Multiple sequence alignment - TraesCS3A01G108300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G108300 chr3A 100.000 3245 0 0 1 3245 73875320 73872076 0.000000e+00 5993.0
1 TraesCS3A01G108300 chr3A 96.732 612 19 1 1 611 38157067 38157678 0.000000e+00 1018.0
2 TraesCS3A01G108300 chr3A 96.569 612 20 1 1 611 2735921 2736532 0.000000e+00 1013.0
3 TraesCS3A01G108300 chr3A 85.366 82 9 3 2305 2385 723379037 723378958 7.460000e-12 82.4
4 TraesCS3A01G108300 chr3D 92.715 1606 74 14 681 2274 64111386 64109812 0.000000e+00 2278.0
5 TraesCS3A01G108300 chr3D 86.047 344 39 4 2907 3241 64109676 64109333 8.560000e-96 361.0
6 TraesCS3A01G108300 chr3B 91.696 1445 96 8 773 2208 105463344 105461915 0.000000e+00 1982.0
7 TraesCS3A01G108300 chr3B 85.882 85 8 4 2302 2385 141604448 141604367 1.600000e-13 87.9
8 TraesCS3A01G108300 chr7A 96.591 616 20 1 1 615 671344908 671345523 0.000000e+00 1020.0
9 TraesCS3A01G108300 chr7A 96.423 615 21 1 1 614 731167498 731166884 0.000000e+00 1013.0
10 TraesCS3A01G108300 chr7A 91.579 190 7 6 2276 2464 36334971 36335152 1.490000e-63 254.0
11 TraesCS3A01G108300 chr7A 79.679 187 24 11 2277 2460 567691068 567690893 4.400000e-24 122.0
12 TraesCS3A01G108300 chr2A 96.732 612 19 1 1 611 737334698 737335309 0.000000e+00 1018.0
13 TraesCS3A01G108300 chr2A 96.429 616 21 1 1 615 772793812 772793197 0.000000e+00 1014.0
14 TraesCS3A01G108300 chr2A 86.777 121 8 4 1351 1463 81064529 81064649 9.450000e-26 128.0
15 TraesCS3A01G108300 chr5A 96.580 614 17 3 1 611 426345251 426345863 0.000000e+00 1014.0
16 TraesCS3A01G108300 chr5A 84.270 89 11 3 2299 2385 30628520 30628433 2.070000e-12 84.2
17 TraesCS3A01G108300 chr5A 93.103 58 3 1 2645 2702 520703329 520703385 2.070000e-12 84.2
18 TraesCS3A01G108300 chr6A 96.423 615 21 1 1 614 536710583 536709969 0.000000e+00 1013.0
19 TraesCS3A01G108300 chr6A 84.706 85 9 4 2302 2385 36247274 36247193 7.460000e-12 82.4
20 TraesCS3A01G108300 chr4A 96.569 612 20 1 1 611 519092286 519091675 0.000000e+00 1013.0
21 TraesCS3A01G108300 chr2B 88.889 801 86 3 1308 2105 110490216 110491016 0.000000e+00 983.0
22 TraesCS3A01G108300 chr2B 76.697 781 154 20 1313 2079 111041575 111040809 3.010000e-110 409.0
23 TraesCS3A01G108300 chr2B 85.057 87 12 1 2299 2385 94220169 94220254 1.600000e-13 87.9
24 TraesCS3A01G108300 chr2D 79.144 748 143 13 1337 2079 136438333 136437594 3.740000e-139 505.0
25 TraesCS3A01G108300 chr2D 76.245 783 154 29 1313 2079 73268680 73269446 1.410000e-103 387.0
26 TraesCS3A01G108300 chr1B 92.063 189 5 4 2278 2465 364811984 364812163 1.160000e-64 257.0
27 TraesCS3A01G108300 chr6B 91.339 127 11 0 1347 1473 654618271 654618397 1.200000e-39 174.0
28 TraesCS3A01G108300 chr5B 96.970 66 2 0 2400 2465 420011679 420011614 9.520000e-21 111.0
29 TraesCS3A01G108300 chr1D 82.292 96 13 3 2277 2371 493035848 493035940 2.680000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G108300 chr3A 73872076 73875320 3244 True 5993.0 5993 100.000 1 3245 1 chr3A.!!$R1 3244
1 TraesCS3A01G108300 chr3A 38157067 38157678 611 False 1018.0 1018 96.732 1 611 1 chr3A.!!$F2 610
2 TraesCS3A01G108300 chr3A 2735921 2736532 611 False 1013.0 1013 96.569 1 611 1 chr3A.!!$F1 610
3 TraesCS3A01G108300 chr3D 64109333 64111386 2053 True 1319.5 2278 89.381 681 3241 2 chr3D.!!$R1 2560
4 TraesCS3A01G108300 chr3B 105461915 105463344 1429 True 1982.0 1982 91.696 773 2208 1 chr3B.!!$R1 1435
5 TraesCS3A01G108300 chr7A 671344908 671345523 615 False 1020.0 1020 96.591 1 615 1 chr7A.!!$F2 614
6 TraesCS3A01G108300 chr7A 731166884 731167498 614 True 1013.0 1013 96.423 1 614 1 chr7A.!!$R2 613
7 TraesCS3A01G108300 chr2A 737334698 737335309 611 False 1018.0 1018 96.732 1 611 1 chr2A.!!$F2 610
8 TraesCS3A01G108300 chr2A 772793197 772793812 615 True 1014.0 1014 96.429 1 615 1 chr2A.!!$R1 614
9 TraesCS3A01G108300 chr5A 426345251 426345863 612 False 1014.0 1014 96.580 1 611 1 chr5A.!!$F1 610
10 TraesCS3A01G108300 chr6A 536709969 536710583 614 True 1013.0 1013 96.423 1 614 1 chr6A.!!$R2 613
11 TraesCS3A01G108300 chr4A 519091675 519092286 611 True 1013.0 1013 96.569 1 611 1 chr4A.!!$R1 610
12 TraesCS3A01G108300 chr2B 110490216 110491016 800 False 983.0 983 88.889 1308 2105 1 chr2B.!!$F2 797
13 TraesCS3A01G108300 chr2B 111040809 111041575 766 True 409.0 409 76.697 1313 2079 1 chr2B.!!$R1 766
14 TraesCS3A01G108300 chr2D 136437594 136438333 739 True 505.0 505 79.144 1337 2079 1 chr2D.!!$R1 742
15 TraesCS3A01G108300 chr2D 73268680 73269446 766 False 387.0 387 76.245 1313 2079 1 chr2D.!!$F1 766

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
936 941 0.179004 TTTTCCAAAGCAGGCGAGGA 60.179 50.0 0.0 0.0 0.0 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2734 2761 0.042131 TCCACGGGTATGACTTCCCT 59.958 55.0 0.0 0.0 41.4 4.2 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
244 246 1.138661 GAGCTAGAGCACCATCAAGCT 59.861 52.381 4.01 0.00 45.16 3.74
336 340 1.553248 CCTCATTGGTCTCGGTTGGTA 59.447 52.381 0.00 0.00 0.00 3.25
391 395 1.527380 GTTCAAGCCACCAACCGGA 60.527 57.895 9.46 0.00 35.59 5.14
430 434 3.499737 GCGAGGCACATTGGTCCG 61.500 66.667 0.00 0.00 0.00 4.79
564 568 0.613777 GTTCTGGACTGAACCGGGAT 59.386 55.000 6.32 0.00 40.10 3.85
615 619 4.683671 GCCCTGTTTTCTACTAGTGGATCC 60.684 50.000 10.02 4.20 0.00 3.36
616 620 4.469945 CCCTGTTTTCTACTAGTGGATCCA 59.530 45.833 11.44 11.44 0.00 3.41
617 621 5.395768 CCCTGTTTTCTACTAGTGGATCCAG 60.396 48.000 16.81 14.29 0.00 3.86
618 622 5.187967 CCTGTTTTCTACTAGTGGATCCAGT 59.812 44.000 25.26 25.26 0.00 4.00
619 623 6.282199 TGTTTTCTACTAGTGGATCCAGTC 57.718 41.667 25.66 9.92 0.00 3.51
620 624 5.105877 TGTTTTCTACTAGTGGATCCAGTCG 60.106 44.000 25.66 21.15 0.00 4.18
621 625 2.573369 TCTACTAGTGGATCCAGTCGC 58.427 52.381 25.66 8.73 0.00 5.19
622 626 2.092592 TCTACTAGTGGATCCAGTCGCA 60.093 50.000 25.66 9.52 0.00 5.10
623 627 1.781786 ACTAGTGGATCCAGTCGCAT 58.218 50.000 25.66 7.13 0.00 4.73
624 628 2.111384 ACTAGTGGATCCAGTCGCATT 58.889 47.619 25.66 1.14 0.00 3.56
625 629 2.101582 ACTAGTGGATCCAGTCGCATTC 59.898 50.000 25.66 5.97 0.00 2.67
626 630 0.179100 AGTGGATCCAGTCGCATTCG 60.179 55.000 16.81 0.00 0.00 3.34
627 631 1.521457 TGGATCCAGTCGCATTCGC 60.521 57.895 11.44 0.00 35.26 4.70
628 632 1.521457 GGATCCAGTCGCATTCGCA 60.521 57.895 6.95 0.00 38.40 5.10
629 633 1.493950 GGATCCAGTCGCATTCGCAG 61.494 60.000 6.95 0.00 38.40 5.18
630 634 0.807667 GATCCAGTCGCATTCGCAGT 60.808 55.000 0.00 0.00 38.40 4.40
631 635 0.459899 ATCCAGTCGCATTCGCAGTA 59.540 50.000 0.00 0.00 38.40 2.74
632 636 0.457853 TCCAGTCGCATTCGCAGTAC 60.458 55.000 0.00 0.00 38.40 2.73
633 637 0.458543 CCAGTCGCATTCGCAGTACT 60.459 55.000 0.00 0.00 38.40 2.73
634 638 0.917259 CAGTCGCATTCGCAGTACTC 59.083 55.000 0.00 0.00 38.40 2.59
635 639 0.811915 AGTCGCATTCGCAGTACTCT 59.188 50.000 0.00 0.00 38.40 3.24
636 640 2.014857 AGTCGCATTCGCAGTACTCTA 58.985 47.619 0.00 0.00 38.40 2.43
637 641 2.619177 AGTCGCATTCGCAGTACTCTAT 59.381 45.455 0.00 0.00 38.40 1.98
638 642 3.813724 AGTCGCATTCGCAGTACTCTATA 59.186 43.478 0.00 0.00 38.40 1.31
639 643 3.907194 GTCGCATTCGCAGTACTCTATAC 59.093 47.826 0.00 0.00 38.40 1.47
640 644 3.058432 TCGCATTCGCAGTACTCTATACC 60.058 47.826 0.00 0.00 38.40 2.73
641 645 3.235195 GCATTCGCAGTACTCTATACCG 58.765 50.000 0.00 0.00 38.36 4.02
642 646 3.822996 CATTCGCAGTACTCTATACCGG 58.177 50.000 0.00 0.00 0.00 5.28
643 647 1.233019 TCGCAGTACTCTATACCGGC 58.767 55.000 0.00 0.00 0.00 6.13
644 648 0.949397 CGCAGTACTCTATACCGGCA 59.051 55.000 0.00 0.00 0.00 5.69
645 649 1.069159 CGCAGTACTCTATACCGGCAG 60.069 57.143 0.00 0.00 0.00 4.85
646 650 1.336056 GCAGTACTCTATACCGGCAGC 60.336 57.143 0.00 0.00 0.00 5.25
647 651 1.954382 CAGTACTCTATACCGGCAGCA 59.046 52.381 0.00 0.00 0.00 4.41
648 652 2.361119 CAGTACTCTATACCGGCAGCAA 59.639 50.000 0.00 0.00 0.00 3.91
649 653 2.361438 AGTACTCTATACCGGCAGCAAC 59.639 50.000 0.00 0.00 0.00 4.17
650 654 1.191535 ACTCTATACCGGCAGCAACA 58.808 50.000 0.00 0.00 0.00 3.33
651 655 1.137086 ACTCTATACCGGCAGCAACAG 59.863 52.381 0.00 0.00 0.00 3.16
652 656 1.409064 CTCTATACCGGCAGCAACAGA 59.591 52.381 0.00 0.00 0.00 3.41
653 657 2.036475 CTCTATACCGGCAGCAACAGAT 59.964 50.000 0.00 0.00 0.00 2.90
654 658 2.434336 TCTATACCGGCAGCAACAGATT 59.566 45.455 0.00 0.00 0.00 2.40
655 659 1.382522 ATACCGGCAGCAACAGATTG 58.617 50.000 0.00 0.00 38.99 2.67
656 660 0.676466 TACCGGCAGCAACAGATTGG 60.676 55.000 0.00 0.00 36.23 3.16
662 666 3.444850 AGCAACAGATTGGTGGCTT 57.555 47.368 0.00 0.00 45.76 4.35
663 667 1.251251 AGCAACAGATTGGTGGCTTC 58.749 50.000 0.00 0.00 45.76 3.86
664 668 0.244721 GCAACAGATTGGTGGCTTCC 59.755 55.000 0.00 0.00 35.13 3.46
665 669 0.890683 CAACAGATTGGTGGCTTCCC 59.109 55.000 0.00 0.00 29.70 3.97
666 670 0.482446 AACAGATTGGTGGCTTCCCA 59.518 50.000 0.00 0.00 39.32 4.37
667 671 0.706433 ACAGATTGGTGGCTTCCCAT 59.294 50.000 0.00 0.00 44.51 4.00
