACAAAAA 59.517 33.333 0.00 0.00 0.00 1.94
950 951 4.468095 AAAACGGACAAAATCGAGTCTG 57.532 40.909 9.21 9.21 44.68 3.51
951 952 2.814280 ACGGACAAAATCGAGTCTGT 57.186 45.000 10.35 10.35 46.53 3.41
953 954 2.947852 CGGACAAAATCGAGTCTGTCT 58.052 47.619 17.77 0.00 38.57 3.41
954 955 2.663602 CGGACAAAATCGAGTCTGTCTG 59.336 50.000 17.77 15.52 38.57 3.51
955 956 2.996621 GGACAAAATCGAGTCTGTCTGG 59.003 50.000 17.77 0.00 38.57 3.86
956 957 2.996621 GACAAAATCGAGTCTGTCTGGG 59.003 50.000 11.85 0.00 36.18 4.45
957 958 2.368875 ACAAAATCGAGTCTGTCTGGGT 59.631 45.455 0.00 0.00 0.00 4.51
958 959 2.996621 CAAAATCGAGTCTGTCTGGGTC 59.003 50.000 0.00 0.00 0.00 4.46
959 960 0.811915 AATCGAGTCTGTCTGGGTCG 59.188 55.000 0.00 0.00 0.00 4.79
960 961 1.032657 ATCGAGTCTGTCTGGGTCGG 61.033 60.000 0.00 0.00 0.00 4.79
961 962 2.574399 GAGTCTGTCTGGGTCGGC 59.426 66.667 0.00 0.00 0.00 5.54
962 963 1.979693 GAGTCTGTCTGGGTCGGCT 60.980 63.158 0.00 0.00 0.00 5.52
963 964 1.939769 GAGTCTGTCTGGGTCGGCTC 61.940 65.000 0.00 0.00 0.00 4.70
964 965 3.062466 TCTGTCTGGGTCGGCTCG 61.062 66.667 0.00 0.00 0.00 5.03
965 966 3.374402 CTGTCTGGGTCGGCTCGT 61.374 66.667 0.00 0.00 0.00 4.18
966 967 2.915659 TGTCTGGGTCGGCTCGTT 60.916 61.111 0.00 0.00 0.00 3.85
967 968 2.432628 GTCTGGGTCGGCTCGTTG 60.433 66.667 0.00 0.00 0.00 4.10
968 969 3.691342 TCTGGGTCGGCTCGTTGG 61.691 66.667 0.00 0.00 0.00 3.77
969 970 3.691342 CTGGGTCGGCTCGTTGGA 61.691 66.667 0.00 0.00 0.00 3.53
970 971 3.649277 CTGGGTCGGCTCGTTGGAG 62.649 68.421 0.00 0.00 43.46 3.86
971 972 3.692406 GGGTCGGCTCGTTGGAGT 61.692 66.667 0.00 0.00 42.53 3.85
972 973 2.342648 GGTCGGCTCGTTGGAGTT 59.657 61.111 0.00 0.00 42.53 3.01
973 974 2.027625 GGTCGGCTCGTTGGAGTTG 61.028 63.158 0.00 0.00 42.53 3.16
974 975 2.357034 TCGGCTCGTTGGAGTTGC 60.357 61.111 0.00 0.00 42.53 4.17
975 976 2.357517 CGGCTCGTTGGAGTTGCT 60.358 61.111 0.00 0.00 42.53 3.91
976 977 2.383527 CGGCTCGTTGGAGTTGCTC 61.384 63.158 0.00 0.00 42.53 4.26
983 984 3.596214 TCGTTGGAGTTGCTCTTATTCC 58.404 45.455 0.00 0.00 0.00 3.01
1171 1172 2.111251 GCCTATTCGCCCCCAGTC 59.889 66.667 0.00 0.00 0.00 3.51
1258 1259 2.428085 GCCTCTTCCTCGTCCTCCC 61.428 68.421 0.00 0.00 0.00 4.30
1260 1261 1.758906 CTCTTCCTCGTCCTCCCCC 60.759 68.421 0.00 0.00 0.00 5.40
1460 1461 3.478540 GGAACCTTCTTGGGATCCG 57.521 57.895 5.45 0.00 41.11 4.18
1462 1463 1.835531 GGAACCTTCTTGGGATCCGTA 59.164 52.381 5.45 0.00 41.11 4.02
1737 1738 7.175104 TGTTGGCTTTTACCTATGAATTCTCT 58.825 34.615 7.05 0.00 0.00 3.10
1750 1751 8.944029 CCTATGAATTCTCTAGGTTTGCATATG 58.056 37.037 18.99 0.00 0.00 1.78
1758 1759 6.484643 TCTCTAGGTTTGCATATGCTTTGATC 59.515 38.462 27.13 11.34 42.66 2.92
1767 1768 6.731164 TGCATATGCTTTGATCACACAATAG 58.269 36.000 27.13 0.00 42.66 1.73
1773 1774 5.120674 TGCTTTGATCACACAATAGTCGAAG 59.879 40.000 0.00 0.00 34.76 3.79
1791 1792 6.039616 GTCGAAGTCAGAGATGAAGCTATTT 58.960 40.000 0.00 0.00 0.00 1.40
1792 1793 6.533367 GTCGAAGTCAGAGATGAAGCTATTTT 59.467 38.462 0.00 0.00 0.00 1.82
1793 1794 6.754209 TCGAAGTCAGAGATGAAGCTATTTTC 59.246 38.462 0.00 0.00 0.00 2.29
1794 1795 6.291532 CGAAGTCAGAGATGAAGCTATTTTCG 60.292 42.308 0.00 0.00 0.00 3.46
1795 1796 6.214191 AGTCAGAGATGAAGCTATTTTCGA 57.786 37.500 0.00 0.00 0.00 3.71
1796 1797 6.815089 AGTCAGAGATGAAGCTATTTTCGAT 58.185 36.000 0.00 0.00 0.00 3.59
1797 1798 7.946207 AGTCAGAGATGAAGCTATTTTCGATA 58.054 34.615 0.00 0.00 0.00 2.92
1798 1799 7.865385 AGTCAGAGATGAAGCTATTTTCGATAC 59.135 37.037 0.00 0.00 0.00 2.24
1799 1800 7.865385 GTCAGAGATGAAGCTATTTTCGATACT 59.135 37.037 0.00 0.00 0.00 2.12
1800 1801 9.067986 TCAGAGATGAAGCTATTTTCGATACTA 57.932 33.333 0.00 0.00 0.00 1.82
1801 1802 9.340695 CAGAGATGAAGCTATTTTCGATACTAG 57.659 37.037 0.00 0.00 0.00 2.57
1804 1805 8.861086 AGATGAAGCTATTTTCGATACTAGGAA 58.139 33.333 0.00 0.00 0.00 3.36
1828 1829 7.976135 AGTCACTTAGTCGTTCTAGAGTAAA 57.024 36.000 0.00 0.00 36.10 2.01
1830 1831 9.012161 AGTCACTTAGTCGTTCTAGAGTAAATT 57.988 33.333 0.00 0.00 36.10 1.82
1853 1854 3.008330 AGTTCAGATGAGCAATGCAGAC 58.992 45.455 8.35 0.00 0.00 3.51
1882 1883 8.378172 TCTGAATCTTTTGTTCGTGTTATTCT 57.622 30.769 0.00 0.00 0.00 2.40
1966 1968 2.156098 TGGTTAAGGTTTAGCTTGCCG 58.844 47.619 0.00 0.00 0.00 5.69
2025 2027 1.200948 GTGAGCAAAGAGGCATTGACC 59.799 52.381 2.44 0.00 35.83 4.02
2065 2068 6.466812 ACCCATCCAAACAAAGATCAATTTC 58.533 36.000 0.00 0.00 0.00 2.17
2075 2078 6.694447 ACAAAGATCAATTTCTTGGTCATGG 58.306 36.000 0.00 0.00 43.71 3.66
2081 2084 6.669125 TCAATTTCTTGGTCATGGTCAAAT 57.331 33.333 0.00 0.00 32.95 2.32
2082 2085 7.773489 TCAATTTCTTGGTCATGGTCAAATA 57.227 32.000 0.00 0.00 32.95 1.40
2083 2086 7.829725 TCAATTTCTTGGTCATGGTCAAATAG 58.170 34.615 0.00 0.00 32.95 1.73
2084 2087 5.643379 TTTCTTGGTCATGGTCAAATAGC 57.357 39.130 0.00 0.00 0.00 2.97
2085 2088 4.574674 TCTTGGTCATGGTCAAATAGCT 57.425 40.909 0.00 0.00 0.00 3.32
2086 2089 4.264253 TCTTGGTCATGGTCAAATAGCTG 58.736 43.478 0.00 0.00 0.00 4.24
2090 2093 3.209410 GTCATGGTCAAATAGCTGGGAG 58.791 50.000 0.00 0.00 0.00 4.30
2514 2517 1.668101 CGTAGGGTCTCTGACAGGGC 61.668 65.000 1.81 0.00 33.68 5.19
2515 2518 1.379977 TAGGGTCTCTGACAGGGCG 60.380 63.158 1.81 0.00 33.68 6.13
2519 2522 3.071206 TCTCTGACAGGGCGGCTC 61.071 66.667 9.56 0.00 0.00 4.70
2568 2571 4.517285 GAGAGGTGTTGATATCCTTTGCA 58.483 43.478 0.00 0.00 0.00 4.08
2777 2780 6.542821 TGAGGACTTGGTTCTCAATGTTATT 58.457 36.000 6.23 0.00 44.21 1.40
2926 2929 3.057104 CACGTGGGTACATCTAACACAGA 60.057 47.826 7.95 0.00 37.79 3.41
3106 3109 5.126699 AGCCAGATTGATTTCATCCTCTT 57.873 39.130 0.00 0.00 0.00 2.85
3623 3626 0.392595 GGTTAGGCACGAAGGAAGGG 60.393 60.000 0.00 0.00 0.00 3.95
3751 3873 4.322273 CGAGGAGATTAAGCATAGATGGCA 60.322 45.833 0.00 0.00 0.00 4.92
3942 4064 2.597455 CCATTGAGGTGTGGAAAGGTT 58.403 47.619 0.00 0.00 37.72 3.50
4256 4379 6.770286 ATGGAGAGATATAGGGAGCAAAAA 57.230 37.500 0.00 0.00 0.00 1.94
4281 4404 5.754782 AGGACTTGCATATGGTGTTCATTA 58.245 37.500 4.56 0.00 37.30 1.90
4310 4433 5.721960 GGAGAAGGCCTATGATAAGATACCA 59.278 44.000 5.16 0.00 0.00 3.25
4690 4815 6.711277 ACATGATGTGTGGTTTCAGTACTAT 58.289 36.000 0.00 0.00 40.28 2.12
