Multiple sequence alignment - TraesCS3A01G109300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G109300 chr3A 100.000 5329 0 0 1 5329 75405082 75410410 0.000000e+00 9841.0
1 TraesCS3A01G109300 chr3A 95.506 89 4 0 2887 2975 22230633 22230721 5.560000e-30 143.0
2 TraesCS3A01G109300 chr3A 82.877 146 17 5 4277 4416 75442341 75442484 2.020000e-24 124.0
3 TraesCS3A01G109300 chr3A 85.393 89 10 2 5125 5210 75452239 75452327 7.350000e-14 89.8
4 TraesCS3A01G109300 chr3B 93.720 2325 111 21 2972 5279 107665251 107667557 0.000000e+00 3452.0
5 TraesCS3A01G109300 chr3B 89.040 2062 104 45 805 2828 107663165 107665142 0.000000e+00 2444.0
6 TraesCS3A01G109300 chr3B 100.000 32 0 0 3413 3444 630401416 630401385 5.760000e-05 60.2
7 TraesCS3A01G109300 chr3D 95.690 1717 56 12 2972 4673 64644141 64645854 0.000000e+00 2745.0
8 TraesCS3A01G109300 chr3D 89.706 2040 81 51 805 2828 64642106 64644032 0.000000e+00 2484.0
9 TraesCS3A01G109300 chr3D 87.500 808 89 10 2 804 64641230 64642030 0.000000e+00 922.0
10 TraesCS3A01G109300 chr3D 95.041 121 5 1 4672 4791 64645936 64646056 7.050000e-44 189.0
11 TraesCS3A01G109300 chr3D 77.451 102 23 0 3341 3442 62329662 62329763 1.600000e-05 62.1
12 TraesCS3A01G109300 chr3D 89.362 47 5 0 3401 3447 23173652 23173606 5.760000e-05 60.2
13 TraesCS3A01G109300 chr2A 97.701 87 2 0 2889 2975 539325662 539325576 3.320000e-32 150.0
14 TraesCS3A01G109300 chr7A 97.674 86 2 0 2889 2974 581850992 581850907 1.200000e-31 148.0
15 TraesCS3A01G109300 chr7A 89.524 105 7 4 2884 2986 48290716 48290614 4.330000e-26 130.0
16 TraesCS3A01G109300 chr1A 97.674 86 2 0 2889 2974 209362154 209362069 1.200000e-31 148.0
17 TraesCS3A01G109300 chr1A 93.443 61 4 0 1209 1269 388156902 388156962 2.040000e-14 91.6
18 TraesCS3A01G109300 chr5D 97.647 85 2 0 2889 2973 532592544 532592460 4.300000e-31 147.0
19 TraesCS3A01G109300 chr5D 96.552 87 3 0 2889 2975 446918255 446918169 1.550000e-30 145.0
20 TraesCS3A01G109300 chr2B 93.684 95 6 0 2889 2983 28631620 28631526 5.560000e-30 143.0
21 TraesCS3A01G109300 chr5B 94.565 92 4 1 2882 2973 246182715 246182625 2.000000e-29 141.0
22 TraesCS3A01G109300 chr5B 90.476 42 4 0 3401 3442 443698272 443698313 7.460000e-04 56.5
23 TraesCS3A01G109300 chr1B 93.443 61 4 0 1209 1269 418669413 418669473 2.040000e-14 91.6
24 TraesCS3A01G109300 chr1D 73.718 156 37 3 3289 3442 308262071 308262224 2.070000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G109300 chr3A 75405082 75410410 5328 False 9841 9841 100.00000 1 5329 1 chr3A.!!$F2 5328
1 TraesCS3A01G109300 chr3B 107663165 107667557 4392 False 2948 3452 91.38000 805 5279 2 chr3B.!!$F1 4474
2 TraesCS3A01G109300 chr3D 64641230 64646056 4826 False 1585 2745 91.98425 2 4791 4 chr3D.!!$F2 4789

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
547 549 0.035439 ACGGAAGGTTGGCCATGTAG 60.035 55.000 6.09 0.0 37.19 2.74 F
984 1067 0.037326 TCATTTCGTCGCAAGGCTCT 60.037 50.000 0.00 0.0 42.28 4.09 F
1035 1118 0.104409 ATATCACCACCCCTCCCCTC 60.104 60.000 0.00 0.0 0.00 4.30 F
1974 2081 0.108615 AGGCACAGCATCTCGTGTAC 60.109 55.000 0.00 0.0 35.51 2.90 F
1975 2082 0.108615 GGCACAGCATCTCGTGTACT 60.109 55.000 0.00 0.0 35.51 2.73 F
2885 3070 0.338814 GGGAGACTTAGGGGGACTGA 59.661 60.000 0.00 0.0 0.00 3.41 F
2894 3079 0.563672 AGGGGGACTGAGATACTCCC 59.436 60.000 0.00 0.0 42.88 4.30 F
3872 4066 1.002087 CAGTTCCAGCGTTCTACCCTT 59.998 52.381 0.00 0.0 0.00 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1839 1940 0.103937 CTTTCCTCTCCTAGCTGCGG 59.896 60.000 0.0 0.0 0.00 5.69 R
2863 3048 0.338814 GTCCCCCTAAGTCTCCCTGA 59.661 60.000 0.0 0.0 0.00 3.86 R
2864 3049 0.340208 AGTCCCCCTAAGTCTCCCTG 59.660 60.000 0.0 0.0 0.00 4.45 R
3780 3974 0.323725 TGCTTCCAATGAAGGCCCTC 60.324 55.000 0.0 0.0 46.68 4.30 R
3829 4023 0.674895 AGACAGATGCGGCCTTGAAC 60.675 55.000 0.0 0.0 0.00 3.18 R
4051 4245 1.002011 AAGGGAAAGAGCGGAAGGC 60.002 57.895 0.0 0.0 44.05 4.35 R
4057 4251 2.003301 GTAAGCTGAAGGGAAAGAGCG 58.997 52.381 0.0 0.0 36.52 5.03 R
5210 5502 0.107654 GAAATGAGTCCCTGACCCGG 60.108 60.000 0.0 0.0 32.18 5.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 2.910199 TGACATATGCAACCTGAGAGC 58.090 47.619 1.58 0.00 0.00 4.09
32 33 3.273434 GACATATGCAACCTGAGAGCAA 58.727 45.455 1.58 0.00 42.15 3.91
36 37 2.057137 TGCAACCTGAGAGCAACTTT 57.943 45.000 0.00 0.00 34.97 2.66
38 39 3.550820 TGCAACCTGAGAGCAACTTTAA 58.449 40.909 0.00 0.00 34.97 1.52
62 63 3.713764 AGAGTCACCATATTAGCAGCCTT 59.286 43.478 0.00 0.00 0.00 4.35
117 118 1.202770 TGGAGGCTATCGACGAGATGA 60.203 52.381 3.01 0.00 40.40 2.92
119 120 0.878416 AGGCTATCGACGAGATGAGC 59.122 55.000 3.01 9.21 40.40 4.26
125 126 1.982612 TCGACGAGATGAGCAAAGTG 58.017 50.000 0.00 0.00 0.00 3.16
151 152 1.092921 GTCACGTGTGGCTTCCAACA 61.093 55.000 16.51 0.00 34.18 3.33
152 153 0.393132 TCACGTGTGGCTTCCAACAA 60.393 50.000 16.51 0.00 34.18 2.83
155 156 0.950836 CGTGTGGCTTCCAACAATGA 59.049 50.000 0.00 0.00 34.18 2.57
168 169 5.347342 TCCAACAATGACATGTGTTTTGAC 58.653 37.500 1.15 0.00 35.81 3.18
189 190 0.107214 TCCCAATTCGCCCACTCATC 60.107 55.000 0.00 0.00 0.00 2.92
242 243 1.664965 GCGCGTGACACTCCTCTTT 60.665 57.895 8.43 0.00 0.00 2.52
249 250 0.456995 GACACTCCTCTTTCTCGGCG 60.457 60.000 0.00 0.00 0.00 6.46
257 258 3.075005 TTTCTCGGCGAGGAGGGG 61.075 66.667 33.93 11.17 34.74 4.79
286 287 0.108615 CATGCGGTTCCTTCTCGACT 60.109 55.000 0.00 0.00 0.00 4.18
294 295 3.288964 GTTCCTTCTCGACTAGGATCCA 58.711 50.000 15.82 0.00 40.15 3.41
309 310 3.208692 AGGATCCACTTCTCCTCCTATGT 59.791 47.826 15.82 0.00 37.30 2.29
310 311 3.323403 GGATCCACTTCTCCTCCTATGTG 59.677 52.174 6.95 0.00 0.00 3.21
315 316 5.134509 TCCACTTCTCCTCCTATGTGATCTA 59.865 44.000 0.00 0.00 0.00 1.98
318 319 4.390129 TCTCCTCCTATGTGATCTACCC 57.610 50.000 0.00 0.00 0.00 3.69
