Multiple sequence alignment - TraesCS3A01G108600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G108600 chr3A 100.000 2817 0 0 957 3773 74360028 74362844 0.000000e+00 5203.0
1 TraesCS3A01G108600 chr3A 100.000 559 0 0 1 559 74359072 74359630 0.000000e+00 1033.0
2 TraesCS3A01G108600 chr3D 92.957 2073 89 9 961 2979 64183206 64185275 0.000000e+00 2966.0
3 TraesCS3A01G108600 chr3D 84.545 550 40 14 3083 3602 64185274 64185808 1.560000e-138 503.0
4 TraesCS3A01G108600 chr3D 93.023 172 7 4 3604 3773 64186591 64186759 2.910000e-61 246.0
5 TraesCS3A01G108600 chr3D 92.248 129 6 4 2959 3085 230765770 230765644 2.990000e-41 180.0
6 TraesCS3A01G108600 chr3D 84.615 169 9 6 362 529 64182964 64183116 6.530000e-33 152.0
7 TraesCS3A01G108600 chr3B 91.121 2106 99 30 957 2975 106416399 106418503 0.000000e+00 2772.0
8 TraesCS3A01G108600 chr3B 83.485 551 44 13 3085 3605 106418508 106419041 1.590000e-128 470.0
9 TraesCS3A01G108600 chr3B 78.400 125 16 9 407 529 106416194 106416309 1.880000e-08 71.3
10 TraesCS3A01G108600 chr5D 82.114 246 38 5 1873 2113 42036157 42036401 4.940000e-49 206.0
11 TraesCS3A01G108600 chr5A 96.552 116 3 1 2970 3084 177604819 177604934 1.380000e-44 191.0
12 TraesCS3A01G108600 chr5A 96.491 114 4 0 2977 3090 522062290 522062403 4.980000e-44 189.0
13 TraesCS3A01G108600 chr5A 94.958 119 4 2 2969 3086 246293572 246293689 6.440000e-43 185.0
14 TraesCS3A01G108600 chr5A 94.167 120 6 1 2969 3087 601613495 601613376 8.330000e-42 182.0
15 TraesCS3A01G108600 chr7D 94.215 121 5 2 2975 3093 227507118 227507238 2.310000e-42 183.0
16 TraesCS3A01G108600 chr7A 94.872 117 5 1 2978 3094 50289324 50289209 8.330000e-42 182.0
17 TraesCS3A01G108600 chr5B 92.063 126 9 1 2972 3096 473290739 473290864 3.870000e-40 176.0
18 TraesCS3A01G108600 chr2A 90.370 135 12 1 2976 3109 183328348 183328482 3.870000e-40 176.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G108600 chr3A 74359072 74362844 3772 False 3118.000000 5203 100.000000 1 3773 2 chr3A.!!$F1 3772
1 TraesCS3A01G108600 chr3D 64182964 64186759 3795 False 966.750000 2966 88.785000 362 3773 4 chr3D.!!$F1 3411
2 TraesCS3A01G108600 chr3B 106416194 106419041 2847 False 1104.433333 2772 84.335333 407 3605 3 chr3B.!!$F1 3198

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
137 138 0.107703 TCCCATCCGCACTCAATGTC 60.108 55.0 0.0 0.0 0.0 3.06 F
979 989 0.174389 CTCATCTCACACCTCCCACG 59.826 60.0 0.0 0.0 0.0 4.94 F
1174 1208 0.188834 CCTTCCTCCCGTCCCTCTAT 59.811 60.0 0.0 0.0 0.0 1.98 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1888 1933 0.179000 GCCTGTCTATCCCCACAGTG 59.821 60.0 0.00 0.00 38.74 3.66 R
2131 2176 0.322975 GGCTGTTCTTCTGGCAGAGA 59.677 55.0 17.91 13.96 39.60 3.10 R
3066 3166 0.038744 ACTACTCCCTCCGTTCGGAA 59.961 55.0 14.79 0.04 33.41 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.838339 TGACCAACCACATAAAACATTTTAATT 57.162 25.926 1.14 0.00 36.35 1.40
42 43 9.981114 ACATTTTAATTTTCTCAGGTACTTTGG 57.019 29.630 0.00 0.00 34.60 3.28
43 44 8.925700 CATTTTAATTTTCTCAGGTACTTTGGC 58.074 33.333 0.00 0.00 34.60 4.52
44 45 7.833285 TTTAATTTTCTCAGGTACTTTGGCT 57.167 32.000 0.00 0.00 34.60 4.75
45 46 7.833285 TTAATTTTCTCAGGTACTTTGGCTT 57.167 32.000 0.00 0.00 34.60 4.35
46 47 6.731292 AATTTTCTCAGGTACTTTGGCTTT 57.269 33.333 0.00 0.00 34.60 3.51
47 48 5.767816 TTTTCTCAGGTACTTTGGCTTTC 57.232 39.130 0.00 0.00 34.60 2.62
48 49 3.418684 TCTCAGGTACTTTGGCTTTCC 57.581 47.619 0.00 0.00 34.60 3.13
49 50 2.708861 TCTCAGGTACTTTGGCTTTCCA 59.291 45.455 0.00 0.00 37.23 3.53
50 51 2.814336 CTCAGGTACTTTGGCTTTCCAC 59.186 50.000 0.00 0.00 38.62 4.02
51 52 1.535462 CAGGTACTTTGGCTTTCCACG 59.465 52.381 0.00 0.00 38.62 4.94
52 53 0.879090 GGTACTTTGGCTTTCCACGG 59.121 55.000 0.00 0.00 43.33 4.94
53 54 1.543871 GGTACTTTGGCTTTCCACGGA 60.544 52.381 0.00 0.00 43.33 4.69
54 55 2.433436 GTACTTTGGCTTTCCACGGAT 58.567 47.619 0.00 0.00 43.33 4.18
55 56 2.871096 ACTTTGGCTTTCCACGGATA 57.129 45.000 0.00 0.00 43.33 2.59
56 57 3.366052 ACTTTGGCTTTCCACGGATAT 57.634 42.857 0.00 0.00 43.33 1.63
57 58 3.697166 ACTTTGGCTTTCCACGGATATT 58.303 40.909 0.00 0.00 43.33 1.28
58 59 4.086457 ACTTTGGCTTTCCACGGATATTT 58.914 39.130 0.00 0.00 43.33 1.40
59 60 4.157840 ACTTTGGCTTTCCACGGATATTTC 59.842 41.667 0.00 0.00 43.33 2.17
60 61 3.644966 TGGCTTTCCACGGATATTTCT 57.355 42.857 0.00 0.00 37.47 2.52
61 62 4.764050 TGGCTTTCCACGGATATTTCTA 57.236 40.909 0.00 0.00 37.47 2.10
62 63 5.304686 TGGCTTTCCACGGATATTTCTAT 57.695 39.130 0.00 0.00 37.47 1.98
63 64 5.063204 TGGCTTTCCACGGATATTTCTATG 58.937 41.667 0.00 0.00 37.47 2.23
64 65 4.455877 GGCTTTCCACGGATATTTCTATGG 59.544 45.833 0.00 0.00 0.00 2.74
65 66 5.305585 GCTTTCCACGGATATTTCTATGGA 58.694 41.667 5.32 5.32 35.41 3.41
66 67 5.940470 GCTTTCCACGGATATTTCTATGGAT 59.060 40.000 8.82 0.00 36.42 3.41
67 68 7.103641 GCTTTCCACGGATATTTCTATGGATA 58.896 38.462 8.82 5.20 36.42 2.59
68 69 7.278868 GCTTTCCACGGATATTTCTATGGATAG 59.721 40.741 15.14 15.14 37.62 2.08
69 70 7.792364 TTCCACGGATATTTCTATGGATAGT 57.208 36.000 8.82 0.00 36.42 2.12
70 71 7.792364 TCCACGGATATTTCTATGGATAGTT 57.208 36.000 5.32 0.00 33.56 2.24
71 72 8.888836 TCCACGGATATTTCTATGGATAGTTA 57.111 34.615 5.32 0.00 33.56 2.24
72 73 8.746530 TCCACGGATATTTCTATGGATAGTTAC 58.253 37.037 5.32 0.00 33.56 2.50
73 74 8.528643 CCACGGATATTTCTATGGATAGTTACA 58.471 37.037 0.00 0.00 31.94 2.41
74 75 9.355215 CACGGATATTTCTATGGATAGTTACAC 57.645 37.037 0.00 0.00 0.00 2.90
75 76 8.529476 ACGGATATTTCTATGGATAGTTACACC 58.471 37.037 0.00 0.00 0.00 4.16
76 77 7.980099 CGGATATTTCTATGGATAGTTACACCC 59.020 40.741 0.00 0.00 0.00 4.61
77 78 8.822805 GGATATTTCTATGGATAGTTACACCCA 58.177 37.037 0.00 0.00 0.00 4.51
80 81 7.684317 TTTCTATGGATAGTTACACCCATCA 57.316 36.000 6.49 0.00 39.80 3.07
81 82 7.872061 TTCTATGGATAGTTACACCCATCAT 57.128 36.000 6.49 0.00 39.80 2.45
82 83 7.482169 TCTATGGATAGTTACACCCATCATC 57.518 40.000 6.49 0.00 39.80 2.92
83 84 7.016296 TCTATGGATAGTTACACCCATCATCA 58.984 38.462 6.49 0.00 39.80 3.07
84 85 5.966853 TGGATAGTTACACCCATCATCAA 57.033 39.130 0.00 0.00 0.00 2.57
85 86 6.514012 TGGATAGTTACACCCATCATCAAT 57.486 37.500 0.00 0.00 0.00 2.57
86 87 6.533730 TGGATAGTTACACCCATCATCAATC 58.466 40.000 0.00 0.00 0.00 2.67
87 88 6.101005 TGGATAGTTACACCCATCATCAATCA 59.899 38.462 0.00 0.00 0.00 2.57
88 89 7.170965 GGATAGTTACACCCATCATCAATCAT 58.829 38.462 0.00 0.00 0.00 2.45
89 90 7.667219 GGATAGTTACACCCATCATCAATCATT 59.333 37.037 0.00 0.00 0.00 2.57
90 91 9.071276 GATAGTTACACCCATCATCAATCATTT 57.929 33.333 0.00 0.00 0.00 2.32
91 92 7.722949 AGTTACACCCATCATCAATCATTTT 57.277 32.000 0.00 0.00 0.00 1.82
92 93 7.775120 AGTTACACCCATCATCAATCATTTTC 58.225 34.615 0.00 0.00 0.00 2.29
93 94 5.603170 ACACCCATCATCAATCATTTTCC 57.397 39.130 0.00 0.00 0.00 3.13
94 95 5.274822 ACACCCATCATCAATCATTTTCCT 58.725 37.500 0.00 0.00 0.00 3.36
95 96 6.434302 ACACCCATCATCAATCATTTTCCTA 58.566 36.000 0.00 0.00 0.00 2.94
96 97 7.071273 ACACCCATCATCAATCATTTTCCTAT 58.929 34.615 0.00 0.00 0.00 2.57
97 98 8.226810 ACACCCATCATCAATCATTTTCCTATA 58.773 33.333 0.00 0.00 0.00 1.31
98 99 9.251440 CACCCATCATCAATCATTTTCCTATAT 57.749 33.333 0.00 0.00 0.00 0.86
121 122 5.774498 AGTGACTTGACAAAGAATTTCCC 57.226 39.130 0.00 0.00 35.03 3.97
122 123 5.200483 AGTGACTTGACAAAGAATTTCCCA 58.800 37.500 0.00 0.00 35.03 4.37
123 124 5.835280 AGTGACTTGACAAAGAATTTCCCAT 59.165 36.000 0.00 0.00 35.03 4.00
124 125 6.015940 AGTGACTTGACAAAGAATTTCCCATC 60.016 38.462 0.00 0.00 35.03 3.51
125 126 5.243730 TGACTTGACAAAGAATTTCCCATCC 59.756 40.000 0.00 0.00 35.03 3.51
126 127 4.218417 ACTTGACAAAGAATTTCCCATCCG 59.782 41.667 0.00 0.00 35.03 4.18
127 128 2.491693 TGACAAAGAATTTCCCATCCGC 59.508 45.455 0.00 0.00 35.03 5.54
128 129 2.491693 GACAAAGAATTTCCCATCCGCA 59.508 45.455 0.00 0.00 35.03 5.69
129 130 2.231235 ACAAAGAATTTCCCATCCGCAC 59.769 45.455 0.00 0.00 35.03 5.34
130 131 2.493278 CAAAGAATTTCCCATCCGCACT 59.507 45.455 0.00 0.00 35.03 4.40
131 132 2.044123 AGAATTTCCCATCCGCACTC 57.956 50.000 0.00 0.00 0.00 3.51