4965 5094 5.296813 GACTAAAAGGCGACATGTTCAAT 57.703 39.130 0.00 0.00 0.00 2.57
5045 5174 4.440839 TCGAGTCCGGAATGATGATATG 57.559 45.455 10.26 0.00 36.24 1.78
5054 5183 4.981054 CGGAATGATGATATGCGAGATAGG 59.019 45.833 0.00 0.00 0.00 2.57
5078 5207 1.005450 GGGGTAGCACCAATTGAGGAA 59.995 52.381 7.12 0.00 41.02 3.36
5121 5250 4.210331 GAGATGGTTTGGGCATATTCAGT 58.790 43.478 0.00 0.00 0.00 3.41
5123 5252 3.168035 TGGTTTGGGCATATTCAGTGT 57.832 42.857 0.00 0.00 0.00 3.55
5408 5539 4.060038 TGTTGTTGTTGTTGTTGTTGGT 57.940 36.364 0.00 0.00 0.00 3.67
5409 5540 4.051922 TGTTGTTGTTGTTGTTGTTGGTC 58.948 39.130 0.00 0.00 0.00 4.02
5410 5541 4.051922 GTTGTTGTTGTTGTTGTTGGTCA 58.948 39.130 0.00 0.00 0.00 4.02
5411 5542 4.322080 TGTTGTTGTTGTTGTTGGTCAA 57.678 36.364 0.00 0.00 0.00 3.18
5412 5543 4.693283 TGTTGTTGTTGTTGTTGGTCAAA 58.307 34.783 0.00 0.00 37.81 2.69
5413 5544 5.300752 TGTTGTTGTTGTTGTTGGTCAAAT 58.699 33.333 0.00 0.00 37.81 2.32
5416 5547 5.105752 TGTTGTTGTTGTTGGTCAAATAGC 58.894 37.500 0.00 0.00 37.81 2.97
5427 5558 2.158798 GGTCAAATAGCTGGGAGGGTAC 60.159 54.545 0.00 0.00 0.00 3.34
5529 5660 4.457257 ACAGAGCTTTAAAGACAGGATTGC 59.543 41.667 19.48 0.81 0.00 3.56
5550 5703 4.704540 TGCTTGTTGGATGTAATTAGTGGG 59.295 41.667 0.00 0.00 0.00 4.61
5659 5812 3.482809 CTGACAGACAGCATGCGG 58.517 61.111 16.70 16.70 42.53 5.69
5691 5845 5.604758 TTTGTCTATAGCAGCATCTGTCT 57.395 39.130 0.00 0.00 33.43 3.41
5695 5849 5.814188 TGTCTATAGCAGCATCTGTCTTTTG 59.186 40.000 0.00 0.00 33.43 2.44
5696 5850 5.814705 GTCTATAGCAGCATCTGTCTTTTGT 59.185 40.000 0.00 0.00 33.43 2.83
5697 5851 6.980978 GTCTATAGCAGCATCTGTCTTTTGTA 59.019 38.462 0.00 0.00 33.43 2.41
5706 5892 8.506437 CAGCATCTGTCTTTTGTATGTTAGAAA 58.494 33.333 0.00 0.00 0.00 2.52
5769 5956 3.710209 AGGGACATGACCTGAAGAAAG 57.290 47.619 13.95 0.00 36.85 2.62
5770 5957 3.251484 AGGGACATGACCTGAAGAAAGA 58.749 45.455 13.95 0.00 36.85 2.52
5771 5958 3.262915 AGGGACATGACCTGAAGAAAGAG 59.737 47.826 13.95 0.00 36.85 2.85
5772 5959 3.008485 GGGACATGACCTGAAGAAAGAGT 59.992 47.826 13.95 0.00 0.00 3.24
5773 5960 4.249661 GGACATGACCTGAAGAAAGAGTC 58.750 47.826 6.99 0.00 0.00 3.36
5774 5961 4.262635 GGACATGACCTGAAGAAAGAGTCA 60.263 45.833 6.99 0.00 41.35 3.41
5775 5962 5.296151 ACATGACCTGAAGAAAGAGTCAA 57.704 39.130 0.00 0.00 40.56 3.18
5776 5963 5.684704 ACATGACCTGAAGAAAGAGTCAAA 58.315 37.500 0.00 0.00 40.56 2.69
5883 6070 3.058016 AGTGACATTGTTCATCCAAAGCG 60.058 43.478 0.00 0.00 0.00 4.68
5955 6142 5.360714 TGGCCATCTCCAATTTTCTCATAAC 59.639 40.000 0.00 0.00 32.18 1.89
5960 6147 8.295288 CCATCTCCAATTTTCTCATAACTATGC 58.705 37.037 0.00 0.00 33.76 3.14
6307 6697 6.868339 CGTGATTTCTTTATTTTCCCTTTGCT 59.132 34.615 0.00 0.00 0.00 3.91
6334 6724 8.292448 CAGCTTCTTATGTTGTCAAATACAGTT 58.708 33.333 0.00 0.00 39.87 3.16
6337 6727 8.684386 TTCTTATGTTGTCAAATACAGTTGGA 57.316 30.769 0.00 0.00 39.87 3.53
6348 6738 8.190122 GTCAAATACAGTTGGATATTTGCATCA 58.810 33.333 10.48 0.00 43.69 3.07
6531 6921 4.657055 CATCAGTCGTTCTACAGAGACAG 58.343 47.826 2.59 0.00 36.18 3.51
6552 6942 2.611292 GCCATCATTCTCTGAACTTCCG 59.389 50.000 0.00 0.00 37.44 4.30
6566 6956 5.235516 TGAACTTCCGAATAGACCAGAAAC 58.764 41.667 0.00 0.00 0.00 2.78
6733 7623 6.215121 TGTAATTTGCATTGCATGTATAGCC 58.785 36.000 12.95 0.00 38.76 3.93
6764 7654 7.106239 AGTAGTATCCTGGAACATTTTGTGAG 58.894 38.462 0.00 0.00 38.20 3.51
6931 7821 3.683937 GGGCTGCATGCGGTTTGT 61.684 61.111 26.79 0.00 44.05 2.83
7010 7900 0.394565 AGTTTCTTGCGAGCCTGACT 59.605 50.000 0.00 0.00 0.00 3.41
7012 7902 0.603707 TTTCTTGCGAGCCTGACTGG 60.604 55.000 0.00 0.00 39.35 4.00
7079 7969 2.520982 CGGAGGGGGCGTCTCATA 60.521 66.667 0.00 0.00 33.18 2.15
7084 7974 1.067582 GGGGGCGTCTCATAACTCG 59.932 63.158 0.00 0.00 0.00 4.18
7088 7978 1.591863 GCGTCTCATAACTCGCCCC 60.592 63.158 0.00 0.00 42.33 5.80
7106 7996 1.472662 CCCCACTCTTCTGTCACCGT 61.473 60.000 0.00 0.00 0.00 4.83
7107 7997 0.393077 CCCACTCTTCTGTCACCGTT 59.607 55.000 0.00 0.00 0.00 4.44
7111 8001 2.032620 ACTCTTCTGTCACCGTTCAGT 58.967 47.619 0.00 0.00 33.89 3.41
7112 8002 2.034812 ACTCTTCTGTCACCGTTCAGTC 59.965 50.000 0.00 0.00 33.89 3.51
7125 8015 0.396435 TTCAGTCGCACTGTTCCCAT 59.604 50.000 13.59 0.00 46.03 4.00
7139 8029 1.456518 CCCATCGCTCCCTCTCTCA 60.457 63.158 0.00 0.00 0.00 3.27
7140 8030 0.831288 CCCATCGCTCCCTCTCTCAT 60.831 60.000 0.00 0.00 0.00 2.90
7152 8044 1.144936 CTCTCATTCACCGCCCCTC 59.855 63.158 0.00 0.00 0.00 4.30
7164 8056 2.710826 GCCCCTCCCTCTCCTCTCT 61.711 68.421 0.00 0.00 0.00 3.10
7176 8068 0.260230 TCCTCTCTTCCGATGGCTCT 59.740 55.000 0.00 0.00 0.00 4.09
7221 8113 4.436998 GACCCCTGTCGACCAGCG 62.437 72.222 14.12 3.13 40.06 5.18
7226 8118 3.250323 CTGTCGACCAGCGCATCG 61.250 66.667 19.01 19.01 40.61 3.84
7246 8138 3.079478 AGCATCCAGGAGCGCTGA 61.079 61.111 18.48 6.02 32.33 4.26
7267 8159 2.058595 GGCCGGGCTCTAGAACTCA 61.059 63.158 22.87 0.00 0.00 3.41
7269 8161 1.038130 GCCGGGCTCTAGAACTCAGA 61.038 60.000 12.87 0.00 0.00 3.27
7270 8162 1.028905 CCGGGCTCTAGAACTCAGAG 58.971 60.000 0.00 0.00 42.09 3.35
7366 8261 3.832846 GGATTCCGGGGCCCCATT 61.833 66.667 40.06 21.16 35.37 3.16
7367 8262 2.521708 GATTCCGGGGCCCCATTG 60.522 66.667 40.06 26.79 35.37 2.82
7368 8263 4.156215 ATTCCGGGGCCCCATTGG 62.156 66.667 40.06 31.63 35.37 3.16
7393 8288 4.914128 GGTTTTCTTGACCCCCGT 57.086 55.556 0.00 0.00 0.00 5.28
7394 8289 2.637521 GGTTTTCTTGACCCCCGTC 58.362 57.895 0.00 0.00 39.66 4.79
7395 8290 0.892358 GGTTTTCTTGACCCCCGTCC 60.892 60.000 0.00 0.00 38.32 4.79
7396 8291 0.179012 GTTTTCTTGACCCCCGTCCA 60.179 55.000 0.00 0.00 38.32 4.02
7397 8292 0.551879 TTTTCTTGACCCCCGTCCAA 59.448 50.000 0.00 0.00 38.32 3.53
7398 8293 0.109723 TTTCTTGACCCCCGTCCAAG 59.890 55.000 0.00 0.00 38.32 3.61
7399 8294 1.774894 TTCTTGACCCCCGTCCAAGG 61.775 60.000 0.00 0.00 38.32 3.61
7407 8302 2.942641 CCCGTCCAAGGGTTTTCTC 58.057 57.895 0.00 0.00 46.38 2.87
7408 8303 0.608308 CCCGTCCAAGGGTTTTCTCC 60.608 60.000 0.00 0.00 46.38 3.71
7409 8304 0.400594 CCGTCCAAGGGTTTTCTCCT 59.599 55.000 0.00 0.00 35.88 3.69
7410 8305 1.523758 CGTCCAAGGGTTTTCTCCTG 58.476 55.000 0.00 0.00 34.34 3.86