327 328 3.974757 GATCTACCCGTCCGGCCG 61.975 72.222 21.04 21.04 33.26 6.13
338 339 4.222847 CCGGCCGTAGAGGAAGCC 62.223 72.222 26.12 0.00 45.00 4.35
340 341 3.459063 GGCCGTAGAGGAAGCCGT 61.459 66.667 0.00 0.00 45.00 5.68
341 342 2.202756 GCCGTAGAGGAAGCCGTG 60.203 66.667 0.00 0.00 45.00 4.94
377 378 2.992543 GAGCTAGATCATTCATGGCGAC 59.007 50.000 2.36 0.00 0.00 5.19
400 401 4.451900 GACCTTTTTATAGCTGCAGCCTA 58.548 43.478 34.39 24.28 43.38 3.93
421 422 2.597510 GCGGCAGGGAAAAGTGGT 60.598 61.111 0.00 0.00 0.00 4.16
461 463 4.738998 TGGGCAGTTGGGATGCGG 62.739 66.667 0.00 0.00 44.80 5.69
482 484 1.806247 CGGCCGTCATTCATTAGCTCA 60.806 52.381 19.50 0.00 0.00 4.26
490 492 4.574013 GTCATTCATTAGCTCACTTCCAGG 59.426 45.833 0.00 0.00 0.00 4.45
492 494 3.895232 TCATTAGCTCACTTCCAGGTC 57.105 47.619 0.00 0.00 0.00 3.85
494 496 3.582647 TCATTAGCTCACTTCCAGGTCAA 59.417 43.478 0.00 0.00 0.00 3.18
499 501 3.149196 GCTCACTTCCAGGTCAAATTGA 58.851 45.455 0.00 0.00 0.00 2.57
516 518 3.825833 GACGTCTAGCCATCCGCGG 62.826 68.421 22.12 22.12 44.76 6.46
525 527 2.186160 CCATCCGCGGCATTAGCAA 61.186 57.895 23.51 0.00 44.61 3.91
529 531 1.009675 CCGCGGCATTAGCAATGAC 60.010 57.895 14.67 8.36 43.70 3.06
535 537 1.334869 GGCATTAGCAATGACGGAAGG 59.665 52.381 11.52 0.00 44.61 3.46
547 549 0.035439 ACGGAAGGTTGGCCATGTAG 60.035 55.000 6.09 0.00 37.19 2.74
556 558 1.891933 TGGCCATGTAGGAGGATGAA 58.108 50.000 0.00 0.00 41.22 2.57
562 564 3.459598 CCATGTAGGAGGATGAAAAGGGA 59.540 47.826 0.00 0.00 41.22 4.20
563 565 4.455606 CATGTAGGAGGATGAAAAGGGAC 58.544 47.826 0.00 0.00 0.00 4.46
566 568 2.266279 AGGAGGATGAAAAGGGACGAA 58.734 47.619 0.00 0.00 0.00 3.85
578 580 3.551259 GGACGAATTCCCTTCTGCA 57.449 52.632 0.00 0.00 38.70 4.41
595 597 0.793861 GCACGAGCGGTTGACAATAA 59.206 50.000 9.28 0.00 0.00 1.40
599 601 1.202031 CGAGCGGTTGACAATAAAGCC 60.202 52.381 0.00 0.00 0.00 4.35
600 602 1.132453 GAGCGGTTGACAATAAAGCCC 59.868 52.381 0.00 0.00 0.00 5.19
634 636 3.686016 ACGCCTCACAACCTTCAAATAT 58.314 40.909 0.00 0.00 0.00 1.28
637 639 4.273480 CGCCTCACAACCTTCAAATATAGG 59.727 45.833 0.00 0.00 37.56 2.57
657 659 1.139520 GCTTGCCGGCTGTATTTGG 59.860 57.895 29.70 9.29 0.00 3.28
668 670 0.440758 TGTATTTGGAGCGCGTTTCG 59.559 50.000 8.43 0.00 42.12 3.46
677 679 2.363220 GAGCGCGTTTCGAAATTATGG 58.637 47.619 14.69 3.74 41.67 2.74
682 684 4.339429 CGCGTTTCGAAATTATGGTGATT 58.661 39.130 14.69 0.00 41.67 2.57
693 695 4.506255 GGTGATTGGGAGGGCGGG 62.506 72.222 0.00 0.00 0.00 6.13
709 711 2.584391 GGGGTGGCGACTCTTCTGT 61.584 63.158 0.00 0.00 0.00 3.41
713 715 0.601558 GTGGCGACTCTTCTGTACCA 59.398 55.000 0.00 0.00 0.00 3.25
718 723 3.751698 GGCGACTCTTCTGTACCATTTTT 59.248 43.478 0.00 0.00 0.00 1.94
751 756 5.321102 TGCTAAACCACTGGTCATTATGTT 58.679 37.500 0.00 0.00 33.12 2.71
756 761 4.191544 ACCACTGGTCATTATGTTGATCG 58.808 43.478 0.00 0.00 28.82 3.69
767 772 1.044611 TGTTGATCGGGCCGATATGA 58.955 50.000 38.89 24.58 47.00 2.15
770 775 1.176619 TGATCGGGCCGATATGACGT 61.177 55.000 38.89 18.90 47.00 4.34
771 776 0.456312 GATCGGGCCGATATGACGTC 60.456 60.000 38.89 23.07 47.00 4.34
775 780 0.039074 GGGCCGATATGACGTCTCAG 60.039 60.000 17.92 0.00 0.00 3.35
776 781 0.664767 GGCCGATATGACGTCTCAGC 60.665 60.000 17.92 9.84 0.00 4.26
777 782 0.664767 GCCGATATGACGTCTCAGCC 60.665 60.000 17.92 1.60 0.00 4.85
780 785 1.604278 CGATATGACGTCTCAGCCAGA 59.396 52.381 17.92 0.00 0.00 3.86
791 796 1.597854 CAGCCAGAGTTGCACCGAA 60.598 57.895 0.00 0.00 0.00 4.30
792 797 0.957395 CAGCCAGAGTTGCACCGAAT 60.957 55.000 0.00 0.00 0.00 3.34
794 799 1.926511 GCCAGAGTTGCACCGAATGG 61.927 60.000 0.00 0.00 42.84 3.16
795 800 0.321564 CCAGAGTTGCACCGAATGGA 60.322 55.000 0.00 0.00 39.21 3.41
796 801 1.081892 CAGAGTTGCACCGAATGGAG 58.918 55.000 0.00 0.00 39.21 3.86
797 802 0.687354 AGAGTTGCACCGAATGGAGT 59.313 50.000 0.00 0.00 39.21 3.85
798 803 1.079503 GAGTTGCACCGAATGGAGTC 58.920 55.000 0.00 0.00 39.21 3.36
799 804 0.687354 AGTTGCACCGAATGGAGTCT 59.313 50.000 0.00 0.00 39.21 3.24
800 805 0.798776 GTTGCACCGAATGGAGTCTG 59.201 55.000 0.00 0.00 39.21 3.51
801 806 0.955428 TTGCACCGAATGGAGTCTGC 60.955 55.000 0.00 0.00 39.21 4.26
802 807 2.456119 GCACCGAATGGAGTCTGCG 61.456 63.158 0.00 0.00 39.21 5.18
803 808 1.079819 CACCGAATGGAGTCTGCGT 60.080 57.895 0.00 0.00 39.21 5.24
884 963 1.320344 ACGCAAGCTCCTCGGATACA 61.320 55.000 7.06 0.00 45.62 2.29
885 964 0.596083 CGCAAGCTCCTCGGATACAG 60.596 60.000 0.00 0.00 0.00 2.74
887 966 0.249657 CAAGCTCCTCGGATACAGCC 60.250 60.000 0.00 0.00 32.56 4.85
975 1058 1.461888 GCCGTTCTTGTCATTTCGTCG 60.462 52.381 0.00 0.00 0.00 5.12
977 1060 1.191425 CGTTCTTGTCATTTCGTCGCA 59.809 47.619 0.00 0.00 0.00 5.10
981 1064 0.237235 TTGTCATTTCGTCGCAAGGC 59.763 50.000 0.00 0.00 39.81 4.35
982 1065 0.602638 TGTCATTTCGTCGCAAGGCT 60.603 50.000 0.00 0.00 42.28 4.58
983 1066 0.095417 GTCATTTCGTCGCAAGGCTC 59.905 55.000 0.00 0.00 42.28 4.70
984 1067 0.037326 TCATTTCGTCGCAAGGCTCT 60.037 50.000 0.00 0.00 42.28 4.09
1033 1116 1.231963 AAATATCACCACCCCTCCCC 58.768 55.000 0.00 0.00 0.00 4.81
1034 1117 0.350541 AATATCACCACCCCTCCCCT 59.649 55.000 0.00 0.00 0.00 4.79
1035 1118 0.104409 ATATCACCACCCCTCCCCTC 60.104 60.000 0.00 0.00 0.00 4.30
1036 1119 2.265890 TATCACCACCCCTCCCCTCC 62.266 65.000 0.00 0.00 0.00 4.30
1056 1139 1.699634 CCTCCGGAGAGAGAGAGAGAT 59.300 57.143 33.39 0.00 43.39 2.75
1061 1144 3.832490 CCGGAGAGAGAGAGAGATAGAGA 59.168 52.174 0.00 0.00 0.00 3.10
1066 1149 6.152661 GGAGAGAGAGAGAGATAGAGAGAGAG 59.847 50.000 0.00 0.00 0.00 3.20
1067 1150 6.857848 AGAGAGAGAGAGATAGAGAGAGAGA 58.142 44.000 0.00 0.00 0.00 3.10
1068 1151 6.947733 AGAGAGAGAGAGATAGAGAGAGAGAG 59.052 46.154 0.00 0.00 0.00 3.20
1069 1152 6.015918 AGAGAGAGAGATAGAGAGAGAGAGG 58.984 48.000 0.00 0.00 0.00 3.69
1070 1153 5.090139 AGAGAGAGATAGAGAGAGAGAGGG 58.910 50.000 0.00 0.00 0.00 4.30
