Multiple sequence alignment - TraesCS3A01G108500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G108500 chr3A 100.000 5237 0 0 1 5237 74240729 74235493 0.000000e+00 9672.0
1 TraesCS3A01G108500 chr3A 94.444 90 5 0 665 754 74339897 74339808 7.070000e-29 139.0
2 TraesCS3A01G108500 chr3D 94.693 2280 113 4 1457 3735 64181164 64178892 0.000000e+00 3533.0
3 TraesCS3A01G108500 chr3D 88.847 798 31 25 668 1458 64181950 64181204 0.000000e+00 928.0
4 TraesCS3A01G108500 chr3D 90.213 705 58 5 3808 4512 64178887 64178194 0.000000e+00 909.0
5 TraesCS3A01G108500 chr3D 91.781 292 20 2 4588 4878 64178186 64177898 2.270000e-108 403.0
6 TraesCS3A01G108500 chr3D 85.714 336 41 5 331 665 552758841 552759170 1.080000e-91 348.0
7 TraesCS3A01G108500 chr3D 95.238 84 4 0 3503 3586 64179039 64179122 3.290000e-27 134.0
8 TraesCS3A01G108500 chr3D 85.938 64 6 3 3802 3863 533339347 533339409 1.220000e-06 65.8
9 TraesCS3A01G108500 chr3D 85.185 54 6 2 3811 3863 533398827 533398879 3.000000e-03 54.7
10 TraesCS3A01G108500 chr3B 92.817 1963 95 15 1578 3523 106285183 106283250 0.000000e+00 2802.0
11 TraesCS3A01G108500 chr3B 91.878 948 70 6 3563 4510 106283250 106282310 0.000000e+00 1317.0
12 TraesCS3A01G108500 chr3B 87.618 638 53 12 668 1295 106286258 106285637 0.000000e+00 717.0
13 TraesCS3A01G108500 chr3B 94.137 307 16 2 4507 4812 106282274 106281969 2.860000e-127 466.0
14 TraesCS3A01G108500 chr3B 87.222 180 17 4 5062 5236 106281657 106281479 3.200000e-47 200.0
15 TraesCS3A01G108500 chr3B 86.992 123 11 1 1457 1579 106285382 106285265 3.290000e-27 134.0
16 TraesCS3A01G108500 chr3B 100.000 29 0 0 124 152 8873026 8873054 3.000000e-03 54.7
17 TraesCS3A01G108500 chr4D 91.958 659 33 9 15 667 499840916 499841560 0.000000e+00 905.0
18 TraesCS3A01G108500 chr7B 91.207 671 45 8 1 667 61556629 61557289 0.000000e+00 900.0
19 TraesCS3A01G108500 chr1A 89.552 670 51 8 1 667 255004920 255005573 0.000000e+00 832.0
20 TraesCS3A01G108500 chr1A 94.521 73 4 0 3514 3586 256814056 256813984 4.290000e-21 113.0
21 TraesCS3A01G108500 chr2A 88.988 672 45 14 1 667 11348520 11349167 0.000000e+00 804.0
22 TraesCS3A01G108500 chr7A 90.248 564 41 6 101 664 35515134 35515683 0.000000e+00 725.0
23 TraesCS3A01G108500 chr6B 84.967 459 53 3 232 675 93645236 93644779 8.000000e-123 451.0
24 TraesCS3A01G108500 chr2D 83.951 324 51 1 342 664 345515622 345515299 5.090000e-80 309.0
25 TraesCS3A01G108500 chr5D 83.475 236 39 0 429 664 319113074 319112839 2.460000e-53 220.0
26 TraesCS3A01G108500 chr5D 92.857 84 6 0 3503 3586 484570988 484571071 7.120000e-24 122.0
27 TraesCS3A01G108500 chr5D 100.000 28 0 0 3811 3838 352932475 352932448 9.000000e-03 52.8
28 TraesCS3A01G108500 chr1B 79.828 233 20 12 1 209 33847546 33847317 1.520000e-30 145.0
29 TraesCS3A01G108500 chr1B 90.476 42 4 0 3802 3843 358017752 358017793 7.330000e-04 56.5
30 TraesCS3A01G108500 chr4A 91.579 95 8 0 3496 3590 565436115 565436209 1.180000e-26 132.0
31 TraesCS3A01G108500 chr5B 92.941 85 6 0 3502 3586 163260732 163260648 1.980000e-24 124.0
32 TraesCS3A01G108500 chr5B 88.506 87 10 0 3500 3586 548691000 548690914 7.170000e-19 106.0
33 TraesCS3A01G108500 chr6D 90.909 88 5 3 3503 3590 5323304 5323220 1.190000e-21 115.0
34 TraesCS3A01G108500 chr6D 94.286 35 1 1 3804 3838 33901522 33901489 9.000000e-03 52.8
35 TraesCS3A01G108500 chr6A 87.640 89 7 1 3502 3586 511034407 511034319 3.340000e-17 100.0
36 TraesCS3A01G108500 chr7D 83.607 61 7 2 3808 3867 259291275 259291333 3.000000e-03 54.7
37 TraesCS3A01G108500 chr5A 87.234 47 5 1 3811 3857 452934739 452934784 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G108500 chr3A 74235493 74240729 5236 True 9672.000000 9672 100.000000 1 5237 1 chr3A.!!$R1 5236
1 TraesCS3A01G108500 chr3D 64177898 64181950 4052 True 1443.250000 3533 91.383500 668 4878 4 chr3D.!!$R1 4210
2 TraesCS3A01G108500 chr3B 106281479 106286258 4779 True 939.333333 2802 90.110667 668 5236 6 chr3B.!!$R1 4568
3 TraesCS3A01G108500 chr4D 499840916 499841560 644 False 905.000000 905 91.958000 15 667 1 chr4D.!!$F1 652
4 TraesCS3A01G108500 chr7B 61556629 61557289 660 False 900.000000 900 91.207000 1 667 1 chr7B.!!$F1 666
5 TraesCS3A01G108500 chr1A 255004920 255005573 653 False 832.000000 832 89.552000 1 667 1 chr1A.!!$F1 666
6 TraesCS3A01G108500 chr2A 11348520 11349167 647 False 804.000000 804 88.988000 1 667 1 chr2A.!!$F1 666
7 TraesCS3A01G108500 chr7A 35515134 35515683 549 False 725.000000 725 90.248000 101 664 1 chr7A.!!$F1 563

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
916 934 0.250295 TTTTGTCCCCTCAGCTGTCG 60.250 55.0 14.67 6.20 0.00 4.35 F
967 991 0.395312 TCCAGTCGTTTCCCCTTGAC 59.605 55.0 0.00 0.00 0.00 3.18 F
975 1001 0.560688 TTTCCCCTTGACCTGCCTTT 59.439 50.0 0.00 0.00 0.00 3.11 F
2493 2737 1.303309 GTCTAGACATGCATGTGGCC 58.697 55.0 35.92 21.43 41.95 5.36 F
3679 3923 0.179217 CAATGCACCATGACGACACG 60.179 55.0 0.00 0.00 0.00 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2088 2322 1.263356 CTAGTTCCCGTGTCTTCCCA 58.737 55.000 0.00 0.0 0.0 4.37 R
2638 2882 1.469767 CCTGCGACGACATCTTCATCA 60.470 52.381 0.00 0.0 0.0 3.07 R
2739 2983 2.863809 ACCTCACCATTTGTCCTGAAC 58.136 47.619 0.00 0.0 0.0 3.18 R
4150 4394 0.459899 TCCGCATGCTTGACGACTAT 59.540 50.000 17.13 0.0 0.0 2.12 R
5007 5426 0.101759 TAGATTACAGTGCGCCGACC 59.898 55.000 4.18 0.0 0.0 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
94 98 2.528564 AGGATCAGCTAGAGATGCTCC 58.471 52.381 9.18 9.18 44.45 4.70
97 101 3.261390 GGATCAGCTAGAGATGCTCCAAT 59.739 47.826 11.74 0.00 43.80 3.16
219 223 1.279271 GACCCACTCATTACCAGTGCT 59.721 52.381 0.00 0.00 40.10 4.40
220 224 1.705186 ACCCACTCATTACCAGTGCTT 59.295 47.619 0.00 0.00 40.10 3.91
223 227 1.394917 CACTCATTACCAGTGCTTCGC 59.605 52.381 0.00 0.00 35.15 4.70
224 228 1.276421 ACTCATTACCAGTGCTTCGCT 59.724 47.619 0.00 0.00 0.00 4.93
225 229 1.662629 CTCATTACCAGTGCTTCGCTG 59.337 52.381 0.71 0.71 41.13 5.18
230 234 2.974148 CAGTGCTTCGCTGGTGCA 60.974 61.111 0.00 0.00 38.21 4.57
250 254 1.071228 ACTCGGGCCGTCTTTAGTTTT 59.929 47.619 27.32 0.00 0.00 2.43
254 258 3.196254 TCGGGCCGTCTTTAGTTTTATCT 59.804 43.478 27.32 0.00 0.00 1.98
257 261 4.259356 GGCCGTCTTTAGTTTTATCTGGT 58.741 43.478 0.00 0.00 0.00 4.00
