Multiple sequence alignment - TraesCS3A01G108400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G108400 chr3A 100.000 4315 0 0 1 4315 73928277 73932591 0.000 7969.0
1 TraesCS3A01G108400 chr3A 85.065 770 106 8 3257 4019 449109546 449110313 0.000 776.0
2 TraesCS3A01G108400 chr3A 100.000 29 0 0 2972 3000 73931165 73931193 0.002 54.7
3 TraesCS3A01G108400 chr3A 100.000 29 0 0 2889 2917 73931248 73931276 0.002 54.7
4 TraesCS3A01G108400 chr3B 82.789 1685 136 68 1644 3234 106119866 106121490 0.000 1363.0
5 TraesCS3A01G108400 chr3B 85.341 880 45 30 734 1569 106118994 106119833 0.000 833.0
6 TraesCS3A01G108400 chr3D 86.868 1226 62 41 2103 3246 64174131 64175339 0.000 1280.0
7 TraesCS3A01G108400 chr3D 84.543 1391 89 63 747 2079 64172758 64174080 0.000 1262.0
8 TraesCS3A01G108400 chr5D 84.922 1028 133 8 3297 4315 2293476 2292462 0.000 1020.0
9 TraesCS3A01G108400 chr5A 93.263 668 40 3 1 667 546515626 546516289 0.000 979.0
10 TraesCS3A01G108400 chr5A 92.125 673 36 9 1 670 644999237 644998579 0.000 933.0
11 TraesCS3A01G108400 chr5A 91.803 671 46 7 1 667 423242908 423243573 0.000 926.0
12 TraesCS3A01G108400 chr4A 92.846 671 40 5 1 670 583749332 583749995 0.000 966.0
13 TraesCS3A01G108400 chr4A 92.024 677 38 7 1 671 524280955 524280289 0.000 937.0
14 TraesCS3A01G108400 chr4A 90.909 671 42 12 1 667 45856457 45857112 0.000 883.0
15 TraesCS3A01G108400 chr2A 92.604 676 42 6 1 673 746929935 746930605 0.000 965.0
16 TraesCS3A01G108400 chr2A 81.627 996 167 11 3285 4270 488018687 488017698 0.000 811.0
17 TraesCS3A01G108400 chr2A 84.265 769 112 7 3257 4019 716883041 716882276 0.000 741.0
18 TraesCS3A01G108400 chr2D 82.908 1059 165 9 3264 4313 12139509 12140560 0.000 939.0
19 TraesCS3A01G108400 chr2D 85.087 751 108 4 3270 4019 29294843 29294096 0.000 763.0
20 TraesCS3A01G108400 chr1A 91.568 676 48 5 1 670 360473079 360472407 0.000 924.0
21 TraesCS3A01G108400 chr1A 91.085 673 44 8 1 670 256930473 256929814 0.000 896.0
22 TraesCS3A01G108400 chr5B 82.782 1028 154 12 3297 4315 3860648 3861661 0.000 896.0
23 TraesCS3A01G108400 chr1B 85.195 770 103 6 3257 4018 141761876 141761110 0.000 780.0
24 TraesCS3A01G108400 chr6D 84.371 755 101 11 3257 4003 91522577 91523322 0.000 725.0
25 TraesCS3A01G108400 chr1D 85.735 687 85 7 3251 3930 206038464 206039144 0.000 713.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G108400 chr3A 73928277 73932591 4314 False 2692.8 7969 100.0000 1 4315 3 chr3A.!!$F2 4314
1 TraesCS3A01G108400 chr3A 449109546 449110313 767 False 776.0 776 85.0650 3257 4019 1 chr3A.!!$F1 762
2 TraesCS3A01G108400 chr3B 106118994 106121490 2496 False 1098.0 1363 84.0650 734 3234 2 chr3B.!!$F1 2500
3 TraesCS3A01G108400 chr3D 64172758 64175339 2581 False 1271.0 1280 85.7055 747 3246 2 chr3D.!!$F1 2499
4 TraesCS3A01G108400 chr5D 2292462 2293476 1014 True 1020.0 1020 84.9220 3297 4315 1 chr5D.!!$R1 1018
5 TraesCS3A01G108400 chr5A 546515626 546516289 663 False 979.0 979 93.2630 1 667 1 chr5A.!!$F2 666
6 TraesCS3A01G108400 chr5A 644998579 644999237 658 True 933.0 933 92.1250 1 670 1 chr5A.!!$R1 669
7 TraesCS3A01G108400 chr5A 423242908 423243573 665 False 926.0 926 91.8030 1 667 1 chr5A.!!$F1 666
8 TraesCS3A01G108400 chr4A 583749332 583749995 663 False 966.0 966 92.8460 1 670 1 chr4A.!!$F2 669
9 TraesCS3A01G108400 chr4A 524280289 524280955 666 True 937.0 937 92.0240 1 671 1 chr4A.!!$R1 670
10 TraesCS3A01G108400 chr4A 45856457 45857112 655 False 883.0 883 90.9090 1 667 1 chr4A.!!$F1 666
11 TraesCS3A01G108400 chr2A 746929935 746930605 670 False 965.0 965 92.6040 1 673 1 chr2A.!!$F1 672
12 TraesCS3A01G108400 chr2A 488017698 488018687 989 True 811.0 811 81.6270 3285 4270 1 chr2A.!!$R1 985
13 TraesCS3A01G108400 chr2A 716882276 716883041 765 True 741.0 741 84.2650 3257 4019 1 chr2A.!!$R2 762
14 TraesCS3A01G108400 chr2D 12139509 12140560 1051 False 939.0 939 82.9080 3264 4313 1 chr2D.!!$F1 1049
15 TraesCS3A01G108400 chr2D 29294096 29294843 747 True 763.0 763 85.0870 3270 4019 1 chr2D.!!$R1 749
16 TraesCS3A01G108400 chr1A 360472407 360473079 672 True 924.0 924 91.5680 1 670 1 chr1A.!!$R2 669
17 TraesCS3A01G108400 chr1A 256929814 256930473 659 True 896.0 896 91.0850 1 670 1 chr1A.!!$R1 669
18 TraesCS3A01G108400 chr5B 3860648 3861661 1013 False 896.0 896 82.7820 3297 4315 1 chr5B.!!$F1 1018
19 TraesCS3A01G108400 chr1B 141761110 141761876 766 True 780.0 780 85.1950 3257 4018 1 chr1B.!!$R1 761
20 TraesCS3A01G108400 chr6D 91522577 91523322 745 False 725.0 725 84.3710 3257 4003 1 chr6D.!!$F1 746
21 TraesCS3A01G108400 chr1D 206038464 206039144 680 False 713.0 713 85.7350 3251 3930 1 chr1D.!!$F1 679

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
292 298 0.329261 CCAACCTGAGAAGGGATGCA 59.671 55.0 0.00 0.00 0.00 3.96 F
1628 1746 0.041576 TCGTGAGTCGTGACTTGTCG 60.042 55.0 3.69 9.35 42.66 4.35 F
2399 2597 0.107066 TCCTCGCCGGTACAGATACA 60.107 55.0 1.90 0.00 32.40 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1722 1852 0.244721 CACGCCATGAGTGAGTGAGA 59.755 55.0 13.73 0.0 41.83 3.27 R
2737 2966 0.107116 AGATACTCACCGACGAGGCT 60.107 55.0 0.00 0.0 46.52 4.58 R
3890 4170 0.601057 TCTTGAAGACATCGCCGTGA 59.399 50.0 0.00 0.0 0.00 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
219 221 2.254651 GAGGACGAGCACGACGTT 59.745 61.111 11.40 0.00 43.97 3.99
290 296 0.394899 GGCCAACCTGAGAAGGGATG 60.395 60.000 0.00 0.00 0.00 3.51
291 297 1.034292 GCCAACCTGAGAAGGGATGC 61.034 60.000 0.00 0.00 0.00 3.91
292 298 0.329261 CCAACCTGAGAAGGGATGCA 59.671 55.000 0.00 0.00 0.00 3.96
298 304 1.224039 GAGAAGGGATGCAGCAGCT 59.776 57.895 11.16 0.00 42.74 4.24