668 672 1.341383 ACAGATTGGTGGCTTCCCATC 60.341 52.381 5.65 5.65 44.51 3.51
669 673 1.064166 CAGATTGGTGGCTTCCCATCT 60.064 52.381 8.99 8.99 43.05 2.90
670 674 1.642762 AGATTGGTGGCTTCCCATCTT 59.357 47.619 8.99 0.00 43.05 2.40
671 675 2.043526 AGATTGGTGGCTTCCCATCTTT 59.956 45.455 8.99 0.00 43.05 2.52
672 676 1.631405 TTGGTGGCTTCCCATCTTTG 58.369 50.000 0.00 0.00 43.05 2.77
673 677 0.482446 TGGTGGCTTCCCATCTTTGT 59.518 50.000 0.00 0.00 43.05 2.83
674 678 0.890683 GGTGGCTTCCCATCTTTGTG 59.109 55.000 0.00 0.00 44.51 3.33
675 679 1.547675 GGTGGCTTCCCATCTTTGTGA 60.548 52.381 0.00 0.00 44.51 3.58
676 680 2.450476 GTGGCTTCCCATCTTTGTGAT 58.550 47.619 0.00 0.00 44.51 3.06
701 705 6.881065 TGTGCATAAAACTCTCTTCTGCTTAT 59.119 34.615 0.00 0.00 0.00 1.73
702 706 8.040727 TGTGCATAAAACTCTCTTCTGCTTATA 58.959 33.333 0.00 0.00 0.00 0.98
734 738 9.820229 CAAAATACGACAAAGCTTAATTAGTGA 57.180 29.630 0.00 0.00 0.00 3.41
762 766 2.329267 ACGATGGCTAAGATGGATGGA 58.671 47.619 0.00 0.00 0.00 3.41
790 794 1.710339 GGCTGAGATTGTTCGTCGC 59.290 57.895 0.00 0.00 0.00 5.19
807 812 2.520754 GTCGCACAAAAATCGTAATCGC 59.479 45.455 0.00 0.00 36.96 4.58
825 830 1.518133 CACCTGTAGCAGCGCTCTC 60.518 63.158 7.13 1.64 40.44 3.20
826 831 2.278466 CCTGTAGCAGCGCTCTCG 60.278 66.667 7.13 0.00 40.44 4.04
843 848 1.947456 CTCGACATGTGATCTACCCGA 59.053 52.381 1.15 2.10 0.00 5.14
844 849 1.947456 TCGACATGTGATCTACCCGAG 59.053 52.381 1.15 0.00 0.00 4.63
845 850 1.947456 CGACATGTGATCTACCCGAGA 59.053 52.381 1.15 0.00 39.01 4.04
847 852 3.004839 CGACATGTGATCTACCCGAGATT 59.995 47.826 1.15 0.00 45.48 2.40
891 896 1.503818 AAACACGCGGCGACAAAGAT 61.504 50.000 30.94 0.52 0.00 2.40
929 934 5.243730 TCCTGGTTAGATTTTTCCAAAGCAG 59.756 40.000 5.77 5.77 42.42 4.24
936 941 0.179004 TTTTCCAAAGCAGGCGAGGA 60.179 50.000 0.00 0.00 0.00 3.71
940 945 1.023513 CCAAAGCAGGCGAGGAGAAG 61.024 60.000 0.00 0.00 0.00 2.85
985 990 3.312697 ACGAAAAGACCAAGAACTCAAGC 59.687 43.478 0.00 0.00 0.00 4.01
1048 1053 0.957395 CAGCCTTCGTCACTGCCAAT 60.957 55.000 0.00 0.00 0.00 3.16
1052 1057 1.393539 CCTTCGTCACTGCCAATTACG 59.606 52.381 0.00 0.00 34.99 3.18
1053 1058 1.393539 CTTCGTCACTGCCAATTACGG 59.606 52.381 0.00 0.00 34.47 4.02
1097 1111 2.260869 TTCAAAGCCGTGCAGCTCC 61.261 57.895 0.32 0.00 44.11 4.70
1123 1137 0.603569 GGGAGACGAGCAGAGTTCAA 59.396 55.000 0.00 0.00 0.00 2.69
1126 1140 1.271102 GAGACGAGCAGAGTTCAAGGT 59.729 52.381 0.00 0.00 0.00 3.50
1129 1143 2.476997 GACGAGCAGAGTTCAAGGTTTC 59.523 50.000 0.00 0.00 0.00 2.78
1132 1146 3.206150 GAGCAGAGTTCAAGGTTTCACA 58.794 45.455 0.00 0.00 0.00 3.58
1168 1182 4.475135 GGCTTCTCCACGGCTCCC 62.475 72.222 0.00 0.00 34.01 4.30
1186 1200 2.368875 TCCCAACTCTCAGAGGTTTGTC 59.631 50.000 6.64 0.00 33.35 3.18
1187 1201 2.370189 CCCAACTCTCAGAGGTTTGTCT 59.630 50.000 6.64 0.00 33.35 3.41
1188 1202 3.578716 CCCAACTCTCAGAGGTTTGTCTA 59.421 47.826 6.64 0.00 33.35 2.59
1189 1203 4.223923 CCCAACTCTCAGAGGTTTGTCTAT 59.776 45.833 6.64 0.00 33.35 1.98
1190 1204 5.422331 CCCAACTCTCAGAGGTTTGTCTATA 59.578 44.000 6.64 0.00 33.35 1.31
1227 1241 2.770802 AGTCTCTCAATGCTGCTGGTAT 59.229 45.455 0.00 0.00 0.00 2.73
1228 1242 3.129871 GTCTCTCAATGCTGCTGGTATC 58.870 50.000 0.00 0.00 0.00 2.24
1229 1243 2.133553 CTCTCAATGCTGCTGGTATCG 58.866 52.381 0.00 0.00 0.00 2.92
1230 1244 1.482182 TCTCAATGCTGCTGGTATCGT 59.518 47.619 0.00 0.00 0.00 3.73
1231 1245 2.693074 TCTCAATGCTGCTGGTATCGTA 59.307 45.455 0.00 0.00 0.00 3.43
1250 1264 3.281751 CTCTCCGTTGTTGCGCACG 62.282 63.158 11.12 10.92 0.00 5.34
1277 1292 4.615223 CGTGGACTTCGAGTGTCTTATCAA 60.615 45.833 16.49 0.00 35.04 2.57
1293 1308 5.521372 TCTTATCAACTTCTGCGTCATGATG 59.479 40.000 10.76 10.76 0.00 3.07
1303 1318 1.717937 GTCATGATGTGCTGCCGAC 59.282 57.895 0.00 0.00 0.00 4.79
1304 1319 1.810853 TCATGATGTGCTGCCGACG 60.811 57.895 0.00 0.00 0.00 5.12
1333 1351 1.078708 TTAGCTGGTAAGGTGGCGC 60.079 57.895 0.00 0.00 35.29 6.53
1575 1599 1.520564 CTACAGCAACGCCGGCATA 60.521 57.895 28.98 5.46 0.00 3.14
2142 2169 1.524482 GAGGGATCAGTGAGTGCCC 59.476 63.158 16.82 16.82 39.12 5.36
2210 2237 1.804748 GTGTTCCACACCTCGATTTCC 59.195 52.381 0.00 0.00 43.05 3.13
2212 2239 2.039746 TGTTCCACACCTCGATTTCCAT 59.960 45.455 0.00 0.00 0.00 3.41
2214 2241 2.187958 TCCACACCTCGATTTCCATCT 58.812 47.619 0.00 0.00 0.00 2.90
2215 2242 2.093500 TCCACACCTCGATTTCCATCTG 60.093 50.000 0.00 0.00 0.00 2.90
2216 2243 2.355108 CCACACCTCGATTTCCATCTGT 60.355 50.000 0.00 0.00 0.00 3.41
2217 2244 3.338249 CACACCTCGATTTCCATCTGTT 58.662 45.455 0.00 0.00 0.00 3.16
2218 2245 4.503910 CACACCTCGATTTCCATCTGTTA 58.496 43.478 0.00 0.00 0.00 2.41
2219 2246 4.935205 CACACCTCGATTTCCATCTGTTAA 59.065 41.667 0.00 0.00 0.00 2.01
2220 2247 5.411361 CACACCTCGATTTCCATCTGTTAAA 59.589 40.000 0.00 0.00 0.00 1.52
2221 2248 5.411669 ACACCTCGATTTCCATCTGTTAAAC 59.588 40.000 0.00 0.00 0.00 2.01
2222 2249 5.411361 CACCTCGATTTCCATCTGTTAAACA 59.589 40.000 0.00 0.00 0.00 2.83
2224 2251 5.643777 CCTCGATTTCCATCTGTTAAACAGT 59.356 40.000 0.00 0.00 46.03 3.55
2225 2252 6.149474 CCTCGATTTCCATCTGTTAAACAGTT 59.851 38.462 0.00 0.00 46.03 3.16
2226 2253 7.333423 CCTCGATTTCCATCTGTTAAACAGTTA 59.667 37.037 0.00 0.00 46.03 2.24
2227 2254 8.786826 TCGATTTCCATCTGTTAAACAGTTAT 57.213 30.769 0.00 0.00 46.03 1.89
2251 2278 6.521151 AAAAGAGCATCACCCTAATTTCAG 57.479 37.500 0.00 0.00 37.82 3.02
2263 2290 8.160765 TCACCCTAATTTCAGTTCATCAACTAA 58.839 33.333 0.00 0.00 41.24 2.24
2274 2301 9.052759 TCAGTTCATCAACTAAACTTAAGTTCC 57.947 33.333 20.78 0.00 41.24 3.62
2276 2303 9.274206 AGTTCATCAACTAAACTTAAGTTCCTC 57.726 33.333 20.78 3.02 41.39 3.71
2279 2306 8.311836 TCATCAACTAAACTTAAGTTCCTCGAT 58.688 33.333 20.78 15.12 37.25 3.59
2295 2322 9.186837 AGTTCCTCGATAATTATATATCCACGT 57.813 33.333 0.00 0.00 0.00 4.49
2298 2325 9.617523 TCCTCGATAATTATATATCCACGTACA 57.382 33.333 0.00 0.00 0.00 2.90
2299 2326 9.880064 CCTCGATAATTATATATCCACGTACAG 57.120 37.037 0.00 0.00 0.00 2.74
2300 2327 9.383462 CTCGATAATTATATATCCACGTACAGC 57.617 37.037 0.00 0.00 0.00 4.40
2301 2328 9.117183 TCGATAATTATATATCCACGTACAGCT 57.883 33.333 0.00 0.00 0.00 4.24
2316 2343 3.756933 ACAGCTACGAAAGGGTTTACA 57.243 42.857 0.00 0.00 0.00 2.41
2317 2344 4.281898 ACAGCTACGAAAGGGTTTACAT 57.718 40.909 0.00 0.00 0.00 2.29
2318 2345 5.410355 ACAGCTACGAAAGGGTTTACATA 57.590 39.130 0.00 0.00 0.00 2.29
2319 2346 5.797051 ACAGCTACGAAAGGGTTTACATAA 58.203 37.500 0.00 0.00 0.00 1.90
2320 2347 6.412214 ACAGCTACGAAAGGGTTTACATAAT 58.588 36.000 0.00 0.00 0.00 1.28
2321 2348 6.537660 ACAGCTACGAAAGGGTTTACATAATC 59.462 38.462 0.00 0.00 0.00 1.75
2322 2349 6.761714 CAGCTACGAAAGGGTTTACATAATCT 59.238 38.462 0.00 0.00 0.00 2.40
2323 2350 7.280205 CAGCTACGAAAGGGTTTACATAATCTT 59.720 37.037 0.00 0.00 0.00 2.40
2324 2351 7.494952 AGCTACGAAAGGGTTTACATAATCTTC 59.505 37.037 0.00 0.00 0.00 2.87
2325 2352 6.997239 ACGAAAGGGTTTACATAATCTTCC 57.003 37.500 0.00 0.00 0.00 3.46
2326 2353 6.718294 ACGAAAGGGTTTACATAATCTTCCT 58.282 36.000 0.00 0.00 0.00 3.36
2327 2354 7.854337 ACGAAAGGGTTTACATAATCTTCCTA 58.146 34.615 0.00 0.00 0.00 2.94
2328 2355 8.323567 ACGAAAGGGTTTACATAATCTTCCTAA 58.676 33.333 0.00 0.00 0.00 2.69
2329 2356 9.169592 CGAAAGGGTTTACATAATCTTCCTAAA 57.830 33.333 0.00 0.00 0.00 1.85
2344 2371 7.304497 TCTTCCTAAATATACTTCTCTGCCC 57.696 40.000 0.00 0.00 0.00 5.36
2345 2372 6.270231 TCTTCCTAAATATACTTCTCTGCCCC 59.730 42.308 0.00 0.00 0.00 5.80
2346 2373 4.844655 TCCTAAATATACTTCTCTGCCCCC 59.155 45.833 0.00 0.00 0.00 5.40
2366 2393 1.549203 CTGATTTTCAGGTGGGTGGG 58.451 55.000 0.00 0.00 40.71 4.61
2367 2394 0.114168 TGATTTTCAGGTGGGTGGGG 59.886 55.000 0.00 0.00 0.00 4.96
2368 2395 1.229177 ATTTTCAGGTGGGTGGGGC 60.229 57.895 0.00 0.00 0.00 5.80
2369 2396 2.746947 ATTTTCAGGTGGGTGGGGCC 62.747 60.000 0.00 0.00 0.00 5.80
2378 2405 4.062032 GGTGGGGCCCCTTTCTCC 62.062 72.222 40.66 27.69 36.94 3.71
2379 2406 2.941583 GTGGGGCCCCTTTCTCCT 60.942 66.667 40.66 0.00 36.94 3.69
2380 2407 2.614013 TGGGGCCCCTTTCTCCTC 60.614 66.667 40.66 12.40 36.94 3.71
2381 2408 3.421386 GGGGCCCCTTTCTCCTCC 61.421 72.222 35.49 1.84 0.00 4.30
2382 2409 2.286502 GGGCCCCTTTCTCCTCCT 60.287 66.667 12.23 0.00 0.00 3.69
2383 2410 1.931180 GGGCCCCTTTCTCCTCCTT 60.931 63.158 12.23 0.00 0.00 3.36
2384 2411 1.610327 GGCCCCTTTCTCCTCCTTC 59.390 63.158 0.00 0.00 0.00 3.46
2385 2412 1.610327 GCCCCTTTCTCCTCCTTCC 59.390 63.158 0.00 0.00 0.00 3.46
2386 2413 1.927569 GCCCCTTTCTCCTCCTTCCC 61.928 65.000 0.00 0.00 0.00 3.97
2387 2414 1.627297 CCCCTTTCTCCTCCTTCCCG 61.627 65.000 0.00 0.00 0.00 5.14
2388 2415 1.627297 CCCTTTCTCCTCCTTCCCGG 61.627 65.000 0.00 0.00 0.00 5.73
2389 2416 1.222113 CTTTCTCCTCCTTCCCGGC 59.778 63.158 0.00 0.00 0.00 6.13
2390 2417 1.229529 TTTCTCCTCCTTCCCGGCT 60.230 57.895 0.00 0.00 0.00 5.52
2391 2418 0.840722 TTTCTCCTCCTTCCCGGCTT 60.841 55.000 0.00 0.00 0.00 4.35