132 133 1.281867 AGAATTTCCCATCCGCACTCA 59.718 47.619 0.00 0.00 0.00 3.41
133 134 2.091541 GAATTTCCCATCCGCACTCAA 58.908 47.619 0.00 0.00 0.00 3.02
134 135 2.442236 ATTTCCCATCCGCACTCAAT 57.558 45.000 0.00 0.00 0.00 2.57
135 136 1.462616 TTTCCCATCCGCACTCAATG 58.537 50.000 0.00 0.00 0.00 2.82
136 137 0.327924 TTCCCATCCGCACTCAATGT 59.672 50.000 0.00 0.00 0.00 2.71
137 138 0.107703 TCCCATCCGCACTCAATGTC 60.108 55.000 0.00 0.00 0.00 3.06
138 139 1.097547 CCCATCCGCACTCAATGTCC 61.098 60.000 0.00 0.00 0.00 4.02
139 140 0.392863 CCATCCGCACTCAATGTCCA 60.393 55.000 0.00 0.00 0.00 4.02
140 141 1.671979 CATCCGCACTCAATGTCCAT 58.328 50.000 0.00 0.00 0.00 3.41
141 142 2.485302 CCATCCGCACTCAATGTCCATA 60.485 50.000 0.00 0.00 0.00 2.74
142 143 3.405831 CATCCGCACTCAATGTCCATAT 58.594 45.455 0.00 0.00 0.00 1.78
143 144 4.563374 CCATCCGCACTCAATGTCCATATA 60.563 45.833 0.00 0.00 0.00 0.86
144 145 4.681074 TCCGCACTCAATGTCCATATAA 57.319 40.909 0.00 0.00 0.00 0.98
145 146 4.377021 TCCGCACTCAATGTCCATATAAC 58.623 43.478 0.00 0.00 0.00 1.89
146 147 4.100963 TCCGCACTCAATGTCCATATAACT 59.899 41.667 0.00 0.00 0.00 2.24
147 148 4.816385 CCGCACTCAATGTCCATATAACTT 59.184 41.667 0.00 0.00 0.00 2.66
148 149 5.277490 CCGCACTCAATGTCCATATAACTTG 60.277 44.000 0.00 0.00 0.00 3.16
149 150 5.277490 CGCACTCAATGTCCATATAACTTGG 60.277 44.000 0.00 0.00 35.45 3.61
150 151 5.590259 GCACTCAATGTCCATATAACTTGGT 59.410 40.000 0.00 0.00 35.64 3.67
151 152 6.095440 GCACTCAATGTCCATATAACTTGGTT 59.905 38.462 0.00 0.00 35.64 3.67
152 153 7.362920 GCACTCAATGTCCATATAACTTGGTTT 60.363 37.037 0.00 0.00 35.64 3.27
153 154 8.184192 CACTCAATGTCCATATAACTTGGTTTC 58.816 37.037 0.00 0.00 35.64 2.78
154 155 8.109634 ACTCAATGTCCATATAACTTGGTTTCT 58.890 33.333 0.00 0.00 35.64 2.52
155 156 9.613428 CTCAATGTCCATATAACTTGGTTTCTA 57.387 33.333 0.00 0.00 35.64 2.10
160 161 9.213777 TGTCCATATAACTTGGTTTCTATCTCT 57.786 33.333 0.00 0.00 35.64 3.10
161 162 9.699703 GTCCATATAACTTGGTTTCTATCTCTC 57.300 37.037 0.00 0.00 35.64 3.20
162 163 8.871125 TCCATATAACTTGGTTTCTATCTCTCC 58.129 37.037 0.00 0.00 35.64 3.71
163 164 8.097662 CCATATAACTTGGTTTCTATCTCTCCC 58.902 40.741 0.00 0.00 0.00 4.30
164 165 4.846168 AACTTGGTTTCTATCTCTCCCC 57.154 45.455 0.00 0.00 0.00 4.81
165 166 3.803340 ACTTGGTTTCTATCTCTCCCCA 58.197 45.455 0.00 0.00 0.00 4.96
166 167 4.375313 ACTTGGTTTCTATCTCTCCCCAT 58.625 43.478 0.00 0.00 0.00 4.00
167 168 4.790790 ACTTGGTTTCTATCTCTCCCCATT 59.209 41.667 0.00 0.00 0.00 3.16
168 169 5.254032 ACTTGGTTTCTATCTCTCCCCATTT 59.746 40.000 0.00 0.00 0.00 2.32
169 170 5.796502 TGGTTTCTATCTCTCCCCATTTT 57.203 39.130 0.00 0.00 0.00 1.82
170 171 6.901615 TGGTTTCTATCTCTCCCCATTTTA 57.098 37.500 0.00 0.00 0.00 1.52
171 172 7.278724 TGGTTTCTATCTCTCCCCATTTTAA 57.721 36.000 0.00 0.00 0.00 1.52
172 173 7.116736 TGGTTTCTATCTCTCCCCATTTTAAC 58.883 38.462 0.00 0.00 0.00 2.01
173 174 7.036863 TGGTTTCTATCTCTCCCCATTTTAACT 60.037 37.037 0.00 0.00 0.00 2.24
174 175 8.491958 GGTTTCTATCTCTCCCCATTTTAACTA 58.508 37.037 0.00 0.00 0.00 2.24
180 181 8.753497 ATCTCTCCCCATTTTAACTATTTCAC 57.247 34.615 0.00 0.00 0.00 3.18
181 182 7.695055 TCTCTCCCCATTTTAACTATTTCACA 58.305 34.615 0.00 0.00 0.00 3.58
182 183 8.336235 TCTCTCCCCATTTTAACTATTTCACAT 58.664 33.333 0.00 0.00 0.00 3.21
183 184 8.519799 TCTCCCCATTTTAACTATTTCACATC 57.480 34.615 0.00 0.00 0.00 3.06
184 185 8.336235 TCTCCCCATTTTAACTATTTCACATCT 58.664 33.333 0.00 0.00 0.00 2.90
185 186 9.627123 CTCCCCATTTTAACTATTTCACATCTA 57.373 33.333 0.00 0.00 0.00 1.98
186 187 9.403583 TCCCCATTTTAACTATTTCACATCTAC 57.596 33.333 0.00 0.00 0.00 2.59
187 188 9.408648 CCCCATTTTAACTATTTCACATCTACT 57.591 33.333 0.00 0.00 0.00 2.57
201 202 8.948631 TTCACATCTACTATTCAGAATGTTCC 57.051 34.615 5.85 0.00 37.40 3.62
202 203 8.078060 TCACATCTACTATTCAGAATGTTCCA 57.922 34.615 5.85 0.00 37.40 3.53
203 204 8.708378 TCACATCTACTATTCAGAATGTTCCAT 58.292 33.333 5.85 0.00 37.40 3.41
204 205 9.987272 CACATCTACTATTCAGAATGTTCCATA 57.013 33.333 5.85 0.00 37.40 2.74
214 215 9.965902 ATTCAGAATGTTCCATAGTTTTAGAGT 57.034 29.630 0.00 0.00 37.40 3.24
215 216 9.793259 TTCAGAATGTTCCATAGTTTTAGAGTT 57.207 29.630 0.00 0.00 37.40 3.01
216 217 9.793259 TCAGAATGTTCCATAGTTTTAGAGTTT 57.207 29.630 0.00 0.00 37.40 2.66
218 219 9.793259 AGAATGTTCCATAGTTTTAGAGTTTCA 57.207 29.630 0.00 0.00 0.00 2.69
219 220 9.827411 GAATGTTCCATAGTTTTAGAGTTTCAC 57.173 33.333 0.00 0.00 0.00 3.18
220 221 7.739498 TGTTCCATAGTTTTAGAGTTTCACC 57.261 36.000 0.00 0.00 0.00 4.02
221 222 7.284074 TGTTCCATAGTTTTAGAGTTTCACCA 58.716 34.615 0.00 0.00 0.00 4.17
222 223 7.942341 TGTTCCATAGTTTTAGAGTTTCACCAT 59.058 33.333 0.00 0.00 0.00 3.55
223 224 7.921786 TCCATAGTTTTAGAGTTTCACCATG 57.078 36.000 0.00 0.00 0.00 3.66
224 225 6.884295 TCCATAGTTTTAGAGTTTCACCATGG 59.116 38.462 11.19 11.19 0.00 3.66
225 226 6.884295 CCATAGTTTTAGAGTTTCACCATGGA 59.116 38.462 21.47 0.00 31.70 3.41
226 227 7.066284 CCATAGTTTTAGAGTTTCACCATGGAG 59.934 40.741 21.47 11.61 31.70 3.86
227 228 5.941788 AGTTTTAGAGTTTCACCATGGAGT 58.058 37.500 21.47 0.00 0.00 3.85
228 229 5.765182 AGTTTTAGAGTTTCACCATGGAGTG 59.235 40.000 21.47 7.48 39.20 3.51
229 230 4.974645 TTAGAGTTTCACCATGGAGTGT 57.025 40.909 21.47 0.00 38.91 3.55
230 231 3.864789 AGAGTTTCACCATGGAGTGTT 57.135 42.857 21.47 0.00 38.91 3.32
231 232 3.744660 AGAGTTTCACCATGGAGTGTTC 58.255 45.455 21.47 8.62 38.91 3.18
232 233 3.392616 AGAGTTTCACCATGGAGTGTTCT 59.607 43.478 21.47 10.78 38.91 3.01
233 234 3.744660 AGTTTCACCATGGAGTGTTCTC 58.255 45.455 21.47 1.01 38.91 2.87
247 248 4.895961 AGTGTTCTCCTACAAGTAAAGCC 58.104 43.478 0.00 0.00 0.00 4.35
248 249 4.001652 GTGTTCTCCTACAAGTAAAGCCC 58.998 47.826 0.00 0.00 0.00 5.19
249 250 3.008704 TGTTCTCCTACAAGTAAAGCCCC 59.991 47.826 0.00 0.00 0.00 5.80
250 251 3.200958 TCTCCTACAAGTAAAGCCCCT 57.799 47.619 0.00 0.00 0.00 4.79
251 252 3.105283 TCTCCTACAAGTAAAGCCCCTC 58.895 50.000 0.00 0.00 0.00 4.30
252 253 2.170817 CTCCTACAAGTAAAGCCCCTCC 59.829 54.545 0.00 0.00 0.00 4.30
253 254 1.913419 CCTACAAGTAAAGCCCCTCCA 59.087 52.381 0.00 0.00 0.00 3.86
254 255 2.355818 CCTACAAGTAAAGCCCCTCCAC 60.356 54.545 0.00 0.00 0.00 4.02
255 256 0.404426 ACAAGTAAAGCCCCTCCACC 59.596 55.000 0.00 0.00 0.00 4.61
256 257 0.323451 CAAGTAAAGCCCCTCCACCC 60.323 60.000 0.00 0.00 0.00 4.61
257 258 1.506907 AAGTAAAGCCCCTCCACCCC 61.507 60.000 0.00 0.00 0.00 4.95
258 259 2.211575 TAAAGCCCCTCCACCCCA 59.788 61.111 0.00 0.00 0.00 4.96
259 260 1.466386 TAAAGCCCCTCCACCCCAA 60.466 57.895 0.00 0.00 0.00 4.12
260 261 1.795951 TAAAGCCCCTCCACCCCAAC 61.796 60.000 0.00 0.00 0.00 3.77
261 262 4.617595 AGCCCCTCCACCCCAACT 62.618 66.667 0.00 0.00 0.00 3.16
262 263 4.366684 GCCCCTCCACCCCAACTG 62.367 72.222 0.00 0.00 0.00 3.16
263 264 2.531685 CCCCTCCACCCCAACTGA 60.532 66.667 0.00 0.00 0.00 3.41
264 265 2.160171 CCCCTCCACCCCAACTGAA 61.160 63.158 0.00 0.00 0.00 3.02
265 266 1.509548 CCCCTCCACCCCAACTGAAT 61.510 60.000 0.00 0.00 0.00 2.57
266 267 0.323725 CCCTCCACCCCAACTGAATG 60.324 60.000 0.00 0.00 0.00 2.67
267 268 0.323725 CCTCCACCCCAACTGAATGG 60.324 60.000 0.00 0.00 40.35 3.16
268 269 0.967380 CTCCACCCCAACTGAATGGC 60.967 60.000 0.00 0.00 39.26 4.40
269 270 1.984026 CCACCCCAACTGAATGGCC 60.984 63.158 0.00 0.00 39.26 5.36
270 271 1.077265 CACCCCAACTGAATGGCCT 59.923 57.895 3.32 0.00 39.26 5.19
271 272 0.967380 CACCCCAACTGAATGGCCTC 60.967 60.000 3.32 0.00 39.26 4.70
272 273 1.383799 CCCCAACTGAATGGCCTCA 59.616 57.895 3.32 0.00 39.26 3.86
273 274 0.682209 CCCCAACTGAATGGCCTCAG 60.682 60.000 18.11 18.11 46.94 3.35
274 275 1.318158 CCCAACTGAATGGCCTCAGC 61.318 60.000 19.31 0.68 45.72 4.26
289 290 5.869753 GCCTCAGCCACAGTAATATTATG 57.130 43.478 0.00 1.67 0.00 1.90
290 291 5.551233 GCCTCAGCCACAGTAATATTATGA 58.449 41.667 0.00 0.00 0.00 2.15
291 292 5.409826 GCCTCAGCCACAGTAATATTATGAC 59.590 44.000 0.00 0.00 0.00 3.06
292 293 6.742644 GCCTCAGCCACAGTAATATTATGACT 60.743 42.308 0.00 0.00 0.00 3.41
293 294 7.525526 GCCTCAGCCACAGTAATATTATGACTA 60.526 40.741 0.00 0.00 0.00 2.59