363 382 4.712425 GCGGCGGTGACTACACGT 62.712 66.667 9.78 0.00 46.77 4.49
378 397 1.605738 ACGTGGTTCTACCGCCTCT 60.606 57.895 3.98 0.00 45.71 3.69
539 562 2.809119 TCGTGTTTGCACCGTATTTGAT 59.191 40.909 0.00 0.00 42.39 2.57
644 670 2.927864 TTTTTGCCCCTCCCGTGA 59.072 55.556 0.00 0.00 0.00 4.35
687 713 3.248043 GGGCACTATGCACTCACAA 57.752 52.632 2.81 0.00 45.01 3.33
688 714 1.755179 GGGCACTATGCACTCACAAT 58.245 50.000 2.81 0.00 45.01 2.71
689 715 2.094675 GGGCACTATGCACTCACAATT 58.905 47.619 2.81 0.00 45.01 2.32
690 716 2.493278 GGGCACTATGCACTCACAATTT 59.507 45.455 2.81 0.00 45.01 1.82
691 717 3.056607 GGGCACTATGCACTCACAATTTT 60.057 43.478 2.81 0.00 45.01 1.82
692 718 4.561326 GGGCACTATGCACTCACAATTTTT 60.561 41.667 2.81 0.00 45.01 1.94
693 719 5.336372 GGGCACTATGCACTCACAATTTTTA 60.336 40.000 2.81 0.00 45.01 1.52
694 720 6.617289 GCACTATGCACTCACAATTTTTAC 57.383 37.500 0.00 0.00 44.26 2.01
695 721 6.381801 GCACTATGCACTCACAATTTTTACT 58.618 36.000 0.00 0.00 44.26 2.24
696 722 7.526608 GCACTATGCACTCACAATTTTTACTA 58.473 34.615 0.00 0.00 44.26 1.82
697 723 8.020819 GCACTATGCACTCACAATTTTTACTAA 58.979 33.333 0.00 0.00 44.26 2.24
698 724 9.546909 CACTATGCACTCACAATTTTTACTAAG 57.453 33.333 0.00 0.00 0.00 2.18
699 725 8.730680 ACTATGCACTCACAATTTTTACTAAGG 58.269 33.333 0.00 0.00 0.00 2.69
700 726 5.768317 TGCACTCACAATTTTTACTAAGGC 58.232 37.500 0.00 0.00 0.00 4.35
701 727 5.300539 TGCACTCACAATTTTTACTAAGGCA 59.699 36.000 0.00 0.00 0.00 4.75
702 728 5.629435 GCACTCACAATTTTTACTAAGGCAC 59.371 40.000 0.00 0.00 0.00 5.01
704 730 6.857964 CACTCACAATTTTTACTAAGGCACTG 59.142 38.462 0.00 0.00 40.86 3.66
705 731 6.546034 ACTCACAATTTTTACTAAGGCACTGT 59.454 34.615 0.00 0.00 40.86 3.55
706 732 7.068226 ACTCACAATTTTTACTAAGGCACTGTT 59.932 33.333 0.00 0.00 40.86 3.16
707 733 7.422399 TCACAATTTTTACTAAGGCACTGTTC 58.578 34.615 0.00 0.00 40.86 3.18
708 734 7.284489 TCACAATTTTTACTAAGGCACTGTTCT 59.716 33.333 0.00 0.00 40.86 3.01
709 735 8.564574 CACAATTTTTACTAAGGCACTGTTCTA 58.435 33.333 0.00 0.00 40.86 2.10
710 736 9.127277 ACAATTTTTACTAAGGCACTGTTCTAA 57.873 29.630 0.00 0.00 40.86 2.10
711 737 9.612620 CAATTTTTACTAAGGCACTGTTCTAAG 57.387 33.333 0.00 0.00 40.86 2.18
712 738 8.919777 ATTTTTACTAAGGCACTGTTCTAAGT 57.080 30.769 0.00 0.00 40.86 2.24
714 740 8.822652 TTTTACTAAGGCACTGTTCTAAGTAC 57.177 34.615 0.00 0.00 40.86 2.73
715 741 7.528996 TTACTAAGGCACTGTTCTAAGTACA 57.471 36.000 0.00 0.00 40.86 2.90
716 742 6.026947 ACTAAGGCACTGTTCTAAGTACAG 57.973 41.667 7.10 7.10 46.56 2.74
722 748 7.472945 AAGGCACTGTTCTAAGTACAGTATGTT 60.473 37.037 12.76 5.44 46.44 2.71
740 766 9.973246 CAGTATGTTAGTAGCAAAAATACAGTG 57.027 33.333 0.00 0.00 0.00 3.66
878 904 3.548745 TGAAGCCATCAGATCACGAAT 57.451 42.857 0.00 0.00 33.04 3.34
964 990 3.242641 GCTTTTCCTCCCGTTTATAAGCG 60.243 47.826 14.06 14.06 0.00 4.68
984 1010 0.525242 CAACAAGTGCACCACAACCG 60.525 55.000 14.63 0.00 36.74 4.44
986 1012 1.095228 ACAAGTGCACCACAACCGAG 61.095 55.000 14.63 0.00 36.74 4.63
1018 1052 0.251832 ACTCGCTCCTTCCTTCTCCA 60.252 55.000 0.00 0.00 0.00 3.86
1021 1055 1.223211 GCTCCTTCCTTCTCCAGCC 59.777 63.158 0.00 0.00 0.00 4.85
1025 1059 0.254462 CCTTCCTTCTCCAGCCCTTC 59.746 60.000 0.00 0.00 0.00 3.46
1026 1060 0.254462 CTTCCTTCTCCAGCCCTTCC 59.746 60.000 0.00 0.00 0.00 3.46
1027 1061 0.475632 TTCCTTCTCCAGCCCTTCCA 60.476 55.000 0.00 0.00 0.00 3.53
1028 1062 1.201429 TCCTTCTCCAGCCCTTCCAC 61.201 60.000 0.00 0.00 0.00 4.02
1029 1063 1.492133 CCTTCTCCAGCCCTTCCACA 61.492 60.000 0.00 0.00 0.00 4.17
1030 1064 0.322008 CTTCTCCAGCCCTTCCACAC 60.322 60.000 0.00 0.00 0.00 3.82
1031 1065 1.059584 TTCTCCAGCCCTTCCACACA 61.060 55.000 0.00 0.00 0.00 3.72
1051 1085 1.018226 CAAACCCGCAGCAGAGAGAG 61.018 60.000 0.00 0.00 0.00 3.20
1052 1092 1.188219 AAACCCGCAGCAGAGAGAGA 61.188 55.000 0.00 0.00 0.00 3.10
1053 1093 1.882989 AACCCGCAGCAGAGAGAGAC 61.883 60.000 0.00 0.00 0.00 3.36
1056 1096 1.062365 CGCAGCAGAGAGAGACGAG 59.938 63.158 0.00 0.00 0.00 4.18
1065 1105 2.695666 AGAGAGAGACGAGAGAGAGAGG 59.304 54.545 0.00 0.00 0.00 3.69
1066 1106 2.431057 GAGAGAGACGAGAGAGAGAGGT 59.569 54.545 0.00 0.00 0.00 3.85
1067 1107 2.431057 AGAGAGACGAGAGAGAGAGGTC 59.569 54.545 0.00 0.00 0.00 3.85
1154 1230 3.348967 CTCGTTTCCTTTCGCGGCG 62.349 63.158 17.70 17.70 0.00 6.46
1162 1238 4.656117 TTTCGCGGCGTCTGCTCA 62.656 61.111 22.90 0.00 42.25 4.26
1206 1285 2.770475 GGCCTTCCCTCCCTCCTC 60.770 72.222 0.00 0.00 0.00 3.71
1236 1318 1.975363 GATTCGTGCCAGTGCTGCTC 61.975 60.000 0.00 0.00 38.71 4.26
1384 1478 1.381076 CCTTTCCCGCAAACCCCTA 59.619 57.895 0.00 0.00 0.00 3.53
1533 1638 2.046507 CTGCACTGTGCCCTCCTC 60.047 66.667 28.17 1.43 44.23 3.71
1569 1684 1.451387 CATATATTCCGCCCCCGCC 60.451 63.158 0.00 0.00 0.00 6.13
1596 1714 2.804856 GCACGAGGAGAGGAGAGC 59.195 66.667 0.00 0.00 0.00 4.09
1598 1716 2.124487 ACGAGGAGAGGAGAGCCG 60.124 66.667 0.00 0.00 39.96 5.52
1608 1726 3.184683 GAGAGCCGCGCTTGTGAG 61.185 66.667 5.56 0.00 39.88 3.51
1610 1728 3.482783 GAGCCGCGCTTGTGAGTC 61.483 66.667 5.56 0.00 39.88 3.36
1613 1731 3.767230 CCGCGCTTGTGAGTCGTG 61.767 66.667 5.56 0.00 34.77 4.35
1614 1732 2.729491 CGCGCTTGTGAGTCGTGA 60.729 61.111 5.56 0.00 36.04 4.35
1615 1733 2.710971 CGCGCTTGTGAGTCGTGAG 61.711 63.158 5.56 0.00 36.04 3.51
1616 1734 1.661821 GCGCTTGTGAGTCGTGAGT 60.662 57.895 0.00 0.00 0.00 3.41
1617 1735 1.609840 GCGCTTGTGAGTCGTGAGTC 61.610 60.000 0.00 0.00 0.00 3.36
1618 1736 1.330779 CGCTTGTGAGTCGTGAGTCG 61.331 60.000 0.60 0.00 41.41 4.18
1619 1737 0.317938 GCTTGTGAGTCGTGAGTCGT 60.318 55.000 0.60 0.00 40.80 4.34
1620 1738 1.399572 CTTGTGAGTCGTGAGTCGTG 58.600 55.000 0.60 0.00 40.80 4.35