2392 2419 1.265454 TTCTCCTCCTTCCCGGCTTC 61.265 60.000 0.00 0.00 0.00 3.86
2393 2420 2.687566 TCCTCCTTCCCGGCTTCC 60.688 66.667 0.00 0.00 0.00 3.46
2394 2421 3.798511 CCTCCTTCCCGGCTTCCC 61.799 72.222 0.00 0.00 0.00 3.97
2395 2422 3.798511 CTCCTTCCCGGCTTCCCC 61.799 72.222 0.00 0.00 0.00 4.81
2396 2423 4.667935 TCCTTCCCGGCTTCCCCA 62.668 66.667 0.00 0.00 0.00 4.96
2397 2424 3.657350 CCTTCCCGGCTTCCCCAA 61.657 66.667 0.00 0.00 0.00 4.12
2398 2425 2.683475 CTTCCCGGCTTCCCCAAT 59.317 61.111 0.00 0.00 0.00 3.16
2399 2426 1.754234 CTTCCCGGCTTCCCCAATG 60.754 63.158 0.00 0.00 0.00 2.82
2400 2427 2.210144 CTTCCCGGCTTCCCCAATGA 62.210 60.000 0.00 0.00 0.00 2.57
2401 2428 1.580066 TTCCCGGCTTCCCCAATGAT 61.580 55.000 0.00 0.00 0.00 2.45
2402 2429 1.529244 CCCGGCTTCCCCAATGATC 60.529 63.158 0.00 0.00 0.00 2.92
2403 2430 1.227102 CCGGCTTCCCCAATGATCA 59.773 57.895 0.00 0.00 0.00 2.92
2404 2431 0.178981 CCGGCTTCCCCAATGATCAT 60.179 55.000 1.18 1.18 0.00 2.45
2405 2432 1.696063 CGGCTTCCCCAATGATCATT 58.304 50.000 15.36 15.36 0.00 2.57
2406 2433 2.488891 CCGGCTTCCCCAATGATCATTA 60.489 50.000 20.32 2.51 0.00 1.90
2407 2434 2.816087 CGGCTTCCCCAATGATCATTAG 59.184 50.000 20.32 13.41 0.00 1.73
2408 2435 2.560105 GGCTTCCCCAATGATCATTAGC 59.440 50.000 23.29 23.29 30.55 3.09
2409 2436 2.560105 GCTTCCCCAATGATCATTAGCC 59.440 50.000 20.32 7.10 0.00 3.93
2410 2437 3.836146 CTTCCCCAATGATCATTAGCCA 58.164 45.455 20.32 3.24 0.00 4.75
2411 2438 3.228188 TCCCCAATGATCATTAGCCAC 57.772 47.619 20.32 0.00 0.00 5.01
2412 2439 1.881973 CCCCAATGATCATTAGCCACG 59.118 52.381 20.32 7.34 0.00 4.94
2413 2440 2.575532 CCCAATGATCATTAGCCACGT 58.424 47.619 20.32 0.00 0.00 4.49
2414 2441 2.951642 CCCAATGATCATTAGCCACGTT 59.048 45.455 20.32 0.00 0.00 3.99
2415 2442 3.243168 CCCAATGATCATTAGCCACGTTG 60.243 47.826 20.32 6.76 0.00 4.10
2416 2443 3.365832 CAATGATCATTAGCCACGTTGC 58.634 45.455 20.32 2.86 0.00 4.17
2417 2444 2.401583 TGATCATTAGCCACGTTGCT 57.598 45.000 18.93 18.93 45.38 3.91
2418 2445 3.535280 TGATCATTAGCCACGTTGCTA 57.465 42.857 16.72 16.72 42.75 3.49
2454 2481 9.829507 AGTACGTAACTATCTCTACATAAGTGT 57.170 33.333 0.00 0.00 38.38 3.55
2471 2498 9.367444 ACATAAGTGTAGCATTACTGTAAGTTC 57.633 33.333 6.40 0.00 40.26 3.01
2482 2509 3.729526 CTGTAAGTTCTTGCACCGATG 57.270 47.619 0.00 0.00 0.00 3.84
2483 2510 3.325870 CTGTAAGTTCTTGCACCGATGA 58.674 45.455 0.00 0.00 0.00 2.92
2484 2511 3.935203 CTGTAAGTTCTTGCACCGATGAT 59.065 43.478 0.00 0.00 0.00 2.45
2485 2512 3.684305 TGTAAGTTCTTGCACCGATGATG 59.316 43.478 0.00 0.00 0.00 3.07
2486 2513 1.089920 AGTTCTTGCACCGATGATGC 58.910 50.000 0.00 0.00 43.68 3.91
2487 2514 1.089920 GTTCTTGCACCGATGATGCT 58.910 50.000 0.00 0.00 43.77 3.79
2488 2515 1.063174 GTTCTTGCACCGATGATGCTC 59.937 52.381 0.00 0.00 43.77 4.26
2489 2516 0.462581 TCTTGCACCGATGATGCTCC 60.463 55.000 0.00 0.00 43.77 4.70
2490 2517 0.745486 CTTGCACCGATGATGCTCCA 60.745 55.000 0.00 0.00 43.77 3.86
2491 2518 0.107066 TTGCACCGATGATGCTCCAT 60.107 50.000 0.00 0.00 43.77 3.41
2492 2519 0.533531 TGCACCGATGATGCTCCATC 60.534 55.000 8.29 8.29 43.77 3.51
2493 2520 0.250209 GCACCGATGATGCTCCATCT 60.250 55.000 14.03 0.00 41.06 2.90
2494 2521 1.001293 GCACCGATGATGCTCCATCTA 59.999 52.381 14.03 0.00 41.06 1.98
2495 2522 2.354503 GCACCGATGATGCTCCATCTAT 60.355 50.000 14.03 0.00 41.06 1.98
2496 2523 3.519579 CACCGATGATGCTCCATCTATC 58.480 50.000 14.03 7.00 41.06 2.08
2497 2524 3.195182 CACCGATGATGCTCCATCTATCT 59.805 47.826 14.03 0.00 41.06 1.98
2498 2525 4.400567 CACCGATGATGCTCCATCTATCTA 59.599 45.833 14.03 0.00 41.06 1.98
2499 2526 5.068855 CACCGATGATGCTCCATCTATCTAT 59.931 44.000 14.03 0.00 41.06 1.98
2500 2527 5.068855 ACCGATGATGCTCCATCTATCTATG 59.931 44.000 14.03 0.00 41.06 2.23
2501 2528 5.301298 CCGATGATGCTCCATCTATCTATGA 59.699 44.000 14.03 0.00 41.06 2.15
2502 2529 6.183360 CCGATGATGCTCCATCTATCTATGAA 60.183 42.308 14.03 0.00 41.06 2.57
2503 2530 6.919115 CGATGATGCTCCATCTATCTATGAAG 59.081 42.308 14.03 0.00 41.06 3.02
2504 2531 7.201803 CGATGATGCTCCATCTATCTATGAAGA 60.202 40.741 14.03 0.00 41.06 2.87
2505 2532 7.787623 TGATGCTCCATCTATCTATGAAGAA 57.212 36.000 6.74 0.00 41.06 2.52
2506 2533 8.198807 TGATGCTCCATCTATCTATGAAGAAA 57.801 34.615 6.74 0.00 41.06 2.52
2507 2534 8.654094 TGATGCTCCATCTATCTATGAAGAAAA 58.346 33.333 6.74 0.00 41.06 2.29
2508 2535 8.845413 ATGCTCCATCTATCTATGAAGAAAAC 57.155 34.615 0.00 0.00 34.73 2.43
2509 2536 8.027524 TGCTCCATCTATCTATGAAGAAAACT 57.972 34.615 0.00 0.00 34.73 2.66
2510 2537 9.147732 TGCTCCATCTATCTATGAAGAAAACTA 57.852 33.333 0.00 0.00 34.73 2.24
2511 2538 9.418045 GCTCCATCTATCTATGAAGAAAACTAC 57.582 37.037 0.00 0.00 34.73 2.73
2512 2539 9.921637 CTCCATCTATCTATGAAGAAAACTACC 57.078 37.037 0.00 0.00 34.73 3.18
2513 2540 9.661954 TCCATCTATCTATGAAGAAAACTACCT 57.338 33.333 0.00 0.00 34.73 3.08
2532 2559 9.544579 AACTACCTAAAGTAATGTAACCTCTCT 57.455 33.333 0.00 0.00 0.00 3.10
2536 2563 8.756927 ACCTAAAGTAATGTAACCTCTCTAACC 58.243 37.037 0.00 0.00 0.00 2.85
2537 2564 8.755977 CCTAAAGTAATGTAACCTCTCTAACCA 58.244 37.037 0.00 0.00 0.00 3.67
2546 2573 8.840200 TGTAACCTCTCTAACCATAATTCTCT 57.160 34.615 0.00 0.00 0.00 3.10
2547 2574 8.915036 TGTAACCTCTCTAACCATAATTCTCTC 58.085 37.037 0.00 0.00 0.00 3.20
2548 2575 9.138596 GTAACCTCTCTAACCATAATTCTCTCT 57.861 37.037 0.00 0.00 0.00 3.10
2549 2576 7.833285 ACCTCTCTAACCATAATTCTCTCTC 57.167 40.000 0.00 0.00 0.00 3.20
2550 2577 6.780522 ACCTCTCTAACCATAATTCTCTCTCC 59.219 42.308 0.00 0.00 0.00 3.71
2551 2578 6.072175 CCTCTCTAACCATAATTCTCTCTCCG 60.072 46.154 0.00 0.00 0.00 4.63
2552 2579 5.241949 TCTCTAACCATAATTCTCTCTCCGC 59.758 44.000 0.00 0.00 0.00 5.54
2553 2580 3.477210 AACCATAATTCTCTCTCCGCC 57.523 47.619 0.00 0.00 0.00 6.13
2554 2581 2.683768 ACCATAATTCTCTCTCCGCCT 58.316 47.619 0.00 0.00 0.00 5.52
2555 2582 2.366916 ACCATAATTCTCTCTCCGCCTG 59.633 50.000 0.00 0.00 0.00 4.85
2556 2583 2.630098 CCATAATTCTCTCTCCGCCTGA 59.370 50.000 0.00 0.00 0.00 3.86
2557 2584 3.260380 CCATAATTCTCTCTCCGCCTGAT 59.740 47.826 0.00 0.00 0.00 2.90
2558 2585 4.262808 CCATAATTCTCTCTCCGCCTGATT 60.263 45.833 0.00 0.00 0.00 2.57
2559 2586 3.922171 AATTCTCTCTCCGCCTGATTT 57.078 42.857 0.00 0.00 0.00 2.17
2560 2587 2.680312 TTCTCTCTCCGCCTGATTTG 57.320 50.000 0.00 0.00 0.00 2.32
2561 2588 1.852633 TCTCTCTCCGCCTGATTTGA 58.147 50.000 0.00 0.00 0.00 2.69
2562 2589 1.753649 TCTCTCTCCGCCTGATTTGAG 59.246 52.381 0.00 0.00 0.00 3.02
2563 2590 0.176680 TCTCTCCGCCTGATTTGAGC 59.823 55.000 0.00 0.00 0.00 4.26
2564 2591 0.107993 CTCTCCGCCTGATTTGAGCA 60.108 55.000 0.00 0.00 0.00 4.26
2565 2592 0.324614 TCTCCGCCTGATTTGAGCAA 59.675 50.000 0.00 0.00 0.00 3.91
2566 2593 1.065199 TCTCCGCCTGATTTGAGCAAT 60.065 47.619 0.00 0.00 0.00 3.56
2567 2594 1.065102 CTCCGCCTGATTTGAGCAATG 59.935 52.381 0.00 0.00 0.00 2.82
2568 2595 0.526954 CCGCCTGATTTGAGCAATGC 60.527 55.000 0.00 0.00 0.00 3.56
2569 2596 0.454600 CGCCTGATTTGAGCAATGCT 59.545 50.000 7.79 7.79 43.88 3.79
2570 2597 1.672363 CGCCTGATTTGAGCAATGCTA 59.328 47.619 8.12 0.00 39.88 3.49
2571 2598 2.540361 CGCCTGATTTGAGCAATGCTAC 60.540 50.000 8.12 2.57 39.88 3.58
2572 2599 2.424601 GCCTGATTTGAGCAATGCTACA 59.575 45.455 8.12 5.47 39.88 2.74
2573 2600 3.067742 GCCTGATTTGAGCAATGCTACAT 59.932 43.478 8.12 0.00 39.88 2.29
2574 2601 4.276678 GCCTGATTTGAGCAATGCTACATA 59.723 41.667 8.12 4.15 39.88 2.29
2575 2602 5.048224 GCCTGATTTGAGCAATGCTACATAT 60.048 40.000 8.12 8.76 39.88 1.78
2576 2603 6.149973 GCCTGATTTGAGCAATGCTACATATA 59.850 38.462 8.12 0.00 39.88 0.86
2577 2604 7.524912 CCTGATTTGAGCAATGCTACATATAC 58.475 38.462 8.12 0.00 39.88 1.47
2578 2605 7.120789 TGATTTGAGCAATGCTACATATACG 57.879 36.000 8.12 0.00 39.88 3.06
2579 2606 6.928492 TGATTTGAGCAATGCTACATATACGA 59.072 34.615 8.12 0.00 39.88 3.43
2580 2607 7.440856 TGATTTGAGCAATGCTACATATACGAA 59.559 33.333 8.12 0.02 39.88 3.85
2581 2608 6.769608 TTGAGCAATGCTACATATACGAAG 57.230 37.500 8.12 0.00 39.88 3.79
2582 2609 6.084326 TGAGCAATGCTACATATACGAAGA 57.916 37.500 8.12 0.00 39.88 2.87
2583 2610 6.152379 TGAGCAATGCTACATATACGAAGAG 58.848 40.000 8.12 0.00 39.88 2.85
2584 2611 4.926238 AGCAATGCTACATATACGAAGAGC 59.074 41.667 5.69 0.00 36.99 4.09
2585 2612 4.926238 GCAATGCTACATATACGAAGAGCT 59.074 41.667 0.00 0.00 0.00 4.09
2586 2613 6.071896 AGCAATGCTACATATACGAAGAGCTA 60.072 38.462 5.69 0.00 36.99 3.32
2587 2614 6.034044 GCAATGCTACATATACGAAGAGCTAC 59.966 42.308 0.00 0.00 0.00 3.58
2588 2615 5.278964 TGCTACATATACGAAGAGCTACG 57.721 43.478 0.00 6.01 0.00 3.51
2589 2616 4.753610 TGCTACATATACGAAGAGCTACGT 59.246 41.667 15.21 15.21 44.72 3.57
2590 2617 5.237996 TGCTACATATACGAAGAGCTACGTT 59.762 40.000 15.87 8.54 42.61 3.99
2591 2618 5.789512 GCTACATATACGAAGAGCTACGTTC 59.210 44.000 15.87 5.80 42.61 3.95
2592 2619 5.746307 ACATATACGAAGAGCTACGTTCA 57.254 39.130 15.87 7.13 42.61 3.18