7411 8306 1.202770 CGTCCAAGGGTTTTCTCCTGT 60.203 52.381 0.00 0.00 34.34 4.00
7412 8307 2.505405 GTCCAAGGGTTTTCTCCTGTC 58.495 52.381 0.00 0.00 34.34 3.51
7413 8308 1.071699 TCCAAGGGTTTTCTCCTGTCG 59.928 52.381 0.00 0.00 34.34 4.35
7414 8309 1.523758 CAAGGGTTTTCTCCTGTCGG 58.476 55.000 0.00 0.00 34.34 4.79
7415 8310 0.250770 AAGGGTTTTCTCCTGTCGGC 60.251 55.000 0.00 0.00 34.34 5.54
7416 8311 1.072505 GGGTTTTCTCCTGTCGGCA 59.927 57.895 0.00 0.00 0.00 5.69
7417 8312 0.955919 GGGTTTTCTCCTGTCGGCAG 60.956 60.000 10.88 10.88 42.22 4.85
7432 8327 3.827898 CAGGCCGTCCTCCTCGAC 61.828 72.222 0.00 0.00 41.93 4.20
7435 8330 3.519930 GCCGTCCTCCTCGACCTC 61.520 72.222 0.00 0.00 0.00 3.85
7436 8331 2.829458 CCGTCCTCCTCGACCTCC 60.829 72.222 0.00 0.00 0.00 4.30
7437 8332 3.203412 CGTCCTCCTCGACCTCCG 61.203 72.222 0.00 0.00 40.25 4.63
7438 8333 2.829458 GTCCTCCTCGACCTCCGG 60.829 72.222 0.00 0.00 39.14 5.14
7439 8334 4.816984 TCCTCCTCGACCTCCGGC 62.817 72.222 0.00 0.00 39.14 6.13
7462 8357 4.241555 GATGAGCACGGGGCCGAT 62.242 66.667 0.00 0.00 46.50 4.18
7463 8358 4.552365 ATGAGCACGGGGCCGATG 62.552 66.667 0.00 0.00 46.50 3.84
7475 8370 3.957535 CCGATGCCGCAAGCCATC 61.958 66.667 0.00 2.43 42.71 3.51
7476 8371 4.303603 CGATGCCGCAAGCCATCG 62.304 66.667 15.53 15.53 42.09 3.84
7477 8372 4.619140 GATGCCGCAAGCCATCGC 62.619 66.667 0.00 0.00 42.71 4.58
7484 8379 2.825836 CAAGCCATCGCCAGGGTC 60.826 66.667 0.00 0.00 35.44 4.46
7485 8380 4.473520 AAGCCATCGCCAGGGTCG 62.474 66.667 0.00 0.00 35.44 4.79
7494 8389 4.787280 CCAGGGTCGGCTCCTCCT 62.787 72.222 0.00 0.00 31.06 3.69
7495 8390 3.151022 CAGGGTCGGCTCCTCCTC 61.151 72.222 0.00 0.00 31.06 3.71
7496 8391 3.351885 AGGGTCGGCTCCTCCTCT 61.352 66.667 0.00 0.00 0.00 3.69
7497 8392 3.151022 GGGTCGGCTCCTCCTCTG 61.151 72.222 0.00 0.00 0.00 3.35
7498 8393 3.844090 GGTCGGCTCCTCCTCTGC 61.844 72.222 0.00 0.00 0.00 4.26
7499 8394 2.757917 GTCGGCTCCTCCTCTGCT 60.758 66.667 0.00 0.00 0.00 4.24
7500 8395 2.441164 TCGGCTCCTCCTCTGCTC 60.441 66.667 0.00 0.00 0.00 4.26
7501 8396 3.535962 CGGCTCCTCCTCTGCTCC 61.536 72.222 0.00 0.00 0.00 4.70
7502 8397 3.535962 GGCTCCTCCTCTGCTCCG 61.536 72.222 0.00 0.00 0.00 4.63
7503 8398 4.219999 GCTCCTCCTCTGCTCCGC 62.220 72.222 0.00 0.00 0.00 5.54
7504 8399 3.535962 CTCCTCCTCTGCTCCGCC 61.536 72.222 0.00 0.00 0.00 6.13
7505 8400 4.382541 TCCTCCTCTGCTCCGCCA 62.383 66.667 0.00 0.00 0.00 5.69
7506 8401 4.154347 CCTCCTCTGCTCCGCCAC 62.154 72.222 0.00 0.00 0.00 5.01
7507 8402 4.154347 CTCCTCTGCTCCGCCACC 62.154 72.222 0.00 0.00 0.00 4.61
7508 8403 4.704103 TCCTCTGCTCCGCCACCT 62.704 66.667 0.00 0.00 0.00 4.00
7509 8404 4.154347 CCTCTGCTCCGCCACCTC 62.154 72.222 0.00 0.00 0.00 3.85
7510 8405 3.073735 CTCTGCTCCGCCACCTCT 61.074 66.667 0.00 0.00 0.00 3.69
7511 8406 3.071206 TCTGCTCCGCCACCTCTC 61.071 66.667 0.00 0.00 0.00 3.20
7512 8407 3.073735 CTGCTCCGCCACCTCTCT 61.074 66.667 0.00 0.00 0.00 3.10
7513 8408 3.071206 TGCTCCGCCACCTCTCTC 61.071 66.667 0.00 0.00 0.00 3.20
7514 8409 3.844090 GCTCCGCCACCTCTCTCC 61.844 72.222 0.00 0.00 0.00 3.71
7515 8410 2.043450 CTCCGCCACCTCTCTCCT 60.043 66.667 0.00 0.00 0.00 3.69
7516 8411 1.684049 CTCCGCCACCTCTCTCCTT 60.684 63.158 0.00 0.00 0.00 3.36
7517 8412 1.671901 CTCCGCCACCTCTCTCCTTC 61.672 65.000 0.00 0.00 0.00 3.46
7518 8413 2.726351 CCGCCACCTCTCTCCTTCC 61.726 68.421 0.00 0.00 0.00 3.46
7519 8414 2.726351 CGCCACCTCTCTCCTTCCC 61.726 68.421 0.00 0.00 0.00 3.97
7520 8415 1.613630 GCCACCTCTCTCCTTCCCA 60.614 63.158 0.00 0.00 0.00 4.37
7521 8416 1.904990 GCCACCTCTCTCCTTCCCAC 61.905 65.000 0.00 0.00 0.00 4.61
7522 8417 1.268283 CCACCTCTCTCCTTCCCACC 61.268 65.000 0.00 0.00 0.00 4.61
7523 8418 1.305381 ACCTCTCTCCTTCCCACCG 60.305 63.158 0.00 0.00 0.00 4.94
7524 8419 2.060980 CCTCTCTCCTTCCCACCGG 61.061 68.421 0.00 0.00 0.00 5.28
7525 8420 2.038975 TCTCTCCTTCCCACCGGG 59.961 66.667 6.32 0.00 46.11 5.73
7542 8437 2.675423 GGTTTTCACCCCGGCCTC 60.675 66.667 0.00 0.00 37.03 4.70
7543 8438 3.053896 GTTTTCACCCCGGCCTCG 61.054 66.667 0.00 0.00 0.00 4.63
7554 8449 3.818787 GGCCTCGGTTCGCTACGA 61.819 66.667 0.00 0.00 37.56 3.43
7555 8450 2.578981 GCCTCGGTTCGCTACGAC 60.579 66.667 0.00 0.00 34.89 4.34
7556 8451 3.048941 GCCTCGGTTCGCTACGACT 62.049 63.158 0.00 0.00 34.89 4.18
7557 8452 1.505353 CCTCGGTTCGCTACGACTT 59.495 57.895 0.00 0.00 34.89 3.01
7558 8453 0.522915 CCTCGGTTCGCTACGACTTC 60.523 60.000 0.00 0.00 34.89 3.01
7559 8454 0.167470 CTCGGTTCGCTACGACTTCA 59.833 55.000 0.00 0.00 34.89 3.02
7560 8455 0.110056 TCGGTTCGCTACGACTTCAC 60.110 55.000 0.00 0.00 34.89 3.18
7561 8456 1.393597 CGGTTCGCTACGACTTCACG 61.394 60.000 0.00 0.00 34.89 4.35
7563 8458 0.701303 GTTCGCTACGACTTCACGTG 59.299 55.000 9.94 9.94 46.02 4.49
7564 8459 1.000233 TTCGCTACGACTTCACGTGC 61.000 55.000 11.67 0.00 46.02 5.34
7565 8460 1.442184 CGCTACGACTTCACGTGCT 60.442 57.895 11.67 0.00 46.02 4.40
7566 8461 1.396543 CGCTACGACTTCACGTGCTC 61.397 60.000 11.67 4.19 46.02 4.26
7567 8462 1.071567 GCTACGACTTCACGTGCTCC 61.072 60.000 11.67 0.00 46.02 4.70
7568 8463 0.793478 CTACGACTTCACGTGCTCCG 60.793 60.000 11.67 13.46 46.02 4.63
7569 8464 2.191354 TACGACTTCACGTGCTCCGG 62.191 60.000 11.67 0.00 46.02 5.14
7570 8465 2.338984 GACTTCACGTGCTCCGGT 59.661 61.111 11.67 4.61 42.24 5.28
7571 8466 2.022129 GACTTCACGTGCTCCGGTG 61.022 63.158 11.67 0.00 42.24 4.94
7572 8467 2.338620 CTTCACGTGCTCCGGTGA 59.661 61.111 11.67 0.00 42.24 4.02
7573 8468 1.734477 CTTCACGTGCTCCGGTGAG 60.734 63.158 11.67 0.00 42.24 3.51
7574 8469 2.421877 CTTCACGTGCTCCGGTGAGT 62.422 60.000 11.67 0.79 40.95 3.41
7575 8470 2.416244 TTCACGTGCTCCGGTGAGTC 62.416 60.000 11.67 0.00 40.95 3.36
7576 8471 2.910479 ACGTGCTCCGGTGAGTCA 60.910 61.111 7.92 0.00 40.95 3.41
7577 8472 2.338620 CGTGCTCCGGTGAGTCAA 59.661 61.111 7.92 0.00 40.95 3.18
7578 8473 1.300620 CGTGCTCCGGTGAGTCAAA 60.301 57.895 7.92 0.00 40.95 2.69
7579 8474 1.557443 CGTGCTCCGGTGAGTCAAAC 61.557 60.000 7.92 0.00 40.95 2.93
7580 8475 0.249911 GTGCTCCGGTGAGTCAAACT 60.250 55.000 7.92 0.00 40.95 2.66
7581 8476 0.033504 TGCTCCGGTGAGTCAAACTC 59.966 55.000 7.92 0.08 45.26 3.01