263 267 6.255020 CGTCTTTAGTTTTATCTGGTATGCGT 59.745 38.462 0.00 0.00 0.00 5.24
292 296 1.136690 CAGTCGTTGTTCTTGCGCTA 58.863 50.000 9.73 0.00 0.00 4.26
327 331 3.528853 TGCTTGGCCATAGCATGC 58.471 55.556 27.96 10.51 43.30 4.06
351 355 1.647346 GACGTTGCATTCGGGACATA 58.353 50.000 14.46 0.00 0.00 2.29
388 392 5.365619 CCAATCATCACATGAGAGACATCA 58.634 41.667 0.00 0.00 43.53 3.07
431 435 6.376864 TGTTATGATCCACCAATCGACATTTT 59.623 34.615 0.00 0.00 0.00 1.82
507 519 2.234168 TGGGTTGGTTCAATCATGCATG 59.766 45.455 21.07 21.07 0.00 4.06
562 579 0.676782 GGTTCACAATAGCGGCCAGT 60.677 55.000 2.24 0.00 0.00 4.00
591 608 3.181485 GCTGTTACTCATAGCGTCCTTCT 60.181 47.826 0.00 0.00 0.00 2.85
609 627 8.482429 CGTCCTTCTCATTTTTCAAAATTTCAG 58.518 33.333 0.00 0.00 36.52 3.02
708 726 2.978489 GAGGTAGAACTGAACGACAACG 59.022 50.000 0.00 0.00 45.75 4.10
780 798 2.439156 AGCGCTCCCAGCCAAATC 60.439 61.111 2.64 0.00 38.18 2.17
864 882 4.115199 CCCCGCCTTTCCCCTGAG 62.115 72.222 0.00 0.00 0.00 3.35
865 883 4.803908 CCCGCCTTTCCCCTGAGC 62.804 72.222 0.00 0.00 0.00 4.26
866 884 3.721706 CCGCCTTTCCCCTGAGCT 61.722 66.667 0.00 0.00 0.00 4.09
867 885 2.124942 CGCCTTTCCCCTGAGCTC 60.125 66.667 6.82 6.82 0.00 4.09
880 898 4.190772 CCCTGAGCTCTCAAATCTTCTTC 58.809 47.826 16.19 0.00 39.39 2.87
902 920 2.116827 TGGGCGGTCGAATATTTTGT 57.883 45.000 0.00 0.00 0.00 2.83
903 921 2.011222 TGGGCGGTCGAATATTTTGTC 58.989 47.619 0.00 0.00 0.00 3.18
908 926 2.870411 CGGTCGAATATTTTGTCCCCTC 59.130 50.000 0.00 0.00 0.00 4.30
909 927 3.680475 CGGTCGAATATTTTGTCCCCTCA 60.680 47.826 0.00 0.00 0.00 3.86
910 928 3.877508 GGTCGAATATTTTGTCCCCTCAG 59.122 47.826 0.00 0.00 0.00 3.35
911 929 3.312697 GTCGAATATTTTGTCCCCTCAGC 59.687 47.826 0.00 0.00 0.00 4.26
912 930 3.199946 TCGAATATTTTGTCCCCTCAGCT 59.800 43.478 0.00 0.00 0.00 4.24
913 931 3.313526 CGAATATTTTGTCCCCTCAGCTG 59.686 47.826 7.63 7.63 0.00 4.24
914 932 4.273318 GAATATTTTGTCCCCTCAGCTGT 58.727 43.478 14.67 0.00 0.00 4.40
915 933 2.206576 ATTTTGTCCCCTCAGCTGTC 57.793 50.000 14.67 0.00 0.00 3.51
916 934 0.250295 TTTTGTCCCCTCAGCTGTCG 60.250 55.000 14.67 6.20 0.00 4.35
949 973 1.001633 TCCCCGCTAACTGTTTCAGTC 59.998 52.381 0.00 0.00 44.62 3.51
955 979 2.731976 GCTAACTGTTTCAGTCCAGTCG 59.268 50.000 0.00 0.00 44.62 4.18
967 991 0.395312 TCCAGTCGTTTCCCCTTGAC 59.605 55.000 0.00 0.00 0.00 3.18
975 1001 0.560688 TTTCCCCTTGACCTGCCTTT 59.439 50.000 0.00 0.00 0.00 3.11
1230 1257 5.163602 TGTTTGTTAATCACAGGAAGCGTTT 60.164 36.000 0.00 0.00 36.48 3.60
1258 1285 3.807553 TCAGTTCTTGTGTTCATGCTCA 58.192 40.909 0.00 0.00 0.00 4.26
1289 1316 4.677584 GTCAGCCTATTGACAGTAGACAG 58.322 47.826 6.56 0.00 45.32 3.51
1303 1330 6.505272 ACAGTAGACAGTTAGTTTCTGTGTC 58.495 40.000 3.29 0.00 44.68 3.67
1305 1332 6.418226 CAGTAGACAGTTAGTTTCTGTGTCAC 59.582 42.308 3.29 0.00 44.68 3.67
1306 1333 5.339008 AGACAGTTAGTTTCTGTGTCACA 57.661 39.130 5.36 5.36 44.68 3.58
1307 1334 5.918608 AGACAGTTAGTTTCTGTGTCACAT 58.081 37.500 6.03 0.00 44.68 3.21
1309 1336 5.918608 ACAGTTAGTTTCTGTGTCACATCT 58.081 37.500 6.03 5.87 43.32 2.90
1311 1338 7.497595 ACAGTTAGTTTCTGTGTCACATCTTA 58.502 34.615 6.03 0.00 43.32 2.10
1312 1339 7.653713 ACAGTTAGTTTCTGTGTCACATCTTAG 59.346 37.037 6.03 0.00 43.32 2.18
1313 1340 7.653713 CAGTTAGTTTCTGTGTCACATCTTAGT 59.346 37.037 6.03 0.00 0.00 2.24
1320 1347 9.856488 TTTCTGTGTCACATCTTAGTATCTTAC 57.144 33.333 6.03 0.00 0.00 2.34
1337 1364 5.801531 TCTTACTGTGGAGAAAGTAGCAA 57.198 39.130 0.00 0.00 30.85 3.91
1386 1421 7.337938 TGATGTTTGATGGAGTACATGTACAT 58.662 34.615 32.02 19.83 40.72 2.29
1431 1499 7.754091 TGAATCAAGCATAGGATGGGATATA 57.246 36.000 0.00 0.00 0.00 0.86
1447 1515 7.931015 TGGGATATATCAGTTTGGAACTAGT 57.069 36.000 14.60 0.00 40.46 2.57
1449 1517 9.090103 TGGGATATATCAGTTTGGAACTAGTAG 57.910 37.037 14.60 0.00 40.46 2.57
1488 1632 6.976088 ACATATCGGTCATGAGAAACTAGAG 58.024 40.000 0.00 0.00 0.00 2.43
1494 1638 7.506971 TCGGTCATGAGAAACTAGAGATACTA 58.493 38.462 0.00 0.00 0.00 1.82
1568 1712 8.895737 GTGTTATTTTATCGGGATTCAGGTTAA 58.104 33.333 0.00 0.00 0.00 2.01
1658 1889 2.354729 CCCGATGCCTTTGGTCCA 59.645 61.111 0.00 0.00 0.00 4.02
1714 1945 6.857777 TTCAGTTGGCAATTTTATGTTTGG 57.142 33.333 1.92 0.00 0.00 3.28
1717 1948 2.693069 TGGCAATTTTATGTTTGGCCG 58.307 42.857 0.00 0.00 45.03 6.13
1968 2202 6.129717 CGACAACTTTGATTTGAATCGTTGTC 60.130 38.462 25.88 25.88 46.53 3.18
1976 2210 9.958234 TTTGATTTGAATCGTTGTCATTCTTTA 57.042 25.926 0.00 0.00 38.26 1.85
2088 2322 5.485708 AGAGAAGGGTACTAGCTTGTCAAAT 59.514 40.000 3.45 0.00 0.00 2.32
2154 2388 2.047274 CGGTCTGTTGCATCGGGT 60.047 61.111 3.79 0.00 0.00 5.28
2218 2452 5.671329 GCTGTAAGAATTCCTTGTGCTTACG 60.671 44.000 0.65 0.00 42.17 3.18
2337 2571 8.839310 ATAAAGAATTCTGGGAATCGTATCAG 57.161 34.615 9.17 0.00 0.00 2.90
2493 2737 1.303309 GTCTAGACATGCATGTGGCC 58.697 55.000 35.92 21.43 41.95 5.36
2571 2815 6.968131 TGTCACCTCATAAGAAATTTCTCG 57.032 37.500 20.71 12.41 36.28 4.04
2589 2833 7.772332 TTTCTCGTTCTAAGAGATTATTGCC 57.228 36.000 0.00 0.00 43.39 4.52
2739 2983 0.689080 TGGGAAGGAGAGCTGCCTAG 60.689 60.000 5.21 0.00 33.76 3.02
2770 3014 5.838521 ACAAATGGTGAGGTTTAAAGGTCAT 59.161 36.000 3.38 0.00 0.00 3.06
2817 3061 5.127682 GGTGCTCAAGGATATGTTTGGATTT 59.872 40.000 0.00 0.00 0.00 2.17
2865 3109 4.327357 AGTTATTTGTGCGATGTCTTCTCG 59.673 41.667 0.00 0.00 39.11 4.04
2909 3153 5.826208 GGAATGGGGTAATTTCTATTCGTGT 59.174 40.000 0.00 0.00 0.00 4.49
2921 3165 6.769134 TTCTATTCGTGTCATCTTCCAGTA 57.231 37.500 0.00 0.00 0.00 2.74
2930 3174 6.980978 CGTGTCATCTTCCAGTAACTGAATAT 59.019 38.462 0.00 0.00 32.44 1.28
3098 3342 4.302559 AGGTGAAATTGTAAGGAGGGTC 57.697 45.455 0.00 0.00 0.00 4.46
3131 3375 3.256558 GTCCTTGCAATCTGCCATTTTC 58.743 45.455 0.00 0.00 44.23 2.29
3197 3441 1.892209 ACGTTGTTTCCCTAGCCTTG 58.108 50.000 0.00 0.00 0.00 3.61
3198 3442 1.142262 ACGTTGTTTCCCTAGCCTTGT 59.858 47.619 0.00 0.00 0.00 3.16
3201 3445 0.476338 TGTTTCCCTAGCCTTGTGCA 59.524 50.000 0.00 0.00 44.83 4.57
3204 3448 0.324943 TTCCCTAGCCTTGTGCAGTC 59.675 55.000 0.00 0.00 44.83 3.51
3208 3452 1.409064 CCTAGCCTTGTGCAGTCGATA 59.591 52.381 0.00 0.00 44.83 2.92
3287 3531 5.047092 CAGGGTTTCTTTCAAATGCATACCT 60.047 40.000 0.00 0.00 0.00 3.08