2593 2620 5.749620 ACATATACGAAGAGCTACGTTCAG 58.250 41.667 15.87 8.50 42.61 3.02
2594 2621 5.296283 ACATATACGAAGAGCTACGTTCAGT 59.704 40.000 15.87 10.28 42.61 3.41
2595 2622 4.698583 ATACGAAGAGCTACGTTCAGTT 57.301 40.909 15.87 0.00 42.61 3.16
2596 2623 3.366440 ACGAAGAGCTACGTTCAGTTT 57.634 42.857 0.00 0.00 39.75 2.66
2597 2624 3.714391 ACGAAGAGCTACGTTCAGTTTT 58.286 40.909 0.00 0.00 39.75 2.43
2598 2625 4.863491 ACGAAGAGCTACGTTCAGTTTTA 58.137 39.130 0.00 0.00 39.75 1.52
2599 2626 4.678742 ACGAAGAGCTACGTTCAGTTTTAC 59.321 41.667 0.00 0.00 39.75 2.01
2600 2627 4.201372 CGAAGAGCTACGTTCAGTTTTACG 60.201 45.833 0.00 0.00 43.08 3.18
2609 2636 4.634991 CGTTCAGTTTTACGTGATTAGCC 58.365 43.478 0.00 0.00 33.33 3.93
2610 2637 4.150980 CGTTCAGTTTTACGTGATTAGCCA 59.849 41.667 0.00 0.00 33.33 4.75
2611 2638 5.379827 GTTCAGTTTTACGTGATTAGCCAC 58.620 41.667 0.00 0.00 0.00 5.01
2612 2639 4.890088 TCAGTTTTACGTGATTAGCCACT 58.110 39.130 0.00 0.00 35.02 4.00
2613 2640 5.302360 TCAGTTTTACGTGATTAGCCACTT 58.698 37.500 0.00 0.00 35.02 3.16
2614 2641 5.178623 TCAGTTTTACGTGATTAGCCACTTG 59.821 40.000 0.00 0.00 35.02 3.16
2615 2642 4.454504 AGTTTTACGTGATTAGCCACTTGG 59.545 41.667 0.00 0.00 35.02 3.61
2630 2657 5.850557 CCACTTGGCAATGTATAATTGGA 57.149 39.130 0.00 0.00 0.00 3.53
2631 2658 6.219417 CCACTTGGCAATGTATAATTGGAA 57.781 37.500 0.00 0.00 0.00 3.53
2632 2659 6.275335 CCACTTGGCAATGTATAATTGGAAG 58.725 40.000 0.00 0.00 0.00 3.46
2633 2660 6.127366 CCACTTGGCAATGTATAATTGGAAGT 60.127 38.462 0.00 0.00 0.00 3.01
2634 2661 7.068103 CCACTTGGCAATGTATAATTGGAAGTA 59.932 37.037 0.00 0.00 0.00 2.24
2635 2662 8.131100 CACTTGGCAATGTATAATTGGAAGTAG 58.869 37.037 0.00 0.00 0.00 2.57
2636 2663 7.285401 ACTTGGCAATGTATAATTGGAAGTAGG 59.715 37.037 0.00 0.00 0.00 3.18
2637 2664 6.068010 TGGCAATGTATAATTGGAAGTAGGG 58.932 40.000 0.67 0.00 0.00 3.53
2638 2665 5.476945 GGCAATGTATAATTGGAAGTAGGGG 59.523 44.000 0.67 0.00 0.00 4.79
2639 2666 5.476945 GCAATGTATAATTGGAAGTAGGGGG 59.523 44.000 0.67 0.00 0.00 5.40
2665 2692 3.411517 CGTGGGCCCCTCAATCCT 61.412 66.667 22.27 0.00 0.00 3.24
2666 2693 2.597903 GTGGGCCCCTCAATCCTC 59.402 66.667 22.27 0.00 0.00 3.71
2667 2694 2.003548 GTGGGCCCCTCAATCCTCT 61.004 63.158 22.27 0.00 0.00 3.69
2668 2695 2.002977 TGGGCCCCTCAATCCTCTG 61.003 63.158 22.27 0.00 0.00 3.35
2669 2696 1.694169 GGGCCCCTCAATCCTCTGA 60.694 63.158 12.23 0.00 0.00 3.27
2670 2697 1.529309 GGCCCCTCAATCCTCTGAC 59.471 63.158 0.00 0.00 0.00 3.51
2671 2698 1.274703 GGCCCCTCAATCCTCTGACA 61.275 60.000 0.00 0.00 0.00 3.58
2672 2699 0.842635 GCCCCTCAATCCTCTGACAT 59.157 55.000 0.00 0.00 0.00 3.06
2673 2700 1.213926 GCCCCTCAATCCTCTGACATT 59.786 52.381 0.00 0.00 0.00 2.71
2674 2701 2.747799 GCCCCTCAATCCTCTGACATTC 60.748 54.545 0.00 0.00 0.00 2.67
2675 2702 2.507058 CCCCTCAATCCTCTGACATTCA 59.493 50.000 0.00 0.00 0.00 2.57
2676 2703 3.054139 CCCCTCAATCCTCTGACATTCAA 60.054 47.826 0.00 0.00 0.00 2.69
2677 2704 4.386088 CCCCTCAATCCTCTGACATTCAAT 60.386 45.833 0.00 0.00 0.00 2.57
2678 2705 4.820716 CCCTCAATCCTCTGACATTCAATC 59.179 45.833 0.00 0.00 0.00 2.67
2679 2706 4.820716 CCTCAATCCTCTGACATTCAATCC 59.179 45.833 0.00 0.00 0.00 3.01
2680 2707 5.397672 CCTCAATCCTCTGACATTCAATCCT 60.398 44.000 0.00 0.00 0.00 3.24
2681 2708 6.183361 CCTCAATCCTCTGACATTCAATCCTA 60.183 42.308 0.00 0.00 0.00 2.94
2682 2709 6.586344 TCAATCCTCTGACATTCAATCCTAC 58.414 40.000 0.00 0.00 0.00 3.18
2683 2710 6.385176 TCAATCCTCTGACATTCAATCCTACT 59.615 38.462 0.00 0.00 0.00 2.57
2684 2711 6.821616 ATCCTCTGACATTCAATCCTACTT 57.178 37.500 0.00 0.00 0.00 2.24
2685 2712 7.921041 ATCCTCTGACATTCAATCCTACTTA 57.079 36.000 0.00 0.00 0.00 2.24
2686 2713 7.921041 TCCTCTGACATTCAATCCTACTTAT 57.079 36.000 0.00 0.00 0.00 1.73
2687 2714 7.957002 TCCTCTGACATTCAATCCTACTTATC 58.043 38.462 0.00 0.00 0.00 1.75
2688 2715 7.015682 TCCTCTGACATTCAATCCTACTTATCC 59.984 40.741 0.00 0.00 0.00 2.59
2689 2716 7.202038 CCTCTGACATTCAATCCTACTTATCCA 60.202 40.741 0.00 0.00 0.00 3.41
2690 2717 7.500992 TCTGACATTCAATCCTACTTATCCAC 58.499 38.462 0.00 0.00 0.00 4.02
2691 2718 6.280643 TGACATTCAATCCTACTTATCCACG 58.719 40.000 0.00 0.00 0.00 4.94
2692 2719 6.127168 TGACATTCAATCCTACTTATCCACGT 60.127 38.462 0.00 0.00 0.00 4.49
2693 2720 6.650120 ACATTCAATCCTACTTATCCACGTT 58.350 36.000 0.00 0.00 0.00 3.99
2694 2721 6.538742 ACATTCAATCCTACTTATCCACGTTG 59.461 38.462 0.00 0.00 0.00 4.10
2695 2722 5.018539 TCAATCCTACTTATCCACGTTGG 57.981 43.478 0.00 0.00 39.43 3.77
2696 2723 4.468510 TCAATCCTACTTATCCACGTTGGT 59.531 41.667 0.00 0.00 39.03 3.67
2697 2724 5.046159 TCAATCCTACTTATCCACGTTGGTT 60.046 40.000 0.00 0.00 39.03 3.67
2698 2725 6.154877 TCAATCCTACTTATCCACGTTGGTTA 59.845 38.462 0.00 0.00 39.03 2.85
2699 2726 6.742559 ATCCTACTTATCCACGTTGGTTAT 57.257 37.500 0.00 0.00 39.03 1.89
2700 2727 6.549433 TCCTACTTATCCACGTTGGTTATT 57.451 37.500 0.00 0.00 39.03 1.40
2701 2728 7.658525 TCCTACTTATCCACGTTGGTTATTA 57.341 36.000 0.00 0.00 39.03 0.98
2702 2729 8.253867 TCCTACTTATCCACGTTGGTTATTAT 57.746 34.615 0.00 0.00 39.03 1.28
2703 2730 8.145767 TCCTACTTATCCACGTTGGTTATTATG 58.854 37.037 0.00 0.00 39.03 1.90
2704 2731 7.929785 CCTACTTATCCACGTTGGTTATTATGT 59.070 37.037 0.00 0.00 39.03 2.29
2705 2732 9.970395 CTACTTATCCACGTTGGTTATTATGTA 57.030 33.333 0.00 0.00 39.03 2.29
2707 2734 9.321562 ACTTATCCACGTTGGTTATTATGTAAG 57.678 33.333 0.00 0.00 39.03 2.34
2708 2735 8.665643 TTATCCACGTTGGTTATTATGTAAGG 57.334 34.615 0.00 0.00 39.03 2.69
2709 2736 6.052405 TCCACGTTGGTTATTATGTAAGGT 57.948 37.500 0.00 0.00 39.03 3.50
2710 2737 7.180322 TCCACGTTGGTTATTATGTAAGGTA 57.820 36.000 0.00 0.00 39.03 3.08
2711 2738 7.794041 TCCACGTTGGTTATTATGTAAGGTAT 58.206 34.615 0.00 0.00 39.03 2.73
2712 2739 8.922237 TCCACGTTGGTTATTATGTAAGGTATA 58.078 33.333 0.00 0.00 39.03 1.47
2713 2740 9.715121 CCACGTTGGTTATTATGTAAGGTATAT 57.285 33.333 0.00 0.00 31.35 0.86
2747 2774 4.929781 CGTAAGTGTAGGGAAGTCATACC 58.070 47.826 0.00 0.00 0.00 2.73
2754 2781 0.906775 GGGAAGTCATACCCGTGGAA 59.093 55.000 0.00 0.00 36.56 3.53
2783 2810 5.115480 CGGTATTTGAAATTTGGGATTGGG 58.885 41.667 0.00 0.00 0.00 4.12
2789 2816 2.925966 AATTTGGGATTGGGCTCTCA 57.074 45.000 0.00 0.00 0.00 3.27
2801 2828 3.614092 TGGGCTCTCAAGTCATTTCATC 58.386 45.455 0.00 0.00 0.00 2.92
2834 2862 3.305720 AGTTCTTACACACAGGGAGTCA 58.694 45.455 0.00 0.00 0.00 3.41
2835 2863 3.322254 AGTTCTTACACACAGGGAGTCAG 59.678 47.826 0.00 0.00 0.00 3.51
2836 2864 1.618837 TCTTACACACAGGGAGTCAGC 59.381 52.381 0.00 0.00 0.00 4.26
2837 2865 0.685097 TTACACACAGGGAGTCAGCC 59.315 55.000 0.00 0.00 0.00 4.85
2870 2898 1.448717 GGTTTGGGAGCGAGCTCTC 60.449 63.158 22.37 20.04 43.57 3.20
2878 2906 2.880963 GAGCGAGCTCTCCAGTAAAT 57.119 50.000 17.03 0.00 39.80 1.40
2879 2907 3.992260 GAGCGAGCTCTCCAGTAAATA 57.008 47.619 17.03 0.00 39.80 1.40
2880 2908 3.634283 GAGCGAGCTCTCCAGTAAATAC 58.366 50.000 17.03 0.00 39.80 1.89
2881 2909 2.362717 AGCGAGCTCTCCAGTAAATACC 59.637 50.000 12.85 0.00 0.00 2.73
2882 2910 2.546162 GCGAGCTCTCCAGTAAATACCC 60.546 54.545 12.85 0.00 0.00 3.69
2883 2911 2.036089 CGAGCTCTCCAGTAAATACCCC 59.964 54.545 12.85 0.00 0.00 4.95
2884 2912 3.039011 GAGCTCTCCAGTAAATACCCCA 58.961 50.000 6.43 0.00 0.00 4.96
2885 2913 3.454812 GAGCTCTCCAGTAAATACCCCAA 59.545 47.826 6.43 0.00 0.00 4.12
2886 2914 3.850173 AGCTCTCCAGTAAATACCCCAAA 59.150 43.478 0.00 0.00 0.00 3.28
2887 2915 4.291249 AGCTCTCCAGTAAATACCCCAAAA 59.709 41.667 0.00 0.00 0.00 2.44
2888 2916 4.398358 GCTCTCCAGTAAATACCCCAAAAC 59.602 45.833 0.00 0.00 0.00 2.43
2889 2917 5.806734 GCTCTCCAGTAAATACCCCAAAACT 60.807 44.000 0.00 0.00 0.00 2.66
2890 2918 6.577638 GCTCTCCAGTAAATACCCCAAAACTA 60.578 42.308 0.00 0.00 0.00 2.24
2891 2919 7.519347 TCTCCAGTAAATACCCCAAAACTAT 57.481 36.000 0.00 0.00 0.00 2.12
2892 2920 7.571025 TCTCCAGTAAATACCCCAAAACTATC 58.429 38.462 0.00 0.00 0.00 2.08
2893 2921 6.350906 TCCAGTAAATACCCCAAAACTATCG 58.649 40.000 0.00 0.00 0.00 2.92
2894 2922 5.008316 CCAGTAAATACCCCAAAACTATCGC 59.992 44.000 0.00 0.00 0.00 4.58
2895 2923 5.820947 CAGTAAATACCCCAAAACTATCGCT 59.179 40.000 0.00 0.00 0.00 4.93
2896 2924 6.317893 CAGTAAATACCCCAAAACTATCGCTT 59.682 38.462 0.00 0.00 0.00 4.68
2897 2925 6.888088 AGTAAATACCCCAAAACTATCGCTTT 59.112 34.615 0.00 0.00 0.00 3.51
2898 2926 6.599356 AAATACCCCAAAACTATCGCTTTT 57.401 33.333 0.00 0.00 0.00 2.27
2899 2927 7.706100 AAATACCCCAAAACTATCGCTTTTA 57.294 32.000 0.00 0.00 0.00 1.52
2900 2928 7.891498 AATACCCCAAAACTATCGCTTTTAT 57.109 32.000 0.00 0.00 0.00 1.40
2901 2929 5.576447 ACCCCAAAACTATCGCTTTTATG 57.424 39.130 0.00 0.00 0.00 1.90
2902 2930 4.142249 ACCCCAAAACTATCGCTTTTATGC 60.142 41.667 0.00 0.00 0.00 3.14
2903 2931 4.359706 CCCAAAACTATCGCTTTTATGCC 58.640 43.478 0.00 0.00 0.00 4.40
2904 2932 4.142271 CCCAAAACTATCGCTTTTATGCCA 60.142 41.667 0.00 0.00 0.00 4.92