294 295 8.367911 CCTCAGCCACAGTAATATTATGACTAA 58.632 37.037 0.00 0.00 0.00 2.24
295 296 9.764363 CTCAGCCACAGTAATATTATGACTAAA 57.236 33.333 0.00 0.00 0.00 1.85
298 299 9.899661 AGCCACAGTAATATTATGACTAAAACA 57.100 29.630 0.00 0.00 0.00 2.83
313 314 8.934023 TGACTAAAACAGGGATTGTAAAATCT 57.066 30.769 5.61 0.00 39.73 2.40
314 315 9.362151 TGACTAAAACAGGGATTGTAAAATCTT 57.638 29.630 5.61 0.00 39.73 2.40
315 316 9.626045 GACTAAAACAGGGATTGTAAAATCTTG 57.374 33.333 5.61 7.21 39.73 3.02
316 317 8.585018 ACTAAAACAGGGATTGTAAAATCTTGG 58.415 33.333 5.61 0.00 39.73 3.61
317 318 6.358974 AAACAGGGATTGTAAAATCTTGGG 57.641 37.500 5.61 0.00 39.73 4.12
318 319 5.010708 ACAGGGATTGTAAAATCTTGGGT 57.989 39.130 5.61 0.00 38.56 4.51
319 320 6.147437 ACAGGGATTGTAAAATCTTGGGTA 57.853 37.500 5.61 0.00 38.56 3.69
320 321 6.557568 ACAGGGATTGTAAAATCTTGGGTAA 58.442 36.000 5.61 0.00 38.56 2.85
321 322 6.663523 ACAGGGATTGTAAAATCTTGGGTAAG 59.336 38.462 5.61 0.00 38.56 2.34
322 323 5.656859 AGGGATTGTAAAATCTTGGGTAAGC 59.343 40.000 5.61 0.00 33.82 3.09
323 324 5.420739 GGGATTGTAAAATCTTGGGTAAGCA 59.579 40.000 5.61 0.00 33.82 3.91
324 325 6.098266 GGGATTGTAAAATCTTGGGTAAGCAT 59.902 38.462 5.61 0.00 33.82 3.79
325 326 7.203218 GGATTGTAAAATCTTGGGTAAGCATC 58.797 38.462 5.61 0.00 33.82 3.91
326 327 7.068716 GGATTGTAAAATCTTGGGTAAGCATCT 59.931 37.037 5.61 0.00 33.82 2.90
327 328 7.775053 TTGTAAAATCTTGGGTAAGCATCTT 57.225 32.000 0.00 0.00 33.82 2.40
328 329 7.775053 TGTAAAATCTTGGGTAAGCATCTTT 57.225 32.000 0.00 0.00 33.82 2.52
329 330 8.871629 TGTAAAATCTTGGGTAAGCATCTTTA 57.128 30.769 0.00 0.00 33.82 1.85
330 331 9.303116 TGTAAAATCTTGGGTAAGCATCTTTAA 57.697 29.630 0.00 0.00 33.82 1.52
331 332 9.788960 GTAAAATCTTGGGTAAGCATCTTTAAG 57.211 33.333 0.00 0.00 33.82 1.85
332 333 8.650143 AAAATCTTGGGTAAGCATCTTTAAGA 57.350 30.769 0.00 0.00 33.82 2.10
333 334 7.872113 AATCTTGGGTAAGCATCTTTAAGAG 57.128 36.000 0.03 0.00 33.82 2.85
334 335 5.186198 TCTTGGGTAAGCATCTTTAAGAGC 58.814 41.667 0.03 4.77 33.82 4.09
335 336 4.844349 TGGGTAAGCATCTTTAAGAGCT 57.156 40.909 11.27 11.27 39.37 4.09
337 338 5.570320 TGGGTAAGCATCTTTAAGAGCTTT 58.430 37.500 24.80 15.12 44.22 3.51
338 339 6.010219 TGGGTAAGCATCTTTAAGAGCTTTT 58.990 36.000 24.80 12.73 44.22 2.27
339 340 6.493458 TGGGTAAGCATCTTTAAGAGCTTTTT 59.507 34.615 24.80 12.25 44.22 1.94
379 380 2.746277 GCCGTCTGTCGCCCATTT 60.746 61.111 0.00 0.00 38.35 2.32
380 381 2.750888 GCCGTCTGTCGCCCATTTC 61.751 63.158 0.00 0.00 38.35 2.17
387 388 1.270550 CTGTCGCCCATTTCTTTTGCT 59.729 47.619 0.00 0.00 0.00 3.91
393 394 0.602562 CCATTTCTTTTGCTCGCCCA 59.397 50.000 0.00 0.00 0.00 5.36
439 441 1.838913 CCACCAACGTTCTTTTGCTG 58.161 50.000 0.00 0.00 0.00 4.41
446 448 1.367471 GTTCTTTTGCTGGGTGGCC 59.633 57.895 0.00 0.00 0.00 5.36
447 449 1.115326 GTTCTTTTGCTGGGTGGCCT 61.115 55.000 3.32 0.00 0.00 5.19
448 450 0.398381 TTCTTTTGCTGGGTGGCCTT 60.398 50.000 3.32 0.00 0.00 4.35
449 451 1.114722 TCTTTTGCTGGGTGGCCTTG 61.115 55.000 3.32 0.00 0.00 3.61
450 452 2.720358 CTTTTGCTGGGTGGCCTTGC 62.720 60.000 3.32 1.51 0.00 4.01
477 479 1.270839 TGGCTTCTTCCTCTCCAAACG 60.271 52.381 0.00 0.00 0.00 3.60
484 494 2.048222 CTCTCCAAACGCCAGCGA 60.048 61.111 20.32 0.00 42.83 4.93
512 522 5.248834 CGCAAATTTTTCGAAAACGGAAAA 58.751 33.333 22.41 7.81 40.52 2.29
979 989 0.174389 CTCATCTCACACCTCCCACG 59.826 60.000 0.00 0.00 0.00 4.94
989 999 4.838152 CTCCCACGCCATCCACCG 62.838 72.222 0.00 0.00 0.00 4.94
992 1002 4.175337 CCACGCCATCCACCGGAT 62.175 66.667 9.46 0.00 44.21 4.18
1087 1121 2.202987 GTGCAGGCCATCCTCTCG 60.203 66.667 5.01 0.00 41.93 4.04
1174 1208 0.188834 CCTTCCTCCCGTCCCTCTAT 59.811 60.000 0.00 0.00 0.00 1.98
1436 1473 1.984570 CCCAACCTCGAGGAGCTGA 60.985 63.158 37.69 0.00 38.94 4.26
1516 1553 4.933064 CTGGAGATCGTCGGCGCC 62.933 72.222 19.07 19.07 38.14 6.53
1621 1658 3.901797 CTCCGTGTTCCTGGCCACC 62.902 68.421 0.00 0.00 0.00 4.61
1802 1839 1.624336 TACGCACTGTACTGGAACCT 58.376 50.000 4.66 0.00 0.00 3.50
1842 1887 4.946784 AGGCAGTTATCATTCGTTTCAC 57.053 40.909 0.00 0.00 0.00 3.18
1888 1933 3.084786 CAATCTTTCAGGGAGGGTGAAC 58.915 50.000 0.00 0.00 33.63 3.18
1894 1939 0.250467 CAGGGAGGGTGAACACTGTG 60.250 60.000 6.19 6.19 33.46 3.66
1916 1961 2.370647 GATAGACAGGCTCCCGGTGC 62.371 65.000 0.00 4.14 30.91 5.01
2029 2074 1.733399 GGTCGAGTTCTGCGGTGAC 60.733 63.158 0.00 0.00 0.00 3.67
2140 2185 0.601046 TGTTTGCGTCTCTCTGCCAG 60.601 55.000 0.00 0.00 0.00 4.85
2185 2230 7.062371 GTGCGTCATATCCTACTGATTATCAAC 59.938 40.741 0.00 0.00 34.76 3.18
2206 2251 0.169009 GCATCCTTTCACTTCACGCC 59.831 55.000 0.00 0.00 0.00 5.68
2207 2252 1.813513 CATCCTTTCACTTCACGCCT 58.186 50.000 0.00 0.00 0.00 5.52
2235 2280 3.195396 TGGCATGGCTAATTTGTTTCTCC 59.805 43.478 21.08 0.00 0.00 3.71
2486 2532 2.139118 GAGTGCGGATTGAATAGAGGC 58.861 52.381 0.00 0.00 0.00 4.70
2515 2561 1.980772 ATGGCTCTGTGCTTTGGCC 60.981 57.895 0.00 0.00 42.39 5.36
2516 2562 2.598394 GGCTCTGTGCTTTGGCCA 60.598 61.111 0.00 0.00 42.08 5.36
2520 2600 0.963962 CTCTGTGCTTTGGCCATGTT 59.036 50.000 6.09 0.00 37.74 2.71
2580 2660 5.119898 TGCTGTTTTGTTTGTCATTGTTCAC 59.880 36.000 0.00 0.00 0.00 3.18
2724 2804 2.415090 GCTCCTGCAACAGCAACTTATG 60.415 50.000 10.95 0.00 37.91 1.90
2774 2859 9.623000 CATCCAATATAGCCTTGATTGATATGA 57.377 33.333 0.00 0.00 33.28 2.15
2801 2891 5.131067 AGTGTTGATGATCTCAATGGGATG 58.869 41.667 0.00 0.00 45.36 3.51
2804 2894 3.483421 TGATGATCTCAATGGGATGTGC 58.517 45.455 0.00 0.00 0.00 4.57
2861 2951 6.635030 AGAACCACCAATAGTTTCTGAAAC 57.365 37.500 22.40 22.40 41.69 2.78
2875 2965 2.158813 TCTGAAACACCACCTGACTTCC 60.159 50.000 0.00 0.00 0.00 3.46
2876 2966 1.562008 TGAAACACCACCTGACTTCCA 59.438 47.619 0.00 0.00 0.00 3.53
2917 3017 4.700213 GTGTTTGCACCCTAGTTGATATGT 59.300 41.667 0.00 0.00 39.61 2.29
2955 3055 3.379372 AGTTGATGTGGACATTGCTATGC 59.621 43.478 8.11 1.51 36.57 3.14
2965 3065 7.147863 TGTGGACATTGCTATGCTTGATAAATT 60.148 33.333 8.11 0.00 35.03 1.82
2988 3088 8.840200 ATTGTGATAATATATACTCCCTCCGT 57.160 34.615 0.00 0.00 0.00 4.69
2989 3089 8.660295 TTGTGATAATATATACTCCCTCCGTT 57.340 34.615 0.00 0.00 0.00 4.44
2990 3090 8.289939 TGTGATAATATATACTCCCTCCGTTC 57.710 38.462 0.00 0.00 0.00 3.95
2991 3091 7.066645 TGTGATAATATATACTCCCTCCGTTCG 59.933 40.741 0.00 0.00 0.00 3.95
2992 3092 6.544931 TGATAATATATACTCCCTCCGTTCGG 59.455 42.308 4.74 4.74 0.00 4.30
2993 3093 2.965671 ATATACTCCCTCCGTTCGGA 57.034 50.000 13.34 13.34 0.00 4.55
2994 3094 2.734755 TATACTCCCTCCGTTCGGAA 57.265 50.000 14.79 0.00 33.41 4.30
2995 3095 2.083628 ATACTCCCTCCGTTCGGAAT 57.916 50.000 14.79 2.14 33.41 3.01
2996 3096 1.856629 TACTCCCTCCGTTCGGAATT 58.143 50.000 14.79 0.00 33.41 2.17
2997 3097 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
2998 3098 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
2999 3099 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
3000 3100 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
3001 3101 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
3002 3102 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
3003 3103 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
3004 3104 3.368116 CCTCCGTTCGGAATTACTTGTCT 60.368 47.826 14.79 0.00 33.41 3.41
3005 3105 3.841643 TCCGTTCGGAATTACTTGTCTC 58.158 45.455 11.66 0.00 0.00 3.36
3006 3106 2.597305 CCGTTCGGAATTACTTGTCTCG 59.403 50.000 5.19 0.00 0.00 4.04
3007 3107 2.597305 CGTTCGGAATTACTTGTCTCGG 59.403 50.000 0.00 0.00 0.00 4.63
3008 3108 3.671433 CGTTCGGAATTACTTGTCTCGGA 60.671 47.826 0.00 0.00 0.00 4.55
3009 3109 4.430908 GTTCGGAATTACTTGTCTCGGAT 58.569 43.478 0.00 0.00 0.00 4.18
3010 3110 5.585390 GTTCGGAATTACTTGTCTCGGATA 58.415 41.667 0.00 0.00 0.00 2.59
3011 3111 6.214399 GTTCGGAATTACTTGTCTCGGATAT 58.786 40.000 0.00 0.00 0.00 1.63
3012 3112 5.769367 TCGGAATTACTTGTCTCGGATATG 58.231 41.667 0.00 0.00 0.00 1.78
3013 3113 4.923871 CGGAATTACTTGTCTCGGATATGG 59.076 45.833 0.00 0.00 0.00 2.74
3014 3114 5.278808 CGGAATTACTTGTCTCGGATATGGA 60.279 44.000 0.00 0.00 0.00 3.41
3015 3115 6.572509 CGGAATTACTTGTCTCGGATATGGAT 60.573 42.308 0.00 0.00 0.00 3.41