3448 3692 3.761657 AGTGCATGTTATTGTTGATGCG 58.238 40.909 0.00 0.00 43.43 4.73
3511 3755 1.340991 TGGCAAAATGCTACTCCCTCC 60.341 52.381 2.00 0.00 44.28 4.30
3512 3756 1.340991 GGCAAAATGCTACTCCCTCCA 60.341 52.381 2.00 0.00 44.28 3.86
3529 3773 5.669904 TCCCTCCAATCCATAATAAGTGTCA 59.330 40.000 0.00 0.00 0.00 3.58
3531 3775 6.356556 CCTCCAATCCATAATAAGTGTCACA 58.643 40.000 5.62 0.00 0.00 3.58
3545 3789 5.813080 AGTGTCACAGTTTTGAACTAACC 57.187 39.130 5.62 0.00 40.46 2.85
3578 3822 2.675844 CCGCGACACTTATTTTGGATCA 59.324 45.455 8.23 0.00 0.00 2.92
3586 3830 4.578105 CACTTATTTTGGATCAGAGGGAGC 59.422 45.833 0.00 0.00 0.00 4.70
3631 3875 6.473455 GCATGTGCTGATAAATCTGGTTTTAC 59.527 38.462 0.00 0.00 38.21 2.01
3679 3923 0.179217 CAATGCACCATGACGACACG 60.179 55.000 0.00 0.00 0.00 4.49
3693 3937 0.802607 GACACGCCCGATCTGAAGAC 60.803 60.000 0.00 0.00 0.00 3.01
3712 3956 6.094048 TGAAGACAGTGGAAGAAAAACTGAAG 59.906 38.462 8.90 0.00 43.22 3.02
3751 3995 1.002576 TGACTTTGTGAGCATTGCACG 60.003 47.619 11.91 0.00 39.07 5.34
3768 4012 1.127951 CACGGCGGTCATACTGAAAAC 59.872 52.381 13.24 0.00 0.00 2.43
3797 4041 6.974932 ACTAGTTCTATGCACACATTGAAG 57.025 37.500 0.00 0.00 44.82 3.02
3802 4046 4.847198 TCTATGCACACATTGAAGGTGAT 58.153 39.130 17.42 2.56 39.53 3.06
3823 4067 0.673333 TGGTAAGGCTGTGTGCATCG 60.673 55.000 0.00 0.00 45.15 3.84
3842 4086 1.519246 CTTGATGCAGAGGCGAGGA 59.481 57.895 0.00 0.00 45.35 3.71
3866 4110 7.607607 GGATGTTGCCCTCTTTTTGAAAATAAT 59.392 33.333 0.00 0.00 0.00 1.28
3892 4136 6.387041 AATTGAAGTGAGATGGTATGCATG 57.613 37.500 10.16 0.00 0.00 4.06
3942 4186 1.405821 ACGCGGAAAATGGTTGTTGAA 59.594 42.857 12.47 0.00 0.00 2.69
3968 4212 2.699954 CGACATTGTAGCAAGAAGGGT 58.300 47.619 0.00 0.00 0.00 4.34
3969 4213 2.416547 CGACATTGTAGCAAGAAGGGTG 59.583 50.000 0.00 0.00 0.00 4.61
4020 4264 0.987294 TCCTCAAGAAGCTTGGGAGG 59.013 55.000 22.73 22.73 45.15 4.30
4084 4328 2.557490 GGAGGACTGTTCGAACACTACT 59.443 50.000 26.53 22.38 34.70 2.57
4122 4366 8.635765 AATGCTTGGAAACTACTCTAAATGAA 57.364 30.769 0.00 0.00 0.00 2.57
4150 4394 1.825474 GGGAGGAGTCATCGAAGTTCA 59.175 52.381 3.32 0.00 0.00 3.18
4164 4408 3.859961 CGAAGTTCATAGTCGTCAAGCAT 59.140 43.478 3.32 0.00 0.00 3.79
4218 4462 2.291209 TTGCTGCTTCCCAATCTCAA 57.709 45.000 0.00 0.00 0.00 3.02
4251 4495 5.874810 TGTTGAATAACAGTAGGCAAGCTAG 59.125 40.000 0.00 0.00 41.66 3.42
4300 4544 1.093496 GGGGTGAAGGATAAACGGCG 61.093 60.000 4.80 4.80 0.00 6.46
4321 4565 3.741075 CGCCTAATTCTCCAGCATGTACA 60.741 47.826 0.00 0.00 0.00 2.90
4322 4566 3.561725 GCCTAATTCTCCAGCATGTACAC 59.438 47.826 0.00 0.00 0.00 2.90
4323 4567 4.684485 GCCTAATTCTCCAGCATGTACACT 60.684 45.833 0.00 0.00 0.00 3.55
4324 4568 5.431765 CCTAATTCTCCAGCATGTACACTT 58.568 41.667 0.00 0.00 0.00 3.16
4325 4569 6.582636 CCTAATTCTCCAGCATGTACACTTA 58.417 40.000 0.00 0.00 0.00 2.24
4326 4570 7.047891 CCTAATTCTCCAGCATGTACACTTAA 58.952 38.462 0.00 0.00 0.00 1.85
4327 4571 6.992063 AATTCTCCAGCATGTACACTTAAG 57.008 37.500 0.00 0.00 0.00 1.85
4337 4581 5.935789 GCATGTACACTTAAGAGTTTACCCA 59.064 40.000 10.09 1.29 37.96 4.51
4340 4584 7.069877 TGTACACTTAAGAGTTTACCCATGT 57.930 36.000 10.09 1.48 37.96 3.21
4353 4597 3.154827 ACCCATGTTGGAACTGTAAGG 57.845 47.619 0.00 0.00 40.96 2.69
4364 4609 1.286248 ACTGTAAGGGGTCCATGACC 58.714 55.000 4.65 4.65 44.70 4.02
4365 4610 2.514493 ACTGTAAGGGGTCCATGACCG 61.514 57.143 7.15 0.00 45.72 4.79
4373 4618 1.668419 GGTCCATGACCGAAATGAGG 58.332 55.000 0.00 0.00 43.14 3.86
4374 4619 1.017387 GTCCATGACCGAAATGAGGC 58.983 55.000 0.00 0.00 0.00 4.70
4375 4620 0.911769 TCCATGACCGAAATGAGGCT 59.088 50.000 0.00 0.00 0.00 4.58
4393 4638 2.237392 GGCTTAGATGAGGTCACCTTGT 59.763 50.000 0.00 0.00 31.76 3.16
4447 4692 9.453572 ACTCATGAATCTGCAACTATCTTTTTA 57.546 29.630 0.00 0.00 0.00 1.52
4457 4702 9.683069 CTGCAACTATCTTTTTAAATCACAAGT 57.317 29.630 0.00 0.00 0.00 3.16
4558 4842 2.403252 ATTCCTACGCTCCAAACTGG 57.597 50.000 0.00 0.00 39.43 4.00
4561 4845 1.745489 CTACGCTCCAAACTGGCCC 60.745 63.158 0.00 0.00 37.47 5.80
4601 4885 5.897050 TGGACAAGGTTAATTTGTGAACAC 58.103 37.500 11.59 0.00 38.78 3.32
4636 4920 8.798859 AAAAGCTCATCAAACTGACATACTAT 57.201 30.769 0.00 0.00 0.00 2.12
4637 4921 7.783090 AAGCTCATCAAACTGACATACTATG 57.217 36.000 0.00 0.00 0.00 2.23
4639 4923 8.011844 AGCTCATCAAACTGACATACTATGTA 57.988 34.615 1.45 0.00 45.03 2.29
4640 4924 7.923344 AGCTCATCAAACTGACATACTATGTAC 59.077 37.037 1.45 0.00 45.03 2.90
4820 5105 6.018751 ACAATAATGGAGAAACATGTCGATCG 60.019 38.462 9.36 9.36 0.00 3.69
4832 5117 4.201891 ACATGTCGATCGTACCTCTGTAAC 60.202 45.833 15.94 2.10 0.00 2.50
4838 5123 0.798776 CGTACCTCTGTAACCGACGT 59.201 55.000 0.00 0.00 0.00 4.34
4841 5126 2.997485 ACCTCTGTAACCGACGTAAC 57.003 50.000 0.00 0.00 0.00 2.50
4857 5276 5.596268 ACGTAACGGTTCTAAATCAAACC 57.404 39.130 0.00 0.00 41.28 3.27
4864 5283 5.125417 ACGGTTCTAAATCAAACCATCCATG 59.875 40.000 5.25 0.00 44.25 3.66
4887 5306 2.795681 CGATTGTTCATGGCCCAATTCG 60.796 50.000 0.00 4.95 0.00 3.34
4895 5314 0.916086 TGGCCCAATTCGGTGATACT 59.084 50.000 0.00 0.00 0.00 2.12
4900 5319 3.311596 GCCCAATTCGGTGATACTTGTAC 59.688 47.826 0.00 0.00 0.00 2.90
4902 5321 4.938832 CCCAATTCGGTGATACTTGTACAA 59.061 41.667 8.28 8.28 0.00 2.41
4905 5324 6.799925 CCAATTCGGTGATACTTGTACAAAAC 59.200 38.462 10.03 3.58 0.00 2.43
4906 5325 7.308348 CCAATTCGGTGATACTTGTACAAAACT 60.308 37.037 10.03 0.00 0.00 2.66
4907 5326 8.714179 CAATTCGGTGATACTTGTACAAAACTA 58.286 33.333 10.03 0.17 0.00 2.24
4908 5327 7.642071 TTCGGTGATACTTGTACAAAACTAC 57.358 36.000 10.03 5.61 0.00 2.73
4909 5328 6.747125 TCGGTGATACTTGTACAAAACTACA 58.253 36.000 10.03 4.25 0.00 2.74
4910 5329 7.208777 TCGGTGATACTTGTACAAAACTACAA 58.791 34.615 10.03 0.00 35.70 2.41
4911 5330 7.169645 TCGGTGATACTTGTACAAAACTACAAC 59.830 37.037 10.03 8.23 33.84 3.32
4912 5331 7.042590 CGGTGATACTTGTACAAAACTACAACA 60.043 37.037 10.03 0.33 33.84 3.33
4914 5333 9.429600 GTGATACTTGTACAAAACTACAACAAC 57.570 33.333 10.03 0.00 33.84 3.32
4915 5334 9.386010 TGATACTTGTACAAAACTACAACAACT 57.614 29.630 10.03 0.00 33.84 3.16
4918 5337 8.331730 ACTTGTACAAAACTACAACAACTTCT 57.668 30.769 10.03 0.00 33.84 2.85
4919 5338 9.439500 ACTTGTACAAAACTACAACAACTTCTA 57.561 29.630 10.03 0.00 33.84 2.10