1621 1739 1.002792 CTTGTGAGTCGTGAGTCGTGA 60.003 52.381 0.60 0.00 40.80 4.35
1622 1740 0.306840 TGTGAGTCGTGAGTCGTGAC 59.693 55.000 6.48 6.48 40.80 3.67
1623 1741 0.587285 GTGAGTCGTGAGTCGTGACT 59.413 55.000 14.83 14.83 45.18 3.41
1624 1742 1.002684 GTGAGTCGTGAGTCGTGACTT 60.003 52.381 15.72 3.43 42.71 3.01
1625 1743 1.002792 TGAGTCGTGAGTCGTGACTTG 60.003 52.381 15.72 0.00 42.71 3.16
1626 1744 1.002684 GAGTCGTGAGTCGTGACTTGT 60.003 52.381 15.72 0.00 42.71 3.16
1627 1745 1.002684 AGTCGTGAGTCGTGACTTGTC 60.003 52.381 10.41 0.00 42.66 3.18
1628 1746 0.041576 TCGTGAGTCGTGACTTGTCG 60.042 55.000 3.69 9.35 42.66 4.35
1629 1747 0.997226 CGTGAGTCGTGACTTGTCGG 60.997 60.000 3.69 0.00 42.66 4.79
1630 1748 0.309922 GTGAGTCGTGACTTGTCGGA 59.690 55.000 3.69 0.00 42.66 4.55
1631 1749 0.591659 TGAGTCGTGACTTGTCGGAG 59.408 55.000 3.69 0.00 42.66 4.63
1632 1750 0.729816 GAGTCGTGACTTGTCGGAGC 60.730 60.000 3.69 0.00 42.66 4.70
1633 1751 1.733399 GTCGTGACTTGTCGGAGCC 60.733 63.158 0.00 0.00 0.00 4.70
1634 1752 2.197605 TCGTGACTTGTCGGAGCCA 61.198 57.895 0.00 0.00 0.00 4.75
1635 1753 1.734477 CGTGACTTGTCGGAGCCAG 60.734 63.158 0.00 0.00 0.00 4.85
1636 1754 2.029844 GTGACTTGTCGGAGCCAGC 61.030 63.158 0.00 0.00 0.00 4.85
1637 1755 2.210013 TGACTTGTCGGAGCCAGCT 61.210 57.895 0.00 0.00 0.00 4.24
1638 1756 1.446966 GACTTGTCGGAGCCAGCTC 60.447 63.158 11.28 11.28 42.04 4.09
1652 1774 0.385029 CAGCTCCTCTGTCTCCATCG 59.615 60.000 0.00 0.00 38.02 3.84
1655 1777 0.385029 CTCCTCTGTCTCCATCGCTG 59.615 60.000 0.00 0.00 0.00 5.18
1717 1847 3.787001 GAGCTTGCTAGGGGCGGT 61.787 66.667 0.00 0.00 45.43 5.68
1718 1848 3.330720 AGCTTGCTAGGGGCGGTT 61.331 61.111 0.00 0.00 45.43 4.44
1720 1850 2.668632 CTTGCTAGGGGCGGTTGA 59.331 61.111 0.00 0.00 45.43 3.18
1721 1851 1.745489 CTTGCTAGGGGCGGTTGAC 60.745 63.158 0.00 0.00 45.43 3.18
1722 1852 2.185310 CTTGCTAGGGGCGGTTGACT 62.185 60.000 0.00 0.00 45.43 3.41
1723 1853 2.180159 TTGCTAGGGGCGGTTGACTC 62.180 60.000 0.00 0.00 45.43 3.36
1724 1854 2.359967 GCTAGGGGCGGTTGACTCT 61.360 63.158 0.00 0.00 0.00 3.24
1725 1855 1.817209 CTAGGGGCGGTTGACTCTC 59.183 63.158 0.00 0.00 0.00 3.20
1852 1985 1.781555 CAGGTACGTCTGCTTTGCG 59.218 57.895 0.00 0.00 0.00 4.85
1853 1986 0.666274 CAGGTACGTCTGCTTTGCGA 60.666 55.000 0.00 0.00 0.00 5.10
1854 1987 0.666577 AGGTACGTCTGCTTTGCGAC 60.667 55.000 0.00 0.00 0.00 5.19
1857 1990 2.465920 CGTCTGCTTTGCGACGTC 59.534 61.111 19.82 5.18 43.93 4.34
1858 1991 2.465920 GTCTGCTTTGCGACGTCG 59.534 61.111 32.57 32.57 43.27 5.12
1859 1992 2.014554 GTCTGCTTTGCGACGTCGA 61.015 57.895 39.74 22.22 43.02 4.20
1860 1993 1.080772 TCTGCTTTGCGACGTCGAT 60.081 52.632 39.74 0.00 43.02 3.59
1861 1994 1.071019 TCTGCTTTGCGACGTCGATC 61.071 55.000 39.74 23.72 43.02 3.69
1862 1995 2.014093 CTGCTTTGCGACGTCGATCC 62.014 60.000 39.74 22.99 43.02 3.36
1863 1996 2.987593 CTTTGCGACGTCGATCCG 59.012 61.111 39.74 20.56 43.02 4.18
1864 1997 1.800315 CTTTGCGACGTCGATCCGT 60.800 57.895 39.74 0.15 45.18 4.69
1865 1998 1.342082 CTTTGCGACGTCGATCCGTT 61.342 55.000 39.74 0.00 41.98 4.44
1866 1999 0.109827 TTTGCGACGTCGATCCGTTA 60.110 50.000 39.74 14.59 41.98 3.18
1867 2000 0.521867 TTGCGACGTCGATCCGTTAG 60.522 55.000 39.74 9.55 41.98 2.34
1887 2020 3.145286 AGTTTCTTCTTCTTGCTGCTCC 58.855 45.455 0.00 0.00 0.00 4.70
1888 2021 2.191128 TTCTTCTTCTTGCTGCTCCC 57.809 50.000 0.00 0.00 0.00 4.30
1890 2023 1.002888 TCTTCTTCTTGCTGCTCCCTG 59.997 52.381 0.00 0.00 0.00 4.45
1891 2024 0.607489 TTCTTCTTGCTGCTCCCTGC 60.607 55.000 0.00 0.00 43.25 4.85
1892 2025 2.034687 TTCTTGCTGCTCCCTGCC 59.965 61.111 0.00 0.00 42.00 4.85
1893 2026 2.481307 CTTCTTGCTGCTCCCTGCCT 62.481 60.000 0.00 0.00 42.00 4.75
1897 2030 3.790437 GCTGCTCCCTGCCTGCTA 61.790 66.667 0.00 0.00 42.00 3.49
1898 2031 2.188994 CTGCTCCCTGCCTGCTAC 59.811 66.667 0.00 0.00 42.00 3.58
1899 2032 2.607442 TGCTCCCTGCCTGCTACA 60.607 61.111 0.00 0.00 42.00 2.74
1900 2033 1.980784 CTGCTCCCTGCCTGCTACAT 61.981 60.000 0.00 0.00 42.00 2.29
1904 2039 1.765314 CTCCCTGCCTGCTACATACTT 59.235 52.381 0.00 0.00 0.00 2.24
1927 2062 4.395854 TGTTGATCATCCGAGTTTTCATGG 59.604 41.667 0.00 0.00 0.00 3.66
1930 2065 5.439721 TGATCATCCGAGTTTTCATGGATT 58.560 37.500 0.00 0.00 39.16 3.01
1934 2069 5.123820 TCATCCGAGTTTTCATGGATTTGTC 59.876 40.000 0.00 0.00 39.16 3.18
1937 2072 4.161333 CGAGTTTTCATGGATTTGTCTGC 58.839 43.478 0.00 0.00 0.00 4.26
1948 2083 0.453793 TTTGTCTGCGTTTGTGGTGG 59.546 50.000 0.00 0.00 0.00 4.61
1954 2089 3.030652 CGTTTGTGGTGGCAGGTC 58.969 61.111 0.00 0.00 0.00 3.85
2004 2139 1.656818 CCGGTGATTTTGCTCGCCAT 61.657 55.000 0.00 0.00 44.49 4.40
2008 2143 1.097232 TGATTTTGCTCGCCATCCTG 58.903 50.000 0.00 0.00 0.00 3.86
2010 2145 1.952296 GATTTTGCTCGCCATCCTGAT 59.048 47.619 0.00 0.00 0.00 2.90
2059 2194 8.547894 CCAAGTAGGCAAAAACTTTATTTTCAC 58.452 33.333 0.00 0.00 33.72 3.18
2060 2195 9.092876 CAAGTAGGCAAAAACTTTATTTTCACA 57.907 29.630 0.00 0.00 33.72 3.58
2079 2214 1.736126 CAGTTGCAGCGTTGATCTGAT 59.264 47.619 2.38 0.00 33.54 2.90
2080 2215 1.736126 AGTTGCAGCGTTGATCTGATG 59.264 47.619 2.38 0.00 33.54 3.07
2081 2216 1.733912 GTTGCAGCGTTGATCTGATGA 59.266 47.619 2.38 0.00 33.54 2.92
2099 2252 8.007405 TCTGATGATCGTCCTGTTCTTTTATA 57.993 34.615 12.42 0.00 0.00 0.98
2107 2281 5.287992 CGTCCTGTTCTTTTATACTTCGTCC 59.712 44.000 0.00 0.00 0.00 4.79
2342 2540 3.827898 GAGGACGGCAGCTACGCT 61.828 66.667 9.61 0.67 40.77 5.07
2394 2592 4.208686 GCCTCCTCGCCGGTACAG 62.209 72.222 1.90 0.00 0.00 2.74
2396 2594 1.828660 CCTCCTCGCCGGTACAGAT 60.829 63.158 1.90 0.00 0.00 2.90
2397 2595 0.536687 CCTCCTCGCCGGTACAGATA 60.537 60.000 1.90 0.00 0.00 1.98