1071 1154 5.087323 GAGAGAGATAGAGAGAGAGAGGGA 58.913 50.000 0.00 0.00 0.00 4.20
1072 1155 5.476983 AGAGAGATAGAGAGAGAGAGGGAA 58.523 45.833 0.00 0.00 0.00 3.97
1078 1161 0.933700 AGAGAGAGAGGGAAGGAGGG 59.066 60.000 0.00 0.00 0.00 4.30
1544 1645 0.396811 AGCGCAAGAAAGGTACCACT 59.603 50.000 15.94 7.55 43.02 4.00
1545 1646 1.621814 AGCGCAAGAAAGGTACCACTA 59.378 47.619 15.94 0.00 43.02 2.74
1546 1647 2.038033 AGCGCAAGAAAGGTACCACTAA 59.962 45.455 15.94 0.00 43.02 2.24
1547 1648 2.415512 GCGCAAGAAAGGTACCACTAAG 59.584 50.000 15.94 7.93 43.02 2.18
1548 1649 3.863400 GCGCAAGAAAGGTACCACTAAGA 60.863 47.826 15.94 0.00 43.02 2.10
1549 1650 4.312443 CGCAAGAAAGGTACCACTAAGAA 58.688 43.478 15.94 0.00 43.02 2.52
1571 1672 5.659849 ATAAGATCTTCCCTCAATGCCTT 57.340 39.130 12.24 0.00 0.00 4.35
1572 1673 3.574354 AGATCTTCCCTCAATGCCTTC 57.426 47.619 0.00 0.00 0.00 3.46
1593 1694 4.621991 TCTTTGCTCGTATCTTGCCTATC 58.378 43.478 0.00 0.00 0.00 2.08
1597 1698 3.056536 TGCTCGTATCTTGCCTATCATCC 60.057 47.826 0.00 0.00 0.00 3.51
1619 1720 2.232696 TCCCGTTCGATGAGTGAAATGA 59.767 45.455 0.00 0.00 0.00 2.57
1624 1725 4.346129 GTTCGATGAGTGAAATGATTGGC 58.654 43.478 0.00 0.00 0.00 4.52
1654 1755 3.111484 AGAACATTCCCTCTCTTCTCCC 58.889 50.000 0.00 0.00 0.00 4.30
1669 1770 2.110420 CCCCGGCGAATTACCTCC 59.890 66.667 9.30 0.00 0.00 4.30
1670 1771 2.279918 CCCGGCGAATTACCTCCG 60.280 66.667 9.30 0.00 41.41 4.63
1697 1798 1.165270 CCGAGGAAAATGGCGTCTTT 58.835 50.000 0.00 0.00 0.00 2.52
1938 2045 7.807977 TGAGTTAGCTTTCTTCAAATTCTGT 57.192 32.000 0.00 0.00 0.00 3.41
1939 2046 8.902540 TGAGTTAGCTTTCTTCAAATTCTGTA 57.097 30.769 0.00 0.00 0.00 2.74
1944 2051 9.772973 TTAGCTTTCTTCAAATTCTGTAGTACA 57.227 29.630 2.36 2.36 0.00 2.90
1968 2075 2.096596 GCTTCAGGCACAGCATCTC 58.903 57.895 0.00 0.00 41.35 2.75
1973 2080 0.108662 CAGGCACAGCATCTCGTGTA 60.109 55.000 0.00 0.00 35.51 2.90
1974 2081 0.108615 AGGCACAGCATCTCGTGTAC 60.109 55.000 0.00 0.00 35.51 2.90
1975 2082 0.108615 GGCACAGCATCTCGTGTACT 60.109 55.000 0.00 0.00 35.51 2.73
2003 2110 6.573434 AGAGAAAACAGAATTTTGTGGGTTC 58.427 36.000 1.85 7.22 0.00 3.62
2071 2195 3.570975 TCATATGCAACCAAGATGCCATC 59.429 43.478 0.00 0.00 43.16 3.51
2073 2197 0.971959 TGCAACCAAGATGCCATCCC 60.972 55.000 0.00 0.00 43.16 3.85
2112 2236 4.035017 CCTTTAAATATCAAAGCGTGCCG 58.965 43.478 4.84 0.00 32.69 5.69
2120 2244 3.883744 AAAGCGTGCCGAGTCCCAG 62.884 63.158 0.00 0.00 0.00 4.45
2145 2269 3.490761 CCATTGAAGAAACCAACAAGCGT 60.491 43.478 0.00 0.00 0.00 5.07
2153 2277 2.287393 ACCAACAAGCGTTCCAAAAC 57.713 45.000 0.00 0.00 31.13 2.43
2166 2290 8.126871 AGCGTTCCAAAACTTTTCTATTTTTC 57.873 30.769 0.00 0.00 32.95 2.29
2170 2294 7.458038 TCCAAAACTTTTCTATTTTTCGTGC 57.542 32.000 0.00 0.00 0.00 5.34
2181 2305 7.478520 TCTATTTTTCGTGCTTCCTATAAGC 57.521 36.000 2.81 2.81 43.29 3.09
2532 2656 3.072330 TGACCAGTCCTAGATGTTTGCAA 59.928 43.478 0.00 0.00 0.00 4.08
2584 2708 1.675552 CGCCCTGGGGTACTTTATTG 58.324 55.000 16.03 0.00 37.65 1.90
2736 2860 6.360370 AAGTCTTCTGTGCTAATGGTTCTA 57.640 37.500 0.00 0.00 0.00 2.10
2802 2933 3.153919 TGATGGAGTGCCCTTGTTTTAC 58.846 45.455 0.00 0.00 35.38 2.01
2845 3027 9.088512 GTTGATATACTGTAGAACTTTCCACTG 57.911 37.037 0.00 0.00 0.00 3.66
2857 3039 5.762179 ACTTTCCACTGGAATCACTCATA 57.238 39.130 11.47 0.00 41.71 2.15
2858 3040 6.319048 ACTTTCCACTGGAATCACTCATAT 57.681 37.500 11.47 0.00 41.71 1.78
2859 3041 6.725364 ACTTTCCACTGGAATCACTCATATT 58.275 36.000 11.47 0.00 41.71 1.28
2860 3042 6.600822 ACTTTCCACTGGAATCACTCATATTG 59.399 38.462 11.47 0.00 41.71 1.90
2863 3048 6.903516 TCCACTGGAATCACTCATATTGAAT 58.096 36.000 0.00 0.00 0.00 2.57
2864 3049 6.994496 TCCACTGGAATCACTCATATTGAATC 59.006 38.462 0.00 0.00 0.00 2.52
2872 3057 6.166984 TCACTCATATTGAATCAGGGAGAC 57.833 41.667 8.69 0.00 0.00 3.36
2877 3062 7.016072 ACTCATATTGAATCAGGGAGACTTAGG 59.984 40.741 8.69 0.00 0.00 2.69
2883 3068 0.340208 CAGGGAGACTTAGGGGGACT 59.660 60.000 0.00 0.00 0.00 3.85
2885 3070 0.338814 GGGAGACTTAGGGGGACTGA 59.661 60.000 0.00 0.00 0.00 3.41
2888 3073 2.090999 GGAGACTTAGGGGGACTGAGAT 60.091 54.545 0.00 0.00 36.38 2.75
2889 3074 3.140519 GGAGACTTAGGGGGACTGAGATA 59.859 52.174 0.00 0.00 36.38 1.98
2890 3075 4.146564 GAGACTTAGGGGGACTGAGATAC 58.853 52.174 0.00 0.00 36.38 2.24
2891 3076 3.794971 AGACTTAGGGGGACTGAGATACT 59.205 47.826 0.00 0.00 36.38 2.12
2892 3077 4.141111 AGACTTAGGGGGACTGAGATACTC 60.141 50.000 0.00 0.00 36.38 2.59
2893 3078 3.117054 ACTTAGGGGGACTGAGATACTCC 60.117 52.174 0.00 0.00 36.38 3.85
2894 3079 0.563672 AGGGGGACTGAGATACTCCC 59.436 60.000 0.00 0.00 42.88 4.30
2895 3080 0.563672 GGGGGACTGAGATACTCCCT 59.436 60.000 5.92 0.00 43.13 4.20
2896 3081 1.481615 GGGGGACTGAGATACTCCCTC 60.482 61.905 5.92 0.00 43.13 4.30
2897 3082 1.501604 GGGGACTGAGATACTCCCTCT 59.498 57.143 5.92 0.00 43.13 3.69
2898 3083 2.593026 GGGACTGAGATACTCCCTCTG 58.407 57.143 0.00 0.00 40.69 3.35
2899 3084 2.091555 GGGACTGAGATACTCCCTCTGT 60.092 54.545 0.00 0.00 42.76 3.41
2900 3085 3.138653 GGGACTGAGATACTCCCTCTGTA 59.861 52.174 0.00 0.00 41.04 2.74
2901 3086 4.386536 GGGACTGAGATACTCCCTCTGTAA 60.387 50.000 0.00 0.00 41.04 2.41
2902 3087 5.202004 GGACTGAGATACTCCCTCTGTAAA 58.798 45.833 0.00 0.00 41.04 2.01
2903 3088 5.300792 GGACTGAGATACTCCCTCTGTAAAG 59.699 48.000 0.00 0.00 41.04 1.85
2904 3089 6.080969 ACTGAGATACTCCCTCTGTAAAGA 57.919 41.667 0.00 0.00 39.81 2.52
2905 3090 6.494952 ACTGAGATACTCCCTCTGTAAAGAA 58.505 40.000 0.00 0.00 39.81 2.52
2906 3091 6.954684 ACTGAGATACTCCCTCTGTAAAGAAA 59.045 38.462 0.00 0.00 39.81 2.52
2907 3092 7.621683 ACTGAGATACTCCCTCTGTAAAGAAAT 59.378 37.037 0.00 0.00 39.81 2.17
2908 3093 9.137459 CTGAGATACTCCCTCTGTAAAGAAATA 57.863 37.037 0.00 0.00 0.00 1.40
2909 3094 9.661954 TGAGATACTCCCTCTGTAAAGAAATAT 57.338 33.333 0.00 0.00 0.00 1.28