4926 5345 8.455682 CAAAACTACAACAACTTCTAAACTGGA 58.544 33.333 0.00 0.00 0.00 3.86
4927 5346 8.747538 AAACTACAACAACTTCTAAACTGGAT 57.252 30.769 0.00 0.00 0.00 3.41
4928 5347 9.841295 AAACTACAACAACTTCTAAACTGGATA 57.159 29.630 0.00 0.00 0.00 2.59
4930 5349 9.654663 ACTACAACAACTTCTAAACTGGATATC 57.345 33.333 0.00 0.00 0.00 1.63
4931 5350 9.653287 CTACAACAACTTCTAAACTGGATATCA 57.347 33.333 4.83 0.00 0.00 2.15
4932 5351 8.918202 ACAACAACTTCTAAACTGGATATCAA 57.082 30.769 4.83 0.00 0.00 2.57
4933 5352 9.520515 ACAACAACTTCTAAACTGGATATCAAT 57.479 29.630 4.83 0.00 0.00 2.57
4936 5355 9.614792 ACAACTTCTAAACTGGATATCAATACC 57.385 33.333 4.83 0.00 0.00 2.73
4937 5356 9.613428 CAACTTCTAAACTGGATATCAATACCA 57.387 33.333 4.83 0.00 0.00 3.25
4938 5357 9.614792 AACTTCTAAACTGGATATCAATACCAC 57.385 33.333 4.83 0.00 0.00 4.16
4939 5358 8.211629 ACTTCTAAACTGGATATCAATACCACC 58.788 37.037 4.83 0.00 0.00 4.61
4940 5359 7.074653 TCTAAACTGGATATCAATACCACCC 57.925 40.000 4.83 0.00 0.00 4.61
4941 5360 5.725551 AAACTGGATATCAATACCACCCA 57.274 39.130 4.83 0.00 0.00 4.51
4943 5362 5.930209 ACTGGATATCAATACCACCCATT 57.070 39.130 4.83 0.00 0.00 3.16
4944 5363 5.880901 ACTGGATATCAATACCACCCATTC 58.119 41.667 4.83 0.00 0.00 2.67
4948 5367 7.632861 TGGATATCAATACCACCCATTCTATG 58.367 38.462 4.83 0.00 0.00 2.23
4979 5398 5.371115 TTTTTCTTTTGAGATGGCTACGG 57.629 39.130 0.00 0.00 0.00 4.02
4980 5399 2.024176 TCTTTTGAGATGGCTACGGC 57.976 50.000 0.00 0.00 37.82 5.68
4981 5400 0.652592 CTTTTGAGATGGCTACGGCG 59.347 55.000 4.80 4.80 39.81 6.46
4982 5401 0.248012 TTTTGAGATGGCTACGGCGA 59.752 50.000 16.62 0.00 39.81 5.54
4983 5402 0.459585 TTTGAGATGGCTACGGCGAC 60.460 55.000 16.62 1.71 39.81 5.19
4984 5403 1.320344 TTGAGATGGCTACGGCGACT 61.320 55.000 16.62 0.00 39.81 4.18
4986 5405 0.872021 GAGATGGCTACGGCGACTTG 60.872 60.000 16.62 1.01 39.81 3.16
4987 5406 1.883084 GATGGCTACGGCGACTTGG 60.883 63.158 16.62 0.00 39.81 3.61
4988 5407 2.292794 GATGGCTACGGCGACTTGGA 62.293 60.000 16.62 0.00 39.81 3.53
4989 5408 1.686325 ATGGCTACGGCGACTTGGAT 61.686 55.000 16.62 0.00 39.81 3.41
4990 5409 1.883084 GGCTACGGCGACTTGGATG 60.883 63.158 16.62 0.00 39.81 3.51
4991 5410 1.883084 GCTACGGCGACTTGGATGG 60.883 63.158 16.62 0.00 0.00 3.51
4992 5411 1.515954 CTACGGCGACTTGGATGGT 59.484 57.895 16.62 0.00 0.00 3.55
4993 5412 0.742505 CTACGGCGACTTGGATGGTA 59.257 55.000 16.62 0.00 0.00 3.25
4994 5413 0.457035 TACGGCGACTTGGATGGTAC 59.543 55.000 16.62 0.00 0.00 3.34
4995 5414 1.255667 ACGGCGACTTGGATGGTACT 61.256 55.000 16.62 0.00 0.00 2.73
4996 5415 0.806102 CGGCGACTTGGATGGTACTG 60.806 60.000 0.00 0.00 0.00 2.74
4997 5416 1.090052 GGCGACTTGGATGGTACTGC 61.090 60.000 0.00 0.00 0.00 4.40
4998 5417 0.391130 GCGACTTGGATGGTACTGCA 60.391 55.000 0.00 0.00 0.00 4.41
4999 5418 1.743772 GCGACTTGGATGGTACTGCAT 60.744 52.381 0.00 0.00 0.00 3.96
5000 5419 1.935873 CGACTTGGATGGTACTGCATG 59.064 52.381 0.00 0.00 0.00 4.06
5001 5420 2.418609 CGACTTGGATGGTACTGCATGA 60.419 50.000 0.00 0.00 0.00 3.07
5002 5421 3.742327 CGACTTGGATGGTACTGCATGAT 60.742 47.826 0.00 0.00 0.00 2.45
5003 5422 4.202441 GACTTGGATGGTACTGCATGATT 58.798 43.478 0.00 0.00 0.00 2.57
5004 5423 5.368145 GACTTGGATGGTACTGCATGATTA 58.632 41.667 0.00 0.00 0.00 1.75
5005 5424 5.945310 ACTTGGATGGTACTGCATGATTAT 58.055 37.500 0.00 0.00 0.00 1.28
5006 5425 6.367983 ACTTGGATGGTACTGCATGATTATT 58.632 36.000 0.00 0.00 0.00 1.40
5007 5426 6.263842 ACTTGGATGGTACTGCATGATTATTG 59.736 38.462 0.00 0.00 0.00 1.90
5008 5427 5.072055 TGGATGGTACTGCATGATTATTGG 58.928 41.667 0.00 0.00 0.00 3.16
5009 5428 5.072741 GGATGGTACTGCATGATTATTGGT 58.927 41.667 0.00 0.00 0.00 3.67
5010 5429 5.182001 GGATGGTACTGCATGATTATTGGTC 59.818 44.000 0.00 0.00 0.00 4.02
5011 5430 4.126437 TGGTACTGCATGATTATTGGTCG 58.874 43.478 0.00 0.00 0.00 4.79
5012 5431 3.498397 GGTACTGCATGATTATTGGTCGG 59.502 47.826 0.00 0.00 0.00 4.79
5013 5432 1.949525 ACTGCATGATTATTGGTCGGC 59.050 47.619 0.00 0.00 0.00 5.54
5014 5433 0.943673 TGCATGATTATTGGTCGGCG 59.056 50.000 0.00 0.00 0.00 6.46
5015 5434 0.385974 GCATGATTATTGGTCGGCGC 60.386 55.000 0.00 0.00 0.00 6.53
5016 5435 0.943673 CATGATTATTGGTCGGCGCA 59.056 50.000 10.83 0.00 0.00 6.09
5017 5436 0.944386 ATGATTATTGGTCGGCGCAC 59.056 50.000 10.83 0.00 0.00 5.34
5018 5437 0.107897 TGATTATTGGTCGGCGCACT 60.108 50.000 10.83 0.00 0.00 4.40
5019 5438 0.304705 GATTATTGGTCGGCGCACTG 59.695 55.000 10.83 0.00 0.00 3.66
5020 5439 0.392461 ATTATTGGTCGGCGCACTGT 60.392 50.000 10.83 0.00 0.00 3.55
5021 5440 0.246910 TTATTGGTCGGCGCACTGTA 59.753 50.000 10.83 0.00 0.00 2.74
5022 5441 0.246910 TATTGGTCGGCGCACTGTAA 59.753 50.000 10.83 0.00 0.00 2.41
5023 5442 0.392461 ATTGGTCGGCGCACTGTAAT 60.392 50.000 10.83 0.80 0.00 1.89
5024 5443 1.017177 TTGGTCGGCGCACTGTAATC 61.017 55.000 10.83 0.00 0.00 1.75
5025 5444 1.153628 GGTCGGCGCACTGTAATCT 60.154 57.895 10.83 0.00 0.00 2.40
5026 5445 0.101759 GGTCGGCGCACTGTAATCTA 59.898 55.000 10.83 0.00 0.00 1.98
5027 5446 1.478137 GTCGGCGCACTGTAATCTAG 58.522 55.000 10.83 0.00 0.00 2.43
5028 5447 1.065102 GTCGGCGCACTGTAATCTAGA 59.935 52.381 10.83 0.00 0.00 2.43
5029 5448 1.954382 TCGGCGCACTGTAATCTAGAT 59.046 47.619 10.83 0.00 0.00 1.98
5030 5449 3.058432 GTCGGCGCACTGTAATCTAGATA 60.058 47.826 10.83 0.00 0.00 1.98
5031 5450 3.756963 TCGGCGCACTGTAATCTAGATAT 59.243 43.478 10.83 0.00 0.00 1.63
5032 5451 4.099120 CGGCGCACTGTAATCTAGATATC 58.901 47.826 10.83 3.07 0.00 1.63
5033 5452 4.099120 GGCGCACTGTAATCTAGATATCG 58.901 47.826 10.83 3.73 0.00 2.92
5034 5453 4.142665 GGCGCACTGTAATCTAGATATCGA 60.143 45.833 10.83 0.00 0.00 3.59
5035 5454 4.789119 GCGCACTGTAATCTAGATATCGAC 59.211 45.833 5.46 3.18 0.00 4.20
5036 5455 5.617087 GCGCACTGTAATCTAGATATCGACA 60.617 44.000 5.46 7.45 0.00 4.35
5037 5456 6.547283 CGCACTGTAATCTAGATATCGACAT 58.453 40.000 5.46 0.00 0.00 3.06
5038 5457 6.684979 CGCACTGTAATCTAGATATCGACATC 59.315 42.308 5.46 0.00 0.00 3.06
5039 5458 7.413548 CGCACTGTAATCTAGATATCGACATCT 60.414 40.741 11.59 11.59 38.76 2.90
5040 5459 8.240682 GCACTGTAATCTAGATATCGACATCTT 58.759 37.037 12.17 0.00 36.63 2.40
5047 5466 9.733556 AATCTAGATATCGACATCTTAGACTGT 57.266 33.333 12.17 0.84 36.63 3.55
5048 5467 8.766000 TCTAGATATCGACATCTTAGACTGTC 57.234 38.462 12.17 0.00 36.63 3.51