3016 3116 6.591834 GGAATTACTTGTCTCGGATATGGATG 59.408 42.308 0.00 0.00 0.00 3.51
3017 3117 6.672266 ATTACTTGTCTCGGATATGGATGT 57.328 37.500 0.00 0.00 0.00 3.06
3018 3118 7.776618 ATTACTTGTCTCGGATATGGATGTA 57.223 36.000 0.00 0.00 0.00 2.29
3019 3119 7.776618 TTACTTGTCTCGGATATGGATGTAT 57.223 36.000 0.00 0.00 0.00 2.29
3020 3120 6.274157 ACTTGTCTCGGATATGGATGTATC 57.726 41.667 0.00 0.00 0.00 2.24
3021 3121 6.013379 ACTTGTCTCGGATATGGATGTATCT 58.987 40.000 0.00 0.00 32.78 1.98
3022 3122 7.175797 ACTTGTCTCGGATATGGATGTATCTA 58.824 38.462 0.00 0.00 32.78 1.98
3023 3123 7.338196 ACTTGTCTCGGATATGGATGTATCTAG 59.662 40.741 0.00 0.00 32.78 2.43
3024 3124 6.958767 TGTCTCGGATATGGATGTATCTAGA 58.041 40.000 0.00 0.00 32.78 2.43
3025 3125 7.402862 TGTCTCGGATATGGATGTATCTAGAA 58.597 38.462 0.00 0.00 31.35 2.10
3026 3126 7.337184 TGTCTCGGATATGGATGTATCTAGAAC 59.663 40.741 0.00 0.00 31.35 3.01
3027 3127 7.554835 GTCTCGGATATGGATGTATCTAGAACT 59.445 40.741 0.00 0.00 31.35 3.01
3028 3128 8.769359 TCTCGGATATGGATGTATCTAGAACTA 58.231 37.037 0.00 0.00 32.78 2.24
3029 3129 9.397280 CTCGGATATGGATGTATCTAGAACTAA 57.603 37.037 0.00 0.00 32.78 2.24
3030 3130 9.749340 TCGGATATGGATGTATCTAGAACTAAA 57.251 33.333 0.00 0.00 32.78 1.85
3036 3136 8.289939 TGGATGTATCTAGAACTAAAAGACGT 57.710 34.615 0.00 0.00 0.00 4.34
3037 3137 8.404000 TGGATGTATCTAGAACTAAAAGACGTC 58.596 37.037 7.70 7.70 0.00 4.34
3038 3138 8.623030 GGATGTATCTAGAACTAAAAGACGTCT 58.377 37.037 13.58 13.58 0.00 4.18
3041 3141 9.881649 TGTATCTAGAACTAAAAGACGTCTAGA 57.118 33.333 20.39 14.48 38.94 2.43
3045 3145 9.881649 TCTAGAACTAAAAGACGTCTAGATACA 57.118 33.333 20.39 0.43 32.48 2.29
3048 3148 8.623030 AGAACTAAAAGACGTCTAGATACATCC 58.377 37.037 20.39 4.03 0.00 3.51
3049 3149 7.876936 ACTAAAAGACGTCTAGATACATCCA 57.123 36.000 20.39 0.00 0.00 3.41
3050 3150 8.466617 ACTAAAAGACGTCTAGATACATCCAT 57.533 34.615 20.39 0.00 0.00 3.41
3051 3151 8.915036 ACTAAAAGACGTCTAGATACATCCATT 58.085 33.333 20.39 1.38 0.00 3.16
3052 3152 9.751542 CTAAAAGACGTCTAGATACATCCATTT 57.248 33.333 20.39 12.85 0.00 2.32
3053 3153 8.649973 AAAAGACGTCTAGATACATCCATTTC 57.350 34.615 20.39 0.00 0.00 2.17
3054 3154 7.589958 AAGACGTCTAGATACATCCATTTCT 57.410 36.000 20.39 0.00 0.00 2.52
3055 3155 6.976088 AGACGTCTAGATACATCCATTTCTG 58.024 40.000 18.46 0.00 0.00 3.02
3056 3156 5.533482 ACGTCTAGATACATCCATTTCTGC 58.467 41.667 0.00 0.00 0.00 4.26
3057 3157 4.926238 CGTCTAGATACATCCATTTCTGCC 59.074 45.833 0.00 0.00 0.00 4.85
3058 3158 5.509670 CGTCTAGATACATCCATTTCTGCCA 60.510 44.000 0.00 0.00 0.00 4.92
3059 3159 6.471146 GTCTAGATACATCCATTTCTGCCAT 58.529 40.000 0.00 0.00 0.00 4.40
3060 3160 7.577616 CGTCTAGATACATCCATTTCTGCCATA 60.578 40.741 0.00 0.00 0.00 2.74
3061 3161 8.097038 GTCTAGATACATCCATTTCTGCCATAA 58.903 37.037 0.00 0.00 0.00 1.90
3062 3162 8.316946 TCTAGATACATCCATTTCTGCCATAAG 58.683 37.037 0.00 0.00 0.00 1.73
3063 3163 6.845908 AGATACATCCATTTCTGCCATAAGT 58.154 36.000 0.00 0.00 0.00 2.24
3064 3164 7.977818 AGATACATCCATTTCTGCCATAAGTA 58.022 34.615 0.00 0.00 0.00 2.24
3065 3165 8.439971 AGATACATCCATTTCTGCCATAAGTAA 58.560 33.333 0.00 0.00 0.00 2.24
3066 3166 9.236006 GATACATCCATTTCTGCCATAAGTAAT 57.764 33.333 0.00 0.00 0.00 1.89
3067 3167 7.902920 ACATCCATTTCTGCCATAAGTAATT 57.097 32.000 0.00 0.00 0.00 1.40
3068 3168 7.945134 ACATCCATTTCTGCCATAAGTAATTC 58.055 34.615 0.00 0.00 0.00 2.17
3069 3169 6.959639 TCCATTTCTGCCATAAGTAATTCC 57.040 37.500 0.00 0.00 0.00 3.01
3070 3170 5.530915 TCCATTTCTGCCATAAGTAATTCCG 59.469 40.000 0.00 0.00 0.00 4.30
3071 3171 5.530915 CCATTTCTGCCATAAGTAATTCCGA 59.469 40.000 0.00 0.00 0.00 4.55
3072 3172 6.039270 CCATTTCTGCCATAAGTAATTCCGAA 59.961 38.462 0.00 0.00 0.00 4.30
3073 3173 6.431198 TTTCTGCCATAAGTAATTCCGAAC 57.569 37.500 0.00 0.00 0.00 3.95
3074 3174 4.116961 TCTGCCATAAGTAATTCCGAACG 58.883 43.478 0.00 0.00 0.00 3.95
3075 3175 3.199677 TGCCATAAGTAATTCCGAACGG 58.800 45.455 6.94 6.94 0.00 4.44
3076 3176 3.118702 TGCCATAAGTAATTCCGAACGGA 60.119 43.478 12.04 12.04 43.52 4.69
3077 3177 3.493503 GCCATAAGTAATTCCGAACGGAG 59.506 47.826 15.34 2.36 46.06 4.63
3078 3178 4.056050 CCATAAGTAATTCCGAACGGAGG 58.944 47.826 15.34 6.96 46.06 4.30
3079 3179 2.685850 AAGTAATTCCGAACGGAGGG 57.314 50.000 15.34 0.00 46.06 4.30
3080 3180 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
3081 3181 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
3094 3194 3.064931 CGGAGGGAGTAGTTTGTGTTTC 58.935 50.000 0.00 0.00 0.00 2.78
3098 3198 5.061721 AGGGAGTAGTTTGTGTTTCCATT 57.938 39.130 0.00 0.00 0.00 3.16
3101 3201 7.238710 AGGGAGTAGTTTGTGTTTCCATTAAT 58.761 34.615 0.00 0.00 0.00 1.40
3127 3227 8.178313 ACAAAAACAATAAAACCAAAACCCAA 57.822 26.923 0.00 0.00 0.00 4.12
3145 3245 4.459337 ACCCAAGTTATGTAAAAGCTGCTC 59.541 41.667 1.00 0.00 0.00 4.26
3159 3259 4.595762 AGCTGCTCAACAAAATGTGAAT 57.404 36.364 0.00 0.00 0.00 2.57
3160 3260 4.553323 AGCTGCTCAACAAAATGTGAATC 58.447 39.130 0.00 0.00 0.00 2.52
3161 3261 4.280174 AGCTGCTCAACAAAATGTGAATCT 59.720 37.500 0.00 0.00 0.00 2.40
3162 3262 4.620184 GCTGCTCAACAAAATGTGAATCTC 59.380 41.667 0.00 0.00 0.00 2.75
3163 3263 5.765176 CTGCTCAACAAAATGTGAATCTCA 58.235 37.500 0.00 0.00 0.00 3.27
3164 3264 6.146601 TGCTCAACAAAATGTGAATCTCAA 57.853 33.333 0.00 0.00 0.00 3.02
3165 3265 6.751157 TGCTCAACAAAATGTGAATCTCAAT 58.249 32.000 0.00 0.00 0.00 2.57
3166 3266 7.211573 TGCTCAACAAAATGTGAATCTCAATT 58.788 30.769 0.00 0.00 0.00 2.32
3167 3267 7.711772 TGCTCAACAAAATGTGAATCTCAATTT 59.288 29.630 0.00 0.00 0.00 1.82
3168 3268 9.195411 GCTCAACAAAATGTGAATCTCAATTTA 57.805 29.630 0.00 0.00 0.00 1.40
3214 3314 1.352352 AGTCCATGACAAAGGGAGTGG 59.648 52.381 0.00 0.00 34.60 4.00
3216 3316 2.304761 GTCCATGACAAAGGGAGTGGTA 59.695 50.000 0.00 0.00 32.09 3.25
3228 3328 8.211629 ACAAAGGGAGTGGTATCTTGTATTATC 58.788 37.037 0.00 0.00 0.00 1.75
3260 3360 9.212641 TGATATTATGCTTAGCAATCTTCTGTC 57.787 33.333 12.08 3.46 43.62 3.51
3279 3379 3.964688 TGTCCTCTTCCAACTGAGTACAA 59.035 43.478 0.00 0.00 28.64 2.41
3280 3380 4.593206 TGTCCTCTTCCAACTGAGTACAAT 59.407 41.667 0.00 0.00 28.64 2.71
3319 3421 9.417561 AGTAGTTTGTATTCACTAGCCAGTATA 57.582 33.333 0.00 0.00 32.21 1.47
3330 3432 6.097696 TCACTAGCCAGTATACAGTTGCAATA 59.902 38.462 0.59 0.00 32.21 1.90
3337 3439 7.173907 GCCAGTATACAGTTGCAATAAGATGAT 59.826 37.037 0.59 0.00 0.00 2.45
3348 3450 7.001099 TGCAATAAGATGATGCTCAGATCTA 57.999 36.000 0.00 0.00 40.66 1.98
3349 3451 7.447594 TGCAATAAGATGATGCTCAGATCTAA 58.552 34.615 0.00 0.00 40.66 2.10
3353 3455 9.709495 AATAAGATGATGCTCAGATCTAAAGAC 57.291 33.333 8.18 1.75 0.00 3.01
3355 3457 7.305813 AGATGATGCTCAGATCTAAAGACAT 57.694 36.000 8.18 9.80 0.00 3.06
3420 3550 4.339872 AAATGAGTGCTGCATTTTTGGA 57.660 36.364 5.27 0.00 41.71 3.53
3433 3563 4.258543 CATTTTTGGAGATTGCCTTGCAT 58.741 39.130 0.00 0.00 38.76 3.96
3456 3586 1.002069 AATCTTGCATCCCCCAGTCA 58.998 50.000 0.00 0.00 0.00 3.41
3462 3592 0.257039 GCATCCCCCAGTCACAAGAT 59.743 55.000 0.00 0.00 0.00 2.40
3465 3595 0.984230 TCCCCCAGTCACAAGATCAC 59.016 55.000 0.00 0.00 0.00 3.06
3466 3596 0.692476 CCCCCAGTCACAAGATCACA 59.308 55.000 0.00 0.00 0.00 3.58
3483 3613 1.826096 CACAATGGACAATGGGCATGA 59.174 47.619 0.00 0.00 0.00 3.07
3494 3624 4.342951 ACAATGGGCATGATTATGTCAAGG 59.657 41.667 4.32 0.00 40.72 3.61
3538 3668 6.072112 TGTGTTTCTTGCAATCCTTTCTAC 57.928 37.500 0.00 0.00 0.00 2.59
3580 3710 2.161855 TGAGAAGTTGCGCCAATGAAT 58.838 42.857 4.18 0.00 0.00 2.57
3588 3718 2.411904 TGCGCCAATGAATGAAAAACC 58.588 42.857 4.18 0.00 0.00 3.27
3594 3724 4.821260 GCCAATGAATGAAAAACCCTTTGT 59.179 37.500 0.00 0.00 0.00 2.83
3605 3735 5.930837 AAAACCCTTTGTCATCTTGAACA 57.069 34.783 0.00 0.00 0.00 3.18
3606 3736 6.484364 AAAACCCTTTGTCATCTTGAACAT 57.516 33.333 0.00 0.00 0.00 2.71
3607 3737 5.458041 AACCCTTTGTCATCTTGAACATG 57.542 39.130 0.00 0.00 0.00 3.21
3608 3738 4.728772 ACCCTTTGTCATCTTGAACATGA 58.271 39.130 0.00 0.00 0.00 3.07
3610 3740 5.416952 ACCCTTTGTCATCTTGAACATGATC 59.583 40.000 0.00 0.00 32.86 2.92