2915 3100 8.706521 ACTCCCTCTGTAAAGAAATATAAGACC 58.293 37.037 0.00 0.00 0.00 3.85
2916 3101 7.723324 TCCCTCTGTAAAGAAATATAAGACCG 58.277 38.462 0.00 0.00 0.00 4.79
2917 3102 7.343833 TCCCTCTGTAAAGAAATATAAGACCGT 59.656 37.037 0.00 0.00 0.00 4.83
2918 3103 7.985752 CCCTCTGTAAAGAAATATAAGACCGTT 59.014 37.037 0.00 0.00 0.00 4.44
2919 3104 9.379791 CCTCTGTAAAGAAATATAAGACCGTTT 57.620 33.333 0.00 0.00 0.00 3.60
2935 3120 7.700022 AGACCGTTTAGATCACTAAAGTAGT 57.300 36.000 0.00 0.00 45.42 2.73
2967 3152 7.730364 ATGCTCTTATATTTGTTTACGGAGG 57.270 36.000 0.00 0.00 0.00 4.30
2968 3153 6.053005 TGCTCTTATATTTGTTTACGGAGGG 58.947 40.000 0.00 0.00 0.00 4.30
2969 3154 6.126997 TGCTCTTATATTTGTTTACGGAGGGA 60.127 38.462 0.00 0.00 0.00 4.20
2970 3155 6.424207 GCTCTTATATTTGTTTACGGAGGGAG 59.576 42.308 0.00 0.00 0.00 4.30
2986 3171 4.281435 GGAGGGAGTACAGATTAAGTAGGC 59.719 50.000 0.00 0.00 0.00 3.93
2987 3172 4.880164 AGGGAGTACAGATTAAGTAGGCA 58.120 43.478 0.00 0.00 0.00 4.75
2991 3176 6.403878 GGAGTACAGATTAAGTAGGCAACAA 58.596 40.000 0.00 0.00 41.41 2.83
3017 3202 8.450578 TTTCTTTTCTGCTTTAGTCATTCAGA 57.549 30.769 0.00 0.00 32.58 3.27
3059 3250 3.550030 CGGTCTGTTTCACATTTTGGACC 60.550 47.826 0.00 0.00 35.99 4.46
3078 3270 1.691196 CTTGTGGTGGTGTGGAATGT 58.309 50.000 0.00 0.00 0.00 2.71
3143 3335 4.097892 ACACAATGGTTTTCTGAACTGACC 59.902 41.667 8.90 8.90 0.00 4.02
3187 3381 4.466828 CAAAAGCTCGTGGTTTACATCAG 58.533 43.478 14.25 0.00 42.26 2.90
3203 3397 5.363562 ACATCAGGTTCAGATAGCAATGA 57.636 39.130 0.00 0.00 0.00 2.57
3213 3407 7.650903 GGTTCAGATAGCAATGATGATTTTTCC 59.349 37.037 0.00 0.00 0.00 3.13
3516 3710 1.404035 GTCCCGGAAATGGTATGCAAC 59.596 52.381 0.73 0.00 0.00 4.17
3523 3717 4.987912 CGGAAATGGTATGCAACTTTTTGT 59.012 37.500 0.00 0.00 34.90 2.83
3625 3819 1.152673 GCCAATGGATGAGTCCCCC 60.153 63.158 2.05 0.00 44.41 5.40
3672 3866 3.004002 TGCAGCACTCAAGATGAAACAAG 59.996 43.478 0.00 0.00 0.00 3.16
3673 3867 3.004106 GCAGCACTCAAGATGAAACAAGT 59.996 43.478 0.00 0.00 0.00 3.16
3778 3972 2.541762 GCAGCACGAGGAATCTGAATAC 59.458 50.000 0.00 0.00 0.00 1.89
3780 3974 2.128035 GCACGAGGAATCTGAATACGG 58.872 52.381 0.00 0.00 0.00 4.02
3793 3987 2.222027 GAATACGGAGGGCCTTCATTG 58.778 52.381 17.76 8.25 0.00 2.82
3829 4023 4.441792 TGGAGATGAACAATGGTGTATCG 58.558 43.478 0.00 0.00 36.80 2.92
3872 4066 1.002087 CAGTTCCAGCGTTCTACCCTT 59.998 52.381 0.00 0.00 0.00 3.95
3934 4128 5.473039 GTTTCTAATGTGGAAGCAGCAAAT 58.527 37.500 0.00 0.00 0.00 2.32
4051 4245 1.139853 GGTACCTCTGGCTCAATGGAG 59.860 57.143 4.06 0.00 44.33 3.86
4412 4606 6.420008 CACTATTGCTACCTTTACGGATACAC 59.580 42.308 0.00 0.00 36.31 2.90
4438 4632 8.290325 CCTTCACTACTTTGGAGATTTTTGTAC 58.710 37.037 0.00 0.00 0.00 2.90
4630 4832 9.244799 GTTTTTGTAGACTGTTAAATTCCTTGG 57.755 33.333 0.00 0.00 0.00 3.61
4632 4834 5.007682 TGTAGACTGTTAAATTCCTTGGCC 58.992 41.667 0.00 0.00 0.00 5.36
4634 4836 4.740902 AGACTGTTAAATTCCTTGGCCTT 58.259 39.130 3.32 0.00 0.00 4.35
4635 4837 4.767409 AGACTGTTAAATTCCTTGGCCTTC 59.233 41.667 3.32 0.00 0.00 3.46
4718 5005 4.268644 GCAGTTTTTCTGTTCCTTTTCTGC 59.731 41.667 0.00 0.00 45.23 4.26
4816 5103 5.634896 CACTAAAATGTCAGTTCTCATGCC 58.365 41.667 0.00 0.00 0.00 4.40
4872 5159 2.437359 AAGCACCAGATCGGCAGC 60.437 61.111 11.12 11.12 39.03 5.25
4901 5188 3.245048 CCTTTGGTTTGTCGCATTGTTTC 59.755 43.478 0.00 0.00 0.00 2.78
4902 5189 2.112475 TGGTTTGTCGCATTGTTTCG 57.888 45.000 0.00 0.00 0.00 3.46
4904 5191 2.097629 TGGTTTGTCGCATTGTTTCGAA 59.902 40.909 0.00 0.00 36.41 3.71
4946 5233 7.643764 TCAATTTTAGTCTTGCAAAAGTTCGAG 59.356 33.333 0.00 0.00 0.00 4.04
4947 5234 4.468095 TTAGTCTTGCAAAAGTTCGAGC 57.532 40.909 0.00 0.00 0.00 5.03
4958 5245 6.203915 TGCAAAAGTTCGAGCTGAAGTATTAA 59.796 34.615 1.31 0.00 39.36 1.40
4967 5254 3.561725 AGCTGAAGTATTAAGCGAATGCC 59.438 43.478 0.00 0.00 44.31 4.40
4975 5262 6.441274 AGTATTAAGCGAATGCCAATCATTG 58.559 36.000 0.00 0.00 44.95 2.82
4991 5280 7.221452 GCCAATCATTGTGTTTGACTTGATATC 59.779 37.037 0.00 0.00 30.71 1.63
5014 5303 4.811024 CGTCTTCTTGATAGCCTATTTGCA 59.189 41.667 0.00 0.00 0.00 4.08
5139 5428 8.109634 TCTTTATTCTCAAAGGAAGCCACTTAT 58.890 33.333 0.00 0.00 36.39 1.73
5188 5479 3.260380 ACAGGTCACTCCAGAAGATGAAG 59.740 47.826 0.00 0.00 39.02 3.02
5190 5481 2.093235 GGTCACTCCAGAAGATGAAGGG 60.093 54.545 0.00 0.00 35.97 3.95
5192 5483 2.191400 CACTCCAGAAGATGAAGGGGA 58.809 52.381 0.00 0.00 0.00 4.81
5194 5485 2.573915 ACTCCAGAAGATGAAGGGGAAC 59.426 50.000 0.00 0.00 0.00 3.62
5195 5486 2.573462 CTCCAGAAGATGAAGGGGAACA 59.427 50.000 0.00 0.00 0.00 3.18
5196 5487 3.192944 TCCAGAAGATGAAGGGGAACAT 58.807 45.455 0.00 0.00 0.00 2.71
5197 5488 3.054139 TCCAGAAGATGAAGGGGAACATG 60.054 47.826 0.00 0.00 0.00 3.21
5198 5489 2.686915 CAGAAGATGAAGGGGAACATGC 59.313 50.000 0.00 0.00 0.00 4.06
5210 5502 3.211564 AACATGCCGCAGTGCAACC 62.212 57.895 16.83 2.74 45.84 3.77
5219 5511 3.953775 AGTGCAACCCGGGTCAGG 61.954 66.667 30.40 20.65 37.80 3.86
5249 5541 6.808008 TTTCTCAGTAATGAAGCAAGAAGG 57.192 37.500 0.00 0.00 0.00 3.46
5261 5553 3.986277 AGCAAGAAGGCAAGAATTTGTG 58.014 40.909 0.00 0.00 36.65 3.33
5272 5564 4.376311 GCAAGAATTTGTGCCAAATCGAAC 60.376 41.667 11.87 6.41 36.65 3.95
5279 5571 3.331150 TGTGCCAAATCGAACGAAGTAT 58.669 40.909 0.12 0.00 45.00 2.12
5280 5572 4.496360 TGTGCCAAATCGAACGAAGTATA 58.504 39.130 0.12 0.00 45.00 1.47
5281 5573 4.565166 TGTGCCAAATCGAACGAAGTATAG 59.435 41.667 0.12 0.00 45.00 1.31
5282 5574 4.802039 GTGCCAAATCGAACGAAGTATAGA 59.198 41.667 0.12 0.00 45.00 1.98
5283 5575 5.290158 GTGCCAAATCGAACGAAGTATAGAA 59.710 40.000 0.12 0.00 45.00 2.10
5284 5576 5.518847 TGCCAAATCGAACGAAGTATAGAAG 59.481 40.000 0.12 0.00 45.00 2.85
5285 5577 5.050972 GCCAAATCGAACGAAGTATAGAAGG 60.051 44.000 0.12 0.00 45.00 3.46