5049 5468 8.590204 TCTAGATATCGACATCTTAGACTGTCT 58.410 37.037 12.17 15.57 39.67 3.41
5050 5469 9.863845 CTAGATATCGACATCTTAGACTGTCTA 57.136 37.037 12.17 13.34 39.67 2.59
5060 5479 1.930251 AGACTGTCTAAGAGCAGCCA 58.070 50.000 8.91 0.00 36.26 4.75
5075 5494 4.171234 AGCAGCCATAGTAAGGGATATGT 58.829 43.478 0.00 0.00 0.00 2.29
5078 5497 3.264450 AGCCATAGTAAGGGATATGTGCC 59.736 47.826 0.00 0.00 35.78 5.01
5079 5498 3.009033 GCCATAGTAAGGGATATGTGCCA 59.991 47.826 2.18 0.00 38.52 4.92
5080 5499 4.324563 GCCATAGTAAGGGATATGTGCCAT 60.325 45.833 2.18 0.00 38.52 4.40
5081 5500 5.188434 CCATAGTAAGGGATATGTGCCATG 58.812 45.833 2.18 0.00 38.52 3.66
5087 5506 4.564782 AGGGATATGTGCCATGATAGTG 57.435 45.455 2.18 0.00 38.52 2.74
5088 5507 3.912528 AGGGATATGTGCCATGATAGTGT 59.087 43.478 2.18 0.00 38.52 3.55
5101 5520 5.237127 CCATGATAGTGTGCGTCATTGTTAT 59.763 40.000 0.00 0.00 30.57 1.89
5105 5524 0.808125 TGTGCGTCATTGTTATGCCC 59.192 50.000 0.00 0.00 0.00 5.36
5109 5528 1.355210 GTCATTGTTATGCCCGGCG 59.645 57.895 4.58 0.00 0.00 6.46
5130 5550 2.095059 GTGCTCCATAAAGGTTGCAGTG 60.095 50.000 0.00 0.00 44.01 3.66
5136 5556 1.781786 TAAAGGTTGCAGTGGCCAAA 58.218 45.000 7.24 0.00 40.13 3.28
5174 5594 8.910351 ACTATTGACAGGATCTTTATAAAGGC 57.090 34.615 22.11 15.12 36.67 4.35
5178 5598 7.432148 TGACAGGATCTTTATAAAGGCACTA 57.568 36.000 22.11 5.81 38.49 2.74
5181 5601 8.548880 ACAGGATCTTTATAAAGGCACTACTA 57.451 34.615 22.11 3.82 38.49 1.82
5182 5602 8.422566 ACAGGATCTTTATAAAGGCACTACTAC 58.577 37.037 22.11 5.93 38.49 2.73
5206 5629 3.450578 CTGCTGCTGTTGTTTGAATTGT 58.549 40.909 0.00 0.00 0.00 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.770388 GCCTTACTTCTCTAACCAGGACT 59.230 47.826 0.00 0.00 0.00 3.85
55 56 8.125978 TGATCCTAAAACGGTTAGAGAAGTAA 57.874 34.615 9.12 0.00 0.00 2.24
56 57 7.630082 GCTGATCCTAAAACGGTTAGAGAAGTA 60.630 40.741 9.12 0.00 0.00 2.24
70 71 5.011533 GGAGCATCTCTAGCTGATCCTAAAA 59.988 44.000 10.14 0.00 41.84 1.52
74 75 2.158340 TGGAGCATCTCTAGCTGATCCT 60.158 50.000 16.49 7.03 44.42 3.24
219 223 4.680237 CCCGAGTGCACCAGCGAA 62.680 66.667 21.27 0.00 46.23 4.70
226 230 2.775032 TAAAGACGGCCCGAGTGCAC 62.775 60.000 11.71 9.40 0.00 4.57
227 231 2.501223 CTAAAGACGGCCCGAGTGCA 62.501 60.000 11.71 0.00 0.00 4.57
228 232 1.810030 CTAAAGACGGCCCGAGTGC 60.810 63.158 11.71 0.00 0.00 4.40
229 233 0.037605 AACTAAAGACGGCCCGAGTG 60.038 55.000 11.71 0.00 0.00 3.51
230 234 0.683412 AAACTAAAGACGGCCCGAGT 59.317 50.000 11.71 0.00 0.00 4.18
250 254 4.827692 ACAAAGAACACGCATACCAGATA 58.172 39.130 0.00 0.00 0.00 1.98
254 258 2.805671 CTGACAAAGAACACGCATACCA 59.194 45.455 0.00 0.00 0.00 3.25
257 261 2.729360 CGACTGACAAAGAACACGCATA 59.271 45.455 0.00 0.00 0.00 3.14
263 267 4.250464 AGAACAACGACTGACAAAGAACA 58.750 39.130 0.00 0.00 0.00 3.18
327 331 2.568029 CGAATGCAACGTCGCACG 60.568 61.111 1.76 0.00 46.56 5.34
388 392 4.194720 GCGAGCGGTCGGTGAGAT 62.195 66.667 34.69 0.00 46.91 2.75
431 435 3.451141 AATTGGCTTGCTCGTTCAAAA 57.549 38.095 0.00 0.00 0.00 2.44
507 519 1.226888 CTAGTGTTAGCCGCGTCCC 60.227 63.158 4.92 0.00 0.00 4.46
540 552 1.210722 TGGCCGCTATTGTGAACCATA 59.789 47.619 0.00 0.00 0.00 2.74
562 579 2.099263 GCTATGAGTAACAGCGTCCAGA 59.901 50.000 0.00 0.00 0.00 3.86
591 608 9.898152 AAGGTAACCTGAAATTTTGAAAAATGA 57.102 25.926 1.91 0.00 34.75 2.57
609 627 6.659745 ATTCCAAAACTGGTAAAGGTAACC 57.340 37.500 0.00 0.00 37.53 2.85
708 726 3.426568 GTTGGCTCTGGCTCGTGC 61.427 66.667 0.00 0.00 38.73 5.34
795 813 2.107953 GAGACGAGCAGGGATGGC 59.892 66.667 0.00 0.00 0.00 4.40
858 876 3.910568 AGAAGATTTGAGAGCTCAGGG 57.089 47.619 17.77 0.00 41.13 4.45
859 877 4.080975 AGGAAGAAGATTTGAGAGCTCAGG 60.081 45.833 17.77 0.00 41.13 3.86
860 878 5.088680 AGGAAGAAGATTTGAGAGCTCAG 57.911 43.478 17.77 0.00 41.13 3.35
861 879 5.243981 CAAGGAAGAAGATTTGAGAGCTCA 58.756 41.667 17.77 0.00 37.91 4.26
862 880 4.635324 CCAAGGAAGAAGATTTGAGAGCTC 59.365 45.833 5.27 5.27 0.00 4.09
863 881 4.567327 CCCAAGGAAGAAGATTTGAGAGCT 60.567 45.833 0.00 0.00 0.00 4.09
864 882 3.693578 CCCAAGGAAGAAGATTTGAGAGC 59.306 47.826 0.00 0.00 0.00 4.09
865 883 3.693578 GCCCAAGGAAGAAGATTTGAGAG 59.306 47.826 0.00 0.00 0.00 3.20
866 884 3.690460 GCCCAAGGAAGAAGATTTGAGA 58.310 45.455 0.00 0.00 0.00 3.27
867 885 2.421424 CGCCCAAGGAAGAAGATTTGAG 59.579 50.000 0.00 0.00 0.00 3.02
880 898 1.675552 AAATATTCGACCGCCCAAGG 58.324 50.000 0.00 0.00 37.30 3.61
902 920 3.062466 CGACGACAGCTGAGGGGA 61.062 66.667 23.35 0.00 0.00 4.81
903 921 3.062466 TCGACGACAGCTGAGGGG 61.062 66.667 23.35 8.56 0.00 4.79
908 926 0.318699 TTTGGAGTCGACGACAGCTG 60.319 55.000 28.31 13.48 34.60 4.24
909 927 0.318784 GTTTGGAGTCGACGACAGCT 60.319 55.000 28.31 9.37 34.60 4.24
910 928 0.318784 AGTTTGGAGTCGACGACAGC 60.319 55.000 28.31 19.16 34.60 4.40
911 929 1.666311 GGAGTTTGGAGTCGACGACAG 60.666 57.143 28.31 0.00 34.60 3.51
912 930 0.313043 GGAGTTTGGAGTCGACGACA 59.687 55.000 28.31 10.49 34.60 4.35
913 931 0.388263 GGGAGTTTGGAGTCGACGAC 60.388 60.000 20.25 20.25 0.00 4.34
914 932 1.530013 GGGGAGTTTGGAGTCGACGA 61.530 60.000 10.46 0.00 0.00 4.20
915 933 1.080025 GGGGAGTTTGGAGTCGACG 60.080 63.158 10.46 0.00 0.00 5.12
916 934 1.080025 CGGGGAGTTTGGAGTCGAC 60.080 63.158 7.70 7.70 0.00 4.20
949 973 0.605589 GGTCAAGGGGAAACGACTGG 60.606 60.000 0.00 0.00 0.00 4.00
955 979 0.178961 AAGGCAGGTCAAGGGGAAAC 60.179 55.000 0.00 0.00 0.00 2.78
967 991 1.686800 CCAATCCCCCAAAGGCAGG 60.687 63.158 0.00 0.00 0.00 4.85
1101 1127 3.554342 CCCTCCATCTCCAGCCCG 61.554 72.222 0.00 0.00 0.00 6.13
1104 1130 2.750657 CCCACCCTCCATCTCCAGC 61.751 68.421 0.00 0.00 0.00 4.85
1177 1203 2.697431 CGAGAGCTGGAGTACATAGC 57.303 55.000 0.00 7.65 37.71 2.97
1230 1257 4.584874 TGAACACAAGAACTGAAAGACCA 58.415 39.130 0.00 0.00 37.43 4.02
1278 1305 6.505272 ACACAGAAACTAACTGTCTACTGTC 58.495 40.000 0.00 0.00 45.15 3.51
1279 1306 6.096423 TGACACAGAAACTAACTGTCTACTGT 59.904 38.462 0.00 0.00 45.15 3.55
1280 1307 6.418226 GTGACACAGAAACTAACTGTCTACTG 59.582 42.308 0.00 0.00 45.15 2.74
1281 1308 6.096423 TGTGACACAGAAACTAACTGTCTACT 59.904 38.462 3.56 0.00 45.15 2.57
1282 1309 6.270815 TGTGACACAGAAACTAACTGTCTAC 58.729 40.000 3.56 0.00 45.15 2.59