3613 3743 6.152323 CCTTTGTCATCTTGAACATGATCCTT 59.848 38.462 0.00 0.00 32.86 3.36
3614 3744 6.505044 TTGTCATCTTGAACATGATCCTTG 57.495 37.500 0.00 0.00 32.86 3.61
3615 3745 4.945543 TGTCATCTTGAACATGATCCTTGG 59.054 41.667 0.00 0.00 32.86 3.61
3616 3746 4.946157 GTCATCTTGAACATGATCCTTGGT 59.054 41.667 0.00 0.00 32.86 3.67
3618 3748 5.649395 TCATCTTGAACATGATCCTTGGTTC 59.351 40.000 0.00 0.00 39.93 3.62
3619 3749 5.246981 TCTTGAACATGATCCTTGGTTCT 57.753 39.130 0.00 0.00 40.12 3.01
3620 3750 5.005740 TCTTGAACATGATCCTTGGTTCTG 58.994 41.667 0.00 8.78 40.12 3.02
3683 4594 9.890915 AGGCAATAGGGTTTATATTTGGAATAA 57.109 29.630 0.00 0.00 0.00 1.40
3684 4595 9.923143 GGCAATAGGGTTTATATTTGGAATAAC 57.077 33.333 0.00 0.00 0.00 1.89
3685 4596 9.923143 GCAATAGGGTTTATATTTGGAATAACC 57.077 33.333 0.00 0.00 39.54 2.85
3727 4638 6.459923 AGTAGGACTGCTTTGTTCTTTAGAG 58.540 40.000 0.00 0.00 0.00 2.43
3753 4665 8.078596 GCCTTTATTCACTGAATGATTGTATCC 58.921 37.037 13.66 0.00 37.11 2.59
3754 4666 9.123902 CCTTTATTCACTGAATGATTGTATCCA 57.876 33.333 13.66 0.00 37.11 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.838339 AATTAAAATGTTTTATGTGGTTGGTCA 57.162 25.926 0.00 0.00 33.12 4.02
16 17 9.981114 CCAAAGTACCTGAGAAAATTAAAATGT 57.019 29.630 0.00 0.00 0.00 2.71
17 18 8.925700 GCCAAAGTACCTGAGAAAATTAAAATG 58.074 33.333 0.00 0.00 0.00 2.32
18 19 8.870116 AGCCAAAGTACCTGAGAAAATTAAAAT 58.130 29.630 0.00 0.00 0.00 1.82
19 20 8.245195 AGCCAAAGTACCTGAGAAAATTAAAA 57.755 30.769 0.00 0.00 0.00 1.52
20 21 7.833285 AGCCAAAGTACCTGAGAAAATTAAA 57.167 32.000 0.00 0.00 0.00 1.52
21 22 7.833285 AAGCCAAAGTACCTGAGAAAATTAA 57.167 32.000 0.00 0.00 0.00 1.40
22 23 7.039993 GGAAAGCCAAAGTACCTGAGAAAATTA 60.040 37.037 0.00 0.00 0.00 1.40
23 24 6.239317 GGAAAGCCAAAGTACCTGAGAAAATT 60.239 38.462 0.00 0.00 0.00 1.82
24 25 5.243954 GGAAAGCCAAAGTACCTGAGAAAAT 59.756 40.000 0.00 0.00 0.00 1.82
25 26 4.583073 GGAAAGCCAAAGTACCTGAGAAAA 59.417 41.667 0.00 0.00 0.00 2.29
26 27 4.142038 GGAAAGCCAAAGTACCTGAGAAA 58.858 43.478 0.00 0.00 0.00 2.52
27 28 3.137544 TGGAAAGCCAAAGTACCTGAGAA 59.862 43.478 0.00 0.00 42.49 2.87
28 29 2.708861 TGGAAAGCCAAAGTACCTGAGA 59.291 45.455 0.00 0.00 42.49 3.27
29 30 3.140325 TGGAAAGCCAAAGTACCTGAG 57.860 47.619 0.00 0.00 42.49 3.35
40 41 3.644966 AGAAATATCCGTGGAAAGCCA 57.355 42.857 0.00 0.00 43.47 4.75
41 42 4.455877 CCATAGAAATATCCGTGGAAAGCC 59.544 45.833 0.00 0.00 34.23 4.35
42 43 5.305585 TCCATAGAAATATCCGTGGAAAGC 58.694 41.667 0.00 0.00 36.94 3.51
43 44 8.314751 ACTATCCATAGAAATATCCGTGGAAAG 58.685 37.037 0.39 0.00 40.74 2.62
44 45 8.202461 ACTATCCATAGAAATATCCGTGGAAA 57.798 34.615 0.39 0.00 40.74 3.13
45 46 7.792364 ACTATCCATAGAAATATCCGTGGAA 57.208 36.000 0.39 0.00 40.74 3.53
46 47 7.792364 AACTATCCATAGAAATATCCGTGGA 57.208 36.000 0.39 0.00 41.27 4.02
47 48 8.528643 TGTAACTATCCATAGAAATATCCGTGG 58.471 37.037 0.39 0.00 34.50 4.94
48 49 9.355215 GTGTAACTATCCATAGAAATATCCGTG 57.645 37.037 0.39 0.00 34.50 4.94
49 50 8.529476 GGTGTAACTATCCATAGAAATATCCGT 58.471 37.037 0.39 0.00 36.74 4.69
50 51 7.980099 GGGTGTAACTATCCATAGAAATATCCG 59.020 40.741 0.39 0.00 36.74 4.18
51 52 8.822805 TGGGTGTAACTATCCATAGAAATATCC 58.177 37.037 0.39 0.00 36.74 2.59
54 55 9.387397 TGATGGGTGTAACTATCCATAGAAATA 57.613 33.333 0.39 0.00 39.81 1.40
55 56 8.275187 TGATGGGTGTAACTATCCATAGAAAT 57.725 34.615 0.39 0.00 39.81 2.17
56 57 7.684317 TGATGGGTGTAACTATCCATAGAAA 57.316 36.000 0.39 0.00 39.81 2.52
57 58 7.512402 TGATGATGGGTGTAACTATCCATAGAA 59.488 37.037 0.39 0.00 39.81 2.10
58 59 7.016296 TGATGATGGGTGTAACTATCCATAGA 58.984 38.462 0.39 0.00 39.81 1.98
59 60 7.244886 TGATGATGGGTGTAACTATCCATAG 57.755 40.000 0.00 0.00 39.81 2.23
60 61 7.625498 TTGATGATGGGTGTAACTATCCATA 57.375 36.000 0.00 0.00 39.81 2.74
61 62 6.514012 TTGATGATGGGTGTAACTATCCAT 57.486 37.500 0.00 0.00 42.13 3.41
62 63 5.966853 TTGATGATGGGTGTAACTATCCA 57.033 39.130 0.00 0.00 36.74 3.41
63 64 6.533730 TGATTGATGATGGGTGTAACTATCC 58.466 40.000 0.00 0.00 36.74 2.59
64 65 8.627208 AATGATTGATGATGGGTGTAACTATC 57.373 34.615 0.00 0.00 36.74 2.08
65 66 9.425248 AAAATGATTGATGATGGGTGTAACTAT 57.575 29.630 0.00 0.00 36.74 2.12
66 67 8.821686 AAAATGATTGATGATGGGTGTAACTA 57.178 30.769 0.00 0.00 36.74 2.24
67 68 7.147846 GGAAAATGATTGATGATGGGTGTAACT 60.148 37.037 0.00 0.00 36.74 2.24
68 69 6.980397 GGAAAATGATTGATGATGGGTGTAAC 59.020 38.462 0.00 0.00 0.00 2.50
69 70 6.896860 AGGAAAATGATTGATGATGGGTGTAA 59.103 34.615 0.00 0.00 0.00 2.41
70 71 6.434302 AGGAAAATGATTGATGATGGGTGTA 58.566 36.000 0.00 0.00 0.00 2.90
71 72 5.274822 AGGAAAATGATTGATGATGGGTGT 58.725 37.500 0.00 0.00 0.00 4.16
72 73 5.864418 AGGAAAATGATTGATGATGGGTG 57.136 39.130 0.00 0.00 0.00 4.61
95 96 9.178758 GGGAAATTCTTTGTCAAGTCACTATAT 57.821 33.333 0.00 0.00 0.00 0.86
96 97 8.160765 TGGGAAATTCTTTGTCAAGTCACTATA 58.839 33.333 0.00 0.00 0.00 1.31
97 98 7.004086 TGGGAAATTCTTTGTCAAGTCACTAT 58.996 34.615 0.00 0.00 0.00 2.12
98 99 6.361433 TGGGAAATTCTTTGTCAAGTCACTA 58.639 36.000 0.00 0.00 0.00 2.74
99 100 5.200483 TGGGAAATTCTTTGTCAAGTCACT 58.800 37.500 0.00 0.00 0.00 3.41
100 101 5.514274 TGGGAAATTCTTTGTCAAGTCAC 57.486 39.130 0.00 0.00 0.00 3.67
101 102 5.243730 GGATGGGAAATTCTTTGTCAAGTCA 59.756 40.000 0.00 0.00 0.00 3.41
102 103 5.619981 CGGATGGGAAATTCTTTGTCAAGTC 60.620 44.000 0.00 0.00 0.00 3.01
103 104 4.218417 CGGATGGGAAATTCTTTGTCAAGT 59.782 41.667 0.00 0.00 0.00 3.16
104 105 4.737054 CGGATGGGAAATTCTTTGTCAAG 58.263 43.478 0.00 0.00 0.00 3.02
105 106 3.056891 GCGGATGGGAAATTCTTTGTCAA 60.057 43.478 0.00 0.00 0.00 3.18
106 107 2.491693 GCGGATGGGAAATTCTTTGTCA 59.508 45.455 0.00 0.00 0.00 3.58
107 108 2.491693 TGCGGATGGGAAATTCTTTGTC 59.508 45.455 0.00 0.00 0.00 3.18
108 109 2.231235 GTGCGGATGGGAAATTCTTTGT 59.769 45.455 0.00 0.00 0.00 2.83
109 110 2.493278 AGTGCGGATGGGAAATTCTTTG 59.507 45.455 0.00 0.00 0.00 2.77
110 111 2.755103 GAGTGCGGATGGGAAATTCTTT 59.245 45.455 0.00 0.00 0.00 2.52
111 112 2.290896 TGAGTGCGGATGGGAAATTCTT 60.291 45.455 0.00 0.00 0.00 2.52
112 113 1.281867 TGAGTGCGGATGGGAAATTCT 59.718 47.619 0.00 0.00 0.00 2.40
113 114 1.750193 TGAGTGCGGATGGGAAATTC 58.250 50.000 0.00 0.00 0.00 2.17
114 115 2.214376 TTGAGTGCGGATGGGAAATT 57.786 45.000 0.00 0.00 0.00 1.82
115 116 2.026641 CATTGAGTGCGGATGGGAAAT 58.973 47.619 0.00 0.00 0.00 2.17
116 117 1.271871 ACATTGAGTGCGGATGGGAAA 60.272 47.619 0.00 0.00 0.00 3.13
117 118 0.327924 ACATTGAGTGCGGATGGGAA 59.672 50.000 0.00 0.00 0.00 3.97
118 119 0.107703 GACATTGAGTGCGGATGGGA 60.108 55.000 0.00 0.00 0.00 4.37
119 120 1.097547 GGACATTGAGTGCGGATGGG 61.098 60.000 0.00 0.00 0.00 4.00
120 121 0.392863 TGGACATTGAGTGCGGATGG 60.393 55.000 0.00 0.00 42.22 3.51
121 122 1.671979 ATGGACATTGAGTGCGGATG 58.328 50.000 0.00 0.00 42.22 3.51
122 123 3.777106 ATATGGACATTGAGTGCGGAT 57.223 42.857 0.00 0.00 42.22 4.18
123 124 4.100963 AGTTATATGGACATTGAGTGCGGA 59.899 41.667 0.00 0.00 42.22 5.54
124 125 4.380531 AGTTATATGGACATTGAGTGCGG 58.619 43.478 0.00 0.00 42.22 5.69
125 126 5.277490 CCAAGTTATATGGACATTGAGTGCG 60.277 44.000 0.00 0.00 42.22 5.34
126 127 5.590259 ACCAAGTTATATGGACATTGAGTGC 59.410 40.000 0.00 0.00 40.56 4.40
127 128 7.630242 AACCAAGTTATATGGACATTGAGTG 57.370 36.000 0.00 0.00 40.56 3.51
128 129 8.109634 AGAAACCAAGTTATATGGACATTGAGT 58.890 33.333 0.00 0.00 40.56 3.41
129 130 8.511604 AGAAACCAAGTTATATGGACATTGAG 57.488 34.615 0.00 0.00 40.56 3.02
134 135 9.213777 AGAGATAGAAACCAAGTTATATGGACA 57.786 33.333 0.00 0.00 40.56 4.02
135 136 9.699703 GAGAGATAGAAACCAAGTTATATGGAC 57.300 37.037 0.00 0.00 40.56 4.02
136 137 8.871125 GGAGAGATAGAAACCAAGTTATATGGA 58.129 37.037 0.00 0.00 40.56 3.41
137 138 8.097662 GGGAGAGATAGAAACCAAGTTATATGG 58.902 40.741 0.00 0.00 43.84 2.74
138 139 8.097662 GGGGAGAGATAGAAACCAAGTTATATG 58.902 40.741 0.00 0.00 0.00 1.78
139 140 7.794683 TGGGGAGAGATAGAAACCAAGTTATAT 59.205 37.037 0.00 0.00 0.00 0.86
140 141 7.136885 TGGGGAGAGATAGAAACCAAGTTATA 58.863 38.462 0.00 0.00 0.00 0.98
141 142 5.970640 TGGGGAGAGATAGAAACCAAGTTAT 59.029 40.000 0.00 0.00 0.00 1.89