5286 5578 6.040878 CCAAATCGAACGAAGTATAGAAGGT 58.959 40.000 0.12 0.00 45.00 3.50
5287 5579 6.019801 CCAAATCGAACGAAGTATAGAAGGTG 60.020 42.308 0.12 0.00 45.00 4.00
5288 5580 4.025015 TCGAACGAAGTATAGAAGGTGC 57.975 45.455 0.00 0.00 45.00 5.01
5289 5581 3.693085 TCGAACGAAGTATAGAAGGTGCT 59.307 43.478 0.00 0.00 45.00 4.40
5290 5582 4.036352 CGAACGAAGTATAGAAGGTGCTC 58.964 47.826 0.00 0.00 45.00 4.26
5291 5583 4.438336 CGAACGAAGTATAGAAGGTGCTCA 60.438 45.833 0.00 0.00 45.00 4.26
5292 5584 5.593010 GAACGAAGTATAGAAGGTGCTCAT 58.407 41.667 0.00 0.00 45.00 2.90
5293 5585 4.938080 ACGAAGTATAGAAGGTGCTCATG 58.062 43.478 0.00 0.00 41.94 3.07
5294 5586 3.738282 CGAAGTATAGAAGGTGCTCATGC 59.262 47.826 0.00 0.00 40.20 4.06
5295 5587 7.130288 ACGAAGTATAGAAGGTGCTCATGCA 62.130 44.000 0.00 0.00 44.34 3.96
5305 5597 2.271957 GCTCATGCAAACGCAATCG 58.728 52.632 0.00 0.00 44.09 3.34
5306 5598 0.179192 GCTCATGCAAACGCAATCGA 60.179 50.000 0.00 0.00 44.09 3.59
5307 5599 1.806511 CTCATGCAAACGCAATCGAG 58.193 50.000 0.00 0.00 44.09 4.04
5308 5600 0.447406 TCATGCAAACGCAATCGAGG 59.553 50.000 0.00 0.00 44.09 4.63
5309 5601 0.523968 CATGCAAACGCAATCGAGGG 60.524 55.000 0.00 0.00 44.09 4.30
5310 5602 2.202479 GCAAACGCAATCGAGGGC 60.202 61.111 1.22 1.22 39.41 5.19
5311 5603 2.976840 GCAAACGCAATCGAGGGCA 61.977 57.895 11.10 0.00 39.41 5.36
5312 5604 1.154225 CAAACGCAATCGAGGGCAC 60.154 57.895 11.10 0.00 39.41 5.01
5313 5605 2.677003 AAACGCAATCGAGGGCACG 61.677 57.895 11.10 3.68 39.41 5.34
5317 5609 3.197790 CAATCGAGGGCACGGCTG 61.198 66.667 0.00 0.00 0.00 4.85
5318 5610 3.390521 AATCGAGGGCACGGCTGA 61.391 61.111 0.00 0.00 0.00 4.26
5319 5611 3.376935 AATCGAGGGCACGGCTGAG 62.377 63.158 0.00 0.00 0.00 3.35
5321 5613 3.449227 CGAGGGCACGGCTGAGTA 61.449 66.667 0.00 0.00 0.00 2.59
5322 5614 2.184579 GAGGGCACGGCTGAGTAC 59.815 66.667 0.00 0.00 0.00 2.73
5323 5615 2.603473 AGGGCACGGCTGAGTACA 60.603 61.111 0.00 0.00 0.00 2.90
5324 5616 1.961180 GAGGGCACGGCTGAGTACAT 61.961 60.000 0.00 0.00 0.00 2.29
5325 5617 1.815421 GGGCACGGCTGAGTACATG 60.815 63.158 0.00 0.00 0.00 3.21
5326 5618 1.815421 GGCACGGCTGAGTACATGG 60.815 63.158 0.00 0.00 0.00 3.66
5327 5619 1.218047 GCACGGCTGAGTACATGGA 59.782 57.895 0.00 0.00 0.00 3.41
5328 5620 0.391130 GCACGGCTGAGTACATGGAA 60.391 55.000 0.00 0.00 0.00 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.039605 CAGGTTGCATATGTCATTTGGTATCA 59.960 38.462 4.29 0.00 0.00 2.15
15 16 3.423539 AAGTTGCTCTCAGGTTGCATA 57.576 42.857 0.00 0.00 36.55 3.14
19 20 6.876257 ACTCTATTAAAGTTGCTCTCAGGTTG 59.124 38.462 0.00 0.00 0.00 3.77
32 33 9.988815 CTGCTAATATGGTGACTCTATTAAAGT 57.011 33.333 0.00 0.00 0.00 2.66
36 37 6.726299 AGGCTGCTAATATGGTGACTCTATTA 59.274 38.462 0.00 0.00 0.00 0.98
38 39 5.090139 AGGCTGCTAATATGGTGACTCTAT 58.910 41.667 0.00 0.00 0.00 1.98
73 74 2.423926 ACTATATGGAGCGTGCTTCG 57.576 50.000 0.00 0.00 43.12 3.79
109 110 3.667497 TTCTCACTTTGCTCATCTCGT 57.333 42.857 0.00 0.00 0.00 4.18
117 118 2.061773 CGTGACGATTCTCACTTTGCT 58.938 47.619 0.00 0.00 38.79 3.91
119 120 2.794910 ACACGTGACGATTCTCACTTTG 59.205 45.455 25.01 0.00 38.79 2.77
125 126 0.388649 AGCCACACGTGACGATTCTC 60.389 55.000 25.01 2.16 0.00 2.87
137 138 1.680735 TGTCATTGTTGGAAGCCACAC 59.319 47.619 0.00 0.00 30.78 3.82
138 139 2.064434 TGTCATTGTTGGAAGCCACA 57.936 45.000 0.00 0.00 30.78 4.17
151 152 4.588106 TGGGATGTCAAAACACATGTCATT 59.412 37.500 0.00 0.00 37.11 2.57
152 153 4.151121 TGGGATGTCAAAACACATGTCAT 58.849 39.130 0.00 0.00 37.11 3.06
155 156 5.540911 GAATTGGGATGTCAAAACACATGT 58.459 37.500 0.00 0.00 37.11 3.21
168 169 0.394216 TGAGTGGGCGAATTGGGATG 60.394 55.000 0.00 0.00 0.00 3.51
189 190 2.835431 AGGATCCCACGCTCCTCG 60.835 66.667 8.55 0.00 37.30 4.63
227 228 1.401670 CCGAGAAAGAGGAGTGTCACG 60.402 57.143 0.00 0.00 0.00 4.35
228 229 1.670380 GCCGAGAAAGAGGAGTGTCAC 60.670 57.143 0.00 0.00 0.00 3.67
279 280 3.433882 GGAGAAGTGGATCCTAGTCGAGA 60.434 52.174 14.23 0.00 32.51 4.04
286 287 4.420552 ACATAGGAGGAGAAGTGGATCCTA 59.579 45.833 14.23 1.98 46.12 2.94
294 295 5.390387 GGTAGATCACATAGGAGGAGAAGT 58.610 45.833 0.00 0.00 0.00 3.01
309 310 2.836360 GGCCGGACGGGTAGATCA 60.836 66.667 5.05 0.00 38.44 2.92
310 311 3.974757 CGGCCGGACGGGTAGATC 61.975 72.222 25.90 0.00 38.44 2.75
318 319 3.122250 CTTCCTCTACGGCCGGACG 62.122 68.421 32.33 32.33 40.31 4.79
327 328 2.187163 GCCCACGGCTTCCTCTAC 59.813 66.667 0.00 0.00 46.69 2.59
341 342 4.253257 CTCGTAGCCTCGTCGCCC 62.253 72.222 0.00 0.00 0.00 6.13
352 353 4.172505 GCCATGAATGATCTAGCTCGTAG 58.827 47.826 0.00 0.00 0.00 3.51
377 378 2.032178 GGCTGCAGCTATAAAAAGGTCG 59.968 50.000 35.82 0.00 41.70 4.79
400 401 2.282462 CTTTTCCCTGCCGCCTGT 60.282 61.111 0.00 0.00 0.00 4.00
421 422 2.799412 GCAATTGTCGCCATGTTTTCAA 59.201 40.909 7.40 0.00 0.00 2.69
434 435 0.664166 CAACTGCCCACGCAATTGTC 60.664 55.000 7.40 0.00 45.01 3.18
435 436 1.363443 CAACTGCCCACGCAATTGT 59.637 52.632 7.40 0.00 45.01 2.71
436 437 4.248402 CAACTGCCCACGCAATTG 57.752 55.556 0.00 0.00 44.79 2.32
461 463 1.160329 AGCTAATGAATGACGGCCGC 61.160 55.000 28.58 19.01 0.00 6.53
472 474 3.173151 TGACCTGGAAGTGAGCTAATGA 58.827 45.455 0.00 0.00 0.00 2.57
473 475 3.616956 TGACCTGGAAGTGAGCTAATG 57.383 47.619 0.00 0.00 0.00 1.90
474 476 4.640771 TTTGACCTGGAAGTGAGCTAAT 57.359 40.909 0.00 0.00 0.00 1.73
482 484 3.139077 GACGTCAATTTGACCTGGAAGT 58.861 45.455 20.87 12.93 44.20 3.01
490 492 3.309954 GGATGGCTAGACGTCAATTTGAC 59.690 47.826 19.59 17.76 43.65 3.18
492 494 2.285220 CGGATGGCTAGACGTCAATTTG 59.715 50.000 19.59 3.77 0.00 2.32
494 496 1.806623 GCGGATGGCTAGACGTCAATT 60.807 52.381 19.59 0.00 39.11 2.32
499 501 3.900892 CCGCGGATGGCTAGACGT 61.901 66.667 24.07 0.00 40.44 4.34
516 518 2.017049 ACCTTCCGTCATTGCTAATGC 58.983 47.619 4.56 0.00 38.77 3.56
525 527 0.680921 CATGGCCAACCTTCCGTCAT 60.681 55.000 10.96 0.00 36.63 3.06