1283 1310 6.459670 TGTGACACAGAAACTAACTGTCTA 57.540 37.500 3.56 0.00 45.15 2.59
1284 1311 5.339008 TGTGACACAGAAACTAACTGTCT 57.661 39.130 3.56 0.00 45.15 3.41
1289 1316 7.948278 ACTAAGATGTGACACAGAAACTAAC 57.052 36.000 14.66 0.00 0.00 2.34
1303 1330 8.226819 TCTCCACAGTAAGATACTAAGATGTG 57.773 38.462 0.00 0.00 37.23 3.21
1305 1332 9.743057 CTTTCTCCACAGTAAGATACTAAGATG 57.257 37.037 0.00 0.00 37.23 2.90
1306 1333 9.482175 ACTTTCTCCACAGTAAGATACTAAGAT 57.518 33.333 0.00 0.00 37.23 2.40
1307 1334 8.880991 ACTTTCTCCACAGTAAGATACTAAGA 57.119 34.615 0.00 0.00 37.23 2.10
1309 1336 8.684520 GCTACTTTCTCCACAGTAAGATACTAA 58.315 37.037 0.00 0.00 37.23 2.24
1311 1338 6.663953 TGCTACTTTCTCCACAGTAAGATACT 59.336 38.462 0.00 0.00 40.28 2.12
1312 1339 6.864342 TGCTACTTTCTCCACAGTAAGATAC 58.136 40.000 0.00 0.00 32.64 2.24
1313 1340 7.363880 CCTTGCTACTTTCTCCACAGTAAGATA 60.364 40.741 0.00 0.00 32.65 1.98
1320 1347 3.070018 CACCTTGCTACTTTCTCCACAG 58.930 50.000 0.00 0.00 0.00 3.66
1337 1364 7.122055 TCAACTGATTCAAGTTAAACAACACCT 59.878 33.333 0.00 0.00 38.34 4.00
1412 1452 7.134362 ACTGATATATCCCATCCTATGCTTG 57.866 40.000 10.25 0.00 0.00 4.01
1447 1515 7.176165 ACCGATATGTCCGACATCTATTTTCTA 59.824 37.037 17.38 0.00 39.88 2.10
1449 1517 6.157211 ACCGATATGTCCGACATCTATTTTC 58.843 40.000 17.38 6.03 39.88 2.29
1451 1519 5.243060 TGACCGATATGTCCGACATCTATTT 59.757 40.000 17.38 1.35 39.88 1.40
1453 1521 4.332828 TGACCGATATGTCCGACATCTAT 58.667 43.478 17.38 6.88 39.88 1.98
1454 1522 3.746940 TGACCGATATGTCCGACATCTA 58.253 45.455 17.38 1.80 39.88 1.98
1568 1712 9.716531 CACACACCATTATATCTATCAATCAGT 57.283 33.333 0.00 0.00 0.00 3.41
1626 1857 3.750371 CATCGGGTGCCCATCTTTATTA 58.250 45.455 8.14 0.00 35.37 0.98
1627 1858 2.586425 CATCGGGTGCCCATCTTTATT 58.414 47.619 8.14 0.00 35.37 1.40
1628 1859 2.276732 CATCGGGTGCCCATCTTTAT 57.723 50.000 8.14 0.00 35.37 1.40
1629 1860 3.798794 CATCGGGTGCCCATCTTTA 57.201 52.632 8.14 0.00 35.37 1.85
1630 1861 4.664062 CATCGGGTGCCCATCTTT 57.336 55.556 8.14 0.00 35.37 2.52
1665 1896 8.814038 ATCAGCTGTCTTTACCATTAAATCTT 57.186 30.769 14.67 0.00 0.00 2.40
1714 1945 1.467342 GTTCTTATGGTGTTCACCGGC 59.533 52.381 15.82 0.00 0.00 6.13
1717 1948 7.390718 AGTCAAATAGTTCTTATGGTGTTCACC 59.609 37.037 14.31 14.31 0.00 4.02
1729 1960 8.903820 ACAAAAGTAAGCAGTCAAATAGTTCTT 58.096 29.630 0.00 0.00 0.00 2.52
1734 1965 6.672147 AGCACAAAAGTAAGCAGTCAAATAG 58.328 36.000 0.00 0.00 0.00 1.73
1741 1972 7.745620 ATTTAGTAGCACAAAAGTAAGCAGT 57.254 32.000 0.00 0.00 0.00 4.40
1992 2226 4.773674 TCCTGCAAAATGGAGAATGAACAT 59.226 37.500 0.03 0.00 38.14 2.71
2001 2235 4.453136 CCAAACAATTCCTGCAAAATGGAG 59.547 41.667 3.46 0.00 35.43 3.86
2010 2244 4.319694 GCAATGAAACCAAACAATTCCTGC 60.320 41.667 0.00 0.00 0.00 4.85
2088 2322 1.263356 CTAGTTCCCGTGTCTTCCCA 58.737 55.000 0.00 0.00 0.00 4.37
2218 2452 5.054477 ACGATGTACAAATATGCTGGGTAC 58.946 41.667 0.00 0.00 35.93 3.34
2384 2628 4.694339 AGATTAATTCGAAGGAAGACCCG 58.306 43.478 3.35 0.00 40.87 5.28
2387 2631 8.710835 AGAAAGAGATTAATTCGAAGGAAGAC 57.289 34.615 3.35 0.00 35.19 3.01
2551 2795 7.602517 AGAACGAGAAATTTCTTATGAGGTG 57.397 36.000 21.33 7.39 37.73 4.00
2565 2809 6.475727 CGGCAATAATCTCTTAGAACGAGAAA 59.524 38.462 0.00 0.00 40.58 2.52
2571 2815 9.477484 TCTATTTCGGCAATAATCTCTTAGAAC 57.523 33.333 0.00 0.00 0.00 3.01
2589 2833 6.129393 CCAACAGCGTCATTAATCTATTTCG 58.871 40.000 0.00 0.00 0.00 3.46
2638 2882 1.469767 CCTGCGACGACATCTTCATCA 60.470 52.381 0.00 0.00 0.00 3.07
2739 2983 2.863809 ACCTCACCATTTGTCCTGAAC 58.136 47.619 0.00 0.00 0.00 3.18
2747 2991 5.782893 TGACCTTTAAACCTCACCATTTG 57.217 39.130 0.00 0.00 0.00 2.32
2770 3014 6.059484 CCACTAGGTTTGAAGTGAAAGGTTA 58.941 40.000 4.11 0.00 44.79 2.85
2828 3072 8.751335 CGCACAAATAACTTAGAAACAACAAAT 58.249 29.630 0.00 0.00 0.00 2.32
2865 3109 9.396022 CCATTCCATATTAATGACCTGGTATAC 57.604 37.037 0.00 0.00 36.61 1.47
2909 3153 8.927411 TGATCATATTCAGTTACTGGAAGATGA 58.073 33.333 23.10 23.10 35.74 2.92
2930 3174 8.687292 AGCTTTCATTATCTAATGCTTGATCA 57.313 30.769 5.27 0.00 42.06 2.92
3098 3342 3.988379 TGCAAGGACAGTTTAAGCAAG 57.012 42.857 0.00 0.00 0.00 4.01
3131 3375 3.364964 GCTTAGTGTGGTCAATTTCACCG 60.365 47.826 0.00 0.00 36.61 4.94
3181 3425 1.133637 TGCACAAGGCTAGGGAAACAA 60.134 47.619 0.00 0.00 45.15 2.83
3197 3441 4.673441 ACACATTAGAGTATCGACTGCAC 58.327 43.478 0.00 0.00 42.67 4.57
3198 3442 4.983671 ACACATTAGAGTATCGACTGCA 57.016 40.909 0.00 0.00 42.67 4.41
3201 3445 8.905660 ACTACATACACATTAGAGTATCGACT 57.094 34.615 0.00 0.00 42.67 4.18
3237 3481 6.817765 TTCCAGGTCATCAACAAGATAAAC 57.182 37.500 0.00 0.00 34.43 2.01
3267 3511 6.681777 ACAGAGGTATGCATTTGAAAGAAAC 58.318 36.000 3.54 0.00 0.00 2.78
3287 3531 7.665559 AGATTAAGAACACCAAGCATTAACAGA 59.334 33.333 0.00 0.00 0.00 3.41
3511 3755 9.345517 CAAAACTGTGACACTTATTATGGATTG 57.654 33.333 7.20 0.00 0.00 2.67
3512 3756 9.295825 TCAAAACTGTGACACTTATTATGGATT 57.704 29.630 7.20 0.00 0.00 3.01
3544 3788 1.868498 TGTCGCGGTTTTGAACTAAGG 59.132 47.619 6.13 0.00 0.00 2.69
3545 3789 2.542595 AGTGTCGCGGTTTTGAACTAAG 59.457 45.455 6.13 0.00 0.00 2.18
3557 3801 2.675844 TGATCCAAAATAAGTGTCGCGG 59.324 45.455 6.13 0.00 0.00 6.46
3558 3802 3.616821 TCTGATCCAAAATAAGTGTCGCG 59.383 43.478 0.00 0.00 0.00 5.87
3586 3830 3.181467 TGCCAAGTTTGAATTTGGGAGTG 60.181 43.478 16.60 0.00 43.63 3.51
3631 3875 1.800315 CGGAGTCCTGCGTACAACG 60.800 63.158 7.77 0.00 45.88 4.10
3679 3923 0.460987 CCACTGTCTTCAGATCGGGC 60.461 60.000 2.17 0.00 43.76 6.13
3693 3937 5.835113 TTCCTTCAGTTTTTCTTCCACTG 57.165 39.130 0.00 0.00 39.51 3.66
3712 3956 4.591072 AGTCAGCATACCTCTAGGATTTCC 59.409 45.833 2.23 0.00 38.94 3.13
3768 4012 8.480066 CAATGTGTGCATAGAACTAGTATAACG 58.520 37.037 0.00 0.00 34.39 3.18
3781 4025 6.293790 CCATATCACCTTCAATGTGTGCATAG 60.294 42.308 0.00 0.00 34.39 2.23
3797 4041 3.206150 CACACAGCCTTACCATATCACC 58.794 50.000 0.00 0.00 0.00 4.02
3802 4046 2.741553 CGATGCACACAGCCTTACCATA 60.742 50.000 0.00 0.00 44.83 2.74
3823 4067 2.178890 CCTCGCCTCTGCATCAAGC 61.179 63.158 0.00 0.00 45.96 4.01
3842 4086 8.922931 AATTATTTTCAAAAAGAGGGCAACAT 57.077 26.923 0.00 0.00 39.74 2.71
3866 4110 7.936496 TGCATACCATCTCACTTCAATTTAA 57.064 32.000 0.00 0.00 0.00 1.52
3942 4186 3.599343 TCTTGCTACAATGTCGCAGATT 58.401 40.909 12.24 0.00 40.67 2.40