142 143 5.347124 TGGGGAGAGATAGAAACCAAGTTA 58.653 41.667 0.00 0.00 0.00 2.24
143 144 4.175962 TGGGGAGAGATAGAAACCAAGTT 58.824 43.478 0.00 0.00 0.00 2.66
144 145 3.803340 TGGGGAGAGATAGAAACCAAGT 58.197 45.455 0.00 0.00 0.00 3.16
145 146 5.379706 AATGGGGAGAGATAGAAACCAAG 57.620 43.478 0.00 0.00 0.00 3.61
146 147 5.796502 AAATGGGGAGAGATAGAAACCAA 57.203 39.130 0.00 0.00 0.00 3.67
147 148 5.796502 AAAATGGGGAGAGATAGAAACCA 57.203 39.130 0.00 0.00 0.00 3.67
148 149 7.347252 AGTTAAAATGGGGAGAGATAGAAACC 58.653 38.462 0.00 0.00 0.00 3.27
154 155 9.847224 GTGAAATAGTTAAAATGGGGAGAGATA 57.153 33.333 0.00 0.00 0.00 1.98
155 156 8.336235 TGTGAAATAGTTAAAATGGGGAGAGAT 58.664 33.333 0.00 0.00 0.00 2.75
156 157 7.695055 TGTGAAATAGTTAAAATGGGGAGAGA 58.305 34.615 0.00 0.00 0.00 3.10
157 158 7.938140 TGTGAAATAGTTAAAATGGGGAGAG 57.062 36.000 0.00 0.00 0.00 3.20
158 159 8.336235 AGATGTGAAATAGTTAAAATGGGGAGA 58.664 33.333 0.00 0.00 0.00 3.71
159 160 8.525290 AGATGTGAAATAGTTAAAATGGGGAG 57.475 34.615 0.00 0.00 0.00 4.30
160 161 9.403583 GTAGATGTGAAATAGTTAAAATGGGGA 57.596 33.333 0.00 0.00 0.00 4.81
161 162 9.408648 AGTAGATGTGAAATAGTTAAAATGGGG 57.591 33.333 0.00 0.00 0.00 4.96
175 176 9.383519 GGAACATTCTGAATAGTAGATGTGAAA 57.616 33.333 1.98 0.00 0.00 2.69
176 177 8.539544 TGGAACATTCTGAATAGTAGATGTGAA 58.460 33.333 1.98 0.00 0.00 3.18
177 178 8.078060 TGGAACATTCTGAATAGTAGATGTGA 57.922 34.615 1.98 0.00 0.00 3.58
194 195 8.793592 GGTGAAACTCTAAAACTATGGAACATT 58.206 33.333 0.00 0.00 39.93 2.71
195 196 7.942341 TGGTGAAACTCTAAAACTATGGAACAT 59.058 33.333 0.00 0.00 39.93 2.71
196 197 7.284074 TGGTGAAACTCTAAAACTATGGAACA 58.716 34.615 0.00 0.00 39.77 3.18
197 198 7.739498 TGGTGAAACTCTAAAACTATGGAAC 57.261 36.000 0.00 0.00 36.74 3.62
198 199 7.393234 CCATGGTGAAACTCTAAAACTATGGAA 59.607 37.037 2.57 0.00 46.90 3.53
199 200 6.884295 CCATGGTGAAACTCTAAAACTATGGA 59.116 38.462 2.57 0.00 46.90 3.41
200 201 6.884295 TCCATGGTGAAACTCTAAAACTATGG 59.116 38.462 12.58 9.47 45.92 2.74
201 202 7.607991 ACTCCATGGTGAAACTCTAAAACTATG 59.392 37.037 20.43 0.00 36.74 2.23
202 203 7.607991 CACTCCATGGTGAAACTCTAAAACTAT 59.392 37.037 20.43 0.00 39.34 2.12
203 204 6.934645 CACTCCATGGTGAAACTCTAAAACTA 59.065 38.462 20.43 0.00 39.34 2.24
204 205 5.765182 CACTCCATGGTGAAACTCTAAAACT 59.235 40.000 20.43 0.00 39.34 2.66
205 206 5.531287 ACACTCCATGGTGAAACTCTAAAAC 59.469 40.000 20.43 0.00 40.13 2.43
206 207 5.690865 ACACTCCATGGTGAAACTCTAAAA 58.309 37.500 20.43 0.00 40.13 1.52
207 208 5.304686 ACACTCCATGGTGAAACTCTAAA 57.695 39.130 20.43 0.00 40.13 1.85
208 209 4.974645 ACACTCCATGGTGAAACTCTAA 57.025 40.909 20.43 0.00 40.13 2.10
209 210 4.593206 AGAACACTCCATGGTGAAACTCTA 59.407 41.667 20.43 0.00 40.13 2.43
210 211 3.392616 AGAACACTCCATGGTGAAACTCT 59.607 43.478 20.43 12.17 40.13 3.24
211 212 3.744660 AGAACACTCCATGGTGAAACTC 58.255 45.455 20.43 10.35 40.13 3.01
212 213 3.496870 GGAGAACACTCCATGGTGAAACT 60.497 47.826 20.43 12.47 46.67 2.66
213 214 2.814336 GGAGAACACTCCATGGTGAAAC 59.186 50.000 20.43 8.43 46.67 2.78
214 215 3.140325 GGAGAACACTCCATGGTGAAA 57.860 47.619 20.43 0.00 46.67 2.69
215 216 2.859165 GGAGAACACTCCATGGTGAA 57.141 50.000 20.43 0.00 46.67 3.18
224 225 4.930405 GGCTTTACTTGTAGGAGAACACTC 59.070 45.833 0.00 0.00 0.00 3.51
225 226 4.262938 GGGCTTTACTTGTAGGAGAACACT 60.263 45.833 0.00 0.00 0.00 3.55
226 227 4.001652 GGGCTTTACTTGTAGGAGAACAC 58.998 47.826 0.00 0.00 0.00 3.32
227 228 3.008704 GGGGCTTTACTTGTAGGAGAACA 59.991 47.826 0.00 0.00 0.00 3.18
228 229 3.263681 AGGGGCTTTACTTGTAGGAGAAC 59.736 47.826 0.00 0.00 0.00 3.01
229 230 3.518303 GAGGGGCTTTACTTGTAGGAGAA 59.482 47.826 0.00 0.00 0.00 2.87
230 231 3.105283 GAGGGGCTTTACTTGTAGGAGA 58.895 50.000 0.00 0.00 0.00 3.71
231 232 2.170817 GGAGGGGCTTTACTTGTAGGAG 59.829 54.545 0.00 0.00 0.00 3.69
232 233 2.193993 GGAGGGGCTTTACTTGTAGGA 58.806 52.381 0.00 0.00 0.00 2.94
233 234 1.913419 TGGAGGGGCTTTACTTGTAGG 59.087 52.381 0.00 0.00 0.00 3.18
234 235 2.355818 GGTGGAGGGGCTTTACTTGTAG 60.356 54.545 0.00 0.00 0.00 2.74
235 236 1.631898 GGTGGAGGGGCTTTACTTGTA 59.368 52.381 0.00 0.00 0.00 2.41
236 237 0.404426 GGTGGAGGGGCTTTACTTGT 59.596 55.000 0.00 0.00 0.00 3.16
237 238 0.323451 GGGTGGAGGGGCTTTACTTG 60.323 60.000 0.00 0.00 0.00 3.16
238 239 1.506907 GGGGTGGAGGGGCTTTACTT 61.507 60.000 0.00 0.00 0.00 2.24
239 240 1.929088 GGGGTGGAGGGGCTTTACT 60.929 63.158 0.00 0.00 0.00 2.24
240 241 1.795951 TTGGGGTGGAGGGGCTTTAC 61.796 60.000 0.00 0.00 0.00 2.01
241 242 1.466386 TTGGGGTGGAGGGGCTTTA 60.466 57.895 0.00 0.00 0.00 1.85
242 243 2.785389 TTGGGGTGGAGGGGCTTT 60.785 61.111 0.00 0.00 0.00 3.51
243 244 3.590574 GTTGGGGTGGAGGGGCTT 61.591 66.667 0.00 0.00 0.00 4.35
244 245 4.617595 AGTTGGGGTGGAGGGGCT 62.618 66.667 0.00 0.00 0.00 5.19
245 246 4.366684 CAGTTGGGGTGGAGGGGC 62.367 72.222 0.00 0.00 0.00 5.80
246 247 1.509548 ATTCAGTTGGGGTGGAGGGG 61.510 60.000 0.00 0.00 0.00 4.79
247 248 0.323725 CATTCAGTTGGGGTGGAGGG 60.324 60.000 0.00 0.00 0.00 4.30
248 249 0.323725 CCATTCAGTTGGGGTGGAGG 60.324 60.000 0.00 0.00 32.80 4.30
249 250 0.967380 GCCATTCAGTTGGGGTGGAG 60.967 60.000 0.00 0.00 37.24 3.86
250 251 1.076549 GCCATTCAGTTGGGGTGGA 59.923 57.895 0.00 0.00 37.24 4.02
251 252 1.984026 GGCCATTCAGTTGGGGTGG 60.984 63.158 0.00 0.00 37.24 4.61
252 253 0.967380 GAGGCCATTCAGTTGGGGTG 60.967 60.000 5.01 0.00 37.24 4.61
253 254 1.384191 GAGGCCATTCAGTTGGGGT 59.616 57.895 5.01 0.00 37.24 4.95
254 255 0.682209 CTGAGGCCATTCAGTTGGGG 60.682 60.000 12.79 0.00 39.76 4.96
255 256 1.318158 GCTGAGGCCATTCAGTTGGG 61.318 60.000 20.00 0.00 45.07 4.12
256 257 2.187073 GCTGAGGCCATTCAGTTGG 58.813 57.895 20.00 0.25 45.07 3.77
267 268 5.409826 GTCATAATATTACTGTGGCTGAGGC 59.590 44.000 0.00 0.00 37.82 4.70
268 269 6.763355 AGTCATAATATTACTGTGGCTGAGG 58.237 40.000 0.00 0.00 0.00 3.86
269 270 9.764363 TTTAGTCATAATATTACTGTGGCTGAG 57.236 33.333 10.56 0.00 0.00 3.35
272 273 9.899661 TGTTTTAGTCATAATATTACTGTGGCT 57.100 29.630 6.84 6.84 0.00 4.75
287 288 9.533831 AGATTTTACAATCCCTGTTTTAGTCAT 57.466 29.630 0.00 0.00 39.95 3.06
288 289 8.934023 AGATTTTACAATCCCTGTTTTAGTCA 57.066 30.769 0.00 0.00 39.95 3.41
289 290 9.626045 CAAGATTTTACAATCCCTGTTTTAGTC 57.374 33.333 0.00 0.00 39.95 2.59
290 291 8.585018 CCAAGATTTTACAATCCCTGTTTTAGT 58.415 33.333 0.00 0.00 39.95 2.24
291 292 8.034804 CCCAAGATTTTACAATCCCTGTTTTAG 58.965 37.037 0.00 0.00 39.95 1.85
292 293 7.511028 ACCCAAGATTTTACAATCCCTGTTTTA 59.489 33.333 0.00 0.00 39.95 1.52
293 294 6.328934 ACCCAAGATTTTACAATCCCTGTTTT 59.671 34.615 0.00 0.00 39.95 2.43
294 295 5.843969 ACCCAAGATTTTACAATCCCTGTTT 59.156 36.000 0.00 0.00 39.95 2.83
295 296 5.402630 ACCCAAGATTTTACAATCCCTGTT 58.597 37.500 0.00 0.00 39.95 3.16
296 297 5.010708 ACCCAAGATTTTACAATCCCTGT 57.989 39.130 0.00 0.00 39.95 4.00
297 298 6.405842 GCTTACCCAAGATTTTACAATCCCTG 60.406 42.308 0.00 0.00 39.95 4.45
298 299 5.656859 GCTTACCCAAGATTTTACAATCCCT 59.343 40.000 0.00 0.00 39.95 4.20
299 300 5.420739 TGCTTACCCAAGATTTTACAATCCC 59.579 40.000 0.00 0.00 39.95 3.85
300 301 6.524101 TGCTTACCCAAGATTTTACAATCC 57.476 37.500 0.00 0.00 39.95 3.01
301 302 8.000780 AGATGCTTACCCAAGATTTTACAATC 57.999 34.615 0.00 0.00 39.45 2.67
302 303 7.961326 AGATGCTTACCCAAGATTTTACAAT 57.039 32.000 0.00 0.00 33.20 2.71
303 304 7.775053 AAGATGCTTACCCAAGATTTTACAA 57.225 32.000 0.00 0.00 33.20 2.41
304 305 7.775053 AAAGATGCTTACCCAAGATTTTACA 57.225 32.000 0.00 0.00 33.20 2.41
305 306 9.788960 CTTAAAGATGCTTACCCAAGATTTTAC 57.211 33.333 0.00 0.00 33.20 2.01
306 307 9.747898 TCTTAAAGATGCTTACCCAAGATTTTA 57.252 29.630 0.00 0.00 33.20 1.52
307 308 8.650143 TCTTAAAGATGCTTACCCAAGATTTT 57.350 30.769 0.00 0.00 33.20 1.82
308 309 7.148000 GCTCTTAAAGATGCTTACCCAAGATTT 60.148 37.037 0.00 0.00 33.20 2.17
309 310 6.319911 GCTCTTAAAGATGCTTACCCAAGATT 59.680 38.462 0.00 0.00 33.20 2.40
310 311 5.825151 GCTCTTAAAGATGCTTACCCAAGAT 59.175 40.000 0.00 0.00 33.20 2.40
311 312 5.045578 AGCTCTTAAAGATGCTTACCCAAGA 60.046 40.000 0.00 0.00 33.20 3.02