2399 2597 0.107066 TCCTCGCCGGTACAGATACA 60.107 55.000 1.90 0.00 32.40 2.29
2400 2598 0.959553 CCTCGCCGGTACAGATACAT 59.040 55.000 1.90 0.00 32.40 2.29
2403 2601 1.881973 TCGCCGGTACAGATACATACC 59.118 52.381 1.90 0.00 37.99 2.73
2456 2659 2.094442 GTCAGTCAGCCTTGTACTCTCC 60.094 54.545 0.00 0.00 0.00 3.71
2472 2675 0.177604 CTCCTGGTCTCACTCATGCC 59.822 60.000 0.00 0.00 0.00 4.40
2620 2837 2.254546 TGGCAGTAAGTCAACACCTG 57.745 50.000 0.00 0.00 0.00 4.00
2621 2838 1.765904 TGGCAGTAAGTCAACACCTGA 59.234 47.619 0.00 0.00 0.00 3.86
2631 2848 3.055094 AGTCAACACCTGAGACAAGTTGT 60.055 43.478 8.61 8.61 40.19 3.32
2643 2864 6.701340 TGAGACAAGTTGTAACTATGCTGAT 58.299 36.000 8.88 0.00 38.57 2.90
2657 2878 6.047870 ACTATGCTGATTCTGATGAACTGAC 58.952 40.000 0.00 0.00 34.71 3.51
2658 2879 4.276058 TGCTGATTCTGATGAACTGACA 57.724 40.909 0.00 0.00 34.71 3.58
2661 2882 5.708697 TGCTGATTCTGATGAACTGACAAAT 59.291 36.000 0.00 0.00 34.71 2.32
2663 2884 6.093771 GCTGATTCTGATGAACTGACAAATCT 59.906 38.462 0.00 0.00 34.71 2.40
2664 2885 7.606858 TGATTCTGATGAACTGACAAATCTC 57.393 36.000 0.00 0.00 34.71 2.75
2665 2886 6.312180 TGATTCTGATGAACTGACAAATCTCG 59.688 38.462 0.00 0.00 34.71 4.04
2666 2887 5.139435 TCTGATGAACTGACAAATCTCGT 57.861 39.130 0.00 0.00 0.00 4.18
2669 2890 4.925646 TGATGAACTGACAAATCTCGTCTG 59.074 41.667 0.00 0.00 38.06 3.51
2698 2927 1.001860 TGCAGGATGTTCATCGTCACA 59.998 47.619 5.23 4.89 39.31 3.58
2719 2948 4.093291 AAGAGGCTGCGAGGGCTG 62.093 66.667 8.67 0.00 42.23 4.85
2737 2966 2.604686 AAGAGCTCCGACCTGCCA 60.605 61.111 10.93 0.00 0.00 4.92
2758 2987 0.945813 CCTCGTCGGTGAGTATCTCC 59.054 60.000 0.00 0.00 45.04 3.71
2779 3008 2.797156 CGGAATAAGTCTGAATCCTGCG 59.203 50.000 0.00 0.00 34.07 5.18
2783 3012 0.322975 AAGTCTGAATCCTGCGCACT 59.677 50.000 5.66 0.00 0.00 4.40
2784 3013 1.186200 AGTCTGAATCCTGCGCACTA 58.814 50.000 5.66 0.00 0.00 2.74
2809 3038 2.877360 TACGCCGGTCGAATCAGCAC 62.877 60.000 22.10 0.00 41.67 4.40
2898 3127 3.047877 GCGGCCGCGGCTATAATT 61.048 61.111 45.23 0.00 41.60 1.40
2899 3128 1.738830 GCGGCCGCGGCTATAATTA 60.739 57.895 45.23 0.00 41.60 1.40
2902 3131 1.641577 GGCCGCGGCTATAATTAGAG 58.358 55.000 45.23 8.02 41.60 2.43
2903 3132 1.000145 GCCGCGGCTATAATTAGAGC 59.000 55.000 41.71 21.29 39.68 4.09
2912 3141 4.872664 GCTATAATTAGAGCCGTGTCTGT 58.127 43.478 19.26 0.00 34.63 3.41
2913 3142 4.681942 GCTATAATTAGAGCCGTGTCTGTG 59.318 45.833 19.26 0.00 34.63 3.66
2914 3143 5.507482 GCTATAATTAGAGCCGTGTCTGTGA 60.507 44.000 19.26 0.00 34.63 3.58
2915 3144 2.656560 ATTAGAGCCGTGTCTGTGAC 57.343 50.000 0.00 0.00 0.00 3.67
2917 3146 0.604511 TAGAGCCGTGTCTGTGACGA 60.605 55.000 0.00 0.00 39.21 4.20
2919 3148 2.430921 GCCGTGTCTGTGACGAGG 60.431 66.667 0.00 6.82 39.21 4.63
2920 3149 2.258591 CCGTGTCTGTGACGAGGG 59.741 66.667 0.00 0.00 39.21 4.30
2921 3150 2.561956 CCGTGTCTGTGACGAGGGT 61.562 63.158 0.00 0.00 39.21 4.34
2925 3154 2.352421 CGTGTCTGTGACGAGGGTTAAT 60.352 50.000 0.00 0.00 39.21 1.40
2926 3155 3.251571 GTGTCTGTGACGAGGGTTAATC 58.748 50.000 0.00 0.00 34.95 1.75
2927 3156 2.232941 TGTCTGTGACGAGGGTTAATCC 59.767 50.000 0.00 0.00 34.95 3.01
2928 3157 2.496470 GTCTGTGACGAGGGTTAATCCT 59.504 50.000 7.10 7.10 40.43 3.24
2929 3158 2.496070 TCTGTGACGAGGGTTAATCCTG 59.504 50.000 13.40 7.32 37.25 3.86
2937 3168 4.258543 CGAGGGTTAATCCTGTTTTGCTA 58.741 43.478 13.40 0.00 37.25 3.49
2998 3257 2.656560 ATTAGAGCCGTGTCTGTGAC 57.343 50.000 0.00 0.00 0.00 3.67
3002 3261 3.406361 GCCGTGTCTGTGACGCTG 61.406 66.667 9.16 4.44 40.44 5.18
3037 3297 0.380378 CCATCGTGGCCGTATTTTGG 59.620 55.000 0.00 0.00 35.01 3.28
3075 3336 0.806868 AACTAGATGCGTTCGTCGGA 59.193 50.000 0.00 2.76 45.01 4.55
3135 3396 7.693952 AGTGGTATAATTGCACAAATACTTCG 58.306 34.615 9.95 0.00 0.00 3.79
3136 3397 7.335924 AGTGGTATAATTGCACAAATACTTCGT 59.664 33.333 9.95 0.00 0.00 3.85
3137 3398 7.428183 GTGGTATAATTGCACAAATACTTCGTG 59.572 37.037 9.95 0.00 0.00 4.35
3167 3428 2.611518 TCTTTGCCGGTTGTTTGTTTG 58.388 42.857 1.90 0.00 0.00 2.93
3182 3451 0.317020 GTTTGTGGTGCTGCTCGAAC 60.317 55.000 0.00 0.37 0.00 3.95
3183 3452 0.746204 TTTGTGGTGCTGCTCGAACA 60.746 50.000 0.00 3.11 0.00 3.18
3202 3471 2.091885 ACAGTGTTGGTTCAGGTCCAAT 60.092 45.455 0.00 0.00 45.01 3.16
3219 3488 6.049149 GGTCCAATTTCTTCTGATCGATGTA 58.951 40.000 0.54 0.00 0.00 2.29
3221 3490 7.872993 GGTCCAATTTCTTCTGATCGATGTATA 59.127 37.037 0.54 0.00 0.00 1.47
3222 3491 8.920665 GTCCAATTTCTTCTGATCGATGTATAG 58.079 37.037 0.54 0.00 0.00 1.31
3255 3524 8.918202 AAAAGGACACACATGTAGAATTTAGA 57.082 30.769 0.00 0.00 39.95 2.10
3282 3553 6.884472 TTAGAAAGATGATTACCCCTGACA 57.116 37.500 0.00 0.00 0.00 3.58
3293 3564 3.404869 ACCCCTGACATCTGTATCTGA 57.595 47.619 0.00 0.00 0.00 3.27
3367 3639 4.199432 ACATCAAGTAGTCTGAAGCCAG 57.801 45.455 0.00 0.00 41.74 4.85
3379 3651 2.950309 CTGAAGCCAGCATCTTAGCAAT 59.050 45.455 0.00 0.00 36.85 3.56
3383 3655 3.217626 AGCCAGCATCTTAGCAATAACC 58.782 45.455 0.00 0.00 36.85 2.85
3391 3663 4.579454 TCTTAGCAATAACCGTCGCTAT 57.421 40.909 0.00 0.00 36.87 2.97
3392 3664 5.694231 TCTTAGCAATAACCGTCGCTATA 57.306 39.130 0.00 0.00 36.87 1.31
3443 3715 5.733620 AGTCCGAGTCTAATACCAAACAA 57.266 39.130 0.00 0.00 0.00 2.83
3452 3724 6.374333 AGTCTAATACCAAACAAACATCGCAT 59.626 34.615 0.00 0.00 0.00 4.73
3490 3765 3.170362 CAGAGGCCCCAACCAAGA 58.830 61.111 0.00 0.00 0.00 3.02
3494 3769 2.983592 GGCCCCAACCAAGACACG 60.984 66.667 0.00 0.00 0.00 4.49
3497 3772 0.322187 GCCCCAACCAAGACACGTAT 60.322 55.000 0.00 0.00 0.00 3.06
3522 3797 2.197324 GGGGCACAAACTGGTCCA 59.803 61.111 0.00 0.00 0.00 4.02
3532 3807 1.045407 AACTGGTCCAACGCACTCTA 58.955 50.000 0.00 0.00 0.00 2.43