7582 8477 0.670854 GCTCCGGTGAGTCAAACTCC 60.671 60.000 7.92 0.00 44.44 3.85
7583 8478 0.037232 CTCCGGTGAGTCAAACTCCC 60.037 60.000 0.00 4.99 44.44 4.30
7584 8479 0.471211 TCCGGTGAGTCAAACTCCCT 60.471 55.000 0.00 0.00 44.44 4.20
7585 8480 0.037232 CCGGTGAGTCAAACTCCCTC 60.037 60.000 0.00 0.00 44.44 4.30
7586 8481 0.679505 CGGTGAGTCAAACTCCCTCA 59.320 55.000 0.00 0.00 44.44 3.86
7587 8482 1.070134 CGGTGAGTCAAACTCCCTCAA 59.930 52.381 0.00 0.00 44.44 3.02
7588 8483 2.289694 CGGTGAGTCAAACTCCCTCAAT 60.290 50.000 0.00 0.00 44.44 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 3.554692 GATCCAACACGCGAGCGG 61.555 66.667 21.69 9.99 44.69 5.52
6 7 3.902063 CGATCCAACACGCGAGCG 61.902 66.667 15.93 16.38 46.03 5.03
7 8 3.554692 CCGATCCAACACGCGAGC 61.555 66.667 15.93 0.00 0.00 5.03
8 9 2.126071 ACCGATCCAACACGCGAG 60.126 61.111 15.93 7.88 0.00 5.03
9 10 2.431771 CACCGATCCAACACGCGA 60.432 61.111 15.93 0.00 0.00 5.87
10 11 3.487202 CCACCGATCCAACACGCG 61.487 66.667 3.53 3.53 0.00 6.01
11 12 2.047655 TCCACCGATCCAACACGC 60.048 61.111 0.00 0.00 0.00 5.34
12 13 2.100631 GCTCCACCGATCCAACACG 61.101 63.158 0.00 0.00 0.00 4.49
13 14 0.741221 GAGCTCCACCGATCCAACAC 60.741 60.000 0.87 0.00 0.00 3.32
14 15 1.596934 GAGCTCCACCGATCCAACA 59.403 57.895 0.87 0.00 0.00 3.33
15 16 1.519455 CGAGCTCCACCGATCCAAC 60.519 63.158 8.47 0.00 0.00 3.77
16 17 2.892640 CGAGCTCCACCGATCCAA 59.107 61.111 8.47 0.00 0.00 3.53
17 18 3.838271 GCGAGCTCCACCGATCCA 61.838 66.667 8.47 0.00 0.00 3.41
18 19 3.838271 TGCGAGCTCCACCGATCC 61.838 66.667 8.47 0.00 0.00 3.36
19 20 2.583593 GTGCGAGCTCCACCGATC 60.584 66.667 19.08 0.74 0.00 3.69
20 21 4.498520 CGTGCGAGCTCCACCGAT 62.499 66.667 22.03 0.00 0.00 4.18
38 39 2.430921 GATCATAGCGCGACCGGG 60.431 66.667 12.10 1.97 34.32 5.73
39 40 2.801162 CGATCATAGCGCGACCGG 60.801 66.667 12.10 0.00 34.32 5.28
40 41 3.461982 GCGATCATAGCGCGACCG 61.462 66.667 12.10 0.00 45.27 4.79
51 52 0.462581 GCAGGTGGATGAAGCGATCA 60.463 55.000 0.00 0.00 43.67 2.92
52 53 1.162800 GGCAGGTGGATGAAGCGATC 61.163 60.000 0.00 0.00 0.00 3.69
53 54 1.153086 GGCAGGTGGATGAAGCGAT 60.153 57.895 0.00 0.00 0.00 4.58
54 55 1.913951 ATGGCAGGTGGATGAAGCGA 61.914 55.000 0.00 0.00 0.00 4.93
55 56 1.452651 ATGGCAGGTGGATGAAGCG 60.453 57.895 0.00 0.00 0.00 4.68
56 57 2.012902 GCATGGCAGGTGGATGAAGC 62.013 60.000 0.00 0.00 0.00 3.86
57 58 1.721664 CGCATGGCAGGTGGATGAAG 61.722 60.000 4.52 0.00 0.00 3.02
58 59 1.750018 CGCATGGCAGGTGGATGAA 60.750 57.895 4.52 0.00 0.00 2.57
59 60 2.124612 CGCATGGCAGGTGGATGA 60.125 61.111 4.52 0.00 0.00 2.92
60 61 2.438975 ACGCATGGCAGGTGGATG 60.439 61.111 17.59 0.00 0.00 3.51
61 62 2.438975 CACGCATGGCAGGTGGAT 60.439 61.111 17.59 0.00 0.00 3.41
62 63 3.899981 GACACGCATGGCAGGTGGA 62.900 63.158 17.59 0.00 36.02 4.02
63 64 3.434319 GACACGCATGGCAGGTGG 61.434 66.667 17.59 8.46 36.02 4.61
64 65 3.792047 CGACACGCATGGCAGGTG 61.792 66.667 11.60 11.60 30.51 4.00
76 77 2.351336 CTATGGGACGAGGGCGACAC 62.351 65.000 0.00 0.00 41.64 3.67
77 78 2.043752 TATGGGACGAGGGCGACA 60.044 61.111 0.00 0.00 41.64 4.35
78 79 1.673808 AACTATGGGACGAGGGCGAC 61.674 60.000 0.00 0.00 41.64 5.19
79 80 1.380785 AACTATGGGACGAGGGCGA 60.381 57.895 0.00 0.00 41.64 5.54
80 81 1.227263 CAACTATGGGACGAGGGCG 60.227 63.158 0.00 0.00 44.79 6.13
81 82 1.523938 GCAACTATGGGACGAGGGC 60.524 63.158 0.00 0.00 0.00 5.19
82 83 1.146263 GGCAACTATGGGACGAGGG 59.854 63.158 0.00 0.00 0.00 4.30
83 84 0.469917 ATGGCAACTATGGGACGAGG 59.530 55.000 0.00 0.00 37.61 4.63
84 85 1.134401 ACATGGCAACTATGGGACGAG 60.134 52.381 0.00 0.00 37.61 4.18
85 86 0.908910 ACATGGCAACTATGGGACGA 59.091 50.000 0.00 0.00 37.61 4.20
86 87 1.750193 AACATGGCAACTATGGGACG 58.250 50.000 0.00 0.00 37.61 4.79
87 88 2.427095 GGAAACATGGCAACTATGGGAC 59.573 50.000 0.00 0.00 37.61 4.46
88 89 2.733956 GGAAACATGGCAACTATGGGA 58.266 47.619 0.00 0.00 37.61 4.37
89 90 1.405105 CGGAAACATGGCAACTATGGG 59.595 52.381 0.00 0.00 37.61 4.00
142 143 2.509166 TTTCTAGCCTCCGACTCTCA 57.491 50.000 0.00 0.00 0.00 3.27
479 480 3.058432 CGACTCGACAGTCTTGGTTCTTA 60.058 47.826 0.00 0.00 46.31 2.10
506 507 1.734137 CCGGATCGTCGATTCAGGT 59.266 57.895 13.87 0.00 0.00 4.00
537 538 3.390135 GGTAAGATTCGATGCGGATTCA 58.610 45.455 0.00 0.00 0.00 2.57
552 553 1.019673 CGAGGGTCGATTCGGTAAGA 58.980 55.000 6.18 0.00 43.74 2.10
617 618 2.670592 GAAACGGGGAACGGTGGG 60.671 66.667 0.00 0.00 45.59 4.61
658 659 4.408821 TGGTGTCCATGGCGGCTC 62.409 66.667 11.43 0.78 33.14 4.70
659 660 4.722700 GTGGTGTCCATGGCGGCT 62.723 66.667 11.43 0.00 35.28 5.52
664 665 3.892740 TTCGGCGTGGTGTCCATGG 62.893 63.158 4.97 4.97 40.61 3.66
665 666 2.358125 TTCGGCGTGGTGTCCATG 60.358 61.111 6.85 3.87 42.95 3.66
666 667 2.358247 GTTCGGCGTGGTGTCCAT 60.358 61.111 6.85 0.00 35.28 3.41
667 668 4.612412 GGTTCGGCGTGGTGTCCA 62.612 66.667 6.85 0.00 0.00 4.02
678 679 4.481112 GCAAGCATGGCGGTTCGG 62.481 66.667 0.00 0.00 31.36 4.30
679 680 4.481112 GGCAAGCATGGCGGTTCG 62.481 66.667 0.00 0.00 42.73 3.95
686 687 4.170062 CGAGCACGGCAAGCATGG 62.170 66.667 0.00 0.00 35.72 3.66
687 688 4.824166 GCGAGCACGGCAAGCATG 62.824 66.667 5.52 0.00 40.15 4.06
691 692 3.485431 CTCAGCGAGCACGGCAAG 61.485 66.667 5.52 0.00 40.15 4.01
713 714 4.443266 AGACGAGGCAAGGCGAGC 62.443 66.667 0.00 0.00 0.00 5.03
714 715 2.202676 GAGACGAGGCAAGGCGAG 60.203 66.667 0.00 0.00 0.00 5.03
715 716 4.116328 CGAGACGAGGCAAGGCGA 62.116 66.667 0.00 0.00 0.00 5.54
760 761 3.726631 GACGAGCTGCGAGGAGACG 62.727 68.421 11.64 3.32 44.57 4.18
761 762 2.101380 GACGAGCTGCGAGGAGAC 59.899 66.667 11.64 0.00 44.57 3.36
762 763 3.134792 GGACGAGCTGCGAGGAGA 61.135 66.667 11.64 0.00 44.57 3.71
763 764 3.137459 AGGACGAGCTGCGAGGAG 61.137 66.667 11.64 0.00 44.57 3.69
764 765 3.443925 CAGGACGAGCTGCGAGGA 61.444 66.667 11.64 0.00 44.57 3.71
765 766 3.443925 TCAGGACGAGCTGCGAGG 61.444 66.667 11.64 0.00 44.57 4.63
766 767 2.202544 GTCAGGACGAGCTGCGAG 60.203 66.667 11.64 0.00 44.57 5.03
797 798 0.740868 TCGAACACATAGCAGGCAGC 60.741 55.000 0.00 0.00 46.19 5.25
798 799 1.002366 GTCGAACACATAGCAGGCAG 58.998 55.000 0.00 0.00 0.00 4.85
799 800 0.320050 TGTCGAACACATAGCAGGCA 59.680 50.000 0.00 0.00 0.00 4.75