312 313 5.189180 AGCTCTTAAAGATGCTTACCCAAG 58.811 41.667 0.00 0.00 28.89 3.61
313 314 5.179452 AGCTCTTAAAGATGCTTACCCAA 57.821 39.130 0.00 0.00 28.89 4.12
314 315 4.844349 AGCTCTTAAAGATGCTTACCCA 57.156 40.909 0.00 0.00 28.89 4.51
315 316 6.516739 AAAAGCTCTTAAAGATGCTTACCC 57.483 37.500 10.84 0.00 37.56 3.69
338 339 8.215736 GGCCTACCCATCTAGTAGAATTAAAAA 58.784 37.037 3.45 0.00 39.71 1.94
339 340 7.472381 CGGCCTACCCATCTAGTAGAATTAAAA 60.472 40.741 3.45 0.00 39.71 1.52
340 341 6.014840 CGGCCTACCCATCTAGTAGAATTAAA 60.015 42.308 3.45 0.00 39.71 1.52
341 342 5.479375 CGGCCTACCCATCTAGTAGAATTAA 59.521 44.000 3.45 0.00 39.71 1.40
342 343 5.014858 CGGCCTACCCATCTAGTAGAATTA 58.985 45.833 3.45 0.00 39.71 1.40
343 344 3.833070 CGGCCTACCCATCTAGTAGAATT 59.167 47.826 3.45 0.00 39.71 2.17
344 345 3.181420 ACGGCCTACCCATCTAGTAGAAT 60.181 47.826 3.45 0.00 39.71 2.40
345 346 2.176364 ACGGCCTACCCATCTAGTAGAA 59.824 50.000 3.45 0.00 39.71 2.10
346 347 1.779092 ACGGCCTACCCATCTAGTAGA 59.221 52.381 1.45 1.45 39.71 2.59
347 348 2.161030 GACGGCCTACCCATCTAGTAG 58.839 57.143 0.00 0.00 37.53 2.57
348 349 1.779092 AGACGGCCTACCCATCTAGTA 59.221 52.381 0.00 0.00 0.00 1.82
349 350 0.556747 AGACGGCCTACCCATCTAGT 59.443 55.000 0.00 0.00 0.00 2.57
350 351 0.962489 CAGACGGCCTACCCATCTAG 59.038 60.000 0.00 0.00 0.00 2.43
351 352 0.260816 ACAGACGGCCTACCCATCTA 59.739 55.000 0.00 0.00 0.00 1.98
352 353 1.001760 ACAGACGGCCTACCCATCT 59.998 57.895 0.00 0.00 0.00 2.90
353 354 1.442148 GACAGACGGCCTACCCATC 59.558 63.158 0.00 0.00 0.00 3.51
354 355 2.423898 CGACAGACGGCCTACCCAT 61.424 63.158 0.00 0.00 38.46 4.00
355 356 3.066190 CGACAGACGGCCTACCCA 61.066 66.667 0.00 0.00 38.46 4.51
356 357 4.509737 GCGACAGACGGCCTACCC 62.510 72.222 0.00 0.00 42.83 3.69
379 380 0.179032 TTGAGTGGGCGAGCAAAAGA 60.179 50.000 0.00 0.00 0.00 2.52
380 381 0.667993 TTTGAGTGGGCGAGCAAAAG 59.332 50.000 0.00 0.00 0.00 2.27
387 388 1.602237 GGAGGATTTGAGTGGGCGA 59.398 57.895 0.00 0.00 0.00 5.54
453 455 1.223211 GAGAGGAAGAAGCCAGGGC 59.777 63.158 0.97 0.97 42.33 5.19
454 456 0.911525 TGGAGAGGAAGAAGCCAGGG 60.912 60.000 0.00 0.00 0.00 4.45
455 457 0.987294 TTGGAGAGGAAGAAGCCAGG 59.013 55.000 0.00 0.00 0.00 4.45
456 458 2.431454 GTTTGGAGAGGAAGAAGCCAG 58.569 52.381 0.00 0.00 0.00 4.85
484 494 4.899516 GTTTTCGAAAAATTTGCGGGTTT 58.100 34.783 24.04 0.00 0.00 3.27
523 533 4.548513 CGGGAGGAGGGAGGGAGG 62.549 77.778 0.00 0.00 0.00 4.30
956 966 0.463620 GGAGGTGTGAGATGAGAGGC 59.536 60.000 0.00 0.00 0.00 4.70
957 967 1.118838 GGGAGGTGTGAGATGAGAGG 58.881 60.000 0.00 0.00 0.00 3.69
958 968 1.480137 GTGGGAGGTGTGAGATGAGAG 59.520 57.143 0.00 0.00 0.00 3.20
959 969 1.561643 GTGGGAGGTGTGAGATGAGA 58.438 55.000 0.00 0.00 0.00 3.27
979 989 1.534729 GGATTAATCCGGTGGATGGC 58.465 55.000 18.61 0.00 42.27 4.40
989 999 1.614317 CCAGATGCGGGGGATTAATCC 60.614 57.143 24.14 24.14 46.41 3.01
992 1002 1.150536 GCCAGATGCGGGGGATTAA 59.849 57.895 0.00 0.00 0.00 1.40
1436 1473 3.984732 GGTGAGCCCCCAAAGCCT 61.985 66.667 0.00 0.00 0.00 4.58
1441 1478 2.763215 GTCATGGTGAGCCCCCAA 59.237 61.111 0.00 0.00 35.14 4.12
1753 1790 3.004315 TCTTGGAAATTGTGAGGCGTTTC 59.996 43.478 0.00 0.00 0.00 2.78
1792 1829 2.628559 CCATGGGTAGGAGGTTCCAGTA 60.629 54.545 2.85 0.00 39.61 2.74
1802 1839 0.551377 TTGGAAGGCCATGGGTAGGA 60.551 55.000 15.13 0.00 45.46 2.94
1822 1859 4.631813 AGAGTGAAACGAATGATAACTGCC 59.368 41.667 0.00 0.00 45.86 4.85
1829 1866 4.543590 AGACCAGAGTGAAACGAATGAT 57.456 40.909 0.00 0.00 45.86 2.45
1842 1887 5.178797 ACGGAAATTGACATTAGACCAGAG 58.821 41.667 0.00 0.00 0.00 3.35
1888 1933 0.179000 GCCTGTCTATCCCCACAGTG 59.821 60.000 0.00 0.00 38.74 3.66
1894 1939 3.893324 GGGAGCCTGTCTATCCCC 58.107 66.667 0.00 0.00 46.03 4.81
1916 1961 4.915298 CAGAGACAGCTGCTCCAG 57.085 61.111 25.09 17.88 32.82 3.86
2029 2074 4.803426 GGCTGGAGAGTGTCGGCG 62.803 72.222 0.00 0.00 0.00 6.46
2030 2075 4.803426 CGGCTGGAGAGTGTCGGC 62.803 72.222 0.00 0.00 0.00 5.54
2068 2113 0.868406 GGTGGCTGTTGAAGAACTCG 59.132 55.000 0.00 0.00 32.79 4.18
2131 2176 0.322975 GGCTGTTCTTCTGGCAGAGA 59.677 55.000 17.91 13.96 39.60 3.10
2140 2185 3.737774 GCACATTTTTCAGGCTGTTCTTC 59.262 43.478 15.27 0.00 0.00 2.87
2185 2230 0.443869 CGTGAAGTGAAAGGATGCGG 59.556 55.000 0.00 0.00 0.00 5.69
2206 2251 4.098349 ACAAATTAGCCATGCCATACACAG 59.902 41.667 0.00 0.00 0.00 3.66
2207 2252 4.022603 ACAAATTAGCCATGCCATACACA 58.977 39.130 0.00 0.00 0.00 3.72
2235 2280 0.439985 CGAGTCCAACTGCAATGTCG 59.560 55.000 0.00 0.00 0.00 4.35
2504 2550 0.532417 GCAAACATGGCCAAAGCACA 60.532 50.000 10.96 0.00 42.56 4.57
2515 2561 6.426980 TTGAGCTCAATAGTAGCAAACATG 57.573 37.500 25.16 0.00 42.62 3.21
2516 2562 7.555554 AGAATTGAGCTCAATAGTAGCAAACAT 59.444 33.333 35.78 19.29 45.06 2.71
2520 2600 5.295292 GCAGAATTGAGCTCAATAGTAGCAA 59.705 40.000 35.78 11.66 45.06 3.91
2690 2770 3.142404 GCAGGAGCAATGAAGTAAAGC 57.858 47.619 0.00 0.00 41.58 3.51
2724 2804 6.156519 GGAATCAAATACACAAGGGTTGAAC 58.843 40.000 0.00 0.00 32.36 3.18
2875 2965 1.284657 CAGCTGAGGCAACGACTATG 58.715 55.000 8.42 0.00 46.39 2.23
2876 2966 0.898320 ACAGCTGAGGCAACGACTAT 59.102 50.000 23.35 0.00 46.39 2.12
2882 2972 0.595825 GCAAACACAGCTGAGGCAAC 60.596 55.000 23.35 1.50 41.70 4.17
2917 3017 7.925483 CCACATCAACTTCAAAAGATAACCAAA 59.075 33.333 0.00 0.00 0.00 3.28
2936 3036 3.286329 AGCATAGCAATGTCCACATCA 57.714 42.857 0.00 0.00 35.10 3.07
2965 3065 7.066645 CGAACGGAGGGAGTATATATTATCACA 59.933 40.741 0.00 0.00 0.00 3.58
2975 3075 2.734755 TTCCGAACGGAGGGAGTATA 57.265 50.000 15.34 0.00 46.06 1.47
2977 3077 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
2978 3078 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
2979 3079 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
2980 3080 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
2981 3081 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
2982 3082 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
2983 3083 3.846360 AGACAAGTAATTCCGAACGGAG 58.154 45.455 15.34 5.60 46.06 4.63
2984 3084 3.671433 CGAGACAAGTAATTCCGAACGGA 60.671 47.826 12.04 12.04 43.52 4.69
2985 3085 2.597305 CGAGACAAGTAATTCCGAACGG 59.403 50.000 6.94 6.94 0.00 4.44
2986 3086 2.597305 CCGAGACAAGTAATTCCGAACG 59.403 50.000 0.00 0.00 0.00 3.95
2987 3087 3.841643 TCCGAGACAAGTAATTCCGAAC 58.158 45.455 0.00 0.00 0.00 3.95
2988 3088 4.730949 ATCCGAGACAAGTAATTCCGAA 57.269 40.909 0.00 0.00 0.00 4.30
2989 3089 5.278808 CCATATCCGAGACAAGTAATTCCGA 60.279 44.000 0.00 0.00 0.00 4.55
2990 3090 4.923871 CCATATCCGAGACAAGTAATTCCG 59.076 45.833 0.00 0.00 0.00 4.30
2991 3091 6.097915 TCCATATCCGAGACAAGTAATTCC 57.902 41.667 0.00 0.00 0.00 3.01
2992 3092 7.155328 ACATCCATATCCGAGACAAGTAATTC 58.845 38.462 0.00 0.00 0.00 2.17
2993 3093 7.067496 ACATCCATATCCGAGACAAGTAATT 57.933 36.000 0.00 0.00 0.00 1.40
2994 3094 6.672266 ACATCCATATCCGAGACAAGTAAT 57.328 37.500 0.00 0.00 0.00 1.89
2995 3095 7.670140 AGATACATCCATATCCGAGACAAGTAA 59.330 37.037 0.00 0.00 32.76 2.24
2996 3096 7.175797 AGATACATCCATATCCGAGACAAGTA 58.824 38.462 0.00 0.00 32.76 2.24
2997 3097 6.013379 AGATACATCCATATCCGAGACAAGT 58.987 40.000 0.00 0.00 32.76 3.16
2998 3098 6.522625 AGATACATCCATATCCGAGACAAG 57.477 41.667 0.00 0.00 32.76 3.16
2999 3099 7.402862 TCTAGATACATCCATATCCGAGACAA 58.597 38.462 0.00 0.00 32.76 3.18
3000 3100 6.958767 TCTAGATACATCCATATCCGAGACA 58.041 40.000 0.00 0.00 32.76 3.41
3001 3101 7.554835 AGTTCTAGATACATCCATATCCGAGAC 59.445 40.741 0.00 0.00 32.76 3.36
3002 3102 7.634718 AGTTCTAGATACATCCATATCCGAGA 58.365 38.462 0.00 0.00 32.76 4.04
3003 3103 7.873719 AGTTCTAGATACATCCATATCCGAG 57.126 40.000 0.00 0.00 32.76 4.63
3004 3104 9.749340 TTTAGTTCTAGATACATCCATATCCGA 57.251 33.333 0.00 0.00 32.76 4.55
3010 3110 8.915036 ACGTCTTTTAGTTCTAGATACATCCAT 58.085 33.333 0.00 0.00 0.00 3.41
3011 3111 8.289939 ACGTCTTTTAGTTCTAGATACATCCA 57.710 34.615 0.00 0.00 0.00 3.41
3012 3112 8.623030 AGACGTCTTTTAGTTCTAGATACATCC 58.377 37.037 13.58 0.00 0.00 3.51
3015 3115 9.881649 TCTAGACGTCTTTTAGTTCTAGATACA 57.118 33.333 25.44 0.00 32.48 2.29