3565 3840 1.425066 GCCATCCTCCACCAATCCATA 59.575 52.381 0.00 0.00 0.00 2.74
3599 3874 0.034574 TAATGCACCGACCTTGCCAT 60.035 50.000 0.00 0.00 39.39 4.40
3628 3904 1.105457 CCATCAACGCCACCATGATT 58.895 50.000 0.00 0.00 31.65 2.57
3671 3950 2.280389 CCATCTCCACGCATCGGG 60.280 66.667 0.00 0.00 0.00 5.14
3686 3965 4.803426 GGGCGCTGAGTCTCCACG 62.803 72.222 7.64 7.13 0.00 4.94
3691 3970 3.753434 CTGAGTCTCCACGGCGCT 61.753 66.667 6.90 0.00 0.00 5.92
3726 4005 1.523758 GCCGCCCTGAATGTATAAGG 58.476 55.000 0.00 0.00 0.00 2.69
3757 4037 2.028112 TCCCATCAAAGAAGTCGTCCTG 60.028 50.000 0.00 0.00 0.00 3.86
3765 4045 1.458777 AAGTCGTCCTGTGGTCCCA 60.459 57.895 0.00 0.00 0.00 4.37
3789 4069 1.549170 GTCCGTGTGTACCTCCAAGAT 59.451 52.381 0.00 0.00 0.00 2.40
3822 4102 1.494721 GGGGGAAATGATACCAGAGCA 59.505 52.381 0.00 0.00 0.00 4.26
3826 4106 2.420129 GGAAATGATACCAGAGCACCGT 60.420 50.000 0.00 0.00 0.00 4.83
3858 4138 4.995881 GATCTACCGATCTAGGGTTTCCCA 60.996 50.000 7.60 0.00 43.35 4.37
3890 4170 4.133078 CAGAGAGTGGCTTTGAACTTCTT 58.867 43.478 0.00 0.00 30.53 2.52
3921 4201 1.684983 TCTTCAAGAAGGGAACGACGT 59.315 47.619 9.73 0.00 38.88 4.34
3930 4210 1.513586 GGAACGACGTAGACAGCGG 60.514 63.158 0.00 0.00 0.00 5.52
3974 4254 1.000274 GCCGAAAGCATGTTTTCACCT 60.000 47.619 27.66 0.00 42.97 4.00
4006 4286 4.118410 CGAAGAAACTCCATCTCTCATGG 58.882 47.826 0.00 0.00 40.48 3.66
4015 4295 3.461773 CTCTCATGGACGGGCCGT 61.462 66.667 34.81 34.81 45.10 5.68
4038 4318 3.569210 CCACCAGCACCACCAGGA 61.569 66.667 0.00 0.00 38.69 3.86
4051 4331 4.662961 CAGGACGAGCACACGCCA 62.663 66.667 0.00 0.00 39.83 5.69
4122 4402 3.677284 CTCACAGGCTGCATCGGCT 62.677 63.158 15.89 0.00 41.91 5.52
4147 4431 1.596934 GAGCACCACCCAGATTCGA 59.403 57.895 0.00 0.00 0.00 3.71
4235 4520 4.680237 CCACAGAACGAGCCGCCA 62.680 66.667 0.00 0.00 0.00 5.69
4250 4535 1.227999 CGCCACCGAAGCTTCAAAGA 61.228 55.000 25.47 0.00 36.29 2.52
4273 4558 2.283101 GCCACCAAGCCACCATCA 60.283 61.111 0.00 0.00 0.00 3.07
4281 4566 2.173519 CAAGCCACCATCAGGAACAAT 58.826 47.619 0.00 0.00 38.69 2.71
4283 4568 2.173519 AGCCACCATCAGGAACAATTG 58.826 47.619 3.24 3.24 38.69 2.32
4308 4593 2.052690 CGCGAGGAAGGAGGGAGAA 61.053 63.158 0.00 0.00 0.00 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
215 217 2.029073 CGCTGAGGACCACAACGT 59.971 61.111 6.56 0.00 0.00 3.99
219 221 2.596338 TCGTCGCTGAGGACCACA 60.596 61.111 0.00 0.00 33.30 4.17
271 277 0.394899 CATCCCTTCTCAGGTTGGCC 60.395 60.000 0.00 0.00 38.79 5.36
279 285 1.077930 GCTGCTGCATCCCTTCTCA 60.078 57.895 11.11 0.00 39.41 3.27
281 287 1.077644 CAGCTGCTGCATCCCTTCT 60.078 57.895 17.73 0.00 42.74 2.85
283 289 2.044252 CCAGCTGCTGCATCCCTT 60.044 61.111 23.86 0.00 42.74 3.95
363 382 1.601419 CCGAAGAGGCGGTAGAACCA 61.601 60.000 0.00 0.00 46.07 3.67
484 507 2.348218 GCAAACATCGTCGAGTTCGTTT 60.348 45.455 0.00 5.23 40.80 3.60
495 518 6.305399 CGACTCAAATTTAATGCAAACATCGT 59.695 34.615 0.00 0.00 34.62 3.73
583 606 1.514087 CTAAACCGCGCACTAGGGA 59.486 57.895 8.75 0.00 0.00 4.20
672 698 9.546909 CTTAGTAAAAATTGTGAGTGCATAGTG 57.453 33.333 0.00 0.00 0.00 2.74
673 699 8.730680 CCTTAGTAAAAATTGTGAGTGCATAGT 58.269 33.333 0.00 0.00 0.00 2.12
674 700 7.698130 GCCTTAGTAAAAATTGTGAGTGCATAG 59.302 37.037 0.00 0.00 0.00 2.23
675 701 7.175816 TGCCTTAGTAAAAATTGTGAGTGCATA 59.824 33.333 0.00 0.00 0.00 3.14
676 702 6.015519 TGCCTTAGTAAAAATTGTGAGTGCAT 60.016 34.615 0.00 0.00 0.00 3.96
677 703 5.300539 TGCCTTAGTAAAAATTGTGAGTGCA 59.699 36.000 0.00 0.00 0.00 4.57
678 704 5.629435 GTGCCTTAGTAAAAATTGTGAGTGC 59.371 40.000 0.00 0.00 0.00 4.40
679 705 6.857964 CAGTGCCTTAGTAAAAATTGTGAGTG 59.142 38.462 0.00 0.00 0.00 3.51
680 706 6.546034 ACAGTGCCTTAGTAAAAATTGTGAGT 59.454 34.615 0.00 0.00 0.00 3.41
681 707 6.970484 ACAGTGCCTTAGTAAAAATTGTGAG 58.030 36.000 0.00 0.00 0.00 3.51
682 708 6.952773 ACAGTGCCTTAGTAAAAATTGTGA 57.047 33.333 0.00 0.00 0.00 3.58
683 709 7.425606 AGAACAGTGCCTTAGTAAAAATTGTG 58.574 34.615 0.00 0.00 0.00 3.33
684 710 7.582667 AGAACAGTGCCTTAGTAAAAATTGT 57.417 32.000 0.00 0.00 0.00 2.71
685 711 9.612620 CTTAGAACAGTGCCTTAGTAAAAATTG 57.387 33.333 0.00 0.00 0.00 2.32
686 712 9.350951 ACTTAGAACAGTGCCTTAGTAAAAATT 57.649 29.630 3.79 0.00 0.00 1.82
687 713 8.919777 ACTTAGAACAGTGCCTTAGTAAAAAT 57.080 30.769 3.79 0.00 0.00 1.82
688 714 9.264719 GTACTTAGAACAGTGCCTTAGTAAAAA 57.735 33.333 11.27 0.00 29.78 1.94
689 715 8.423349 TGTACTTAGAACAGTGCCTTAGTAAAA 58.577 33.333 11.27 4.13 29.78 1.52
690 716 7.954835 TGTACTTAGAACAGTGCCTTAGTAAA 58.045 34.615 11.27 6.07 29.78 2.01
691 717 7.528996 TGTACTTAGAACAGTGCCTTAGTAA 57.471 36.000 11.27 3.68 29.78 2.24
692 718 7.154435 CTGTACTTAGAACAGTGCCTTAGTA 57.846 40.000 7.50 7.50 39.61 1.82
693 719 6.026947 CTGTACTTAGAACAGTGCCTTAGT 57.973 41.667 8.98 8.98 39.61 2.24
703 729 9.234827 TGCTACTAACATACTGTACTTAGAACA 57.765 33.333 15.82 10.13 0.00 3.18
713 739 9.720769 ACTGTATTTTTGCTACTAACATACTGT 57.279 29.630 0.00 0.00 0.00 3.55
714 740 9.973246 CACTGTATTTTTGCTACTAACATACTG 57.027 33.333 0.00 0.00 0.00 2.74
715 741 9.162764 CCACTGTATTTTTGCTACTAACATACT 57.837 33.333 0.00 0.00 0.00 2.12
716 742 8.395633 CCCACTGTATTTTTGCTACTAACATAC 58.604 37.037 0.00 0.00 0.00 2.39
717 743 7.554835 CCCCACTGTATTTTTGCTACTAACATA 59.445 37.037 0.00 0.00 0.00 2.29
718 744 6.377146 CCCCACTGTATTTTTGCTACTAACAT 59.623 38.462 0.00 0.00 0.00 2.71
719 745 5.708230 CCCCACTGTATTTTTGCTACTAACA 59.292 40.000 0.00 0.00 0.00 2.41
720 746 5.941647 TCCCCACTGTATTTTTGCTACTAAC 59.058 40.000 0.00 0.00 0.00 2.34
721 747 6.129414 TCCCCACTGTATTTTTGCTACTAA 57.871 37.500 0.00 0.00 0.00 2.24
722 748 5.249852 ACTCCCCACTGTATTTTTGCTACTA 59.750 40.000 0.00 0.00 0.00 1.82