800 801 1.438651 TTGTCGAACACATAGCAGGC 58.561 50.000 0.00 0.00 33.90 4.85
801 802 4.406069 CATTTTGTCGAACACATAGCAGG 58.594 43.478 0.00 0.00 33.90 4.85
802 803 3.848019 GCATTTTGTCGAACACATAGCAG 59.152 43.478 0.00 0.00 33.90 4.24
803 804 3.501828 AGCATTTTGTCGAACACATAGCA 59.498 39.130 0.00 0.00 33.90 3.49
804 805 4.083581 AGCATTTTGTCGAACACATAGC 57.916 40.909 0.00 0.00 33.90 2.97
805 806 5.580691 TCCTAGCATTTTGTCGAACACATAG 59.419 40.000 0.00 0.00 33.90 2.23
806 807 5.350365 GTCCTAGCATTTTGTCGAACACATA 59.650 40.000 0.00 0.00 33.90 2.29
807 808 4.154195 GTCCTAGCATTTTGTCGAACACAT 59.846 41.667 0.00 0.00 33.90 3.21
808 809 3.496884 GTCCTAGCATTTTGTCGAACACA 59.503 43.478 0.00 0.00 0.00 3.72
809 810 3.423123 CGTCCTAGCATTTTGTCGAACAC 60.423 47.826 0.00 0.00 0.00 3.32
810 811 2.734606 CGTCCTAGCATTTTGTCGAACA 59.265 45.455 0.00 0.00 0.00 3.18
811 812 2.093783 CCGTCCTAGCATTTTGTCGAAC 59.906 50.000 0.00 0.00 0.00 3.95
812 813 2.028839 TCCGTCCTAGCATTTTGTCGAA 60.029 45.455 0.00 0.00 0.00 3.71
813 814 1.546923 TCCGTCCTAGCATTTTGTCGA 59.453 47.619 0.00 0.00 0.00 4.20
814 815 1.659098 GTCCGTCCTAGCATTTTGTCG 59.341 52.381 0.00 0.00 0.00 4.35
815 816 2.695359 TGTCCGTCCTAGCATTTTGTC 58.305 47.619 0.00 0.00 0.00 3.18
816 817 2.851263 TGTCCGTCCTAGCATTTTGT 57.149 45.000 0.00 0.00 0.00 2.83
817 818 2.223340 GCATGTCCGTCCTAGCATTTTG 60.223 50.000 0.00 0.00 0.00 2.44
818 819 2.017049 GCATGTCCGTCCTAGCATTTT 58.983 47.619 0.00 0.00 0.00 1.82
819 820 1.065491 TGCATGTCCGTCCTAGCATTT 60.065 47.619 0.00 0.00 0.00 2.32
820 821 0.541392 TGCATGTCCGTCCTAGCATT 59.459 50.000 0.00 0.00 0.00 3.56
821 822 0.179073 GTGCATGTCCGTCCTAGCAT 60.179 55.000 0.00 0.00 34.24 3.79
822 823 1.218047 GTGCATGTCCGTCCTAGCA 59.782 57.895 0.00 0.00 0.00 3.49
823 824 0.391130 TTGTGCATGTCCGTCCTAGC 60.391 55.000 0.00 0.00 0.00 3.42
824 825 2.093306 TTTGTGCATGTCCGTCCTAG 57.907 50.000 0.00 0.00 0.00 3.02
825 826 2.552599 TTTTGTGCATGTCCGTCCTA 57.447 45.000 0.00 0.00 0.00 2.94
826 827 1.541147 CATTTTGTGCATGTCCGTCCT 59.459 47.619 0.00 0.00 0.00 3.85
827 828 1.981254 CATTTTGTGCATGTCCGTCC 58.019 50.000 0.00 0.00 0.00 4.79
838 839 1.778591 GACAAACGGACGCATTTTGTG 59.221 47.619 13.99 0.00 42.19 3.33
839 840 1.595976 CGACAAACGGACGCATTTTGT 60.596 47.619 10.38 10.38 44.24 2.83
840 841 1.041726 CGACAAACGGACGCATTTTG 58.958 50.000 5.19 5.19 38.46 2.44
841 842 3.448076 CGACAAACGGACGCATTTT 57.552 47.368 0.00 0.00 38.46 1.82
852 853 0.307760 CAGTGAGCCCAACGACAAAC 59.692 55.000 0.00 0.00 0.00 2.93
853 854 0.179234 TCAGTGAGCCCAACGACAAA 59.821 50.000 0.00 0.00 0.00 2.83
854 855 0.531974 GTCAGTGAGCCCAACGACAA 60.532 55.000 0.00 0.00 0.00 3.18
855 856 1.069090 GTCAGTGAGCCCAACGACA 59.931 57.895 0.00 0.00 0.00 4.35
856 857 0.946221 CAGTCAGTGAGCCCAACGAC 60.946 60.000 0.00 0.00 0.00 4.34
857 858 1.112916 TCAGTCAGTGAGCCCAACGA 61.113 55.000 0.00 0.00 0.00 3.85
858 859 0.946221 GTCAGTCAGTGAGCCCAACG 60.946 60.000 0.00 0.00 35.13 4.10
859 860 0.603975 GGTCAGTCAGTGAGCCCAAC 60.604 60.000 0.00 0.00 46.33 3.77
860 861 1.754745 GGTCAGTCAGTGAGCCCAA 59.245 57.895 0.00 0.00 46.33 4.12
861 862 3.471620 GGTCAGTCAGTGAGCCCA 58.528 61.111 0.00 0.00 46.33 5.36
865 866 7.522374 GCTTTTTAATTAGGTCAGTCAGTGAG 58.478 38.462 0.00 0.00 35.13 3.51
866 867 6.147164 CGCTTTTTAATTAGGTCAGTCAGTGA 59.853 38.462 0.00 0.00 0.00 3.41
867 868 6.307155 CGCTTTTTAATTAGGTCAGTCAGTG 58.693 40.000 0.00 0.00 0.00 3.66
868 869 5.411669 CCGCTTTTTAATTAGGTCAGTCAGT 59.588 40.000 0.00 0.00 0.00 3.41
869 870 5.642063 TCCGCTTTTTAATTAGGTCAGTCAG 59.358 40.000 0.00 0.00 0.00 3.51
870 871 5.410439 GTCCGCTTTTTAATTAGGTCAGTCA 59.590 40.000 0.00 0.00 0.00 3.41
871 872 5.445540 CGTCCGCTTTTTAATTAGGTCAGTC 60.446 44.000 0.00 0.00 0.00 3.51
872 873 4.390909 CGTCCGCTTTTTAATTAGGTCAGT 59.609 41.667 0.00 0.00 0.00 3.41
873 874 4.726876 GCGTCCGCTTTTTAATTAGGTCAG 60.727 45.833 4.10 0.00 38.26 3.51
874 875 3.125658 GCGTCCGCTTTTTAATTAGGTCA 59.874 43.478 4.10 0.00 38.26 4.02
875 876 3.677601 GCGTCCGCTTTTTAATTAGGTC 58.322 45.455 4.10 0.00 38.26 3.85
876 877 2.094734 CGCGTCCGCTTTTTAATTAGGT 59.905 45.455 10.21 0.00 39.32 3.08
877 878 2.538132 CCGCGTCCGCTTTTTAATTAGG 60.538 50.000 4.92 0.00 39.32 2.69
878 879 2.349275 TCCGCGTCCGCTTTTTAATTAG 59.651 45.455 4.92 0.00 39.32 1.73
879 880 2.094099 GTCCGCGTCCGCTTTTTAATTA 59.906 45.455 4.92 0.00 39.32 1.40
880 881 1.135888 GTCCGCGTCCGCTTTTTAATT 60.136 47.619 4.92 0.00 39.32 1.40
881 882 0.445043 GTCCGCGTCCGCTTTTTAAT 59.555 50.000 4.92 0.00 39.32 1.40
882 883 1.861440 GTCCGCGTCCGCTTTTTAA 59.139 52.632 4.92 0.00 39.32 1.52
883 884 2.374226 CGTCCGCGTCCGCTTTTTA 61.374 57.895 4.92 0.00 39.32 1.52
884 885 3.708734 CGTCCGCGTCCGCTTTTT 61.709 61.111 4.92 0.00 39.32 1.94
903 904 4.025229 TGTTTATTTGTATCGCTCATCCGC 60.025 41.667 0.00 0.00 0.00 5.54
904 905 5.651172 TGTTTATTTGTATCGCTCATCCG 57.349 39.130 0.00 0.00 0.00 4.18
905 906 8.682128 TTTTTGTTTATTTGTATCGCTCATCC 57.318 30.769 0.00 0.00 0.00 3.51
928 929 4.334481 ACAGACTCGATTTTGTCCGTTTTT 59.666 37.500 0.00 0.00 34.02 1.94
929 930 3.875134 ACAGACTCGATTTTGTCCGTTTT 59.125 39.130 0.00 0.00 34.02 2.43
930 931 3.463944 ACAGACTCGATTTTGTCCGTTT 58.536 40.909 0.00 0.00 34.02 3.60
931 932 3.057734 GACAGACTCGATTTTGTCCGTT 58.942 45.455 13.53 0.00 35.15 4.44
932 933 2.296471 AGACAGACTCGATTTTGTCCGT 59.704 45.455 18.86 6.91 40.53 4.69
933 934 2.663602 CAGACAGACTCGATTTTGTCCG 59.336 50.000 18.86 8.58 40.53 4.79
934 935 2.996621 CCAGACAGACTCGATTTTGTCC 59.003 50.000 18.86 5.64 40.53 4.02
935 936 2.996621 CCCAGACAGACTCGATTTTGTC 59.003 50.000 15.91 15.91 40.08 3.18
936 937 2.368875 ACCCAGACAGACTCGATTTTGT 59.631 45.455 0.00 0.00 0.00 2.83
937 938 2.996621 GACCCAGACAGACTCGATTTTG 59.003 50.000 0.00 0.00 0.00 2.44
938 939 2.352814 CGACCCAGACAGACTCGATTTT 60.353 50.000 0.00 0.00 0.00 1.82
939 940 1.202582 CGACCCAGACAGACTCGATTT 59.797 52.381 0.00 0.00 0.00 2.17
940 941 0.811915 CGACCCAGACAGACTCGATT 59.188 55.000 0.00 0.00 0.00 3.34
941 942 1.032657 CCGACCCAGACAGACTCGAT 61.033 60.000 0.00 0.00 0.00 3.59
942 943 1.674651 CCGACCCAGACAGACTCGA 60.675 63.158 0.00 0.00 0.00 4.04