2905 2933 5.036737 CCAAAACTATCGCTTTTATGCCAG 58.963 41.667 0.00 0.00 0.00 4.85
2958 2993 7.032598 ACTTCCTCCTTTCCAAAATATGAGA 57.967 36.000 0.00 0.00 0.00 3.27
2959 2994 6.887002 ACTTCCTCCTTTCCAAAATATGAGAC 59.113 38.462 0.00 0.00 0.00 3.36
2967 3002 5.900339 TCCAAAATATGAGACGCGTATTC 57.100 39.130 13.97 14.25 37.64 1.75
2969 3004 5.989168 TCCAAAATATGAGACGCGTATTCAT 59.011 36.000 29.79 29.79 37.64 2.57
3064 3100 4.701651 ATATGAAAGAGCAGAGGCATCA 57.298 40.909 0.00 0.00 44.61 3.07
3069 3105 2.875094 AGAGCAGAGGCATCAAAGTT 57.125 45.000 0.00 0.00 44.61 2.66
3074 3110 2.670509 GCAGAGGCATCAAAGTTGCTTC 60.671 50.000 0.00 4.59 44.08 3.86
3078 3114 3.159472 AGGCATCAAAGTTGCTTCATCA 58.841 40.909 0.00 0.00 40.03 3.07
3086 3122 2.032634 TTGCTTCATCACGGCCGTC 61.033 57.895 31.80 16.38 0.00 4.79
3087 3123 2.434185 GCTTCATCACGGCCGTCA 60.434 61.111 31.80 19.53 0.00 4.35
3096 3133 0.948623 CACGGCCGTCATGTTCTTCA 60.949 55.000 31.80 0.00 0.00 3.02
3098 3135 0.443869 CGGCCGTCATGTTCTTCAAG 59.556 55.000 19.50 0.00 0.00 3.02
3101 3138 2.749621 GGCCGTCATGTTCTTCAAGATT 59.250 45.455 0.00 0.00 0.00 2.40
3115 3152 4.790765 TCAAGATTGACAGAGTCGTCAT 57.209 40.909 15.31 8.33 45.03 3.06
3119 3156 0.678950 TTGACAGAGTCGTCATGCCA 59.321 50.000 15.31 2.35 45.03 4.92
3134 3171 0.674581 TGCCATCAAAGCCTCTCACG 60.675 55.000 0.00 0.00 0.00 4.35
3145 3182 2.609299 TCTCACGGGGCCATCCAA 60.609 61.111 4.39 0.00 37.22 3.53
3150 3187 0.182537 CACGGGGCCATCCAATCTTA 59.817 55.000 4.39 0.00 37.22 2.10
3154 3191 2.529632 GGGGCCATCCAATCTTAATCC 58.470 52.381 4.39 0.00 37.22 3.01
3168 3205 9.722056 CCAATCTTAATCCATTCTCTTTTAACG 57.278 33.333 0.00 0.00 0.00 3.18
3181 3218 2.661840 TTTAACGGTGGTGCGCCTGA 62.662 55.000 18.96 0.00 35.27 3.86
3182 3219 3.583276 TAACGGTGGTGCGCCTGAG 62.583 63.158 18.96 10.64 35.27 3.35
3235 3272 9.090103 CCATACTCTTAAGTGGGAACTCATATA 57.910 37.037 9.23 0.00 36.92 0.86
3241 3278 5.934402 AAGTGGGAACTCATATACGTCTT 57.066 39.130 0.00 0.00 0.00 3.01
3242 3279 5.934402 AGTGGGAACTCATATACGTCTTT 57.066 39.130 0.00 0.00 0.00 2.52
3243 3280 6.295719 AGTGGGAACTCATATACGTCTTTT 57.704 37.500 0.00 0.00 0.00 2.27
3244 3281 6.338937 AGTGGGAACTCATATACGTCTTTTC 58.661 40.000 0.00 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 9.277783 CCTCTTGTTCTTATCTTCTTTCTGAAA 57.722 33.333 2.44 2.44 33.79 2.69
145 147 0.682855 CCTCTCCAAGCTCGACCTCT 60.683 60.000 0.00 0.00 0.00 3.69
327 331 0.390603 CGGCTCATGTTACCAACCGA 60.391 55.000 0.00 0.00 41.61 4.69
336 340 2.618045 CCCTTTAGTTCCGGCTCATGTT 60.618 50.000 0.00 0.00 0.00 2.71
420 424 0.034477 GGATGAACCCGGACCAATGT 60.034 55.000 0.73 0.00 0.00 2.71
504 508 2.348888 CCCGGTTCGTGAGCCTAGT 61.349 63.158 0.00 0.00 0.00 2.57
582 586 1.760029 GAAAACAGGGCTTTGGTCCAA 59.240 47.619 0.00 0.00 40.27 3.53
620 624 3.235195 CGGTATAGAGTACTGCGAATGC 58.765 50.000 0.00 0.00 43.20 3.56
621 625 3.822996 CCGGTATAGAGTACTGCGAATG 58.177 50.000 0.00 0.00 0.00 2.67
622 626 2.228343 GCCGGTATAGAGTACTGCGAAT 59.772 50.000 0.00 0.00 0.00 3.34
623 627 1.605710 GCCGGTATAGAGTACTGCGAA 59.394 52.381 0.00 0.00 0.00 4.70
624 628 1.233019 GCCGGTATAGAGTACTGCGA 58.767 55.000 0.00 0.00 0.00 5.10
625 629 0.949397 TGCCGGTATAGAGTACTGCG 59.051 55.000 0.00 0.00 0.00 5.18
626 630 1.336056 GCTGCCGGTATAGAGTACTGC 60.336 57.143 0.00 0.00 0.00 4.40
627 631 1.954382 TGCTGCCGGTATAGAGTACTG 59.046 52.381 0.00 0.00 0.00 2.74
628 632 2.359981 TGCTGCCGGTATAGAGTACT 57.640 50.000 1.90 0.00 0.00 2.73
629 633 2.100252 TGTTGCTGCCGGTATAGAGTAC 59.900 50.000 1.90 0.00 0.00 2.73
630 634 2.361119 CTGTTGCTGCCGGTATAGAGTA 59.639 50.000 1.90 0.00 0.00 2.59
631 635 1.137086 CTGTTGCTGCCGGTATAGAGT 59.863 52.381 1.90 0.00 0.00 3.24
632 636 1.409064 TCTGTTGCTGCCGGTATAGAG 59.591 52.381 1.90 0.00 0.00 2.43
633 637 1.480789 TCTGTTGCTGCCGGTATAGA 58.519 50.000 1.90 0.00 0.00 1.98
634 638 2.533266 ATCTGTTGCTGCCGGTATAG 57.467 50.000 1.90 0.14 0.00 1.31
635 639 2.560504 CAATCTGTTGCTGCCGGTATA 58.439 47.619 1.90 0.00 0.00 1.47
636 640 1.382522 CAATCTGTTGCTGCCGGTAT 58.617 50.000 1.90 0.00 0.00 2.73
637 641 0.676466 CCAATCTGTTGCTGCCGGTA 60.676 55.000 1.90 0.00 33.90 4.02
638 642 1.973281 CCAATCTGTTGCTGCCGGT 60.973 57.895 1.90 0.00 33.90 5.28
639 643 1.973281 ACCAATCTGTTGCTGCCGG 60.973 57.895 0.00 0.00 33.90 6.13
640 644 1.210931 CACCAATCTGTTGCTGCCG 59.789 57.895 0.00 0.00 33.90 5.69
641 645 1.588082 CCACCAATCTGTTGCTGCC 59.412 57.895 0.00 0.00 33.90 4.85
642 646 1.080298 GCCACCAATCTGTTGCTGC 60.080 57.895 0.00 0.00 33.90 5.25
643 647 0.963962 AAGCCACCAATCTGTTGCTG 59.036 50.000 0.00 0.00 37.31 4.41
644 648 1.251251 GAAGCCACCAATCTGTTGCT 58.749 50.000 0.00 0.00 38.74 3.91
645 649 0.244721 GGAAGCCACCAATCTGTTGC 59.755 55.000 0.00 0.00 33.90 4.17
646 650 0.890683 GGGAAGCCACCAATCTGTTG 59.109 55.000 0.00 0.00 35.05 3.33
647 651 0.482446 TGGGAAGCCACCAATCTGTT 59.518 50.000 0.00 0.00 34.44 3.16
648 652 0.706433 ATGGGAAGCCACCAATCTGT 59.294 50.000 0.00 0.00 42.17 3.41
649 653 1.064166 AGATGGGAAGCCACCAATCTG 60.064 52.381 13.77 0.00 45.78 2.90
650 654 1.302907 AGATGGGAAGCCACCAATCT 58.697 50.000 9.96 9.96 43.59 2.40
651 655 2.149973 AAGATGGGAAGCCACCAATC 57.850 50.000 6.14 6.14 42.17 2.67
652 656 2.181975 CAAAGATGGGAAGCCACCAAT 58.818 47.619 0.00 0.00 42.17 3.16
653 657 1.133199 ACAAAGATGGGAAGCCACCAA 60.133 47.619 0.00 0.00 42.17 3.67
654 658 0.482446 ACAAAGATGGGAAGCCACCA 59.518 50.000 0.00 0.00 43.22 4.17
655 659 0.890683 CACAAAGATGGGAAGCCACC 59.109 55.000 0.00 0.00 28.29 4.61
656 660 1.909700 TCACAAAGATGGGAAGCCAC 58.090 50.000 0.00 0.00 35.57 5.01
657 661 2.905415 ATCACAAAGATGGGAAGCCA 57.095 45.000 0.00 0.00 43.63 4.75
666 670 7.392673 AGAGAGTTTTATGCACATCACAAAGAT 59.607 33.333 0.00 0.00 37.48 2.40
667 671 6.712095 AGAGAGTTTTATGCACATCACAAAGA 59.288 34.615 0.00 0.00 0.00 2.52
668 672 6.906659 AGAGAGTTTTATGCACATCACAAAG 58.093 36.000 0.00 0.00 0.00 2.77
669 673 6.882610 AGAGAGTTTTATGCACATCACAAA 57.117 33.333 0.00 0.00 0.00 2.83
670 674 6.712095 AGAAGAGAGTTTTATGCACATCACAA 59.288 34.615 0.00 0.00 0.00 3.33
671 675 6.148315 CAGAAGAGAGTTTTATGCACATCACA 59.852 38.462 0.00 0.00 0.00 3.58
672 676 6.541086 CAGAAGAGAGTTTTATGCACATCAC 58.459 40.000 0.00 0.00 0.00 3.06
673 677 5.122869 GCAGAAGAGAGTTTTATGCACATCA 59.877 40.000 0.00 0.00 32.58 3.07
674 678 5.353678 AGCAGAAGAGAGTTTTATGCACATC 59.646 40.000 7.25 0.00 34.71 3.06
675 679 5.251764 AGCAGAAGAGAGTTTTATGCACAT 58.748 37.500 7.25 0.00 34.71 3.21
676 680 4.645535 AGCAGAAGAGAGTTTTATGCACA 58.354 39.130 7.25 0.00 34.71 4.57
677 681 5.619625 AAGCAGAAGAGAGTTTTATGCAC 57.380 39.130 7.25 0.00 34.71 4.57
678 682 9.618890 ATTATAAGCAGAAGAGAGTTTTATGCA 57.381 29.630 7.25 0.00 34.71 3.96
734 738 8.950210 CATCCATCTTAGCCATCGTATAAAAAT 58.050 33.333 0.00 0.00 0.00 1.82
740 744 4.096681 TCCATCCATCTTAGCCATCGTAT 58.903 43.478 0.00 0.00 0.00 3.06
762 766 4.142609 ACAATCTCAGCCGTTCATGTAT 57.857 40.909 0.00 0.00 0.00 2.29
771 775 1.991430 CGACGAACAATCTCAGCCG 59.009 57.895 0.00 0.00 0.00 5.52
777 781 3.684103 TTTTTGTGCGACGAACAATCT 57.316 38.095 21.71 0.00 37.38 2.40
790 794 3.845775 CAGGTGCGATTACGATTTTTGTG 59.154 43.478 0.00 0.00 42.66 3.33
807 812 1.518133 GAGAGCGCTGCTACAGGTG 60.518 63.158 18.48 0.00 39.88 4.00
825 830 1.947456 TCTCGGGTAGATCACATGTCG 59.053 52.381 0.00 0.00 0.00 4.35
826 831 4.302455 CAATCTCGGGTAGATCACATGTC 58.698 47.826 0.00 0.00 44.56 3.06
843 848 1.590932 CGCAGCATCTAAGCCAATCT 58.409 50.000 0.00 0.00 34.23 2.40
891 896 9.713684 AATCTAACCAGGAATTCCAAATCATAA 57.286 29.630 26.22 5.92 38.89 1.90
929 934 3.708220 CTGTCGCCTTCTCCTCGCC 62.708 68.421 0.00 0.00 0.00 5.54
936 941 1.415672 TTTGGGACCTGTCGCCTTCT 61.416 55.000 11.26 0.00 41.25 2.85
940 945 1.671379 GTCTTTGGGACCTGTCGCC 60.671 63.158 11.26 5.16 41.25 5.54
985 990 0.974010 TGGCTGGTAACGGGTCTAGG 60.974 60.000 0.00 0.00 45.89 3.02
1032 1037 1.393539 CGTAATTGGCAGTGACGAAGG 59.606 52.381 14.19 0.00 35.59 3.46
1048 1053 4.110482 GCTCGCTATTTTTCTCTCCGTAA 58.890 43.478 0.00 0.00 0.00 3.18
1052 1057 3.786635 TCTGCTCGCTATTTTTCTCTCC 58.213 45.455 0.00 0.00 0.00 3.71
1053 1058 3.801594 CCTCTGCTCGCTATTTTTCTCTC 59.198 47.826 0.00 0.00 0.00 3.20
1097 1111 1.999071 CTGCTCGTCTCCCGGAGAAG 61.999 65.000 19.14 20.15 40.59 2.85
1123 1137 0.180406 AACCTGACGCTGTGAAACCT 59.820 50.000 0.00 0.00 34.36 3.50
1126 1140 0.934496 CGAAACCTGACGCTGTGAAA 59.066 50.000 0.00 0.00 0.00 2.69
1129 1143 0.874175 TGACGAAACCTGACGCTGTG 60.874 55.000 0.00 0.00 0.00 3.66
1132 1146 1.148310 CATTGACGAAACCTGACGCT 58.852 50.000 0.00 0.00 0.00 5.07
1168 1182 7.164230 AGTATAGACAAACCTCTGAGAGTTG 57.836 40.000 8.88 9.69 0.00 3.16
1186 1200 9.295825 AGAGACTGGAAAGATGATGTAGTATAG 57.704 37.037 0.00 0.00 0.00 1.31
1187 1201 9.290988 GAGAGACTGGAAAGATGATGTAGTATA 57.709 37.037 0.00 0.00 0.00 1.47
1188 1202 7.782168 TGAGAGACTGGAAAGATGATGTAGTAT 59.218 37.037 0.00 0.00 0.00 2.12
1189 1203 7.119387 TGAGAGACTGGAAAGATGATGTAGTA 58.881 38.462 0.00 0.00 0.00 1.82