723 749 4.042934 ACTCCCCACTGTATTTTTGCTACT 59.957 41.667 0.00 0.00 0.00 2.57
724 750 4.332828 ACTCCCCACTGTATTTTTGCTAC 58.667 43.478 0.00 0.00 0.00 3.58
725 751 4.585879 GACTCCCCACTGTATTTTTGCTA 58.414 43.478 0.00 0.00 0.00 3.49
726 752 3.421844 GACTCCCCACTGTATTTTTGCT 58.578 45.455 0.00 0.00 0.00 3.91
727 753 2.161609 CGACTCCCCACTGTATTTTTGC 59.838 50.000 0.00 0.00 0.00 3.68
728 754 2.747446 CCGACTCCCCACTGTATTTTTG 59.253 50.000 0.00 0.00 0.00 2.44
729 755 2.290705 CCCGACTCCCCACTGTATTTTT 60.291 50.000 0.00 0.00 0.00 1.94
730 756 1.280998 CCCGACTCCCCACTGTATTTT 59.719 52.381 0.00 0.00 0.00 1.82
731 757 0.909623 CCCGACTCCCCACTGTATTT 59.090 55.000 0.00 0.00 0.00 1.40
732 758 0.042131 TCCCGACTCCCCACTGTATT 59.958 55.000 0.00 0.00 0.00 1.89
878 904 4.881273 CGATCCCACTGTTTCCATTATTCA 59.119 41.667 0.00 0.00 0.00 2.57
984 1010 1.600916 GAGTGTGTGGGTTGGGCTC 60.601 63.158 0.00 0.00 0.00 4.70
986 1012 2.978010 CGAGTGTGTGGGTTGGGC 60.978 66.667 0.00 0.00 0.00 5.36
1018 1052 0.755327 GGTTTGTGTGTGGAAGGGCT 60.755 55.000 0.00 0.00 0.00 5.19
1021 1055 2.029743 CGGGTTTGTGTGTGGAAGG 58.970 57.895 0.00 0.00 0.00 3.46
1025 1059 2.721231 CTGCGGGTTTGTGTGTGG 59.279 61.111 0.00 0.00 0.00 4.17
1026 1060 2.026014 GCTGCGGGTTTGTGTGTG 59.974 61.111 0.00 0.00 0.00 3.82
1027 1061 2.439338 TGCTGCGGGTTTGTGTGT 60.439 55.556 0.00 0.00 0.00 3.72
1028 1062 2.121564 CTCTGCTGCGGGTTTGTGTG 62.122 60.000 8.89 0.00 0.00 3.82
1029 1063 1.893808 CTCTGCTGCGGGTTTGTGT 60.894 57.895 8.89 0.00 0.00 3.72
1030 1064 1.572085 CTCTCTGCTGCGGGTTTGTG 61.572 60.000 8.89 0.00 0.00 3.33
1031 1065 1.302033 CTCTCTGCTGCGGGTTTGT 60.302 57.895 8.89 0.00 0.00 2.83
1051 1085 2.466846 CTACGACCTCTCTCTCTCGTC 58.533 57.143 0.00 0.00 39.88 4.20
1052 1092 1.137479 CCTACGACCTCTCTCTCTCGT 59.863 57.143 0.00 0.00 41.93 4.18
1053 1093 1.860676 CCTACGACCTCTCTCTCTCG 58.139 60.000 0.00 0.00 0.00 4.04
1056 1096 1.305201 CTGCCTACGACCTCTCTCTC 58.695 60.000 0.00 0.00 0.00 3.20
1065 1105 3.488090 GCAACGGCTGCCTACGAC 61.488 66.667 17.92 0.00 46.13 4.34
1163 1239 3.516866 GGAGGGATTCCGGCGTAGC 62.517 68.421 6.01 0.00 45.89 3.58
1189 1265 2.770475 GAGGAGGGAGGGAAGGCC 60.770 72.222 0.00 0.00 0.00 5.19
1204 1283 2.865670 GCACGAATCTAGGCCATGAGAG 60.866 54.545 5.01 0.91 0.00 3.20
1205 1284 1.069204 GCACGAATCTAGGCCATGAGA 59.931 52.381 5.01 4.80 0.00 3.27
1206 1285 1.506493 GCACGAATCTAGGCCATGAG 58.494 55.000 5.01 0.00 0.00 2.90
1236 1318 1.869767 GGCTCTGGATTGATTGCTACG 59.130 52.381 0.00 0.00 0.00 3.51
1237 1319 1.869767 CGGCTCTGGATTGATTGCTAC 59.130 52.381 0.00 0.00 0.00 3.58
1238 1320 1.486310 ACGGCTCTGGATTGATTGCTA 59.514 47.619 0.00 0.00 0.00 3.49
1250 1332 4.319839 GGAAAGAAGAAAGAAACGGCTCTG 60.320 45.833 0.00 0.00 0.00 3.35
1251 1333 3.815962 GGAAAGAAGAAAGAAACGGCTCT 59.184 43.478 0.00 0.00 0.00 4.09
1384 1478 1.823169 TAGAGCGACCAAAAGGCGGT 61.823 55.000 0.00 0.00 40.30 5.68
1476 1581 1.377463 ACCTGAGACCGAGACGAGG 60.377 63.158 0.00 0.00 0.00 4.63
1533 1638 2.411290 GCGGAAGAGAGAGGCGAG 59.589 66.667 0.00 0.00 0.00 5.03
1582 1697 3.591835 GCGGCTCTCCTCTCCTCG 61.592 72.222 0.00 0.00 0.00 4.63
1596 1714 3.767230 CACGACTCACAAGCGCGG 61.767 66.667 8.83 0.00 0.00 6.46
1598 1716 1.609840 GACTCACGACTCACAAGCGC 61.610 60.000 0.00 0.00 0.00 5.92
1608 1726 1.396644 GACAAGTCACGACTCACGAC 58.603 55.000 0.00 0.00 45.77 4.34
1612 1730 0.591659 CTCCGACAAGTCACGACTCA 59.408 55.000 0.00 0.00 41.58 3.41
1613 1731 0.729816 GCTCCGACAAGTCACGACTC 60.730 60.000 0.00 0.00 41.58 3.36
1614 1732 1.286260 GCTCCGACAAGTCACGACT 59.714 57.895 0.72 0.00 44.94 4.18
1615 1733 1.733399 GGCTCCGACAAGTCACGAC 60.733 63.158 0.72 0.00 0.00 4.34
1616 1734 2.142357 CTGGCTCCGACAAGTCACGA 62.142 60.000 0.72 0.00 0.00 4.35
1617 1735 1.734477 CTGGCTCCGACAAGTCACG 60.734 63.158 0.72 0.00 0.00 4.35
1618 1736 2.029844 GCTGGCTCCGACAAGTCAC 61.030 63.158 0.72 0.00 0.00 3.67
1619 1737 2.159819 GAGCTGGCTCCGACAAGTCA 62.160 60.000 11.14 0.00 37.11 3.41
1620 1738 1.446966 GAGCTGGCTCCGACAAGTC 60.447 63.158 11.14 0.00 37.11 3.01
1621 1739 2.659610 GAGCTGGCTCCGACAAGT 59.340 61.111 11.14 0.00 37.11 3.16
1652 1774 1.135859 CAGGCGACAAATCAAGACAGC 60.136 52.381 0.00 0.00 0.00 4.40
1655 1777 1.129437 GCTCAGGCGACAAATCAAGAC 59.871 52.381 0.00 0.00 0.00 3.01
1695 1825 2.107953 CCCTAGCAAGCTCGCTCC 59.892 66.667 0.19 0.00 42.62 4.70
1703 1833 1.745489 GTCAACCGCCCCTAGCAAG 60.745 63.158 0.00 0.00 44.04 4.01
1713 1843 0.315568 AGTGAGTGAGAGTCAACCGC 59.684 55.000 0.00 0.00 0.00 5.68
1717 1847 2.028658 GCCATGAGTGAGTGAGAGTCAA 60.029 50.000 0.00 0.00 0.00 3.18
1718 1848 1.547820 GCCATGAGTGAGTGAGAGTCA 59.452 52.381 0.00 0.00 0.00 3.41
1720 1850 0.529833 CGCCATGAGTGAGTGAGAGT 59.470 55.000 0.00 0.00 0.00 3.24
1721 1851 0.529833 ACGCCATGAGTGAGTGAGAG 59.470 55.000 0.00 0.00 0.00 3.20
1722 1852 0.244721 CACGCCATGAGTGAGTGAGA 59.755 55.000 13.73 0.00 41.83 3.27
1723 1853 0.738762 CCACGCCATGAGTGAGTGAG 60.739 60.000 18.67 2.73 41.83 3.51
1724 1854 1.184970 TCCACGCCATGAGTGAGTGA 61.185 55.000 18.67 8.14 41.83 3.41
1725 1855 0.738762 CTCCACGCCATGAGTGAGTG 60.739 60.000 18.67 9.37 41.83 3.51
1841 1974 1.344942 ATCGACGTCGCAAAGCAGAC 61.345 55.000 32.19 0.00 39.60 3.51
1843 1976 1.341802 GATCGACGTCGCAAAGCAG 59.658 57.895 32.19 4.71 39.60 4.24
1844 1977 2.092291 GGATCGACGTCGCAAAGCA 61.092 57.895 32.19 15.14 39.60 3.91
1845 1978 2.695646 GGATCGACGTCGCAAAGC 59.304 61.111 32.19 18.30 39.60 3.51
1846 1979 1.800315 ACGGATCGACGTCGCAAAG 60.800 57.895 32.19 23.38 45.08 2.77
1847 1980 2.256158 ACGGATCGACGTCGCAAA 59.744 55.556 32.19 16.72 45.08 3.68
1854 1987 3.756069 AGAAGAAACTAACGGATCGACG 58.244 45.455 0.00 0.00 40.31 5.12