943 944 2.878429 CCGACCCAGACAGACTCG 59.122 66.667 0.00 0.00 0.00 4.18
944 945 1.939769 GAGCCGACCCAGACAGACTC 61.940 65.000 0.00 0.00 0.00 3.36
945 946 1.979693 GAGCCGACCCAGACAGACT 60.980 63.158 0.00 0.00 0.00 3.24
946 947 2.574399 GAGCCGACCCAGACAGAC 59.426 66.667 0.00 0.00 0.00 3.51
947 948 3.062466 CGAGCCGACCCAGACAGA 61.062 66.667 0.00 0.00 0.00 3.41
948 949 2.932234 AACGAGCCGACCCAGACAG 61.932 63.158 1.50 0.00 0.00 3.51
949 950 2.915659 AACGAGCCGACCCAGACA 60.916 61.111 1.50 0.00 0.00 3.41
950 951 2.432628 CAACGAGCCGACCCAGAC 60.433 66.667 1.50 0.00 0.00 3.51
951 952 3.691342 CCAACGAGCCGACCCAGA 61.691 66.667 1.50 0.00 0.00 3.86
952 953 3.649277 CTCCAACGAGCCGACCCAG 62.649 68.421 1.50 0.00 0.00 4.45
953 954 3.691342 CTCCAACGAGCCGACCCA 61.691 66.667 1.50 0.00 0.00 4.51
954 955 3.236003 AACTCCAACGAGCCGACCC 62.236 63.158 1.50 0.00 40.03 4.46
955 956 2.027625 CAACTCCAACGAGCCGACC 61.028 63.158 1.50 0.00 40.03 4.79
956 957 2.668280 GCAACTCCAACGAGCCGAC 61.668 63.158 1.50 0.00 40.03 4.79
957 958 2.357034 GCAACTCCAACGAGCCGA 60.357 61.111 1.50 0.00 40.03 5.54
958 959 2.357517 AGCAACTCCAACGAGCCG 60.358 61.111 0.00 0.00 40.03 5.52
959 960 0.603975 AAGAGCAACTCCAACGAGCC 60.604 55.000 0.00 0.00 40.03 4.70
960 961 2.080286 TAAGAGCAACTCCAACGAGC 57.920 50.000 0.00 0.00 40.03 5.03
961 962 3.619038 GGAATAAGAGCAACTCCAACGAG 59.381 47.826 0.00 0.00 42.32 4.18
962 963 3.260884 AGGAATAAGAGCAACTCCAACGA 59.739 43.478 0.00 0.00 0.00 3.85
963 964 3.600388 AGGAATAAGAGCAACTCCAACG 58.400 45.455 0.00 0.00 0.00 4.10
964 965 4.393371 GTGAGGAATAAGAGCAACTCCAAC 59.607 45.833 0.00 0.00 0.00 3.77
965 966 4.579869 GTGAGGAATAAGAGCAACTCCAA 58.420 43.478 0.00 0.00 0.00 3.53
966 967 3.368427 CGTGAGGAATAAGAGCAACTCCA 60.368 47.826 0.00 0.00 0.00 3.86
967 968 3.190874 CGTGAGGAATAAGAGCAACTCC 58.809 50.000 0.00 0.00 0.00 3.85
968 969 2.605366 GCGTGAGGAATAAGAGCAACTC 59.395 50.000 0.00 0.00 0.00 3.01
969 970 2.622436 GCGTGAGGAATAAGAGCAACT 58.378 47.619 0.00 0.00 0.00 3.16
970 971 1.324736 CGCGTGAGGAATAAGAGCAAC 59.675 52.381 0.00 0.00 0.00 4.17
971 972 1.640428 CGCGTGAGGAATAAGAGCAA 58.360 50.000 0.00 0.00 0.00 3.91
972 973 0.179111 CCGCGTGAGGAATAAGAGCA 60.179 55.000 4.92 0.00 0.00 4.26
973 974 0.102481 TCCGCGTGAGGAATAAGAGC 59.898 55.000 4.92 0.00 37.36 4.09
974 975 2.034685 TGATCCGCGTGAGGAATAAGAG 59.965 50.000 4.92 0.00 44.50 2.85
975 976 2.028876 TGATCCGCGTGAGGAATAAGA 58.971 47.619 4.92 0.00 44.50 2.10
976 977 2.128035 GTGATCCGCGTGAGGAATAAG 58.872 52.381 4.92 0.00 44.50 1.73
1013 1014 2.274232 TTCGCACCTACCGATGACCG 62.274 60.000 0.00 0.00 34.35 4.79
1034 1035 1.656818 ATGGTGCCCGAAGATTTGCG 61.657 55.000 0.00 0.00 0.00 4.85
1058 1059 2.048127 GACTTTGGAGGCGTCGCT 60.048 61.111 18.11 2.78 0.00 4.93
1260 1261 3.591835 GAGGAGAGCTCGCCGGAG 61.592 72.222 27.99 0.00 40.98 4.63
1460 1461 1.007734 TGCCGGAATCGAGCGATAC 60.008 57.895 5.05 2.09 39.00 2.24
1462 1463 1.452953 TAGTGCCGGAATCGAGCGAT 61.453 55.000 5.05 0.00 39.00 4.58
1513 1514 1.623542 GGCAACGACACCTCCCCTAT 61.624 60.000 0.00 0.00 0.00 2.57
1703 1704 2.774439 AAAAGCCAACAGTAAGTGCG 57.226 45.000 0.00 0.00 0.00 5.34
1737 1738 5.651576 TGTGATCAAAGCATATGCAAACCTA 59.348 36.000 28.62 9.81 45.16 3.08
1750 1751 5.120830 ACTTCGACTATTGTGTGATCAAAGC 59.879 40.000 0.00 0.00 0.00 3.51
1758 1759 5.048153 TCTCTGACTTCGACTATTGTGTG 57.952 43.478 0.00 0.00 0.00 3.82
1767 1768 3.502191 AGCTTCATCTCTGACTTCGAC 57.498 47.619 0.00 0.00 0.00 4.20
1773 1774 7.865385 AGTATCGAAAATAGCTTCATCTCTGAC 59.135 37.037 0.00 0.00 0.00 3.51
1791 1792 6.257411 CGACTAAGTGACTTCCTAGTATCGAA 59.743 42.308 0.00 0.00 33.84 3.71
1792 1793 5.752472 CGACTAAGTGACTTCCTAGTATCGA 59.248 44.000 0.00 0.00 33.84 3.59
1793 1794 5.523188 ACGACTAAGTGACTTCCTAGTATCG 59.477 44.000 0.00 3.95 33.84 2.92
1794 1795 6.923928 ACGACTAAGTGACTTCCTAGTATC 57.076 41.667 0.00 0.00 33.84 2.24
1795 1796 7.111466 AGAACGACTAAGTGACTTCCTAGTAT 58.889 38.462 0.00 0.00 33.84 2.12
1796 1797 6.471146 AGAACGACTAAGTGACTTCCTAGTA 58.529 40.000 0.00 0.00 33.84 1.82
1797 1798 5.315348 AGAACGACTAAGTGACTTCCTAGT 58.685 41.667 0.00 0.00 37.31 2.57
1798 1799 5.883503 AGAACGACTAAGTGACTTCCTAG 57.116 43.478 0.00 0.00 0.00 3.02
1799 1800 6.705302 TCTAGAACGACTAAGTGACTTCCTA 58.295 40.000 0.00 0.00 0.00 2.94
1800 1801 5.558818 TCTAGAACGACTAAGTGACTTCCT 58.441 41.667 0.00 0.00 0.00 3.36
1801 1802 5.412286 ACTCTAGAACGACTAAGTGACTTCC 59.588 44.000 0.00 0.00 0.00 3.46
1804 1805 7.976135 TTTACTCTAGAACGACTAAGTGACT 57.024 36.000 0.00 0.00 0.00 3.41
1828 1829 5.884232 TCTGCATTGCTCATCTGAACTTAAT 59.116 36.000 10.49 0.00 0.00 1.40
1830 1831 4.633126 GTCTGCATTGCTCATCTGAACTTA 59.367 41.667 10.49 0.00 0.00 2.24
1837 1838 5.057819 CAGATAAGTCTGCATTGCTCATCT 58.942 41.667 10.49 5.95 44.86 2.90
1880 1881 8.691797 GGCTCAAACCAAATATACCATAAAAGA 58.308 33.333 0.00 0.00 0.00 2.52
1881 1882 7.926018 GGGCTCAAACCAAATATACCATAAAAG 59.074 37.037 0.00 0.00 0.00 2.27
1882 1883 7.400339 TGGGCTCAAACCAAATATACCATAAAA 59.600 33.333 0.00 0.00 34.44 1.52
1886 1887 4.877773 TGGGCTCAAACCAAATATACCAT 58.122 39.130 0.00 0.00 34.44 3.55
1887 1888 4.323569 TGGGCTCAAACCAAATATACCA 57.676 40.909 0.00 0.00 34.44 3.25
1937 1939 9.535878 CAAGCTAAACCTTAACCAACATTTTAA 57.464 29.630 0.00 0.00 0.00 1.52
1938 1940 7.654116 GCAAGCTAAACCTTAACCAACATTTTA 59.346 33.333 0.00 0.00 0.00 1.52
1944 1946 3.610821 CGGCAAGCTAAACCTTAACCAAC 60.611 47.826 0.00 0.00 0.00 3.77
1950 1952 3.620427 TCATCGGCAAGCTAAACCTTA 57.380 42.857 0.00 0.00 0.00 2.69
1966 1968 6.038714 CCTTGCCTACCTTTGACTAATTCATC 59.961 42.308 0.00 0.00 32.84 2.92
2040 2043 5.665916 ATTGATCTTTGTTTGGATGGGTC 57.334 39.130 0.00 0.00 0.00 4.46
2065 2068 3.379372 CCAGCTATTTGACCATGACCAAG 59.621 47.826 0.00 0.00 0.00 3.61
2075 2078 3.198853 AGAGTTCCTCCCAGCTATTTGAC 59.801 47.826 0.00 0.00 0.00 3.18
2081 2084 0.978146 GGCAGAGTTCCTCCCAGCTA 60.978 60.000 0.00 0.00 0.00 3.32
2082 2085 2.297129 GGCAGAGTTCCTCCCAGCT 61.297 63.158 0.00 0.00 0.00 4.24
2083 2086 0.978146 TAGGCAGAGTTCCTCCCAGC 60.978 60.000 0.00 0.00 35.21 4.85
2084 2087 1.415659 CATAGGCAGAGTTCCTCCCAG 59.584 57.143 0.00 0.00 35.21 4.45