529 531 0.748005 CCTACATGGCCAACCTTCCG 60.748 60.000 10.96 0.00 36.63 4.30
535 537 1.490490 TCATCCTCCTACATGGCCAAC 59.510 52.381 10.96 0.00 35.26 3.77
547 549 2.781681 TTCGTCCCTTTTCATCCTCC 57.218 50.000 0.00 0.00 0.00 4.30
562 564 0.320374 TCGTGCAGAAGGGAATTCGT 59.680 50.000 0.00 0.00 43.16 3.85
563 565 1.002366 CTCGTGCAGAAGGGAATTCG 58.998 55.000 0.00 0.00 43.16 3.34
566 568 1.448540 CGCTCGTGCAGAAGGGAAT 60.449 57.895 10.43 0.00 39.64 3.01
575 577 0.319986 TATTGTCAACCGCTCGTGCA 60.320 50.000 10.43 0.00 39.64 4.57
578 580 1.463444 GCTTTATTGTCAACCGCTCGT 59.537 47.619 0.00 0.00 0.00 4.18
595 597 1.260544 GTTGATTTGGAGCAGGGCTT 58.739 50.000 0.00 0.00 39.88 4.35
599 601 0.962356 AGGCGTTGATTTGGAGCAGG 60.962 55.000 0.00 0.00 0.00 4.85
600 602 0.449388 GAGGCGTTGATTTGGAGCAG 59.551 55.000 0.00 0.00 0.00 4.24
637 639 2.052104 AAATACAGCCGGCAAGCCC 61.052 57.895 31.54 0.00 0.00 5.19
657 659 2.222953 ACCATAATTTCGAAACGCGCTC 60.223 45.455 13.81 1.55 40.61 5.03
668 670 3.321968 GCCCTCCCAATCACCATAATTTC 59.678 47.826 0.00 0.00 0.00 2.17
677 679 4.506255 CCCCGCCCTCCCAATCAC 62.506 72.222 0.00 0.00 0.00 3.06
693 695 0.108756 GGTACAGAAGAGTCGCCACC 60.109 60.000 0.00 0.00 0.00 4.61
718 723 7.014711 TGACCAGTGGTTTAGCAATTTTGATAA 59.985 33.333 17.93 0.00 37.27 1.75
719 724 6.491745 TGACCAGTGGTTTAGCAATTTTGATA 59.508 34.615 17.93 0.00 35.25 2.15
731 736 6.315144 CGATCAACATAATGACCAGTGGTTTA 59.685 38.462 17.93 12.48 35.25 2.01
732 737 5.123820 CGATCAACATAATGACCAGTGGTTT 59.876 40.000 17.93 10.45 35.25 3.27
738 743 2.549754 GCCCGATCAACATAATGACCAG 59.450 50.000 0.00 0.00 30.82 4.00
751 756 1.176619 ACGTCATATCGGCCCGATCA 61.177 55.000 24.15 9.73 43.45 2.92
756 761 0.039074 CTGAGACGTCATATCGGCCC 60.039 60.000 19.50 0.00 40.00 5.80
767 772 1.005630 GCAACTCTGGCTGAGACGT 60.006 57.895 25.68 9.26 45.39 4.34
770 775 1.372683 GGTGCAACTCTGGCTGAGA 59.627 57.895 25.68 1.14 45.39 3.27
775 780 1.503542 CATTCGGTGCAACTCTGGC 59.496 57.895 0.00 0.00 36.74 4.85
776 781 0.321564 TCCATTCGGTGCAACTCTGG 60.322 55.000 0.00 3.86 36.74 3.86
777 782 1.081892 CTCCATTCGGTGCAACTCTG 58.918 55.000 0.00 0.00 36.74 3.35
780 785 0.687354 AGACTCCATTCGGTGCAACT 59.313 50.000 0.00 0.00 36.74 3.16
791 796 3.887621 TTAAGCTTACGCAGACTCCAT 57.112 42.857 5.45 0.00 39.10 3.41
792 797 3.671008 TTTAAGCTTACGCAGACTCCA 57.329 42.857 5.45 0.00 39.10 3.86
794 799 7.477733 GTGTTTATTTTAAGCTTACGCAGACTC 59.522 37.037 5.45 0.00 39.10 3.36
795 800 7.172703 AGTGTTTATTTTAAGCTTACGCAGACT 59.827 33.333 5.45 0.00 39.10 3.24
796 801 7.268447 CAGTGTTTATTTTAAGCTTACGCAGAC 59.732 37.037 5.45 2.35 39.10 3.51
797 802 7.171848 TCAGTGTTTATTTTAAGCTTACGCAGA 59.828 33.333 5.45 1.92 39.10 4.26
798 803 7.295201 TCAGTGTTTATTTTAAGCTTACGCAG 58.705 34.615 5.45 0.00 39.10 5.18
799 804 7.192148 TCAGTGTTTATTTTAAGCTTACGCA 57.808 32.000 5.45 0.00 39.10 5.24
800 805 8.575454 CAATCAGTGTTTATTTTAAGCTTACGC 58.425 33.333 5.45 2.07 0.00 4.42
801 806 8.575454 GCAATCAGTGTTTATTTTAAGCTTACG 58.425 33.333 5.45 0.00 0.00 3.18
802 807 8.575454 CGCAATCAGTGTTTATTTTAAGCTTAC 58.425 33.333 5.45 0.00 0.00 2.34
803 808 8.293867 ACGCAATCAGTGTTTATTTTAAGCTTA 58.706 29.630 0.86 0.86 37.83 3.09
860 939 2.358003 GAGGAGCTTGCGTGTGCT 60.358 61.111 0.00 0.00 43.34 4.40
869 948 2.128729 GGCTGTATCCGAGGAGCTT 58.871 57.895 0.00 0.00 0.00 3.74
904 983 2.151202 CGGTAAACTCCACTTGTGCAT 58.849 47.619 0.00 0.00 0.00 3.96
975 1058 1.377856 GGGGTTGAGAGAGCCTTGC 60.378 63.158 0.00 0.00 37.35 4.01
977 1060 0.912006 GGAGGGGTTGAGAGAGCCTT 60.912 60.000 0.00 0.00 37.35 4.35
981 1064 1.006519 TGAGAGGAGGGGTTGAGAGAG 59.993 57.143 0.00 0.00 0.00 3.20
982 1065 1.084866 TGAGAGGAGGGGTTGAGAGA 58.915 55.000 0.00 0.00 0.00 3.10
983 1066 1.944177 TTGAGAGGAGGGGTTGAGAG 58.056 55.000 0.00 0.00 0.00 3.20
984 1067 2.649742 ATTGAGAGGAGGGGTTGAGA 57.350 50.000 0.00 0.00 0.00 3.27
1037 1120 3.832490 TCTATCTCTCTCTCTCTCCGGAG 59.168 52.174 26.32 26.32 40.73 4.63
1056 1139 3.053077 CCTCCTTCCCTCTCTCTCTCTA 58.947 54.545 0.00 0.00 0.00 2.43
1061 1144 1.007842 GTTCCCTCCTTCCCTCTCTCT 59.992 57.143 0.00 0.00 0.00 3.10
1066 1149 0.249676 GTTCGTTCCCTCCTTCCCTC 59.750 60.000 0.00 0.00 0.00 4.30
1067 1150 0.178900 AGTTCGTTCCCTCCTTCCCT 60.179 55.000 0.00 0.00 0.00 4.20
1068 1151 0.036294 CAGTTCGTTCCCTCCTTCCC 60.036 60.000 0.00 0.00 0.00 3.97
1069 1152 0.974383 TCAGTTCGTTCCCTCCTTCC 59.026 55.000 0.00 0.00 0.00 3.46
1070 1153 2.414806 GTTCAGTTCGTTCCCTCCTTC 58.585 52.381 0.00 0.00 0.00 3.46
1071 1154 1.270147 CGTTCAGTTCGTTCCCTCCTT 60.270 52.381 0.00 0.00 0.00 3.36
1072 1155 0.317479 CGTTCAGTTCGTTCCCTCCT 59.683 55.000 0.00 0.00 0.00 3.69
1078 1161 1.436606 GTGCGCGTTCAGTTCGTTC 60.437 57.895 8.43 0.00 0.00 3.95
1113 1196 0.744771 GGGAGCCAAAGGAAGCGTAG 60.745 60.000 0.00 0.00 0.00 3.51
1156 1239 4.968164 CGTGTTCGTGCGTGCGTG 62.968 66.667 1.25 0.00 0.00 5.34
1310 1393 3.712881 GTGAGGTGCACGCCGAAC 61.713 66.667 11.45 0.92 37.83 3.95
1544 1645 7.072961 AGGCATTGAGGGAAGATCTTATTCTTA 59.927 37.037 8.25 0.68 36.10 2.10
1545 1646 6.067350 GGCATTGAGGGAAGATCTTATTCTT 58.933 40.000 8.25 0.00 38.65 2.52
1546 1647 5.372066 AGGCATTGAGGGAAGATCTTATTCT 59.628 40.000 8.25 6.19 0.00 2.40
1547 1648 5.629125 AGGCATTGAGGGAAGATCTTATTC 58.371 41.667 8.25 7.12 0.00 1.75
1548 1649 5.659849 AGGCATTGAGGGAAGATCTTATT 57.340 39.130 8.25 0.00 0.00 1.40
1549 1650 5.372066 AGAAGGCATTGAGGGAAGATCTTAT 59.628 40.000 8.25 0.00 0.00 1.73
1571 1672 4.099419 TGATAGGCAAGATACGAGCAAAGA 59.901 41.667 0.00 0.00 0.00 2.52
1572 1673 4.371786 TGATAGGCAAGATACGAGCAAAG 58.628 43.478 0.00 0.00 0.00 2.77
1593 1694 0.747255 ACTCATCGAACGGGAGGATG 59.253 55.000 16.14 0.00 39.07 3.51
1597 1698 2.363788 TTTCACTCATCGAACGGGAG 57.636 50.000 12.40 12.40 34.85 4.30
1619 1720 1.077716 GTTCTACCGCCCAGCCAAT 60.078 57.895 0.00 0.00 0.00 3.16