1855 1988 5.400703 AGAAGAAGAAACTAACGGATCGAC 58.599 41.667 0.00 0.00 0.00 4.20
1856 1989 5.640189 AGAAGAAGAAACTAACGGATCGA 57.360 39.130 0.00 0.00 0.00 3.59
1857 1990 5.444745 GCAAGAAGAAGAAACTAACGGATCG 60.445 44.000 0.00 0.00 0.00 3.69
1858 1991 5.639931 AGCAAGAAGAAGAAACTAACGGATC 59.360 40.000 0.00 0.00 0.00 3.36
1859 1992 5.409826 CAGCAAGAAGAAGAAACTAACGGAT 59.590 40.000 0.00 0.00 0.00 4.18
1860 1993 4.750098 CAGCAAGAAGAAGAAACTAACGGA 59.250 41.667 0.00 0.00 0.00 4.69
1861 1994 4.611581 GCAGCAAGAAGAAGAAACTAACGG 60.612 45.833 0.00 0.00 0.00 4.44
1862 1995 4.212214 AGCAGCAAGAAGAAGAAACTAACG 59.788 41.667 0.00 0.00 0.00 3.18
1863 1996 5.334491 GGAGCAGCAAGAAGAAGAAACTAAC 60.334 44.000 0.00 0.00 0.00 2.34
1864 1997 4.757149 GGAGCAGCAAGAAGAAGAAACTAA 59.243 41.667 0.00 0.00 0.00 2.24
1865 1998 4.319177 GGAGCAGCAAGAAGAAGAAACTA 58.681 43.478 0.00 0.00 0.00 2.24
1866 1999 3.145286 GGAGCAGCAAGAAGAAGAAACT 58.855 45.455 0.00 0.00 0.00 2.66
1867 2000 2.227626 GGGAGCAGCAAGAAGAAGAAAC 59.772 50.000 0.00 0.00 0.00 2.78
1887 2020 2.679837 CAACAAGTATGTAGCAGGCAGG 59.320 50.000 0.00 0.00 39.40 4.85
1888 2021 3.599343 TCAACAAGTATGTAGCAGGCAG 58.401 45.455 0.00 0.00 39.40 4.85
1890 2023 4.191544 TGATCAACAAGTATGTAGCAGGC 58.808 43.478 0.00 0.00 39.40 4.85
1891 2024 5.468072 GGATGATCAACAAGTATGTAGCAGG 59.532 44.000 0.00 0.00 39.40 4.85
1892 2025 5.176406 CGGATGATCAACAAGTATGTAGCAG 59.824 44.000 0.00 0.00 39.40 4.24
1893 2026 5.049828 CGGATGATCAACAAGTATGTAGCA 58.950 41.667 0.00 0.00 39.40 3.49
1896 2029 6.465439 ACTCGGATGATCAACAAGTATGTA 57.535 37.500 0.00 0.00 39.40 2.29
1897 2030 5.344743 ACTCGGATGATCAACAAGTATGT 57.655 39.130 0.00 0.00 43.14 2.29
1898 2031 6.668541 AAACTCGGATGATCAACAAGTATG 57.331 37.500 0.00 0.00 0.00 2.39
1899 2032 6.878923 TGAAAACTCGGATGATCAACAAGTAT 59.121 34.615 0.00 0.00 0.00 2.12
1900 2033 6.227522 TGAAAACTCGGATGATCAACAAGTA 58.772 36.000 0.00 0.00 0.00 2.24
1904 2039 4.395854 CCATGAAAACTCGGATGATCAACA 59.604 41.667 0.00 0.00 0.00 3.33
1927 2062 2.384382 CACCACAAACGCAGACAAATC 58.616 47.619 0.00 0.00 0.00 2.17
1930 2065 1.999071 GCCACCACAAACGCAGACAA 61.999 55.000 0.00 0.00 0.00 3.18
1934 2069 2.332514 CTGCCACCACAAACGCAG 59.667 61.111 0.00 0.00 42.42 5.18
1937 2072 1.525995 AGACCTGCCACCACAAACG 60.526 57.895 0.00 0.00 0.00 3.60
1948 2083 4.767255 CTGCCCGTCCAGACCTGC 62.767 72.222 0.00 0.00 34.77 4.85
1954 2089 4.135153 CGACTCCTGCCCGTCCAG 62.135 72.222 0.00 0.00 0.00 3.86
2008 2143 3.502572 GCCGTTGCTTCCTCCATC 58.497 61.111 0.00 0.00 33.53 3.51
2040 2175 6.686679 GCAACTGTGAAAATAAAGTTTTTGCC 59.313 34.615 0.00 0.00 30.59 4.52
2052 2187 2.098934 TCAACGCTGCAACTGTGAAAAT 59.901 40.909 0.00 0.00 0.00 1.82
2059 2194 1.150827 TCAGATCAACGCTGCAACTG 58.849 50.000 0.00 0.00 33.45 3.16
2060 2195 1.736126 CATCAGATCAACGCTGCAACT 59.264 47.619 0.00 0.00 33.45 3.16
2079 2214 6.750501 CGAAGTATAAAAGAACAGGACGATCA 59.249 38.462 0.00 0.00 0.00 2.92
2080 2215 6.750963 ACGAAGTATAAAAGAACAGGACGATC 59.249 38.462 0.00 0.00 41.94 3.69
2081 2216 6.628185 ACGAAGTATAAAAGAACAGGACGAT 58.372 36.000 0.00 0.00 41.94 3.73
2090 2225 8.508784 CACGTACGTGGACGAAGTATAAAAGAA 61.509 40.741 35.09 0.00 45.82 2.52
2092 2227 5.002840 CACGTACGTGGACGAAGTATAAAAG 59.997 44.000 35.09 8.14 45.82 2.27
2099 2252 1.370900 GCACGTACGTGGACGAAGT 60.371 57.895 40.17 6.97 45.82 3.01
2342 2540 4.988716 ACGGTGGCGGAGAGGTCA 62.989 66.667 0.00 0.00 0.00 4.02
2394 2592 3.620427 TGGTGTGTGTGGGTATGTATC 57.380 47.619 0.00 0.00 0.00 2.24
2396 2594 2.616765 GCATGGTGTGTGTGGGTATGTA 60.617 50.000 0.00 0.00 0.00 2.29
2397 2595 1.886222 GCATGGTGTGTGTGGGTATGT 60.886 52.381 0.00 0.00 0.00 2.29
2399 2597 0.403655 TGCATGGTGTGTGTGGGTAT 59.596 50.000 0.00 0.00 0.00 2.73
2400 2598 0.403655 ATGCATGGTGTGTGTGGGTA 59.596 50.000 0.00 0.00 0.00 3.69
2403 2601 1.133598 GATGATGCATGGTGTGTGTGG 59.866 52.381 2.46 0.00 0.00 4.17
2456 2659 3.455328 CTGGCATGAGTGAGACCAG 57.545 57.895 0.00 0.00 41.78 4.00
2472 2675 1.656441 GCACAGGCAGGAAACACTG 59.344 57.895 0.00 0.00 40.72 3.66
2620 2837 7.547370 AGAATCAGCATAGTTACAACTTGTCTC 59.453 37.037 0.00 0.00 40.37 3.36
2621 2838 7.332926 CAGAATCAGCATAGTTACAACTTGTCT 59.667 37.037 0.00 0.00 40.37 3.41
2631 2848 7.708322 GTCAGTTCATCAGAATCAGCATAGTTA 59.292 37.037 0.00 0.00 35.92 2.24
2643 2864 5.541845 ACGAGATTTGTCAGTTCATCAGAA 58.458 37.500 0.00 0.00 0.00 3.02
2657 2878 0.179240 GCGTGCACAGACGAGATTTG 60.179 55.000 18.64 0.00 42.10 2.32
2658 2879 1.617755 CGCGTGCACAGACGAGATTT 61.618 55.000 18.64 0.00 41.08 2.17
2661 2882 3.961197 ACGCGTGCACAGACGAGA 61.961 61.111 25.00 0.00 41.08 4.04
2698 2927 4.140599 CCTCGCAGCCTCTTCGCT 62.141 66.667 0.00 0.00 40.65 4.93
2719 2948 2.185608 GGCAGGTCGGAGCTCTTC 59.814 66.667 14.64 4.34 0.00 2.87
2737 2966 0.107116 AGATACTCACCGACGAGGCT 60.107 55.000 0.00 0.00 46.52 4.58
2758 2987 2.797156 CGCAGGATTCAGACTTATTCCG 59.203 50.000 0.00 0.00 0.00 4.30
2766 2995 1.863454 CATAGTGCGCAGGATTCAGAC 59.137 52.381 12.22 0.00 0.00 3.51
2803 3032 3.745975 CGATTTGGTTCAGTTAGTGCTGA 59.254 43.478 0.00 0.00 43.03 4.26
2809 3038 5.463724 GGAGATAGCGATTTGGTTCAGTTAG 59.536 44.000 0.00 0.00 0.00 2.34
2892 3121 5.505159 CGTCACAGACACGGCTCTAATTATA 60.505 44.000 0.00 0.00 33.46 0.98
2893 3122 4.683832 GTCACAGACACGGCTCTAATTAT 58.316 43.478 0.00 0.00 32.09 1.28
2894 3123 3.427098 CGTCACAGACACGGCTCTAATTA 60.427 47.826 0.00 0.00 33.46 1.40
2895 3124 2.671351 CGTCACAGACACGGCTCTAATT 60.671 50.000 0.00 0.00 33.46 1.40
2896 3125 1.135373 CGTCACAGACACGGCTCTAAT 60.135 52.381 0.00 0.00 33.46 1.73
2897 3126 0.240145 CGTCACAGACACGGCTCTAA 59.760 55.000 0.00 0.00 33.46 2.10
2898 3127 0.604511 TCGTCACAGACACGGCTCTA 60.605 55.000 0.00 0.00 37.85 2.43