1190 1204 5.954752 TGAGAGACTGGAAAGATGATGTAGT 59.045 40.000 0.00 0.00 0.00 2.73
1227 1241 0.386352 CGCAACAACGGAGAGTACGA 60.386 55.000 0.00 0.00 34.93 3.43
1228 1242 1.941476 GCGCAACAACGGAGAGTACG 61.941 60.000 0.30 0.00 37.36 3.67
1229 1243 0.942410 TGCGCAACAACGGAGAGTAC 60.942 55.000 8.16 0.00 0.00 2.73
1230 1244 0.942410 GTGCGCAACAACGGAGAGTA 60.942 55.000 14.00 0.00 32.64 2.59
1231 1245 2.108157 TGCGCAACAACGGAGAGT 59.892 55.556 8.16 0.00 0.00 3.24
1250 1264 1.080705 CACTCGAAGTCCACGTCCC 60.081 63.158 0.00 0.00 0.00 4.46
1255 1269 4.436242 TGATAAGACACTCGAAGTCCAC 57.564 45.455 12.56 4.82 36.68 4.02
1260 1275 5.061560 GCAGAAGTTGATAAGACACTCGAAG 59.938 44.000 0.00 0.00 0.00 3.79
1277 1292 1.081892 GCACATCATGACGCAGAAGT 58.918 50.000 0.00 0.00 0.00 3.01
1293 1308 4.367023 TACCCACGTCGGCAGCAC 62.367 66.667 0.00 0.00 0.00 4.40
1303 1318 0.108329 CCAGCTAACCTGTACCCACG 60.108 60.000 0.00 0.00 40.06 4.94
1304 1319 0.981943 ACCAGCTAACCTGTACCCAC 59.018 55.000 0.00 0.00 40.06 4.61
2142 2169 3.101209 CCCGATCATGGCACGTTG 58.899 61.111 0.00 0.00 0.00 4.10
2215 2242 9.556030 GGTGATGCTCTTTTATAACTGTTTAAC 57.444 33.333 0.00 0.00 0.00 2.01
2216 2243 8.736244 GGGTGATGCTCTTTTATAACTGTTTAA 58.264 33.333 0.00 0.00 0.00 1.52
2217 2244 8.107095 AGGGTGATGCTCTTTTATAACTGTTTA 58.893 33.333 0.00 0.00 0.00 2.01
2218 2245 6.948309 AGGGTGATGCTCTTTTATAACTGTTT 59.052 34.615 0.00 0.00 0.00 2.83
2219 2246 6.485171 AGGGTGATGCTCTTTTATAACTGTT 58.515 36.000 0.00 0.00 0.00 3.16
2220 2247 6.067217 AGGGTGATGCTCTTTTATAACTGT 57.933 37.500 0.00 0.00 0.00 3.55
2221 2248 8.682936 ATTAGGGTGATGCTCTTTTATAACTG 57.317 34.615 0.00 0.00 0.00 3.16
2222 2249 9.700831 AAATTAGGGTGATGCTCTTTTATAACT 57.299 29.630 0.00 0.00 0.00 2.24
2223 2250 9.952188 GAAATTAGGGTGATGCTCTTTTATAAC 57.048 33.333 0.00 0.00 0.00 1.89
2224 2251 9.693739 TGAAATTAGGGTGATGCTCTTTTATAA 57.306 29.630 0.00 0.00 0.00 0.98
2225 2252 9.342308 CTGAAATTAGGGTGATGCTCTTTTATA 57.658 33.333 0.00 0.00 0.00 0.98
2226 2253 7.836183 ACTGAAATTAGGGTGATGCTCTTTTAT 59.164 33.333 0.00 0.00 0.00 1.40
2227 2254 7.175104 ACTGAAATTAGGGTGATGCTCTTTTA 58.825 34.615 0.00 0.00 0.00 1.52
2230 2257 5.184892 ACTGAAATTAGGGTGATGCTCTT 57.815 39.130 0.00 0.00 0.00 2.85
2237 2264 6.542821 AGTTGATGAACTGAAATTAGGGTGA 58.457 36.000 0.00 0.00 41.12 4.02
2251 2278 8.221766 CGAGGAACTTAAGTTTAGTTGATGAAC 58.778 37.037 21.40 4.75 41.55 3.18
2274 2301 9.383462 GCTGTACGTGGATATATAATTATCGAG 57.617 37.037 0.00 0.00 30.69 4.04
2294 2321 4.559153 TGTAAACCCTTTCGTAGCTGTAC 58.441 43.478 0.00 0.00 0.00 2.90
2295 2322 4.870123 TGTAAACCCTTTCGTAGCTGTA 57.130 40.909 0.00 0.00 0.00 2.74
2296 2323 3.756933 TGTAAACCCTTTCGTAGCTGT 57.243 42.857 0.00 0.00 0.00 4.40
2297 2324 6.761714 AGATTATGTAAACCCTTTCGTAGCTG 59.238 38.462 0.00 0.00 0.00 4.24
2298 2325 6.885922 AGATTATGTAAACCCTTTCGTAGCT 58.114 36.000 0.00 0.00 0.00 3.32
2299 2326 7.254692 GGAAGATTATGTAAACCCTTTCGTAGC 60.255 40.741 0.00 0.00 0.00 3.58
2300 2327 7.985752 AGGAAGATTATGTAAACCCTTTCGTAG 59.014 37.037 0.00 0.00 0.00 3.51
2301 2328 7.854337 AGGAAGATTATGTAAACCCTTTCGTA 58.146 34.615 0.00 0.00 0.00 3.43
2302 2329 6.718294 AGGAAGATTATGTAAACCCTTTCGT 58.282 36.000 0.00 0.00 0.00 3.85
2303 2330 8.726870 TTAGGAAGATTATGTAAACCCTTTCG 57.273 34.615 0.00 0.00 0.00 3.46
2318 2345 8.379331 GGGCAGAGAAGTATATTTAGGAAGATT 58.621 37.037 0.00 0.00 0.00 2.40
2319 2346 7.037945 GGGGCAGAGAAGTATATTTAGGAAGAT 60.038 40.741 0.00 0.00 0.00 2.40
2320 2347 6.270231 GGGGCAGAGAAGTATATTTAGGAAGA 59.730 42.308 0.00 0.00 0.00 2.87
2321 2348 6.468543 GGGGCAGAGAAGTATATTTAGGAAG 58.531 44.000 0.00 0.00 0.00 3.46
2322 2349 5.309806 GGGGGCAGAGAAGTATATTTAGGAA 59.690 44.000 0.00 0.00 0.00 3.36
2323 2350 4.844655 GGGGGCAGAGAAGTATATTTAGGA 59.155 45.833 0.00 0.00 0.00 2.94
2324 2351 5.167303 GGGGGCAGAGAAGTATATTTAGG 57.833 47.826 0.00 0.00 0.00 2.69
2347 2374 1.549203 CCCACCCACCTGAAAATCAG 58.451 55.000 0.32 0.32 43.91 2.90
2348 2375 0.114168 CCCCACCCACCTGAAAATCA 59.886 55.000 0.00 0.00 0.00 2.57
2349 2376 1.257750 GCCCCACCCACCTGAAAATC 61.258 60.000 0.00 0.00 0.00 2.17
2350 2377 1.229177 GCCCCACCCACCTGAAAAT 60.229 57.895 0.00 0.00 0.00 1.82
2351 2378 2.200092 GCCCCACCCACCTGAAAA 59.800 61.111 0.00 0.00 0.00 2.29
2352 2379 3.909651 GGCCCCACCCACCTGAAA 61.910 66.667 0.00 0.00 0.00 2.69
2361 2388 4.062032 GGAGAAAGGGGCCCCACC 62.062 72.222 42.48 29.30 38.92 4.61
2362 2389 2.941583 AGGAGAAAGGGGCCCCAC 60.942 66.667 42.48 30.25 38.92 4.61
2363 2390 2.614013 GAGGAGAAAGGGGCCCCA 60.614 66.667 42.48 0.00 38.92 4.96
2364 2391 3.421386 GGAGGAGAAAGGGGCCCC 61.421 72.222 35.90 35.90 0.00 5.80
2365 2392 1.927569 GAAGGAGGAGAAAGGGGCCC 61.928 65.000 17.12 17.12 0.00 5.80
2366 2393 1.610327 GAAGGAGGAGAAAGGGGCC 59.390 63.158 0.00 0.00 0.00 5.80
2367 2394 1.610327 GGAAGGAGGAGAAAGGGGC 59.390 63.158 0.00 0.00 0.00 5.80
2368 2395 1.627297 CGGGAAGGAGGAGAAAGGGG 61.627 65.000 0.00 0.00 0.00 4.79
2369 2396 1.627297 CCGGGAAGGAGGAGAAAGGG 61.627 65.000 0.00 0.00 45.00 3.95
2370 2397 1.908483 CCGGGAAGGAGGAGAAAGG 59.092 63.158 0.00 0.00 45.00 3.11
2371 2398 1.222113 GCCGGGAAGGAGGAGAAAG 59.778 63.158 2.18 0.00 45.00 2.62
2372 2399 0.840722 AAGCCGGGAAGGAGGAGAAA 60.841 55.000 2.18 0.00 45.00 2.52
2373 2400 1.229529 AAGCCGGGAAGGAGGAGAA 60.230 57.895 2.18 0.00 45.00 2.87
2374 2401 1.686110 GAAGCCGGGAAGGAGGAGA 60.686 63.158 2.18 0.00 45.00 3.71
2375 2402 2.736826 GGAAGCCGGGAAGGAGGAG 61.737 68.421 2.18 0.00 45.00 3.69
2376 2403 2.687566 GGAAGCCGGGAAGGAGGA 60.688 66.667 2.18 0.00 45.00 3.71
2377 2404 3.798511 GGGAAGCCGGGAAGGAGG 61.799 72.222 2.18 0.00 45.00 4.30
2378 2405 3.798511 GGGGAAGCCGGGAAGGAG 61.799 72.222 2.18 0.00 45.00 3.69
2379 2406 4.667935 TGGGGAAGCCGGGAAGGA 62.668 66.667 2.18 0.00 45.00 3.36
2380 2407 2.996330 ATTGGGGAAGCCGGGAAGG 61.996 63.158 2.18 0.00 44.97 3.46
2381 2408 1.754234 CATTGGGGAAGCCGGGAAG 60.754 63.158 2.18 0.00 0.00 3.46
2382 2409 1.580066 ATCATTGGGGAAGCCGGGAA 61.580 55.000 2.18 0.00 0.00 3.97
2383 2410 1.994885 GATCATTGGGGAAGCCGGGA 61.995 60.000 2.18 0.00 0.00 5.14
2384 2411 1.529244 GATCATTGGGGAAGCCGGG 60.529 63.158 2.18 0.00 0.00 5.73
2385 2412 0.178981 ATGATCATTGGGGAAGCCGG 60.179 55.000 1.18 0.00 0.00 6.13
2386 2413 1.696063 AATGATCATTGGGGAAGCCG 58.304 50.000 20.11 0.00 0.00 5.52
2387 2414 2.560105 GCTAATGATCATTGGGGAAGCC 59.440 50.000 27.59 9.56 31.00 4.35
2388 2415 2.560105 GGCTAATGATCATTGGGGAAGC 59.440 50.000 27.59 25.18 31.00 3.86
2389 2416 3.571401 GTGGCTAATGATCATTGGGGAAG 59.429 47.826 27.59 18.19 31.00 3.46
2390 2417 3.565307 GTGGCTAATGATCATTGGGGAA 58.435 45.455 27.59 9.14 31.00 3.97
2391 2418 2.487086 CGTGGCTAATGATCATTGGGGA 60.487 50.000 27.59 9.49 31.00 4.81
2392 2419 1.881973 CGTGGCTAATGATCATTGGGG 59.118 52.381 27.59 18.32 31.00 4.96
2393 2420 2.575532 ACGTGGCTAATGATCATTGGG 58.424 47.619 27.59 20.41 31.00 4.12
2394 2421 3.793129 GCAACGTGGCTAATGATCATTGG 60.793 47.826 27.59 25.46 33.13 3.16
2395 2422 3.065786 AGCAACGTGGCTAATGATCATTG 59.934 43.478 27.59 18.59 43.70 2.82
2396 2423 3.282021 AGCAACGTGGCTAATGATCATT 58.718 40.909 23.75 23.75 43.70 2.57
2397 2424 2.923121 AGCAACGTGGCTAATGATCAT 58.077 42.857 17.95 1.18 43.70 2.45
2398 2425 2.401583 AGCAACGTGGCTAATGATCA 57.598 45.000 17.95 0.00 43.70 2.92
2428 2455 9.829507 ACACTTATGTAGAGATAGTTACGTACT 57.170 33.333 0.00 0.00 37.26 2.73
2445 2472 9.367444 GAACTTACAGTAATGCTACACTTATGT 57.633 33.333 0.00 0.00 43.30 2.29
2446 2473 9.587772 AGAACTTACAGTAATGCTACACTTATG 57.412 33.333 0.00 0.00 0.00 1.90
2448 2475 9.419297 CAAGAACTTACAGTAATGCTACACTTA 57.581 33.333 0.00 0.00 0.00 2.24
2449 2476 7.095187 GCAAGAACTTACAGTAATGCTACACTT 60.095 37.037 8.12 0.00 32.17 3.16
2450 2477 6.369065 GCAAGAACTTACAGTAATGCTACACT 59.631 38.462 8.12 0.00 32.17 3.55
2451 2478 6.147164 TGCAAGAACTTACAGTAATGCTACAC 59.853 38.462 14.18 0.00 34.40 2.90
2452 2479 6.147164 GTGCAAGAACTTACAGTAATGCTACA 59.853 38.462 14.18 4.27 34.40 2.74
2453 2480 6.402226 GGTGCAAGAACTTACAGTAATGCTAC 60.402 42.308 14.18 11.00 34.40 3.58
2454 2481 5.642063 GGTGCAAGAACTTACAGTAATGCTA 59.358 40.000 14.18 2.42 34.40 3.49
2455 2482 4.455877 GGTGCAAGAACTTACAGTAATGCT 59.544 41.667 14.18 2.04 34.40 3.79
2456 2483 4.669197 CGGTGCAAGAACTTACAGTAATGC 60.669 45.833 8.37 8.37 34.10 3.56
2457 2484 4.688879 TCGGTGCAAGAACTTACAGTAATG 59.311 41.667 0.00 0.00 0.00 1.90
2458 2485 4.890088 TCGGTGCAAGAACTTACAGTAAT 58.110 39.130 0.00 0.00 0.00 1.89
2459 2486 4.325028 TCGGTGCAAGAACTTACAGTAA 57.675 40.909 0.00 0.00 0.00 2.24
2460 2487 4.021807 TCATCGGTGCAAGAACTTACAGTA 60.022 41.667 0.00 0.00 0.00 2.74
2461 2488 2.902705 TCGGTGCAAGAACTTACAGT 57.097 45.000 0.00 0.00 0.00 3.55
2462 2489 3.325870 TCATCGGTGCAAGAACTTACAG 58.674 45.455 0.00 0.00 0.00 2.74
2463 2490 3.394674 TCATCGGTGCAAGAACTTACA 57.605 42.857 0.00 0.00 0.00 2.41