2085 2088 1.273838 ACATAGGCAGAGTTCCTCCCA 60.274 52.381 0.00 0.00 35.21 4.37
2086 2089 1.501582 ACATAGGCAGAGTTCCTCCC 58.498 55.000 0.00 0.00 35.21 4.30
2090 2093 3.055819 TGAGACAACATAGGCAGAGTTCC 60.056 47.826 0.00 0.00 0.00 3.62
2403 2406 2.029918 GCGAAGACCCTTGCTCATTTTT 60.030 45.455 0.00 0.00 0.00 1.94
2519 2522 0.531532 CTGCATCAACTAGCTCCCGG 60.532 60.000 0.00 0.00 0.00 5.73
2568 2571 4.044571 TCCTCTCCATTTGGTTTCTTGGAT 59.955 41.667 0.00 0.00 37.61 3.41
2926 2929 1.616091 CCCATGCGCCCCTTCAAAAT 61.616 55.000 4.18 0.00 0.00 1.82
3106 3109 2.099921 GCACGCCTATCTTCTCTTCTCA 59.900 50.000 0.00 0.00 0.00 3.27
3369 3372 1.987855 CCTCCGAGGCCACCTTACA 60.988 63.158 5.01 0.00 31.76 2.41
3403 3406 1.573108 ATCTTCGCTTCTCCTTCCCA 58.427 50.000 0.00 0.00 0.00 4.37
3751 3873 2.240279 ACAGCTTGTCGAAGTACTCCT 58.760 47.619 0.00 0.00 0.00 3.69
3942 4064 1.991121 ACTATCGCTATGTCCCCGAA 58.009 50.000 0.00 0.00 34.42 4.30
4035 4157 5.264395 CCCCTTGTTCTTGAAGATTGGTAT 58.736 41.667 0.00 0.00 0.00 2.73
4256 4379 4.406456 TGAACACCATATGCAAGTCCTTT 58.594 39.130 0.00 0.00 0.00 3.11
4281 4404 5.667626 TCTTATCATAGGCCTTCTCCAAGTT 59.332 40.000 12.58 0.00 0.00 2.66
4310 4433 0.322456 CCCACCACATGACATTCCGT 60.322 55.000 0.00 0.00 0.00 4.69
4629 4754 3.345508 ACTAAGCCTAAACCCTTTCGG 57.654 47.619 0.00 0.00 37.81 4.30
4690 4815 2.715763 AACCTCCTCCTCACACCTAA 57.284 50.000 0.00 0.00 0.00 2.69
4915 5044 3.266636 CACTCCGTGCCATACAACATTA 58.733 45.455 0.00 0.00 0.00 1.90
4965 5094 1.754803 CATCTCCGCCACACCTAACTA 59.245 52.381 0.00 0.00 0.00 2.24
5045 5174 0.680061 CTACCCCAACCCTATCTCGC 59.320 60.000 0.00 0.00 0.00 5.03
5054 5183 0.894835 CAATTGGTGCTACCCCAACC 59.105 55.000 0.00 0.00 44.36 3.77
5078 5207 2.549754 CAGACGATGTTGGACAAGCTTT 59.450 45.455 0.00 0.00 0.00 3.51
5121 5250 0.978146 GGAGCTTCTGGAGGCCTACA 60.978 60.000 19.22 19.22 33.44 2.74
5123 5252 0.689080 CTGGAGCTTCTGGAGGCCTA 60.689 60.000 4.42 0.00 33.44 3.93
5408 5539 2.840511 TGTACCCTCCCAGCTATTTGA 58.159 47.619 0.00 0.00 0.00 2.69
5409 5540 3.864789 ATGTACCCTCCCAGCTATTTG 57.135 47.619 0.00 0.00 0.00 2.32
5410 5541 4.881157 AAATGTACCCTCCCAGCTATTT 57.119 40.909 0.00 0.00 0.00 1.40
5411 5542 4.536765 CAAAATGTACCCTCCCAGCTATT 58.463 43.478 0.00 0.00 0.00 1.73
5412 5543 3.117512 CCAAAATGTACCCTCCCAGCTAT 60.118 47.826 0.00 0.00 0.00 2.97
5413 5544 2.241176 CCAAAATGTACCCTCCCAGCTA 59.759 50.000 0.00 0.00 0.00 3.32
5416 5547 1.474330 GCCAAAATGTACCCTCCCAG 58.526 55.000 0.00 0.00 0.00 4.45
5427 5558 9.643693 GATAATATTTAGATGGTGGCCAAAATG 57.356 33.333 7.24 0.00 36.95 2.32
5461 5592 8.226810 TCCATCCAACTAACCATTCAATATGAT 58.773 33.333 0.00 0.00 0.00 2.45
5529 5660 6.039717 CCATCCCACTAATTACATCCAACAAG 59.960 42.308 0.00 0.00 0.00 3.16
5642 5795 1.375140 ACCGCATGCTGTCTGTCAG 60.375 57.895 17.13 0.00 46.12 3.51
5651 5804 3.255642 ACAAAATAAGAACACCGCATGCT 59.744 39.130 17.13 0.00 0.00 3.79
5657 5810 7.534085 TGCTATAGACAAAATAAGAACACCG 57.466 36.000 3.21 0.00 0.00 4.94
5659 5812 7.974675 TGCTGCTATAGACAAAATAAGAACAC 58.025 34.615 3.21 0.00 0.00 3.32
5691 5845 7.535139 GCCATACTGCTTTCTAACATACAAAA 58.465 34.615 0.00 0.00 0.00 2.44
5695 5849 4.809426 ACGCCATACTGCTTTCTAACATAC 59.191 41.667 0.00 0.00 0.00 2.39
5696 5850 4.808895 CACGCCATACTGCTTTCTAACATA 59.191 41.667 0.00 0.00 0.00 2.29
5697 5851 3.623060 CACGCCATACTGCTTTCTAACAT 59.377 43.478 0.00 0.00 0.00 2.71
5706 5892 1.078214 ACATGCACGCCATACTGCT 60.078 52.632 0.00 0.00 34.29 4.24
5769 5956 8.599774 GCAGATTACTGTTTATCTCTTTGACTC 58.400 37.037 0.00 0.00 45.04 3.36
5770 5957 8.317679 AGCAGATTACTGTTTATCTCTTTGACT 58.682 33.333 0.00 0.00 45.04 3.41
5771 5958 8.485976 AGCAGATTACTGTTTATCTCTTTGAC 57.514 34.615 0.00 0.00 45.04 3.18
5772 5959 8.939929 CAAGCAGATTACTGTTTATCTCTTTGA 58.060 33.333 13.42 0.00 43.63 2.69
5773 5960 8.725148 ACAAGCAGATTACTGTTTATCTCTTTG 58.275 33.333 15.15 15.15 43.63 2.77
5774 5961 8.854614 ACAAGCAGATTACTGTTTATCTCTTT 57.145 30.769 0.00 0.16 43.63 2.52
5775 5962 8.854614 AACAAGCAGATTACTGTTTATCTCTT 57.145 30.769 0.00 6.74 43.63 2.85
5776 5963 9.944376 TTAACAAGCAGATTACTGTTTATCTCT 57.056 29.630 0.00 2.52 43.63 3.10
5955 6142 7.119846 GCATTATTAGTACAGGAAAGGGCATAG 59.880 40.741 0.00 0.00 0.00 2.23
5960 6147 5.765182 CCAGCATTATTAGTACAGGAAAGGG 59.235 44.000 0.00 0.00 0.00 3.95
6294 6684 3.504375 AGAAGCTGAGCAAAGGGAAAAT 58.496 40.909 7.39 0.00 0.00 1.82
6307 6697 7.661437 ACTGTATTTGACAACATAAGAAGCTGA 59.339 33.333 0.00 0.00 37.70 4.26
6334 6724 8.623903 GTGAGAATTAACTGATGCAAATATCCA 58.376 33.333 0.00 0.00 0.00 3.41
6531 6921 2.611292 CGGAAGTTCAGAGAATGATGGC 59.389 50.000 5.01 0.00 37.89 4.40
6552 6942 6.056236 GGTGGGAATAGTTTCTGGTCTATTC 58.944 44.000 13.28 13.28 45.37 1.75
6566 6956 1.098050 GTGCTTGCTGGTGGGAATAG 58.902 55.000 0.00 0.00 0.00 1.73
6764 7654 5.788450 TGACTCTGAACTCAAAAGAGGATC 58.212 41.667 4.14 0.00 41.47 3.36
6894 7784 4.999939 GCAACCAAACAGGCCGCG 63.000 66.667 0.00 0.00 43.14 6.46
6900 7790 1.833934 AGCCCAGGCAACCAAACAG 60.834 57.895 12.03 0.00 44.88 3.16
6940 7830 2.106683 CGGGCTGCTTTAAGGTCCG 61.107 63.158 0.00 0.41 0.00 4.79
6942 7832 1.648467 CTGCGGGCTGCTTTAAGGTC 61.648 60.000 20.66 0.00 46.63 3.85
7062 7952 2.131709 TTATGAGACGCCCCCTCCG 61.132 63.158 0.00 0.00 0.00 4.63
7088 7978 0.393077 AACGGTGACAGAAGAGTGGG 59.607 55.000 0.00 0.00 0.00 4.61
7096 7986 1.007734 GCGACTGAACGGTGACAGA 60.008 57.895 17.98 0.00 37.54 3.41
7125 8015 1.107114 GTGAATGAGAGAGGGAGCGA 58.893 55.000 0.00 0.00 0.00 4.93
7139 8029 3.090532 GAGGGAGGGGCGGTGAAT 61.091 66.667 0.00 0.00 0.00 2.57
7140 8030 4.332543 AGAGGGAGGGGCGGTGAA 62.333 66.667 0.00 0.00 0.00 3.18
7221 8113 3.285215 CCTGGATGCTGGCGATGC 61.285 66.667 0.00 0.00 0.00 3.91
7222 8114 1.597302 CTCCTGGATGCTGGCGATG 60.597 63.158 5.18 0.00 0.00 3.84
7230 8122 2.894387 GTCAGCGCTCCTGGATGC 60.894 66.667 7.13 11.86 42.05 3.91
7246 8138 2.038975 TTCTAGAGCCCGGCCAGT 59.961 61.111 5.55 0.00 0.00 4.00
7259 8151 2.360844 CAGGTCTCGCTCTGAGTTCTA 58.639 52.381 6.53 0.00 45.46 2.10
7267 8159 3.444805 GACGCCAGGTCTCGCTCT 61.445 66.667 0.00 0.00 42.62 4.09
7294 8186 3.461773 CAGATGGGGGACGACGCT 61.462 66.667 0.00 0.00 0.00 5.07