2899 3128 1.857318 CTCGTCACAGACACGGCTCT 61.857 60.000 0.00 0.00 37.85 4.09
2902 3131 2.430921 CCTCGTCACAGACACGGC 60.431 66.667 0.00 0.00 37.85 5.68
2903 3132 2.083835 AACCCTCGTCACAGACACGG 62.084 60.000 0.00 0.00 37.85 4.94
2906 3135 2.232941 GGATTAACCCTCGTCACAGACA 59.767 50.000 0.00 0.00 32.09 3.41
2907 3136 2.496470 AGGATTAACCCTCGTCACAGAC 59.504 50.000 0.00 0.00 40.05 3.51
2908 3137 2.496070 CAGGATTAACCCTCGTCACAGA 59.504 50.000 0.00 0.00 40.05 3.41
2909 3138 2.233922 ACAGGATTAACCCTCGTCACAG 59.766 50.000 0.00 0.00 40.05 3.66
2910 3139 2.253610 ACAGGATTAACCCTCGTCACA 58.746 47.619 0.00 0.00 40.05 3.58
2912 3141 4.069304 CAAAACAGGATTAACCCTCGTCA 58.931 43.478 0.00 0.00 40.05 4.35
2913 3142 3.119955 GCAAAACAGGATTAACCCTCGTC 60.120 47.826 0.00 0.00 40.05 4.20
2914 3143 2.817844 GCAAAACAGGATTAACCCTCGT 59.182 45.455 0.00 0.00 40.05 4.18
2915 3144 3.081804 AGCAAAACAGGATTAACCCTCG 58.918 45.455 0.00 0.00 40.05 4.63
2917 3146 5.256806 AGTAGCAAAACAGGATTAACCCT 57.743 39.130 0.00 0.00 40.05 4.34
2919 3148 5.640783 ACGTAGTAGCAAAACAGGATTAACC 59.359 40.000 0.00 0.00 41.94 2.85
2920 3149 6.716898 ACGTAGTAGCAAAACAGGATTAAC 57.283 37.500 0.00 0.00 41.94 2.01
2976 3232 4.683832 GTCACAGACACGGCTCTAATTAT 58.316 43.478 0.00 0.00 32.09 1.28
3002 3261 1.050421 ATGGCCCCCAAAATAGCAGC 61.050 55.000 0.00 0.00 36.95 5.25
3047 3307 5.583854 ACGAACGCATCTAGTTAGAAGTAGA 59.416 40.000 8.84 8.84 43.13 2.59
3052 3312 3.486375 CCGACGAACGCATCTAGTTAGAA 60.486 47.826 0.00 0.00 41.07 2.10
3109 3370 8.822855 CGAAGTATTTGTGCAATTATACCACTA 58.177 33.333 0.00 0.00 0.00 2.74
3110 3371 7.335924 ACGAAGTATTTGTGCAATTATACCACT 59.664 33.333 0.00 0.00 42.26 4.00
3111 3372 7.469260 ACGAAGTATTTGTGCAATTATACCAC 58.531 34.615 0.00 0.00 42.26 4.16
3135 3396 2.350772 CCGGCAAAGATCAAGTTCACAC 60.351 50.000 0.00 0.00 0.00 3.82
3136 3397 1.879380 CCGGCAAAGATCAAGTTCACA 59.121 47.619 0.00 0.00 0.00 3.58
3137 3398 1.880027 ACCGGCAAAGATCAAGTTCAC 59.120 47.619 0.00 0.00 0.00 3.18
3167 3428 1.595382 ACTGTTCGAGCAGCACCAC 60.595 57.895 26.79 0.67 39.96 4.16
3182 3451 2.051334 TTGGACCTGAACCAACACTG 57.949 50.000 0.00 0.00 41.64 3.66
3202 3471 6.549736 TGGTCCTATACATCGATCAGAAGAAA 59.450 38.462 0.00 0.00 0.00 2.52
3254 3523 9.408648 TCAGGGGTAATCATCTTTCTAAAAATC 57.591 33.333 0.00 0.00 0.00 2.17
3255 3524 9.190317 GTCAGGGGTAATCATCTTTCTAAAAAT 57.810 33.333 0.00 0.00 0.00 1.82
3268 3539 5.305386 CAGATACAGATGTCAGGGGTAATCA 59.695 44.000 0.00 0.00 0.00 2.57
3282 3553 3.744942 GCATGCATCGTTCAGATACAGAT 59.255 43.478 14.21 0.00 36.18 2.90
3293 3564 3.788333 AAAATAGCTGCATGCATCGTT 57.212 38.095 22.97 14.33 45.94 3.85
3344 3616 5.683509 GCTGGCTTCAGACTACTTGATGTAT 60.684 44.000 0.00 0.00 40.86 2.29
3352 3624 2.465813 AGATGCTGGCTTCAGACTACT 58.534 47.619 10.32 0.00 40.86 2.57
3367 3639 2.348591 GCGACGGTTATTGCTAAGATGC 60.349 50.000 0.00 0.00 0.00 3.91
3379 3651 3.753272 GTGGATAGGTATAGCGACGGTTA 59.247 47.826 4.26 0.00 0.00 2.85
3383 3655 2.161808 CAGGTGGATAGGTATAGCGACG 59.838 54.545 0.00 0.00 27.84 5.12
3391 3663 4.078571 ACTCCTTCATCAGGTGGATAGGTA 60.079 45.833 0.00 0.00 44.37 3.08
3392 3664 3.310954 ACTCCTTCATCAGGTGGATAGGT 60.311 47.826 0.00 0.00 44.37 3.08
3452 3724 7.229306 CCTCTGCATTTAGATGTTAGGCATTTA 59.771 37.037 0.00 0.00 38.06 1.40
3471 3746 3.506743 TTGGTTGGGGCCTCTGCA 61.507 61.111 3.07 0.00 40.13 4.41
3490 3765 0.896479 GCCCCAAACCCAATACGTGT 60.896 55.000 0.00 0.00 0.00 4.49
3494 3769 1.343069 TTGTGCCCCAAACCCAATAC 58.657 50.000 0.00 0.00 0.00 1.89
3497 3772 4.480480 TTTGTGCCCCAAACCCAA 57.520 50.000 0.00 0.00 38.12 4.12
3551 3826 4.070716 GCTCTGAATATGGATTGGTGGAG 58.929 47.826 0.00 0.00 0.00 3.86
3565 3840 4.397417 GGTGCATTAGTTTCTGCTCTGAAT 59.603 41.667 0.00 0.00 39.16 2.57
3628 3904 0.615331 GCAGGAGGATGTTGTCTGGA 59.385 55.000 0.00 0.00 0.00 3.86
3675 3954 2.360726 TAGCGCCGTGGAGACTCA 60.361 61.111 2.29 0.00 0.00 3.41
3726 4005 1.815003 CTTTGATGGGAGGTGCTTCAC 59.185 52.381 0.00 0.00 0.00 3.18
3736 4015 2.028112 CAGGACGACTTCTTTGATGGGA 60.028 50.000 0.00 0.00 0.00 4.37
3741 4021 1.760613 ACCACAGGACGACTTCTTTGA 59.239 47.619 0.00 0.00 0.00 2.69
3770 4050 1.933021 ATCTTGGAGGTACACACGGA 58.067 50.000 0.00 0.00 0.00 4.69
3810 4090 0.973632 ACAACGGTGCTCTGGTATCA 59.026 50.000 0.00 0.00 0.00 2.15
3813 4093 0.973632 ATGACAACGGTGCTCTGGTA 59.026 50.000 0.00 0.00 0.00 3.25
3822 4102 1.407979 GGTAGATCGGATGACAACGGT 59.592 52.381 0.00 0.00 0.00 4.83
3826 4106 3.917329 GATCGGTAGATCGGATGACAA 57.083 47.619 0.00 0.00 43.17 3.18
3858 4138 0.681564 CCACTCTCTGCTACCTCCGT 60.682 60.000 0.00 0.00 0.00 4.69
3890 4170 0.601057 TCTTGAAGACATCGCCGTGA 59.399 50.000 0.00 0.00 0.00 4.35
3964 4244 7.608153 TCTTCGAACATATCTAGGTGAAAACA 58.392 34.615 0.00 0.00 0.00 2.83
3974 4254 8.239038 AGATGGAGTTTCTTCGAACATATCTA 57.761 34.615 0.00 0.00 30.80 1.98
4082 4362 2.129146 TGGTGTCGTCGGGTCTTGT 61.129 57.895 0.00 0.00 0.00 3.16
4084 4364 2.732658 GTGGTGTCGTCGGGTCTT 59.267 61.111 0.00 0.00 0.00 3.01
4106 4386 3.200593 GAGCCGATGCAGCCTGTG 61.201 66.667 0.00 0.00 41.13 3.66
4127 4407 1.596934 GAATCTGGGTGGTGCTCGA 59.403 57.895 0.00 0.00 0.00 4.04
4235 4520 1.784525 CGACTCTTTGAAGCTTCGGT 58.215 50.000 21.11 13.65 0.00 4.69
4239 4524 1.569479 GGCGCGACTCTTTGAAGCTT 61.569 55.000 12.10 0.00 0.00 3.74
4246 4531 1.961277 CTTGGTGGCGCGACTCTTT 60.961 57.895 22.08 0.00 0.00 2.52
4271 4556 2.976840 GCGGCGCAATTGTTCCTGA 61.977 57.895 29.21 0.00 0.00 3.86
4273 4558 3.747976 GGCGGCGCAATTGTTCCT 61.748 61.111 34.36 0.00 0.00 3.36
4291 4576 1.518302 GTTCTCCCTCCTTCCTCGC 59.482 63.158 0.00 0.00 0.00 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.