2464 2491 3.485877 GCATCATCGGTGCAAGAACTTAC 60.486 47.826 0.00 0.00 42.08 2.34
2465 2492 2.677836 GCATCATCGGTGCAAGAACTTA 59.322 45.455 0.00 0.00 42.08 2.24
2466 2493 1.470098 GCATCATCGGTGCAAGAACTT 59.530 47.619 0.00 0.00 42.08 2.66
2467 2494 1.089920 GCATCATCGGTGCAAGAACT 58.910 50.000 0.00 0.00 42.08 3.01
2468 2495 1.063174 GAGCATCATCGGTGCAAGAAC 59.937 52.381 1.56 0.00 44.87 3.01
2469 2496 1.372582 GAGCATCATCGGTGCAAGAA 58.627 50.000 1.56 0.00 44.87 2.52
2470 2497 0.462581 GGAGCATCATCGGTGCAAGA 60.463 55.000 1.56 0.00 44.87 3.02
2471 2498 0.745486 TGGAGCATCATCGGTGCAAG 60.745 55.000 1.56 0.00 44.87 4.01
2472 2499 0.107066 ATGGAGCATCATCGGTGCAA 60.107 50.000 1.56 0.00 44.87 4.08
2473 2500 0.533531 GATGGAGCATCATCGGTGCA 60.534 55.000 1.56 0.00 44.87 4.57
2474 2501 0.250209 AGATGGAGCATCATCGGTGC 60.250 55.000 11.80 0.00 45.88 5.01
2475 2502 3.195182 AGATAGATGGAGCATCATCGGTG 59.805 47.826 11.80 0.00 45.88 4.94
2476 2503 3.439154 AGATAGATGGAGCATCATCGGT 58.561 45.455 11.80 6.47 45.88 4.69
2477 2504 5.301298 TCATAGATAGATGGAGCATCATCGG 59.699 44.000 11.80 0.00 45.88 4.18
2478 2505 6.388435 TCATAGATAGATGGAGCATCATCG 57.612 41.667 11.80 0.00 45.88 3.84
2479 2506 8.009622 TCTTCATAGATAGATGGAGCATCATC 57.990 38.462 10.22 10.22 42.72 2.92
2480 2507 7.974730 TCTTCATAGATAGATGGAGCATCAT 57.025 36.000 0.00 0.00 42.72 2.45
2481 2508 7.787623 TTCTTCATAGATAGATGGAGCATCA 57.212 36.000 0.00 0.00 42.72 3.07
2482 2509 8.934825 GTTTTCTTCATAGATAGATGGAGCATC 58.065 37.037 0.00 0.00 40.80 3.91
2483 2510 8.658619 AGTTTTCTTCATAGATAGATGGAGCAT 58.341 33.333 0.00 0.00 33.04 3.79
2484 2511 8.027524 AGTTTTCTTCATAGATAGATGGAGCA 57.972 34.615 0.00 0.00 33.04 4.26
2485 2512 9.418045 GTAGTTTTCTTCATAGATAGATGGAGC 57.582 37.037 0.00 0.00 33.04 4.70
2486 2513 9.921637 GGTAGTTTTCTTCATAGATAGATGGAG 57.078 37.037 0.00 0.00 34.16 3.86
2487 2514 9.661954 AGGTAGTTTTCTTCATAGATAGATGGA 57.338 33.333 0.00 0.00 0.00 3.41
2506 2533 9.544579 AGAGAGGTTACATTACTTTAGGTAGTT 57.455 33.333 0.00 0.00 0.00 2.24
2510 2537 8.756927 GGTTAGAGAGGTTACATTACTTTAGGT 58.243 37.037 0.00 0.00 0.00 3.08
2511 2538 8.755977 TGGTTAGAGAGGTTACATTACTTTAGG 58.244 37.037 0.00 0.00 0.00 2.69
2520 2547 9.440761 AGAGAATTATGGTTAGAGAGGTTACAT 57.559 33.333 0.00 0.00 0.00 2.29
2521 2548 8.840200 AGAGAATTATGGTTAGAGAGGTTACA 57.160 34.615 0.00 0.00 0.00 2.41
2522 2549 9.138596 AGAGAGAATTATGGTTAGAGAGGTTAC 57.861 37.037 0.00 0.00 0.00 2.50
2523 2550 9.357161 GAGAGAGAATTATGGTTAGAGAGGTTA 57.643 37.037 0.00 0.00 0.00 2.85
2524 2551 7.289084 GGAGAGAGAATTATGGTTAGAGAGGTT 59.711 40.741 0.00 0.00 0.00 3.50
2525 2552 6.780522 GGAGAGAGAATTATGGTTAGAGAGGT 59.219 42.308 0.00 0.00 0.00 3.85
2526 2553 6.072175 CGGAGAGAGAATTATGGTTAGAGAGG 60.072 46.154 0.00 0.00 0.00 3.69
2527 2554 6.569610 GCGGAGAGAGAATTATGGTTAGAGAG 60.570 46.154 0.00 0.00 0.00 3.20
2528 2555 5.241949 GCGGAGAGAGAATTATGGTTAGAGA 59.758 44.000 0.00 0.00 0.00 3.10
2529 2556 5.465935 GCGGAGAGAGAATTATGGTTAGAG 58.534 45.833 0.00 0.00 0.00 2.43
2530 2557 4.281182 GGCGGAGAGAGAATTATGGTTAGA 59.719 45.833 0.00 0.00 0.00 2.10
2531 2558 4.282195 AGGCGGAGAGAGAATTATGGTTAG 59.718 45.833 0.00 0.00 0.00 2.34
2532 2559 4.039245 CAGGCGGAGAGAGAATTATGGTTA 59.961 45.833 0.00 0.00 0.00 2.85
2533 2560 3.041946 AGGCGGAGAGAGAATTATGGTT 58.958 45.455 0.00 0.00 0.00 3.67
2534 2561 2.366916 CAGGCGGAGAGAGAATTATGGT 59.633 50.000 0.00 0.00 0.00 3.55
2535 2562 2.630098 TCAGGCGGAGAGAGAATTATGG 59.370 50.000 0.00 0.00 0.00 2.74
2536 2563 4.533919 ATCAGGCGGAGAGAGAATTATG 57.466 45.455 0.00 0.00 0.00 1.90
2537 2564 5.070981 TCAAATCAGGCGGAGAGAGAATTAT 59.929 40.000 0.00 0.00 0.00 1.28
2538 2565 4.405680 TCAAATCAGGCGGAGAGAGAATTA 59.594 41.667 0.00 0.00 0.00 1.40
2539 2566 3.198635 TCAAATCAGGCGGAGAGAGAATT 59.801 43.478 0.00 0.00 0.00 2.17
2540 2567 2.768527 TCAAATCAGGCGGAGAGAGAAT 59.231 45.455 0.00 0.00 0.00 2.40
2541 2568 2.167281 CTCAAATCAGGCGGAGAGAGAA 59.833 50.000 7.61 0.00 0.00 2.87
2542 2569 1.753649 CTCAAATCAGGCGGAGAGAGA 59.246 52.381 7.61 0.00 0.00 3.10
2543 2570 1.805871 GCTCAAATCAGGCGGAGAGAG 60.806 57.143 6.58 7.67 0.00 3.20
2544 2571 0.176680 GCTCAAATCAGGCGGAGAGA 59.823 55.000 6.58 0.00 0.00 3.10
2545 2572 0.107993 TGCTCAAATCAGGCGGAGAG 60.108 55.000 0.00 0.00 0.00 3.20
2546 2573 0.324614 TTGCTCAAATCAGGCGGAGA 59.675 50.000 0.00 0.00 0.00 3.71
2547 2574 1.065102 CATTGCTCAAATCAGGCGGAG 59.935 52.381 0.00 0.00 0.00 4.63
2548 2575 1.097232 CATTGCTCAAATCAGGCGGA 58.903 50.000 0.00 0.00 0.00 5.54
2549 2576 0.526954 GCATTGCTCAAATCAGGCGG 60.527 55.000 0.16 0.00 0.00 6.13
2550 2577 0.454600 AGCATTGCTCAAATCAGGCG 59.545 50.000 5.03 0.00 30.62 5.52
2551 2578 2.424601 TGTAGCATTGCTCAAATCAGGC 59.575 45.455 15.81 0.00 40.44 4.85
2552 2579 4.913335 ATGTAGCATTGCTCAAATCAGG 57.087 40.909 15.81 0.00 40.44 3.86
2553 2580 7.116805 TCGTATATGTAGCATTGCTCAAATCAG 59.883 37.037 15.81 2.58 40.44 2.90
2554 2581 6.928492 TCGTATATGTAGCATTGCTCAAATCA 59.072 34.615 15.81 8.37 40.44 2.57
2555 2582 7.351414 TCGTATATGTAGCATTGCTCAAATC 57.649 36.000 15.81 3.00 40.44 2.17
2556 2583 7.657354 TCTTCGTATATGTAGCATTGCTCAAAT 59.343 33.333 15.81 9.79 40.44 2.32
2557 2584 6.983890 TCTTCGTATATGTAGCATTGCTCAAA 59.016 34.615 15.81 2.25 40.44 2.69
2558 2585 6.512297 TCTTCGTATATGTAGCATTGCTCAA 58.488 36.000 15.81 4.98 40.44 3.02
2559 2586 6.084326 TCTTCGTATATGTAGCATTGCTCA 57.916 37.500 15.81 13.12 40.44 4.26
2560 2587 5.061560 GCTCTTCGTATATGTAGCATTGCTC 59.938 44.000 15.81 7.72 40.44 4.26
2561 2588 4.926238 GCTCTTCGTATATGTAGCATTGCT 59.074 41.667 16.63 16.63 43.41 3.91
2562 2589 4.926238 AGCTCTTCGTATATGTAGCATTGC 59.074 41.667 0.00 0.00 32.42 3.56
2563 2590 6.249471 CGTAGCTCTTCGTATATGTAGCATTG 59.751 42.308 14.64 4.76 32.42 2.82
2564 2591 6.072618 ACGTAGCTCTTCGTATATGTAGCATT 60.073 38.462 9.21 3.38 38.52 3.56
2565 2592 5.411977 ACGTAGCTCTTCGTATATGTAGCAT 59.588 40.000 9.21 0.00 38.52 3.79
2566 2593 4.753610 ACGTAGCTCTTCGTATATGTAGCA 59.246 41.667 9.21 0.00 38.52 3.49
2567 2594 5.280328 ACGTAGCTCTTCGTATATGTAGC 57.720 43.478 9.21 7.97 38.52 3.58
2568 2595 6.885247 TGAACGTAGCTCTTCGTATATGTAG 58.115 40.000 10.89 0.00 39.39 2.74
2569 2596 6.481313 ACTGAACGTAGCTCTTCGTATATGTA 59.519 38.462 10.89 0.00 39.39 2.29
2570 2597 5.296283 ACTGAACGTAGCTCTTCGTATATGT 59.704 40.000 10.89 6.54 39.39 2.29
2571 2598 5.749620 ACTGAACGTAGCTCTTCGTATATG 58.250 41.667 10.89 6.08 39.39 1.78
2572 2599 6.374565 AACTGAACGTAGCTCTTCGTATAT 57.625 37.500 10.89 0.00 39.39 0.86
2573 2600 5.808042 AACTGAACGTAGCTCTTCGTATA 57.192 39.130 10.89 4.35 39.39 1.47
2574 2601 4.698583 AACTGAACGTAGCTCTTCGTAT 57.301 40.909 10.89 3.76 39.39 3.06
2575 2602 4.494350 AAACTGAACGTAGCTCTTCGTA 57.506 40.909 10.89 0.00 39.39 3.43
2576 2603 3.366440 AAACTGAACGTAGCTCTTCGT 57.634 42.857 0.00 0.00 42.12 3.85
2577 2604 4.201372 CGTAAAACTGAACGTAGCTCTTCG 60.201 45.833 0.00 0.00 34.48 3.79
2578 2605 5.174807 CGTAAAACTGAACGTAGCTCTTC 57.825 43.478 0.00 0.00 34.48 2.87
2587 2614 4.150980 TGGCTAATCACGTAAAACTGAACG 59.849 41.667 0.00 0.00 44.47 3.95
2588 2615 5.178809 AGTGGCTAATCACGTAAAACTGAAC 59.821 40.000 0.00 0.00 42.10 3.18
2589 2616 5.302360 AGTGGCTAATCACGTAAAACTGAA 58.698 37.500 0.00 0.00 42.10 3.02
2590 2617 4.890088 AGTGGCTAATCACGTAAAACTGA 58.110 39.130 0.00 0.00 42.10 3.41
2591 2618 5.382303 CAAGTGGCTAATCACGTAAAACTG 58.618 41.667 0.00 0.00 42.10 3.16
2592 2619 4.454504 CCAAGTGGCTAATCACGTAAAACT 59.545 41.667 0.00 0.00 42.10 2.66
2593 2620 4.719040 CCAAGTGGCTAATCACGTAAAAC 58.281 43.478 0.00 0.00 42.10 2.43
2608 2635 5.850557 TCCAATTATACATTGCCAAGTGG 57.149 39.130 0.00 0.00 37.45 4.00
2609 2636 6.866480 ACTTCCAATTATACATTGCCAAGTG 58.134 36.000 14.23 0.00 33.33 3.16
2610 2637 7.285401 CCTACTTCCAATTATACATTGCCAAGT 59.715 37.037 16.48 16.48 36.03 3.16
2611 2638 7.255590 CCCTACTTCCAATTATACATTGCCAAG 60.256 40.741 0.00 0.00 0.00 3.61
2612 2639 6.549364 CCCTACTTCCAATTATACATTGCCAA 59.451 38.462 0.00 0.00 0.00 4.52
2613 2640 6.068010 CCCTACTTCCAATTATACATTGCCA 58.932 40.000 0.00 0.00 0.00 4.92
2614 2641 5.476945 CCCCTACTTCCAATTATACATTGCC 59.523 44.000 0.00 0.00 0.00 4.52
2615 2642 5.476945 CCCCCTACTTCCAATTATACATTGC 59.523 44.000 0.00 0.00 0.00 3.56
2648 2675 3.406595 GAGGATTGAGGGGCCCACG 62.407 68.421 27.72 0.00 0.00 4.94
2649 2676 2.003548 AGAGGATTGAGGGGCCCAC 61.004 63.158 27.72 20.67 0.00 4.61
2650 2677 2.002977 CAGAGGATTGAGGGGCCCA 61.003 63.158 27.72 3.88 0.00 5.36
2651 2678 1.694169 TCAGAGGATTGAGGGGCCC 60.694 63.158 17.12 17.12 0.00 5.80
2652 2679 1.274703 TGTCAGAGGATTGAGGGGCC 61.275 60.000 0.00 0.00 0.00 5.80
2653 2680 0.842635 ATGTCAGAGGATTGAGGGGC 59.157 55.000 0.00 0.00 0.00 5.80
2654 2681 2.507058 TGAATGTCAGAGGATTGAGGGG 59.493 50.000 0.00 0.00 0.00 4.79
2655 2682 3.920231 TGAATGTCAGAGGATTGAGGG 57.080 47.619 0.00 0.00 0.00 4.30
2656 2683 4.820716 GGATTGAATGTCAGAGGATTGAGG 59.179 45.833 0.00 0.00 0.00 3.86