7298 8190 2.668632 GCAACAGATGGGGGACGA 59.331 61.111 0.00 0.00 0.00 4.20
7337 8229 2.508439 GAATCCGCGACGCAGGAA 60.508 61.111 28.06 16.54 35.66 3.36
7349 8244 3.832846 AATGGGGCCCCGGAATCC 61.833 66.667 36.00 10.95 39.42 3.01
7376 8271 0.892358 GGACGGGGGTCAAGAAAACC 60.892 60.000 0.00 0.00 35.97 3.27
7377 8272 0.179012 TGGACGGGGGTCAAGAAAAC 60.179 55.000 0.00 0.00 0.00 2.43
7378 8273 0.551879 TTGGACGGGGGTCAAGAAAA 59.448 50.000 0.00 0.00 0.00 2.29
7379 8274 0.109723 CTTGGACGGGGGTCAAGAAA 59.890 55.000 0.00 0.00 39.97 2.52
7380 8275 1.758592 CTTGGACGGGGGTCAAGAA 59.241 57.895 0.00 0.00 39.97 2.52
7381 8276 2.221299 CCTTGGACGGGGGTCAAGA 61.221 63.158 0.00 0.00 39.97 3.02
7382 8277 2.351276 CCTTGGACGGGGGTCAAG 59.649 66.667 0.00 0.00 38.01 3.02
7383 8278 3.253838 CCCTTGGACGGGGGTCAA 61.254 66.667 0.00 0.00 40.75 3.18
7390 8285 0.400594 AGGAGAAAACCCTTGGACGG 59.599 55.000 0.00 0.00 0.00 4.79
7391 8286 1.202770 ACAGGAGAAAACCCTTGGACG 60.203 52.381 0.00 0.00 0.00 4.79
7392 8287 2.505405 GACAGGAGAAAACCCTTGGAC 58.495 52.381 0.00 0.00 0.00 4.02
7393 8288 1.071699 CGACAGGAGAAAACCCTTGGA 59.928 52.381 0.00 0.00 0.00 3.53
7394 8289 1.523758 CGACAGGAGAAAACCCTTGG 58.476 55.000 0.00 0.00 0.00 3.61
7395 8290 1.523758 CCGACAGGAGAAAACCCTTG 58.476 55.000 0.00 0.00 41.02 3.61
7396 8291 0.250770 GCCGACAGGAGAAAACCCTT 60.251 55.000 0.00 0.00 41.02 3.95
7397 8292 1.375326 GCCGACAGGAGAAAACCCT 59.625 57.895 0.00 0.00 41.02 4.34
7398 8293 0.955919 CTGCCGACAGGAGAAAACCC 60.956 60.000 0.00 0.00 40.48 4.11
7399 8294 2.544726 CTGCCGACAGGAGAAAACC 58.455 57.895 0.00 0.00 40.48 3.27
7418 8313 3.519930 GAGGTCGAGGAGGACGGC 61.520 72.222 0.00 0.00 37.82 5.68
7419 8314 2.829458 GGAGGTCGAGGAGGACGG 60.829 72.222 0.00 0.00 37.82 4.79
7420 8315 3.203412 CGGAGGTCGAGGAGGACG 61.203 72.222 0.00 0.00 42.43 4.79
7445 8340 4.241555 ATCGGCCCCGTGCTCATC 62.242 66.667 6.61 0.00 40.92 2.92
7446 8341 4.552365 CATCGGCCCCGTGCTCAT 62.552 66.667 6.61 0.00 40.92 2.90
7467 8362 2.825836 GACCCTGGCGATGGCTTG 60.826 66.667 0.00 0.00 39.81 4.01
7468 8363 4.473520 CGACCCTGGCGATGGCTT 62.474 66.667 0.00 0.00 39.81 4.35
7477 8372 4.787280 AGGAGGAGCCGACCCTGG 62.787 72.222 0.00 0.00 43.43 4.45
7478 8373 3.151022 GAGGAGGAGCCGACCCTG 61.151 72.222 0.00 0.00 43.43 4.45
7479 8374 3.351885 AGAGGAGGAGCCGACCCT 61.352 66.667 0.00 0.00 43.43 4.34
7480 8375 3.151022 CAGAGGAGGAGCCGACCC 61.151 72.222 0.00 0.00 43.43 4.46
7481 8376 3.844090 GCAGAGGAGGAGCCGACC 61.844 72.222 0.00 0.00 43.43 4.79
7482 8377 2.757917 AGCAGAGGAGGAGCCGAC 60.758 66.667 0.00 0.00 43.43 4.79
7483 8378 2.441164 GAGCAGAGGAGGAGCCGA 60.441 66.667 0.00 0.00 43.43 5.54
7484 8379 3.535962 GGAGCAGAGGAGGAGCCG 61.536 72.222 0.00 0.00 43.43 5.52
7485 8380 3.535962 CGGAGCAGAGGAGGAGCC 61.536 72.222 0.00 0.00 0.00 4.70
7498 8393 1.671901 GAAGGAGAGAGGTGGCGGAG 61.672 65.000 0.00 0.00 0.00 4.63
7499 8394 1.682684 GAAGGAGAGAGGTGGCGGA 60.683 63.158 0.00 0.00 0.00 5.54
7500 8395 2.726351 GGAAGGAGAGAGGTGGCGG 61.726 68.421 0.00 0.00 0.00 6.13
7501 8396 2.726351 GGGAAGGAGAGAGGTGGCG 61.726 68.421 0.00 0.00 0.00 5.69
7502 8397 1.613630 TGGGAAGGAGAGAGGTGGC 60.614 63.158 0.00 0.00 0.00 5.01
7503 8398 1.268283 GGTGGGAAGGAGAGAGGTGG 61.268 65.000 0.00 0.00 0.00 4.61
7504 8399 1.608717 CGGTGGGAAGGAGAGAGGTG 61.609 65.000 0.00 0.00 0.00 4.00
7505 8400 1.305381 CGGTGGGAAGGAGAGAGGT 60.305 63.158 0.00 0.00 0.00 3.85
7506 8401 2.060980 CCGGTGGGAAGGAGAGAGG 61.061 68.421 0.00 0.00 34.06 3.69
7507 8402 3.622514 CCGGTGGGAAGGAGAGAG 58.377 66.667 0.00 0.00 34.06 3.20
7518 8413 2.599281 GGGTGAAAACCCCGGTGG 60.599 66.667 0.00 3.72 44.18 4.61
7525 8420 2.675423 GAGGCCGGGGTGAAAACC 60.675 66.667 2.18 0.00 0.00 3.27
7526 8421 3.053896 CGAGGCCGGGGTGAAAAC 61.054 66.667 2.18 0.00 0.00 2.43
7537 8432 3.818787 TCGTAGCGAACCGAGGCC 61.819 66.667 0.00 0.00 31.06 5.19
7538 8433 2.539263 AAGTCGTAGCGAACCGAGGC 62.539 60.000 0.00 0.00 37.72 4.70
7539 8434 0.522915 GAAGTCGTAGCGAACCGAGG 60.523 60.000 0.00 0.00 37.72 4.63
7540 8435 0.167470 TGAAGTCGTAGCGAACCGAG 59.833 55.000 0.00 0.00 37.72 4.63
7541 8436 0.110056 GTGAAGTCGTAGCGAACCGA 60.110 55.000 0.00 0.00 37.72 4.69
7542 8437 1.393597 CGTGAAGTCGTAGCGAACCG 61.394 60.000 0.00 0.00 37.72 4.44
7543 8438 0.386478 ACGTGAAGTCGTAGCGAACC 60.386 55.000 0.00 0.00 42.35 3.62
7544 8439 0.701303 CACGTGAAGTCGTAGCGAAC 59.299 55.000 10.90 0.00 42.27 3.95
7545 8440 1.000233 GCACGTGAAGTCGTAGCGAA 61.000 55.000 22.23 0.00 42.27 4.70
7546 8441 1.441515 GCACGTGAAGTCGTAGCGA 60.442 57.895 22.23 0.00 42.27 4.93
7547 8442 1.396543 GAGCACGTGAAGTCGTAGCG 61.397 60.000 22.23 0.00 42.27 4.26
7548 8443 1.071567 GGAGCACGTGAAGTCGTAGC 61.072 60.000 22.23 0.00 42.27 3.58
7549 8444 0.793478 CGGAGCACGTGAAGTCGTAG 60.793 60.000 22.23 3.93 42.27 3.51
7550 8445 1.208358 CGGAGCACGTGAAGTCGTA 59.792 57.895 22.23 0.00 42.27 3.43
7551 8446 2.050351 CGGAGCACGTGAAGTCGT 60.050 61.111 22.23 0.00 45.10 4.34
7552 8447 2.805353 CCGGAGCACGTGAAGTCG 60.805 66.667 22.23 15.79 42.24 4.18
7553 8448 2.022129 CACCGGAGCACGTGAAGTC 61.022 63.158 22.23 11.97 42.24 3.01
7554 8449 2.029073 CACCGGAGCACGTGAAGT 59.971 61.111 22.23 1.79 42.24 3.01
7555 8450 1.734477 CTCACCGGAGCACGTGAAG 60.734 63.158 22.23 6.38 42.24 3.02
7556 8451 2.338620 CTCACCGGAGCACGTGAA 59.661 61.111 22.23 0.00 42.24 3.18
7557 8452 2.910479 ACTCACCGGAGCACGTGA 60.910 61.111 22.23 0.00 45.42 4.35
7558 8453 2.430921 GACTCACCGGAGCACGTG 60.431 66.667 9.46 12.28 45.42 4.49
7559 8454 2.023414 TTTGACTCACCGGAGCACGT 62.023 55.000 9.46 0.00 45.42 4.49
7560 8455 1.300620 TTTGACTCACCGGAGCACG 60.301 57.895 9.46 0.00 45.42 5.34
7561 8456 0.249911 AGTTTGACTCACCGGAGCAC 60.250 55.000 9.46 0.00 45.42 4.40
7562 8457 0.033504 GAGTTTGACTCACCGGAGCA 59.966 55.000 9.46 0.00 44.45 4.26
7563 8458 0.670854 GGAGTTTGACTCACCGGAGC 60.671 60.000 9.46 0.00 46.79 4.70
7564 8459 0.037232 GGGAGTTTGACTCACCGGAG 60.037 60.000 9.46 0.00 46.79 4.63
7565 8460 2.055299 GGGAGTTTGACTCACCGGA 58.945 57.895 9.46 0.00 46.79 5.14
7566 8461 4.695560 GGGAGTTTGACTCACCGG 57.304 61.111 0.00 0.00 46.79 5.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.