3019 3119 9.881649 TGTATCTAGACGTCTTTTAGTTCTAGA 57.118 33.333 25.44 16.65 38.94 2.43
3022 3122 8.623030 GGATGTATCTAGACGTCTTTTAGTTCT 58.377 37.037 25.44 7.33 35.93 3.01
3023 3123 8.404000 TGGATGTATCTAGACGTCTTTTAGTTC 58.596 37.037 25.44 12.44 35.93 3.01
3024 3124 8.289939 TGGATGTATCTAGACGTCTTTTAGTT 57.710 34.615 25.44 12.44 35.93 2.24
3025 3125 7.876936 TGGATGTATCTAGACGTCTTTTAGT 57.123 36.000 25.44 8.46 35.93 2.24
3026 3126 9.751542 AAATGGATGTATCTAGACGTCTTTTAG 57.248 33.333 25.44 15.41 35.93 1.85
3027 3127 9.745880 GAAATGGATGTATCTAGACGTCTTTTA 57.254 33.333 25.44 9.99 35.93 1.52
3028 3128 8.478877 AGAAATGGATGTATCTAGACGTCTTTT 58.521 33.333 25.44 12.92 35.93 2.27
3029 3129 7.923344 CAGAAATGGATGTATCTAGACGTCTTT 59.077 37.037 25.44 11.68 35.93 2.52
3030 3130 7.429633 CAGAAATGGATGTATCTAGACGTCTT 58.570 38.462 25.44 8.59 35.93 3.01
3031 3131 6.515862 GCAGAAATGGATGTATCTAGACGTCT 60.516 42.308 23.66 23.66 35.93 4.18
3032 3132 5.631512 GCAGAAATGGATGTATCTAGACGTC 59.368 44.000 7.70 7.70 35.04 4.34
3033 3133 5.509840 GGCAGAAATGGATGTATCTAGACGT 60.510 44.000 0.00 0.00 0.00 4.34
3034 3134 4.926238 GGCAGAAATGGATGTATCTAGACG 59.074 45.833 0.00 0.00 0.00 4.18
3035 3135 5.858381 TGGCAGAAATGGATGTATCTAGAC 58.142 41.667 0.00 0.00 0.00 2.59
3036 3136 6.692849 ATGGCAGAAATGGATGTATCTAGA 57.307 37.500 0.00 0.00 0.00 2.43
3037 3137 8.099537 ACTTATGGCAGAAATGGATGTATCTAG 58.900 37.037 0.00 0.00 0.00 2.43
3038 3138 7.977818 ACTTATGGCAGAAATGGATGTATCTA 58.022 34.615 0.00 0.00 0.00 1.98
3039 3139 6.845908 ACTTATGGCAGAAATGGATGTATCT 58.154 36.000 0.00 0.00 0.00 1.98
3040 3140 8.621532 TTACTTATGGCAGAAATGGATGTATC 57.378 34.615 0.00 0.00 0.00 2.24
3041 3141 9.592196 AATTACTTATGGCAGAAATGGATGTAT 57.408 29.630 0.00 0.00 0.00 2.29
3042 3142 8.995027 AATTACTTATGGCAGAAATGGATGTA 57.005 30.769 0.00 0.00 0.00 2.29
3043 3143 7.014615 GGAATTACTTATGGCAGAAATGGATGT 59.985 37.037 0.00 0.00 0.00 3.06
3044 3144 7.373493 GGAATTACTTATGGCAGAAATGGATG 58.627 38.462 0.00 0.00 0.00 3.51
3045 3145 6.207417 CGGAATTACTTATGGCAGAAATGGAT 59.793 38.462 0.00 0.00 0.00 3.41
3046 3146 5.530915 CGGAATTACTTATGGCAGAAATGGA 59.469 40.000 0.00 0.00 0.00 3.41
3047 3147 5.530915 TCGGAATTACTTATGGCAGAAATGG 59.469 40.000 0.00 0.00 0.00 3.16
3048 3148 6.618287 TCGGAATTACTTATGGCAGAAATG 57.382 37.500 0.00 0.00 0.00 2.32
3049 3149 6.238374 CGTTCGGAATTACTTATGGCAGAAAT 60.238 38.462 0.00 0.00 0.00 2.17
3050 3150 5.064198 CGTTCGGAATTACTTATGGCAGAAA 59.936 40.000 0.00 0.00 0.00 2.52
3051 3151 4.569162 CGTTCGGAATTACTTATGGCAGAA 59.431 41.667 0.00 0.00 0.00 3.02
3052 3152 4.116961 CGTTCGGAATTACTTATGGCAGA 58.883 43.478 0.00 0.00 0.00 4.26
3053 3153 3.247648 CCGTTCGGAATTACTTATGGCAG 59.752 47.826 5.19 0.00 0.00 4.85
3054 3154 3.118702 TCCGTTCGGAATTACTTATGGCA 60.119 43.478 11.66 0.00 0.00 4.92
3055 3155 3.460103 TCCGTTCGGAATTACTTATGGC 58.540 45.455 11.66 0.00 0.00 4.40
3056 3156 4.056050 CCTCCGTTCGGAATTACTTATGG 58.944 47.826 14.79 5.82 33.41 2.74
3057 3157 4.056050 CCCTCCGTTCGGAATTACTTATG 58.944 47.826 14.79 0.64 33.41 1.90
3058 3158 3.962718 TCCCTCCGTTCGGAATTACTTAT 59.037 43.478 14.79 0.00 33.41 1.73
3059 3159 3.364549 TCCCTCCGTTCGGAATTACTTA 58.635 45.455 14.79 0.00 33.41 2.24
3060 3160 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
3061 3161 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
3062 3162 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
3063 3163 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
3064 3164 1.755380 CTACTCCCTCCGTTCGGAATT 59.245 52.381 14.79 0.00 33.41 2.17
3065 3165 1.341778 ACTACTCCCTCCGTTCGGAAT 60.342 52.381 14.79 2.09 33.41 3.01
3066 3166 0.038744 ACTACTCCCTCCGTTCGGAA 59.961 55.000 14.79 0.04 33.41 4.30
3067 3167 0.038744 AACTACTCCCTCCGTTCGGA 59.961 55.000 13.34 13.34 0.00 4.55
3068 3168 0.893447 AAACTACTCCCTCCGTTCGG 59.107 55.000 4.74 4.74 0.00 4.30
3069 3169 1.271656 ACAAACTACTCCCTCCGTTCG 59.728 52.381 0.00 0.00 0.00 3.95
3070 3170 2.036862 ACACAAACTACTCCCTCCGTTC 59.963 50.000 0.00 0.00 0.00 3.95
3071 3171 2.044758 ACACAAACTACTCCCTCCGTT 58.955 47.619 0.00 0.00 0.00 4.44
3072 3172 1.713297 ACACAAACTACTCCCTCCGT 58.287 50.000 0.00 0.00 0.00 4.69
3073 3173 2.833631 AACACAAACTACTCCCTCCG 57.166 50.000 0.00 0.00 0.00 4.63
3074 3174 3.181448 TGGAAACACAAACTACTCCCTCC 60.181 47.826 0.00 0.00 33.40 4.30
3075 3175 4.081322 TGGAAACACAAACTACTCCCTC 57.919 45.455 0.00 0.00 33.40 4.30
3101 3201 8.857694 TGGGTTTTGGTTTTATTGTTTTTGTA 57.142 26.923 0.00 0.00 0.00 2.41
3109 3209 8.669946 ACATAACTTGGGTTTTGGTTTTATTG 57.330 30.769 0.00 0.00 38.23 1.90
3113 3213 9.168451 CTTTTACATAACTTGGGTTTTGGTTTT 57.832 29.630 0.00 0.00 38.23 2.43
3127 3227 6.633500 TTGTTGAGCAGCTTTTACATAACT 57.367 33.333 0.00 0.00 0.00 2.24
3187 3287 4.141274 TCCCTTTGTCATGGACTTTTCTGA 60.141 41.667 0.00 0.00 33.15 3.27
3201 3301 4.287766 ACAAGATACCACTCCCTTTGTC 57.712 45.455 0.00 0.00 0.00 3.18
3228 3328 9.217278 AGATTGCTAAGCATAATATCACTTGAG 57.783 33.333 0.00 0.00 38.76 3.02
3245 3345 4.532126 TGGAAGAGGACAGAAGATTGCTAA 59.468 41.667 0.00 0.00 0.00 3.09
3260 3360 6.263168 ACAAAATTGTACTCAGTTGGAAGAGG 59.737 38.462 0.00 0.00 40.16 3.69
3301 3403 6.421202 GCAACTGTATACTGGCTAGTGAATAC 59.579 42.308 13.76 13.59 37.78 1.89
3319 3421 4.945543 TGAGCATCATCTTATTGCAACTGT 59.054 37.500 0.00 0.00 42.56 3.55
3337 3439 6.881570 TGAATCATGTCTTTAGATCTGAGCA 58.118 36.000 5.18 6.52 0.00 4.26
3433 3563 2.225343 ACTGGGGGATGCAAGATTGAAA 60.225 45.455 0.00 0.00 0.00 2.69
3456 3586 3.765511 CCCATTGTCCATTGTGATCTTGT 59.234 43.478 0.00 0.00 0.00 3.16
3462 3592 1.826096 CATGCCCATTGTCCATTGTGA 59.174 47.619 0.00 0.00 0.00 3.58
3465 3595 3.830744 AATCATGCCCATTGTCCATTG 57.169 42.857 0.00 0.00 0.00 2.82
3466 3596 4.903049 ACATAATCATGCCCATTGTCCATT 59.097 37.500 0.00 0.00 35.39 3.16
3494 3624 8.773404 ACACAGGTCAGTTAATGAGTATTTAC 57.227 34.615 0.00 0.00 39.07 2.01
3509 3639 3.304928 GGATTGCAAGAAACACAGGTCAG 60.305 47.826 4.94 0.00 0.00 3.51
3510 3640 2.622942 GGATTGCAAGAAACACAGGTCA 59.377 45.455 4.94 0.00 0.00 4.02
3538 3668 6.115446 TCAAGCTTTGGACCTTGTATATGAG 58.885 40.000 0.00 0.00 39.47 2.90
3580 3710 6.071108 TGTTCAAGATGACAAAGGGTTTTTCA 60.071 34.615 0.00 0.00 0.00 2.69
3588 3718 5.651139 AGGATCATGTTCAAGATGACAAAGG 59.349 40.000 0.00 0.00 32.68 3.11
3594 3724 5.183530 ACCAAGGATCATGTTCAAGATGA 57.816 39.130 0.00 0.00 34.37 2.92
3605 3735 3.287867 AATCGCAGAACCAAGGATCAT 57.712 42.857 0.00 0.00 43.58 2.45
3606 3736 2.749076 CAAATCGCAGAACCAAGGATCA 59.251 45.455 0.00 0.00 43.58 2.92
3607 3737 3.009723 TCAAATCGCAGAACCAAGGATC 58.990 45.455 0.00 0.00 43.58 3.36
3608 3738 3.071874 TCAAATCGCAGAACCAAGGAT 57.928 42.857 0.00 0.00 43.58 3.24
3610 3740 3.504863 CAATCAAATCGCAGAACCAAGG 58.495 45.455 0.00 0.00 43.58 3.61
3613 3743 1.818060 CCCAATCAAATCGCAGAACCA 59.182 47.619 0.00 0.00 43.58 3.67
3614 3744 2.091541 TCCCAATCAAATCGCAGAACC 58.908 47.619 0.00 0.00 43.58 3.62
3615 3745 2.749621 AGTCCCAATCAAATCGCAGAAC 59.250 45.455 0.00 0.00 43.58 3.01
3616 3746 3.071874 AGTCCCAATCAAATCGCAGAA 57.928 42.857 0.00 0.00 43.58 3.02
3618 3748 3.797039 TCTAGTCCCAATCAAATCGCAG 58.203 45.455 0.00 0.00 0.00 5.18
3619 3749 3.904800 TCTAGTCCCAATCAAATCGCA 57.095 42.857 0.00 0.00 0.00 5.10
3620 3750 6.861065 TTAATCTAGTCCCAATCAAATCGC 57.139 37.500 0.00 0.00 0.00 4.58
3683 4594 8.225416 TCCTACTCATATATGTGACTGTTAGGT 58.775 37.037 19.07 7.21 0.00 3.08
3684 4595 8.516234 GTCCTACTCATATATGTGACTGTTAGG 58.484 40.741 19.07 17.06 0.00 2.69
3685 4596 9.290988 AGTCCTACTCATATATGTGACTGTTAG 57.709 37.037 19.07 10.56 0.00 2.34
3686 4597 9.067986 CAGTCCTACTCATATATGTGACTGTTA 57.932 37.037 24.24 10.28 33.73 2.41
3687 4598 7.470702 GCAGTCCTACTCATATATGTGACTGTT 60.471 40.741 27.79 12.69 38.67 3.16
3688 4599 6.015856 GCAGTCCTACTCATATATGTGACTGT 60.016 42.308 27.79 18.04 38.67 3.55
3689 4600 6.208402 AGCAGTCCTACTCATATATGTGACTG 59.792 42.308 25.97 25.97 39.21 3.51
3727 4638 8.078596 GGATACAATCATTCAGTGAATAAAGGC 58.921 37.037 17.86 3.91 40.97 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.