2657 2684 5.682659 AGGATTGAATGTCAGAGGATTGAG 58.317 41.667 0.00 0.00 0.00 3.02
2658 2685 5.705397 AGGATTGAATGTCAGAGGATTGA 57.295 39.130 0.00 0.00 0.00 2.57
2659 2686 6.590068 AGTAGGATTGAATGTCAGAGGATTG 58.410 40.000 0.00 0.00 0.00 2.67
2660 2687 6.821616 AGTAGGATTGAATGTCAGAGGATT 57.178 37.500 0.00 0.00 0.00 3.01
2661 2688 6.821616 AAGTAGGATTGAATGTCAGAGGAT 57.178 37.500 0.00 0.00 0.00 3.24
2662 2689 7.015682 GGATAAGTAGGATTGAATGTCAGAGGA 59.984 40.741 0.00 0.00 0.00 3.71
2663 2690 7.158021 GGATAAGTAGGATTGAATGTCAGAGG 58.842 42.308 0.00 0.00 0.00 3.69
2664 2691 7.655328 GTGGATAAGTAGGATTGAATGTCAGAG 59.345 40.741 0.00 0.00 0.00 3.35
2665 2692 7.500992 GTGGATAAGTAGGATTGAATGTCAGA 58.499 38.462 0.00 0.00 0.00 3.27
2666 2693 6.422100 CGTGGATAAGTAGGATTGAATGTCAG 59.578 42.308 0.00 0.00 0.00 3.51
2667 2694 6.127168 ACGTGGATAAGTAGGATTGAATGTCA 60.127 38.462 0.00 0.00 0.00 3.58
2668 2695 6.281405 ACGTGGATAAGTAGGATTGAATGTC 58.719 40.000 0.00 0.00 0.00 3.06
2669 2696 6.235231 ACGTGGATAAGTAGGATTGAATGT 57.765 37.500 0.00 0.00 0.00 2.71
2670 2697 6.017934 CCAACGTGGATAAGTAGGATTGAATG 60.018 42.308 0.00 0.00 40.96 2.67
2671 2698 6.055588 CCAACGTGGATAAGTAGGATTGAAT 58.944 40.000 0.00 0.00 40.96 2.57
2672 2699 5.046159 ACCAACGTGGATAAGTAGGATTGAA 60.046 40.000 10.46 0.00 40.96 2.69
2673 2700 4.468510 ACCAACGTGGATAAGTAGGATTGA 59.531 41.667 10.46 0.00 40.96 2.57
2674 2701 4.766375 ACCAACGTGGATAAGTAGGATTG 58.234 43.478 10.46 0.00 40.96 2.67
2675 2702 5.431179 AACCAACGTGGATAAGTAGGATT 57.569 39.130 10.46 0.00 40.96 3.01
2676 2703 6.742559 ATAACCAACGTGGATAAGTAGGAT 57.257 37.500 10.46 0.00 40.96 3.24
2677 2704 6.549433 AATAACCAACGTGGATAAGTAGGA 57.451 37.500 10.46 0.00 40.96 2.94
2678 2705 7.929785 ACATAATAACCAACGTGGATAAGTAGG 59.070 37.037 10.46 5.37 40.96 3.18
2679 2706 8.882415 ACATAATAACCAACGTGGATAAGTAG 57.118 34.615 10.46 0.75 40.96 2.57
2681 2708 9.321562 CTTACATAATAACCAACGTGGATAAGT 57.678 33.333 10.46 4.98 40.96 2.24
2682 2709 8.770828 CCTTACATAATAACCAACGTGGATAAG 58.229 37.037 10.46 0.00 40.96 1.73
2683 2710 8.266473 ACCTTACATAATAACCAACGTGGATAA 58.734 33.333 10.46 0.00 40.96 1.75
2684 2711 7.794041 ACCTTACATAATAACCAACGTGGATA 58.206 34.615 10.46 4.22 40.96 2.59
2685 2712 6.655930 ACCTTACATAATAACCAACGTGGAT 58.344 36.000 10.46 2.21 40.96 3.41
2686 2713 6.052405 ACCTTACATAATAACCAACGTGGA 57.948 37.500 10.46 0.00 40.96 4.02
2687 2714 9.715121 ATATACCTTACATAATAACCAACGTGG 57.285 33.333 0.00 0.00 45.02 4.94
2712 2739 9.723601 TCCCTACACTTACGTAAAAATTGTTAT 57.276 29.630 9.68 0.00 0.00 1.89
2713 2740 9.553064 TTCCCTACACTTACGTAAAAATTGTTA 57.447 29.630 9.68 0.00 0.00 2.41
2714 2741 8.449251 TTCCCTACACTTACGTAAAAATTGTT 57.551 30.769 9.68 0.00 0.00 2.83
2715 2742 7.716560 ACTTCCCTACACTTACGTAAAAATTGT 59.283 33.333 9.68 11.83 0.00 2.71
2716 2743 8.091385 ACTTCCCTACACTTACGTAAAAATTG 57.909 34.615 9.68 6.86 0.00 2.32
2717 2744 7.933033 TGACTTCCCTACACTTACGTAAAAATT 59.067 33.333 9.68 0.00 0.00 1.82
2718 2745 7.444299 TGACTTCCCTACACTTACGTAAAAAT 58.556 34.615 9.68 0.13 0.00 1.82
2719 2746 6.815089 TGACTTCCCTACACTTACGTAAAAA 58.185 36.000 9.68 0.00 0.00 1.94
2720 2747 6.403866 TGACTTCCCTACACTTACGTAAAA 57.596 37.500 9.68 0.00 0.00 1.52
2721 2748 6.594788 ATGACTTCCCTACACTTACGTAAA 57.405 37.500 9.68 0.00 0.00 2.01
2722 2749 6.095440 GGTATGACTTCCCTACACTTACGTAA 59.905 42.308 7.94 7.94 0.00 3.18
2723 2750 5.590259 GGTATGACTTCCCTACACTTACGTA 59.410 44.000 0.00 0.00 0.00 3.57
2724 2751 4.400567 GGTATGACTTCCCTACACTTACGT 59.599 45.833 0.00 0.00 0.00 3.57
2725 2752 4.202090 GGGTATGACTTCCCTACACTTACG 60.202 50.000 0.00 0.00 40.48 3.18
2726 2753 4.202090 CGGGTATGACTTCCCTACACTTAC 60.202 50.000 0.00 0.00 41.40 2.34
2727 2754 3.956199 CGGGTATGACTTCCCTACACTTA 59.044 47.826 0.00 0.00 41.40 2.24
2728 2755 2.764572 CGGGTATGACTTCCCTACACTT 59.235 50.000 0.00 0.00 41.40 3.16
2729 2756 2.292061 ACGGGTATGACTTCCCTACACT 60.292 50.000 0.00 0.00 41.40 3.55
2730 2757 2.105766 ACGGGTATGACTTCCCTACAC 58.894 52.381 0.00 0.00 41.40 2.90
2731 2758 2.104967 CACGGGTATGACTTCCCTACA 58.895 52.381 0.00 0.00 41.40 2.74
2732 2759 1.411612 CCACGGGTATGACTTCCCTAC 59.588 57.143 0.00 0.00 41.40 3.18
2733 2760 1.288633 TCCACGGGTATGACTTCCCTA 59.711 52.381 0.00 0.00 41.40 3.53
2734 2761 0.042131 TCCACGGGTATGACTTCCCT 59.958 55.000 0.00 0.00 41.40 4.20
2735 2762 0.906775 TTCCACGGGTATGACTTCCC 59.093 55.000 0.00 0.00 40.26 3.97
2738 2765 0.248289 CGGTTCCACGGGTATGACTT 59.752 55.000 0.00 0.00 0.00 3.01
2764 2791 4.537288 AGAGCCCAATCCCAAATTTCAAAT 59.463 37.500 0.00 0.00 0.00 2.32
2783 2810 5.876612 AGTTGATGAAATGACTTGAGAGC 57.123 39.130 0.00 0.00 0.00 4.09
2801 2828 9.916397 CTGTGTGTAAGAACTTAAGTTTAGTTG 57.084 33.333 21.40 2.73 38.56 3.16
2840 2868 3.365265 CAAACCGCCCAGCTCCAC 61.365 66.667 0.00 0.00 0.00 4.02
2841 2869 4.659172 CCAAACCGCCCAGCTCCA 62.659 66.667 0.00 0.00 0.00 3.86
2843 2871 4.344865 TCCCAAACCGCCCAGCTC 62.345 66.667 0.00 0.00 0.00 4.09
2863 2891 3.039011 TGGGGTATTTACTGGAGAGCTC 58.961 50.000 5.27 5.27 0.00 4.09
2865 2893 3.926058 TTGGGGTATTTACTGGAGAGC 57.074 47.619 0.00 0.00 0.00 4.09
2866 2894 5.816682 AGTTTTGGGGTATTTACTGGAGAG 58.183 41.667 0.00 0.00 0.00 3.20
2868 2896 6.482308 CGATAGTTTTGGGGTATTTACTGGAG 59.518 42.308 0.00 0.00 0.00 3.86
2870 2898 5.008316 GCGATAGTTTTGGGGTATTTACTGG 59.992 44.000 0.00 0.00 39.35 4.00
2871 2899 5.820947 AGCGATAGTTTTGGGGTATTTACTG 59.179 40.000 0.00 0.00 39.35 2.74
2872 2900 5.997843 AGCGATAGTTTTGGGGTATTTACT 58.002 37.500 0.00 0.00 39.35 2.24
2873 2901 6.688637 AAGCGATAGTTTTGGGGTATTTAC 57.311 37.500 0.00 0.00 35.33 2.01
2885 2913 4.700213 ACACTGGCATAAAAGCGATAGTTT 59.300 37.500 0.00 0.00 43.17 2.66
2886 2914 4.261801 ACACTGGCATAAAAGCGATAGTT 58.738 39.130 0.00 0.00 39.35 2.24
2887 2915 3.873910 ACACTGGCATAAAAGCGATAGT 58.126 40.909 0.00 0.00 39.35 2.12
2888 2916 4.591202 CAACACTGGCATAAAAGCGATAG 58.409 43.478 0.00 0.00 34.64 2.08
2889 2917 3.181501 GCAACACTGGCATAAAAGCGATA 60.182 43.478 0.00 0.00 34.64 2.92
2890 2918 2.415893 GCAACACTGGCATAAAAGCGAT 60.416 45.455 0.00 0.00 34.64 4.58
2891 2919 1.068610 GCAACACTGGCATAAAAGCGA 60.069 47.619 0.00 0.00 34.64 4.93
2892 2920 1.068333 AGCAACACTGGCATAAAAGCG 60.068 47.619 0.00 0.00 34.64 4.68
2893 2921 2.331194 CAGCAACACTGGCATAAAAGC 58.669 47.619 0.00 0.00 43.19 3.51
2894 2922 7.393681 TTGTTTCAGCAACACTGGCATAAAAG 61.394 38.462 0.00 0.00 45.54 2.27
2895 2923 5.625426 TTGTTTCAGCAACACTGGCATAAAA 60.625 36.000 0.00 0.00 45.54 1.52
2896 2924 4.142071 TTGTTTCAGCAACACTGGCATAAA 60.142 37.500 0.00 0.00 45.54 1.40
2897 2925 3.382865 TTGTTTCAGCAACACTGGCATAA 59.617 39.130 0.00 0.00 45.54 1.90
2898 2926 2.954989 TTGTTTCAGCAACACTGGCATA 59.045 40.909 0.00 0.00 45.54 3.14
2899 2927 1.755959 TTGTTTCAGCAACACTGGCAT 59.244 42.857 0.00 0.00 45.54 4.40
2900 2928 1.180907 TTGTTTCAGCAACACTGGCA 58.819 45.000 0.00 0.00 45.54 4.92
2901 2929 2.223782 TGATTGTTTCAGCAACACTGGC 60.224 45.455 0.00 0.00 45.54 4.85
2902 2930 3.067180 AGTGATTGTTTCAGCAACACTGG 59.933 43.478 0.00 0.00 45.54 4.00
2903 2931 4.297299 AGTGATTGTTTCAGCAACACTG 57.703 40.909 0.00 0.00 45.54 3.66
2904 2932 4.989279 AAGTGATTGTTTCAGCAACACT 57.011 36.364 0.00 0.00 45.54 3.55
2905 2933 6.697019 ACATAAAGTGATTGTTTCAGCAACAC 59.303 34.615 0.00 0.00 45.54 3.32
2921 2949 9.110502 GGAAAGGAGGAAGTATAACATAAAGTG 57.889 37.037 0.00 0.00 0.00 3.16
3039 3075 6.653740 TGATGCCTCTGCTCTTTCATATATTG 59.346 38.462 0.00 0.00 38.71 1.90
3042 3078 5.813513 TGATGCCTCTGCTCTTTCATATA 57.186 39.130 0.00 0.00 38.71 0.86
3046 3082 2.865119 TTGATGCCTCTGCTCTTTCA 57.135 45.000 0.00 0.00 38.71 2.69
3051 3087 1.135460 GCAACTTTGATGCCTCTGCTC 60.135 52.381 0.00 0.00 37.85 4.26
3053 3089 0.886563 AGCAACTTTGATGCCTCTGC 59.113 50.000 0.00 0.00 44.91 4.26
3058 3094 3.248266 GTGATGAAGCAACTTTGATGCC 58.752 45.455 0.00 0.00 44.91 4.40
3064 3100 0.598065 GGCCGTGATGAAGCAACTTT 59.402 50.000 0.00 0.00 0.00 2.66
3069 3105 2.434185 GACGGCCGTGATGAAGCA 60.434 61.111 39.65 0.00 0.00 3.91
3074 3110 0.740868 AGAACATGACGGCCGTGATG 60.741 55.000 43.18 43.18 43.58 3.07
3078 3114 0.250124 TTGAAGAACATGACGGCCGT 60.250 50.000 34.89 34.89 0.00 5.68
3086 3122 6.400834 CGACTCTGTCAATCTTGAAGAACATG 60.401 42.308 0.00 0.00 39.21 3.21
3087 3123 5.636965 CGACTCTGTCAATCTTGAAGAACAT 59.363 40.000 0.00 0.00 39.21 2.71
3115 3152 0.674581 CGTGAGAGGCTTTGATGGCA 60.675 55.000 0.00 0.00 34.73 4.92
3119 3156 1.604378 CCCCGTGAGAGGCTTTGAT 59.396 57.895 0.00 0.00 0.00 2.57
3134 3171 2.158325 TGGATTAAGATTGGATGGCCCC 60.158 50.000 0.00 0.00 0.00 5.80
3145 3182 8.893727 CACCGTTAAAAGAGAATGGATTAAGAT 58.106 33.333 0.72 0.00 36.59 2.40
3150 3187 5.183140 CACCACCGTTAAAAGAGAATGGATT 59.817 40.000 0.72 0.00 36.59 3.01
3154 3191 3.666902 CGCACCACCGTTAAAAGAGAATG 60.667 47.826 0.00 0.00 0.00 2.67
3168 3205 1.896660 TTTTCTCAGGCGCACCACC 60.897 57.895 10.83 0.00 39.06 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.