4020 4264 1.519455 CTTGTCGACGGAGCCATCC 60.519 63.158 11.62 0.00 42.81 3.51
4108 4352 5.364157 CCCCTAGCAGTTCATTTAGAGTAGT 59.636 44.000 0.00 0.00 0.00 2.73
4122 4366 0.639392 ATGACTCCTCCCCTAGCAGT 59.361 55.000 0.00 0.00 0.00 4.40
4150 4394 0.459899 TCCGCATGCTTGACGACTAT 59.540 50.000 17.13 0.00 0.00 2.12
4164 4408 4.240103 CCCGAGCCATCATCCGCA 62.240 66.667 0.00 0.00 0.00 5.69
4218 4462 8.893727 GCCTACTGTTATTCAACATTTCTGTAT 58.106 33.333 0.00 0.00 43.58 2.29
4236 4480 1.339151 GCAACCTAGCTTGCCTACTGT 60.339 52.381 11.10 0.00 40.68 3.55
4251 4495 3.584834 GGACATAAAATGTGTGGCAACC 58.415 45.455 0.00 0.00 45.03 3.77
4289 4533 2.479275 GAGAATTAGGCGCCGTTTATCC 59.521 50.000 23.20 8.46 0.00 2.59
4300 4544 3.561725 GTGTACATGCTGGAGAATTAGGC 59.438 47.826 0.00 0.00 0.00 3.93
4321 4565 6.195600 TCCAACATGGGTAAACTCTTAAGT 57.804 37.500 1.63 0.00 38.32 2.24
4322 4566 6.715264 AGTTCCAACATGGGTAAACTCTTAAG 59.285 38.462 0.00 0.00 38.32 1.85
4323 4567 6.488683 CAGTTCCAACATGGGTAAACTCTTAA 59.511 38.462 0.00 0.00 38.32 1.85
4324 4568 6.001460 CAGTTCCAACATGGGTAAACTCTTA 58.999 40.000 0.00 0.00 38.32 2.10
4325 4569 4.827284 CAGTTCCAACATGGGTAAACTCTT 59.173 41.667 0.00 0.00 38.32 2.85
4326 4570 4.141251 ACAGTTCCAACATGGGTAAACTCT 60.141 41.667 0.00 0.00 38.32 3.24
4327 4571 4.142038 ACAGTTCCAACATGGGTAAACTC 58.858 43.478 0.00 0.00 38.32 3.01
4337 4581 2.041216 GGACCCCTTACAGTTCCAACAT 59.959 50.000 0.00 0.00 0.00 2.71
4340 4584 1.822425 TGGACCCCTTACAGTTCCAA 58.178 50.000 0.00 0.00 0.00 3.53
4364 4609 4.054671 GACCTCATCTAAGCCTCATTTCG 58.945 47.826 0.00 0.00 0.00 3.46
4365 4610 4.813697 GTGACCTCATCTAAGCCTCATTTC 59.186 45.833 0.00 0.00 0.00 2.17
4368 4613 2.703007 GGTGACCTCATCTAAGCCTCAT 59.297 50.000 0.00 0.00 0.00 2.90
4369 4614 2.111384 GGTGACCTCATCTAAGCCTCA 58.889 52.381 0.00 0.00 0.00 3.86
4370 4615 2.393646 AGGTGACCTCATCTAAGCCTC 58.606 52.381 0.00 0.00 35.13 4.70
4371 4616 2.503356 CAAGGTGACCTCATCTAAGCCT 59.497 50.000 3.76 0.00 36.03 4.58
4373 4618 3.618690 ACAAGGTGACCTCATCTAAGC 57.381 47.619 3.76 0.00 36.03 3.09
4374 4619 5.186021 ACTGTACAAGGTGACCTCATCTAAG 59.814 44.000 3.76 1.61 36.03 2.18
4375 4620 5.084519 ACTGTACAAGGTGACCTCATCTAA 58.915 41.667 3.76 0.00 36.03 2.10
4393 4638 9.292195 CTCAGGTTCCCTTTTATTTTAACTGTA 57.708 33.333 0.00 0.00 0.00 2.74
4421 4666 7.934855 AAAAGATAGTTGCAGATTCATGAGT 57.065 32.000 0.00 0.00 0.00 3.41
4460 4705 9.662545 CGGAAAGACGGTACTTTTAATTAAAAA 57.337 29.630 20.75 7.67 39.71 1.94
4468 4713 3.573967 AGGACGGAAAGACGGTACTTTTA 59.426 43.478 0.00 0.00 39.48 1.52
4469 4714 2.366590 AGGACGGAAAGACGGTACTTTT 59.633 45.455 0.00 0.00 39.48 2.27
4512 4757 6.829298 TGACCTGAATTTTGTACTACCAAACA 59.171 34.615 0.00 0.00 34.23 2.83
4513 4758 7.266922 TGACCTGAATTTTGTACTACCAAAC 57.733 36.000 0.00 0.00 34.23 2.93
4514 4759 7.883391 TTGACCTGAATTTTGTACTACCAAA 57.117 32.000 0.00 0.00 32.70 3.28
4517 4762 8.027189 GGAATTTGACCTGAATTTTGTACTACC 58.973 37.037 0.00 0.00 0.00 3.18
4579 4863 5.977129 CAGTGTTCACAAATTAACCTTGTCC 59.023 40.000 5.74 0.00 34.80 4.02
4580 4864 5.977129 CCAGTGTTCACAAATTAACCTTGTC 59.023 40.000 5.74 0.00 34.80 3.18
4601 4885 7.380602 CAGTTTGATGAGCTTTTTAACTTCCAG 59.619 37.037 0.00 0.00 0.00 3.86
4636 4920 6.829811 ACAACTTTTGGCCTTTTAGTAGTACA 59.170 34.615 3.32 0.00 34.12 2.90
4637 4921 7.136772 CACAACTTTTGGCCTTTTAGTAGTAC 58.863 38.462 3.32 0.00 34.12 2.73
4638 4922 6.263617 CCACAACTTTTGGCCTTTTAGTAGTA 59.736 38.462 3.32 0.00 34.12 1.82
4639 4923 5.068591 CCACAACTTTTGGCCTTTTAGTAGT 59.931 40.000 3.32 0.00 34.12 2.73
4640 4924 5.068591 ACCACAACTTTTGGCCTTTTAGTAG 59.931 40.000 3.32 0.00 37.69 2.57
4820 5105 3.725010 CGTTACGTCGGTTACAGAGGTAC 60.725 52.174 15.21 10.69 38.28 3.34
4838 5123 6.239396 TGGATGGTTTGATTTAGAACCGTTA 58.761 36.000 1.91 0.00 46.55 3.18
4841 5126 5.125417 ACATGGATGGTTTGATTTAGAACCG 59.875 40.000 0.00 0.00 46.55 4.44
4846 5131 6.624352 ATCGACATGGATGGTTTGATTTAG 57.376 37.500 0.00 0.00 0.00 1.85
4864 5283 1.173043 TTGGGCCATGAACAATCGAC 58.827 50.000 7.26 0.00 0.00 4.20
4887 5306 8.145316 TGTTGTAGTTTTGTACAAGTATCACC 57.855 34.615 8.56 0.57 42.27 4.02
4900 5319 8.455682 TCCAGTTTAGAAGTTGTTGTAGTTTTG 58.544 33.333 0.00 0.00 0.00 2.44
4902 5321 8.747538 ATCCAGTTTAGAAGTTGTTGTAGTTT 57.252 30.769 0.00 0.00 0.00 2.66
4905 5324 9.653287 TGATATCCAGTTTAGAAGTTGTTGTAG 57.347 33.333 0.00 0.00 0.00 2.74
4907 5326 8.918202 TTGATATCCAGTTTAGAAGTTGTTGT 57.082 30.769 0.00 0.00 0.00 3.32
4910 5329 9.614792 GGTATTGATATCCAGTTTAGAAGTTGT 57.385 33.333 0.00 0.00 0.00 3.32
4911 5330 9.613428 TGGTATTGATATCCAGTTTAGAAGTTG 57.387 33.333 0.00 0.00 0.00 3.16
4912 5331 9.614792 GTGGTATTGATATCCAGTTTAGAAGTT 57.385 33.333 0.00 0.00 31.54 2.66
4914 5333 7.661847 GGGTGGTATTGATATCCAGTTTAGAAG 59.338 40.741 0.00 0.00 31.54 2.85
4915 5334 7.128109 TGGGTGGTATTGATATCCAGTTTAGAA 59.872 37.037 0.00 0.00 31.54 2.10
4916 5335 6.617784 TGGGTGGTATTGATATCCAGTTTAGA 59.382 38.462 0.00 0.00 31.54 2.10
4918 5337 6.833346 TGGGTGGTATTGATATCCAGTTTA 57.167 37.500 0.00 0.00 31.54 2.01
4919 5338 5.725551 TGGGTGGTATTGATATCCAGTTT 57.274 39.130 0.00 0.00 31.54 2.66
4920 5339 5.930209 ATGGGTGGTATTGATATCCAGTT 57.070 39.130 0.00 0.00 31.54 3.16
4921 5340 5.612688 AGAATGGGTGGTATTGATATCCAGT 59.387 40.000 0.00 0.00 31.54 4.00
4922 5341 6.131972 AGAATGGGTGGTATTGATATCCAG 57.868 41.667 0.00 0.00 31.54 3.86
4924 5343 7.056635 CCATAGAATGGGTGGTATTGATATCC 58.943 42.308 0.00 0.00 46.86 2.59
4960 5379 2.356135 GCCGTAGCCATCTCAAAAGAA 58.644 47.619 0.00 0.00 34.49 2.52
4961 5380 1.739035 CGCCGTAGCCATCTCAAAAGA 60.739 52.381 0.00 0.00 34.57 2.52
4962 5381 0.652592 CGCCGTAGCCATCTCAAAAG 59.347 55.000 0.00 0.00 34.57 2.27
4963 5382 0.248012 TCGCCGTAGCCATCTCAAAA 59.752 50.000 0.00 0.00 34.57 2.44
4964 5383 0.459585 GTCGCCGTAGCCATCTCAAA 60.460 55.000 0.00 0.00 34.57 2.69
4965 5384 1.141019 GTCGCCGTAGCCATCTCAA 59.859 57.895 0.00 0.00 34.57 3.02
4966 5385 1.320344 AAGTCGCCGTAGCCATCTCA 61.320 55.000 0.00 0.00 34.57 3.27
4967 5386 0.872021 CAAGTCGCCGTAGCCATCTC 60.872 60.000 0.00 0.00 34.57 2.75
4968 5387 1.141881 CAAGTCGCCGTAGCCATCT 59.858 57.895 0.00 0.00 34.57 2.90
4970 5389 1.686325 ATCCAAGTCGCCGTAGCCAT 61.686 55.000 0.00 0.00 34.57 4.40