1624 1725 0.463833 GGGAATGTTCTACCGCCCAG 60.464 60.000 0.00 0.00 35.63 4.45
1669 1770 0.736325 ATTTTCCTCGGTCGCTCACG 60.736 55.000 0.00 0.00 42.01 4.35
1670 1771 0.721718 CATTTTCCTCGGTCGCTCAC 59.278 55.000 0.00 0.00 0.00 3.51
1832 1933 2.103263 CTCTCCTAGCTGCGGGTTTTAT 59.897 50.000 0.81 0.00 0.00 1.40
1833 1934 1.480954 CTCTCCTAGCTGCGGGTTTTA 59.519 52.381 0.81 0.00 0.00 1.52
1834 1935 0.250513 CTCTCCTAGCTGCGGGTTTT 59.749 55.000 0.81 0.00 0.00 2.43
1835 1936 1.617947 CCTCTCCTAGCTGCGGGTTT 61.618 60.000 0.81 0.00 0.00 3.27
1836 1937 2.060980 CCTCTCCTAGCTGCGGGTT 61.061 63.158 0.81 0.00 0.00 4.11
1837 1938 2.443016 CCTCTCCTAGCTGCGGGT 60.443 66.667 1.35 1.35 0.00 5.28
1838 1939 1.330655 TTTCCTCTCCTAGCTGCGGG 61.331 60.000 0.00 8.09 0.00 6.13
1839 1940 0.103937 CTTTCCTCTCCTAGCTGCGG 59.896 60.000 0.00 0.00 0.00 5.69
1840 1941 1.066908 CTCTTTCCTCTCCTAGCTGCG 59.933 57.143 0.00 0.00 0.00 5.18
1915 2022 8.994170 ACTACAGAATTTGAAGAAAGCTAACTC 58.006 33.333 0.00 0.00 0.00 3.01
1973 2080 7.254795 CCACAAAATTCTGTTTTCTCTCGTAGT 60.255 37.037 0.00 0.00 0.00 2.73
1974 2081 7.072030 CCACAAAATTCTGTTTTCTCTCGTAG 58.928 38.462 0.00 0.00 0.00 3.51
1975 2082 6.017440 CCCACAAAATTCTGTTTTCTCTCGTA 60.017 38.462 0.00 0.00 0.00 3.43
2003 2110 5.246307 ACGAGGAACTAAAAAGAAGGGATG 58.754 41.667 0.00 0.00 41.55 3.51
2071 2195 3.635591 AGGAGGTTTGCTTATCATTGGG 58.364 45.455 0.00 0.00 0.00 4.12
2112 2236 1.909302 TCTTCAATGGGACTGGGACTC 59.091 52.381 0.00 0.00 0.00 3.36
2120 2244 4.620982 CTTGTTGGTTTCTTCAATGGGAC 58.379 43.478 0.00 0.00 0.00 4.46
2122 2246 3.392882 GCTTGTTGGTTTCTTCAATGGG 58.607 45.455 0.00 0.00 0.00 4.00
2145 2269 7.762159 AGCACGAAAAATAGAAAAGTTTTGGAA 59.238 29.630 5.36 0.00 0.00 3.53
2170 2294 9.956720 CCACTCAAAATAATTGCTTATAGGAAG 57.043 33.333 0.00 0.00 0.00 3.46
2181 2305 9.874205 ATTATTGACACCCACTCAAAATAATTG 57.126 29.630 0.00 0.00 31.48 2.32
2193 2317 5.837437 TGTGTTCAAATTATTGACACCCAC 58.163 37.500 13.19 9.99 45.01 4.61
2379 2503 1.521457 TCGCTCCGCAATGTGATCC 60.521 57.895 0.00 0.00 0.00 3.36
2584 2708 1.538849 CCTTTGAAGCCAAGTGCCAAC 60.539 52.381 0.00 0.00 42.71 3.77
2708 2832 6.951971 ACCATTAGCACAGAAGACTTAAGAT 58.048 36.000 10.09 0.00 0.00 2.40
2710 2834 6.876257 AGAACCATTAGCACAGAAGACTTAAG 59.124 38.462 0.00 0.00 0.00 1.85
2736 2860 9.593134 TTGTAGCGGCATATTTCAATTAATTTT 57.407 25.926 1.45 0.00 0.00 1.82
2744 2868 5.574891 ATGTTTGTAGCGGCATATTTCAA 57.425 34.783 1.45 0.00 0.00 2.69
2802 2933 3.355378 TCAACTAAGATGTTGCCCCATG 58.645 45.455 0.00 0.00 44.83 3.66
2845 3027 6.537355 TCCCTGATTCAATATGAGTGATTCC 58.463 40.000 0.00 0.00 0.00 3.01
2857 3039 3.718956 CCCCTAAGTCTCCCTGATTCAAT 59.281 47.826 0.00 0.00 0.00 2.57
2858 3040 3.115390 CCCCTAAGTCTCCCTGATTCAA 58.885 50.000 0.00 0.00 0.00 2.69
2859 3041 2.629639 CCCCCTAAGTCTCCCTGATTCA 60.630 54.545 0.00 0.00 0.00 2.57
2860 3042 2.050918 CCCCCTAAGTCTCCCTGATTC 58.949 57.143 0.00 0.00 0.00 2.52
2863 3048 0.338814 GTCCCCCTAAGTCTCCCTGA 59.661 60.000 0.00 0.00 0.00 3.86
2864 3049 0.340208 AGTCCCCCTAAGTCTCCCTG 59.660 60.000 0.00 0.00 0.00 4.45
2872 3057 3.502356 GGAGTATCTCAGTCCCCCTAAG 58.498 54.545 0.00 0.00 40.51 2.18
2883 3068 7.979786 ATTTCTTTACAGAGGGAGTATCTCA 57.020 36.000 0.00 0.00 38.91 3.27
2889 3074 8.706521 GGTCTTATATTTCTTTACAGAGGGAGT 58.293 37.037 0.00 0.00 0.00 3.85
2890 3075 7.868415 CGGTCTTATATTTCTTTACAGAGGGAG 59.132 40.741 0.00 0.00 0.00 4.30
2891 3076 7.343833 ACGGTCTTATATTTCTTTACAGAGGGA 59.656 37.037 0.00 0.00 0.00 4.20
2892 3077 7.498443 ACGGTCTTATATTTCTTTACAGAGGG 58.502 38.462 0.00 0.00 0.00 4.30
2893 3078 8.943909 AACGGTCTTATATTTCTTTACAGAGG 57.056 34.615 0.00 0.00 0.00 3.69
2909 3094 9.236006 ACTACTTTAGTGATCTAAACGGTCTTA 57.764 33.333 0.00 0.00 40.05 2.10
2910 3095 8.120140 ACTACTTTAGTGATCTAAACGGTCTT 57.880 34.615 0.00 0.00 40.05 3.01
2911 3096 7.700022 ACTACTTTAGTGATCTAAACGGTCT 57.300 36.000 0.00 0.00 40.05 3.85
2941 3126 8.621286 CCTCCGTAAACAAATATAAGAGCATTT 58.379 33.333 0.00 0.00 0.00 2.32
2942 3127 7.228706 CCCTCCGTAAACAAATATAAGAGCATT 59.771 37.037 0.00 0.00 0.00 3.56
2943 3128 6.710744 CCCTCCGTAAACAAATATAAGAGCAT 59.289 38.462 0.00 0.00 0.00 3.79
2944 3129 6.053005 CCCTCCGTAAACAAATATAAGAGCA 58.947 40.000 0.00 0.00 0.00 4.26
2945 3130 6.285990 TCCCTCCGTAAACAAATATAAGAGC 58.714 40.000 0.00 0.00 0.00 4.09
2946 3131 7.498443 ACTCCCTCCGTAAACAAATATAAGAG 58.502 38.462 0.00 0.00 0.00 2.85
2947 3132 7.427989 ACTCCCTCCGTAAACAAATATAAGA 57.572 36.000 0.00 0.00 0.00 2.10
2948 3133 8.199449 TGTACTCCCTCCGTAAACAAATATAAG 58.801 37.037 0.00 0.00 0.00 1.73
2949 3134 8.076910 TGTACTCCCTCCGTAAACAAATATAA 57.923 34.615 0.00 0.00 0.00 0.98
2950 3135 7.560991 TCTGTACTCCCTCCGTAAACAAATATA 59.439 37.037 0.00 0.00 0.00 0.86
2951 3136 6.381994 TCTGTACTCCCTCCGTAAACAAATAT 59.618 38.462 0.00 0.00 0.00 1.28
2952 3137 5.716228 TCTGTACTCCCTCCGTAAACAAATA 59.284 40.000 0.00 0.00 0.00 1.40
2953 3138 4.529377 TCTGTACTCCCTCCGTAAACAAAT 59.471 41.667 0.00 0.00 0.00 2.32
2954 3139 3.896888 TCTGTACTCCCTCCGTAAACAAA 59.103 43.478 0.00 0.00 0.00 2.83
2955 3140 3.499338 TCTGTACTCCCTCCGTAAACAA 58.501 45.455 0.00 0.00 0.00 2.83
2956 3141 3.159213 TCTGTACTCCCTCCGTAAACA 57.841 47.619 0.00 0.00 0.00 2.83
2957 3142 4.732672 AATCTGTACTCCCTCCGTAAAC 57.267 45.455 0.00 0.00 0.00 2.01
2958 3143 5.954150 ACTTAATCTGTACTCCCTCCGTAAA 59.046 40.000 0.00 0.00 0.00 2.01
2959 3144 5.513233 ACTTAATCTGTACTCCCTCCGTAA 58.487 41.667 0.00 0.00 0.00 3.18
2960 3145 5.121380 ACTTAATCTGTACTCCCTCCGTA 57.879 43.478 0.00 0.00 0.00 4.02
2961 3146 3.978610 ACTTAATCTGTACTCCCTCCGT 58.021 45.455 0.00 0.00 0.00 4.69
2962 3147 4.519730 CCTACTTAATCTGTACTCCCTCCG 59.480 50.000 0.00 0.00 0.00 4.63
2963 3148 4.281435 GCCTACTTAATCTGTACTCCCTCC 59.719 50.000 0.00 0.00 0.00 4.30
2964 3149 4.894114 TGCCTACTTAATCTGTACTCCCTC 59.106 45.833 0.00 0.00 0.00 4.30