4971 5390 2.355986 ATCCAAGTCGCCGTAGCCA 61.356 57.895 0.00 0.00 34.57 4.75
4972 5391 1.883084 CATCCAAGTCGCCGTAGCC 60.883 63.158 0.00 0.00 34.57 3.93
4974 5393 0.742505 TACCATCCAAGTCGCCGTAG 59.257 55.000 0.00 0.00 0.00 3.51
4975 5394 0.457035 GTACCATCCAAGTCGCCGTA 59.543 55.000 0.00 0.00 0.00 4.02
4977 5396 0.806102 CAGTACCATCCAAGTCGCCG 60.806 60.000 0.00 0.00 0.00 6.46
4979 5398 0.391130 TGCAGTACCATCCAAGTCGC 60.391 55.000 0.00 0.00 0.00 5.19
4980 5399 1.935873 CATGCAGTACCATCCAAGTCG 59.064 52.381 0.00 0.00 0.00 4.18
4981 5400 3.266510 TCATGCAGTACCATCCAAGTC 57.733 47.619 0.00 0.00 0.00 3.01
4982 5401 3.939740 ATCATGCAGTACCATCCAAGT 57.060 42.857 0.00 0.00 0.00 3.16
4983 5402 6.294342 CCAATAATCATGCAGTACCATCCAAG 60.294 42.308 0.00 0.00 0.00 3.61
4984 5403 5.535783 CCAATAATCATGCAGTACCATCCAA 59.464 40.000 0.00 0.00 0.00 3.53
4986 5405 5.072741 ACCAATAATCATGCAGTACCATCC 58.927 41.667 0.00 0.00 0.00 3.51
4987 5406 5.106948 CGACCAATAATCATGCAGTACCATC 60.107 44.000 0.00 0.00 0.00 3.51
4988 5407 4.756642 CGACCAATAATCATGCAGTACCAT 59.243 41.667 0.00 0.00 0.00 3.55
4989 5408 4.126437 CGACCAATAATCATGCAGTACCA 58.874 43.478 0.00 0.00 0.00 3.25
4990 5409 3.498397 CCGACCAATAATCATGCAGTACC 59.502 47.826 0.00 0.00 0.00 3.34
4991 5410 3.058914 GCCGACCAATAATCATGCAGTAC 60.059 47.826 0.00 0.00 0.00 2.73
4992 5411 3.138304 GCCGACCAATAATCATGCAGTA 58.862 45.455 0.00 0.00 0.00 2.74
4993 5412 1.949525 GCCGACCAATAATCATGCAGT 59.050 47.619 0.00 0.00 0.00 4.40
4994 5413 1.069703 CGCCGACCAATAATCATGCAG 60.070 52.381 0.00 0.00 0.00 4.41
4995 5414 0.943673 CGCCGACCAATAATCATGCA 59.056 50.000 0.00 0.00 0.00 3.96
4996 5415 0.385974 GCGCCGACCAATAATCATGC 60.386 55.000 0.00 0.00 0.00 4.06
4997 5416 0.943673 TGCGCCGACCAATAATCATG 59.056 50.000 4.18 0.00 0.00 3.07
4998 5417 0.944386 GTGCGCCGACCAATAATCAT 59.056 50.000 4.18 0.00 0.00 2.45
4999 5418 0.107897 AGTGCGCCGACCAATAATCA 60.108 50.000 4.18 0.00 0.00 2.57
5000 5419 0.304705 CAGTGCGCCGACCAATAATC 59.695 55.000 4.18 0.00 0.00 1.75
5001 5420 0.392461 ACAGTGCGCCGACCAATAAT 60.392 50.000 4.18 0.00 0.00 1.28
5002 5421 0.246910 TACAGTGCGCCGACCAATAA 59.753 50.000 4.18 0.00 0.00 1.40
5003 5422 0.246910 TTACAGTGCGCCGACCAATA 59.753 50.000 4.18 0.00 0.00 1.90
5004 5423 0.392461 ATTACAGTGCGCCGACCAAT 60.392 50.000 4.18 0.00 0.00 3.16
5005 5424 1.004320 ATTACAGTGCGCCGACCAA 60.004 52.632 4.18 0.00 0.00 3.67
5006 5425 1.447140 GATTACAGTGCGCCGACCA 60.447 57.895 4.18 0.00 0.00 4.02
5007 5426 0.101759 TAGATTACAGTGCGCCGACC 59.898 55.000 4.18 0.00 0.00 4.79
5008 5427 1.065102 TCTAGATTACAGTGCGCCGAC 59.935 52.381 4.18 0.00 0.00 4.79
5009 5428 1.385528 TCTAGATTACAGTGCGCCGA 58.614 50.000 4.18 0.00 0.00 5.54
5010 5429 2.423926 ATCTAGATTACAGTGCGCCG 57.576 50.000 4.18 0.00 0.00 6.46
5011 5430 4.099120 CGATATCTAGATTACAGTGCGCC 58.901 47.826 11.25 0.00 0.00 6.53
5012 5431 4.789119 GTCGATATCTAGATTACAGTGCGC 59.211 45.833 11.25 0.00 0.00 6.09
5013 5432 5.928153 TGTCGATATCTAGATTACAGTGCG 58.072 41.667 11.25 5.13 0.00 5.34
5014 5433 7.757526 AGATGTCGATATCTAGATTACAGTGC 58.242 38.462 21.63 5.39 35.70 4.40
5021 5440 9.733556 ACAGTCTAAGATGTCGATATCTAGATT 57.266 33.333 22.97 17.71 36.42 2.40
5022 5441 9.378551 GACAGTCTAAGATGTCGATATCTAGAT 57.621 37.037 22.97 10.73 36.42 1.98
5023 5442 8.766000 GACAGTCTAAGATGTCGATATCTAGA 57.234 38.462 22.97 20.20 36.42 2.43
5039 5458 3.431415 TGGCTGCTCTTAGACAGTCTAA 58.569 45.455 19.92 19.92 39.29 2.10
5040 5459 3.087370 TGGCTGCTCTTAGACAGTCTA 57.913 47.619 6.15 6.15 39.29 2.59
5041 5460 1.930251 TGGCTGCTCTTAGACAGTCT 58.070 50.000 8.50 8.50 39.29 3.24
5042 5461 2.977772 ATGGCTGCTCTTAGACAGTC 57.022 50.000 0.00 8.66 39.51 3.51
5043 5462 3.370104 ACTATGGCTGCTCTTAGACAGT 58.630 45.455 0.00 0.00 39.51 3.55
5044 5463 5.508825 CCTTACTATGGCTGCTCTTAGACAG 60.509 48.000 0.00 7.23 39.51 3.51
5045 5464 4.342378 CCTTACTATGGCTGCTCTTAGACA 59.658 45.833 0.00 0.00 40.65 3.41
5046 5465 4.262249 CCCTTACTATGGCTGCTCTTAGAC 60.262 50.000 0.00 0.00 0.00 2.59
5047 5466 3.898123 CCCTTACTATGGCTGCTCTTAGA 59.102 47.826 0.00 0.00 0.00 2.10
5048 5467 3.898123 TCCCTTACTATGGCTGCTCTTAG 59.102 47.826 0.00 4.82 0.00 2.18
5049 5468 3.923648 TCCCTTACTATGGCTGCTCTTA 58.076 45.455 0.00 0.00 0.00 2.10
5050 5469 2.764269 TCCCTTACTATGGCTGCTCTT 58.236 47.619 0.00 0.00 0.00 2.85
5051 5470 2.478872 TCCCTTACTATGGCTGCTCT 57.521 50.000 0.00 0.00 0.00 4.09
5052 5471 4.223923 ACATATCCCTTACTATGGCTGCTC 59.776 45.833 0.00 0.00 31.07 4.26
5053 5472 4.019860 CACATATCCCTTACTATGGCTGCT 60.020 45.833 0.00 0.00 31.07 4.24
5054 5473 4.256920 CACATATCCCTTACTATGGCTGC 58.743 47.826 0.00 0.00 31.07 5.25
5055 5474 4.256920 GCACATATCCCTTACTATGGCTG 58.743 47.826 0.00 0.00 31.07 4.85
5056 5475 3.264450 GGCACATATCCCTTACTATGGCT 59.736 47.826 0.00 0.00 31.07 4.75
5057 5476 3.009033 TGGCACATATCCCTTACTATGGC 59.991 47.826 0.00 0.00 31.07 4.40
5058 5477 4.908601 TGGCACATATCCCTTACTATGG 57.091 45.455 0.00 0.00 31.07 2.74
5075 5494 0.248843 TGACGCACACTATCATGGCA 59.751 50.000 0.00 0.00 0.00 4.92
5078 5497 4.604843 AACAATGACGCACACTATCATG 57.395 40.909 0.00 0.00 33.37 3.07
5079 5498 5.277490 GCATAACAATGACGCACACTATCAT 60.277 40.000 0.00 0.00 34.52 2.45
5080 5499 4.033932 GCATAACAATGACGCACACTATCA 59.966 41.667 0.00 0.00 0.00 2.15
5081 5500 4.518217 GCATAACAATGACGCACACTATC 58.482 43.478 0.00 0.00 0.00 2.08
5087 5506 0.248054 CGGGCATAACAATGACGCAC 60.248 55.000 0.00 0.00 0.00 5.34
5088 5507 1.372838 CCGGGCATAACAATGACGCA 61.373 55.000 0.00 0.00 0.00 5.24
5105 5524 1.024579 AACCTTTATGGAGCACGCCG 61.025 55.000 0.00 0.00 39.71 6.46
5109 5528 2.095059 CACTGCAACCTTTATGGAGCAC 60.095 50.000 5.35 0.00 42.18 4.40
5130 5550 2.893489 AGTTTTGTCTGGATCTTTGGCC 59.107 45.455 0.00 0.00 0.00 5.36
5136 5556 6.013379 TCCTGTCAATAGTTTTGTCTGGATCT 60.013 38.462 12.28 0.00 33.43 2.75
5174 5594 1.067283 ACAGCAGCAGCAGTAGTAGTG 60.067 52.381 3.17 0.17 45.49 2.74
5178 5598 0.107456 ACAACAGCAGCAGCAGTAGT 59.893 50.000 3.17 0.00 45.49 2.73
5181 5601 0.101759 CAAACAACAGCAGCAGCAGT 59.898 50.000 3.17 0.00 45.49 4.40
5182 5602 0.382873 TCAAACAACAGCAGCAGCAG 59.617 50.000 3.17 0.00 45.49 4.24
5194 5614 9.585099 GCATAGGAAATGATACAATTCAAACAA 57.415 29.630 0.00 0.00 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.