2965 3150 4.880164 TGCCTACTTAATCTGTACTCCCT 58.120 43.478 0.00 0.00 0.00 4.20
2966 3151 5.105064 TGTTGCCTACTTAATCTGTACTCCC 60.105 44.000 0.00 0.00 0.00 4.30
2967 3152 5.974108 TGTTGCCTACTTAATCTGTACTCC 58.026 41.667 0.00 0.00 0.00 3.85
2968 3153 8.494016 AATTGTTGCCTACTTAATCTGTACTC 57.506 34.615 0.00 0.00 0.00 2.59
2969 3154 8.863872 AAATTGTTGCCTACTTAATCTGTACT 57.136 30.769 0.00 0.00 0.00 2.73
2970 3155 8.947115 AGAAATTGTTGCCTACTTAATCTGTAC 58.053 33.333 0.00 0.00 0.00 2.90
2986 3171 8.633075 TGACTAAAGCAGAAAAGAAATTGTTG 57.367 30.769 0.00 0.00 0.00 3.33
2987 3172 9.822185 AATGACTAAAGCAGAAAAGAAATTGTT 57.178 25.926 0.00 0.00 0.00 2.83
2991 3176 9.071276 TCTGAATGACTAAAGCAGAAAAGAAAT 57.929 29.630 0.00 0.00 33.11 2.17
3017 3202 5.070685 ACCGAAAGAACCATTCTAGCTTTT 58.929 37.500 0.00 0.00 39.61 2.27
3020 3205 3.515901 AGACCGAAAGAACCATTCTAGCT 59.484 43.478 0.00 0.00 39.61 3.32
3059 3250 1.337703 CACATTCCACACCACCACAAG 59.662 52.381 0.00 0.00 0.00 3.16
3078 3270 1.601903 GTCGGTCACAAAGTTCATGCA 59.398 47.619 0.00 0.00 0.00 3.96
3187 3381 7.650903 GGAAAAATCATCATTGCTATCTGAACC 59.349 37.037 0.00 0.00 0.00 3.62
3213 3407 5.990996 ACTTGCCCATGTACATTTCAAAAAG 59.009 36.000 5.37 8.13 0.00 2.27
3539 3733 1.980765 TGTGGAGAAGGCAGACAATCT 59.019 47.619 0.00 0.00 0.00 2.40
3544 3738 3.550437 ACATATGTGGAGAAGGCAGAC 57.450 47.619 7.78 0.00 0.00 3.51
3625 3819 0.804544 TAAACTCTTCCGCGCCATCG 60.805 55.000 0.00 0.00 39.07 3.84
3672 3866 6.224420 ACAGCGACAGTTTATTTGAACTAC 57.776 37.500 0.00 0.00 37.76 2.73
3673 3867 6.854496 AACAGCGACAGTTTATTTGAACTA 57.146 33.333 0.00 0.00 37.76 2.24
3778 3972 0.749454 CTTCCAATGAAGGCCCTCCG 60.749 60.000 0.00 0.00 43.57 4.63
3780 3974 0.323725 TGCTTCCAATGAAGGCCCTC 60.324 55.000 0.00 0.00 46.68 4.30
3793 3987 2.496899 TCTCCAAATCTGGTGCTTCC 57.503 50.000 0.00 0.00 43.97 3.46
3829 4023 0.674895 AGACAGATGCGGCCTTGAAC 60.675 55.000 0.00 0.00 0.00 3.18
3872 4066 1.067295 AGTGGAACAGGGAGCAATGA 58.933 50.000 0.00 0.00 41.80 2.57
3934 4128 2.877097 TTAGGACTTCATGGCTTGCA 57.123 45.000 0.00 0.00 0.00 4.08
3939 4133 1.340991 TGGGCTTTAGGACTTCATGGC 60.341 52.381 0.00 0.00 0.00 4.40
4051 4245 1.002011 AAGGGAAAGAGCGGAAGGC 60.002 57.895 0.00 0.00 44.05 4.35
4057 4251 2.003301 GTAAGCTGAAGGGAAAGAGCG 58.997 52.381 0.00 0.00 36.52 5.03
4412 4606 7.277174 ACAAAAATCTCCAAAGTAGTGAAGG 57.723 36.000 0.00 0.00 0.00 3.46
4536 4738 6.638096 TTCAAGCAGATCTGTCAAATTTCA 57.362 33.333 23.38 0.00 0.00 2.69
4681 4966 5.541484 AGAAAAACTGCAAAATCTCCATCCT 59.459 36.000 0.00 0.00 0.00 3.24
4718 5005 5.799936 ACAAAGACACAAACAAAGACGAATG 59.200 36.000 0.00 0.00 0.00 2.67
4791 5078 5.106396 GCATGAGAACTGACATTTTAGTGCT 60.106 40.000 0.00 0.00 35.49 4.40
4833 5120 5.745312 TCAGTTTTCTCCATCTCAGCTTA 57.255 39.130 0.00 0.00 0.00 3.09
4839 5126 3.438434 GGTGCTTCAGTTTTCTCCATCTC 59.562 47.826 0.00 0.00 0.00 2.75
4840 5127 3.181440 TGGTGCTTCAGTTTTCTCCATCT 60.181 43.478 0.00 0.00 0.00 2.90
4872 5159 3.252215 TGCGACAAACCAAAGGAATACTG 59.748 43.478 0.00 0.00 0.00 2.74
4901 5188 8.679288 AAATTGAGCAAATAGATGTTTCTTCG 57.321 30.769 0.00 0.00 33.17 3.79
4946 5233 3.312421 TGGCATTCGCTTAATACTTCAGC 59.688 43.478 0.00 0.00 38.60 4.26
4947 5234 5.484173 TTGGCATTCGCTTAATACTTCAG 57.516 39.130 0.00 0.00 38.60 3.02
4958 5245 1.820519 ACACAATGATTGGCATTCGCT 59.179 42.857 10.27 0.00 45.23 4.93
4967 5254 7.964559 ACGATATCAAGTCAAACACAATGATTG 59.035 33.333 3.16 3.16 36.08 2.67
4975 5262 6.952935 AGAAGACGATATCAAGTCAAACAC 57.047 37.500 11.77 1.53 39.67 3.32
4991 5280 4.811024 TGCAAATAGGCTATCAAGAAGACG 59.189 41.667 7.63 0.00 34.04 4.18
5014 5303 3.185797 GCGTTCCAGACATTTAACGTTCT 59.814 43.478 2.82 0.00 44.79 3.01
5082 5371 9.982651 TTATTGGTATATCAGTAAGCAAGAGAC 57.017 33.333 0.00 0.00 34.47 3.36
5132 5421 6.698008 TCAAACATAATGGAGCATAAGTGG 57.302 37.500 0.00 0.00 0.00 4.00
5139 5428 6.071784 GCATCCATATCAAACATAATGGAGCA 60.072 38.462 8.68 0.00 40.93 4.26
5188 5479 3.443045 CACTGCGGCATGTTCCCC 61.443 66.667 1.75 0.00 0.00 4.81
5190 5481 2.918345 TTGCACTGCGGCATGTTCC 61.918 57.895 1.75 0.00 44.48 3.62
5192 5483 2.336088 GTTGCACTGCGGCATGTT 59.664 55.556 1.75 0.00 44.48 2.71
5194 5485 4.424566 GGGTTGCACTGCGGCATG 62.425 66.667 1.75 5.61 44.48 4.06
5210 5502 0.107654 GAAATGAGTCCCTGACCCGG 60.108 60.000 0.00 0.00 32.18 5.73
5212 5504 1.909302 TGAGAAATGAGTCCCTGACCC 59.091 52.381 0.00 0.00 32.18 4.46
5219 5511 5.877012 TGCTTCATTACTGAGAAATGAGTCC 59.123 40.000 0.00 0.00 42.58 3.85
5261 5553 5.050972 CCTTCTATACTTCGTTCGATTTGGC 60.051 44.000 0.00 0.00 0.00 4.52
5272 5564 3.738282 GCATGAGCACCTTCTATACTTCG 59.262 47.826 0.00 0.00 41.58 3.79
5293 5585 2.202479 GCCCTCGATTGCGTTTGC 60.202 61.111 0.00 0.00 43.20 3.68
5294 5586 1.154225 GTGCCCTCGATTGCGTTTG 60.154 57.895 2.38 0.00 38.98 2.93
5295 5587 2.677003 CGTGCCCTCGATTGCGTTT 61.677 57.895 2.38 0.00 38.98 3.60
5296 5588 3.118454 CGTGCCCTCGATTGCGTT 61.118 61.111 2.38 0.00 38.98 4.84
5300 5592 3.197790 CAGCCGTGCCCTCGATTG 61.198 66.667 0.00 0.00 0.00 2.67
5301 5593 3.376935 CTCAGCCGTGCCCTCGATT 62.377 63.158 0.00 0.00 0.00 3.34
5302 5594 3.842923 CTCAGCCGTGCCCTCGAT 61.843 66.667 0.00 0.00 0.00 3.59
5303 5595 3.931190 TACTCAGCCGTGCCCTCGA 62.931 63.158 0.00 0.00 0.00 4.04
5304 5596 3.449227 TACTCAGCCGTGCCCTCG 61.449 66.667 0.00 0.00 0.00 4.63
5305 5597 1.961180 ATGTACTCAGCCGTGCCCTC 61.961 60.000 0.00 0.00 0.00 4.30
5306 5598 1.990060 ATGTACTCAGCCGTGCCCT 60.990 57.895 0.00 0.00 0.00 5.19
5307 5599 1.815421 CATGTACTCAGCCGTGCCC 60.815 63.158 0.00 0.00 0.00 5.36
5308 5600 1.815421 CCATGTACTCAGCCGTGCC 60.815 63.158 0.00 0.00 0.00 5.01
5309 5601 0.391130 TTCCATGTACTCAGCCGTGC 60.391 55.000 0.00 0.00 0.00 5.34
5310 5602 3.832704 TTCCATGTACTCAGCCGTG 57.167 52.632 0.00 0.00 0.00 4.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.