Multiple sequence alignment - TraesCS3A01G108200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G108200 chr3A 100.000 4583 0 0 1 4583 73617375 73612793 0.000000e+00 8464
1 TraesCS3A01G108200 chr3D 90.907 3706 197 55 466 4118 64084301 64080683 0.000000e+00 4848
2 TraesCS3A01G108200 chr3D 92.130 432 33 1 1 431 166954793 166955224 3.920000e-170 608
3 TraesCS3A01G108200 chr3D 91.071 448 31 4 1 447 121649213 121648774 8.490000e-167 597
4 TraesCS3A01G108200 chr3D 87.589 282 22 12 4118 4386 64079215 64078934 9.570000e-82 315
5 TraesCS3A01G108200 chr3B 89.067 3860 239 89 471 4219 105370703 105366916 0.000000e+00 4621
6 TraesCS3A01G108200 chr6D 92.411 448 30 4 1 447 418227871 418227427 1.800000e-178 636
7 TraesCS3A01G108200 chr7D 90.909 473 34 3 1 472 531052906 531053370 1.080000e-175 627
8 TraesCS3A01G108200 chr7D 88.679 477 43 8 1 475 392825798 392826265 5.140000e-159 571
9 TraesCS3A01G108200 chr7D 90.756 119 11 0 990 1108 60700016 60700134 4.750000e-35 159
10 TraesCS3A01G108200 chr5D 91.964 448 33 3 1 447 483652447 483652002 3.890000e-175 625
11 TraesCS3A01G108200 chr4D 92.130 432 33 1 1 431 69136233 69135802 3.920000e-170 608
12 TraesCS3A01G108200 chr4D 79.922 772 107 33 991 1740 480960584 480961329 1.460000e-144 523
13 TraesCS3A01G108200 chr2D 91.898 432 34 1 1 431 222851273 222851704 1.820000e-168 603
14 TraesCS3A01G108200 chr2D 80.628 382 52 15 1364 1740 473054718 473054354 4.520000e-70 276
15 TraesCS3A01G108200 chr2D 82.748 313 41 12 994 1297 473055056 473054748 2.720000e-67 267
16 TraesCS3A01G108200 chr2D 86.611 239 28 4 1740 1976 473054391 473054155 1.260000e-65 261
17 TraesCS3A01G108200 chr1D 91.667 432 34 2 1 431 260323720 260324150 8.490000e-167 597
18 TraesCS3A01G108200 chr1D 79.351 770 111 34 991 1740 454448743 454449484 8.850000e-137 497
19 TraesCS3A01G108200 chr1D 87.500 240 23 6 1740 1976 454449447 454449682 2.100000e-68 270
20 TraesCS3A01G108200 chr7A 79.581 764 115 31 994 1740 548046238 548045499 4.090000e-140 508
21 TraesCS3A01G108200 chr7A 85.593 236 27 4 1746 1976 548045529 548045296 1.650000e-59 241
22 TraesCS3A01G108200 chr6B 78.598 542 78 23 1208 1740 248325357 248324845 1.590000e-84 324
23 TraesCS3A01G108200 chr4A 88.285 239 21 4 1740 1976 311697960 311697727 3.490000e-71 279
24 TraesCS3A01G108200 chr4A 80.737 353 53 12 994 1337 311698611 311698265 1.260000e-65 261
25 TraesCS3A01G108200 chr4A 81.515 330 43 13 1416 1740 311698239 311697923 5.880000e-64 255
26 TraesCS3A01G108200 chr5B 81.711 339 43 16 991 1316 100018417 100018749 9.780000e-67 265
27 TraesCS3A01G108200 chr5B 80.878 319 45 11 1416 1729 100019085 100019392 2.130000e-58 237
28 TraesCS3A01G108200 chr5B 86.697 218 24 4 1757 1970 100019383 100019599 2.130000e-58 237
29 TraesCS3A01G108200 chr7B 90.756 119 11 0 990 1108 3336857 3336975 4.750000e-35 159


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G108200 chr3A 73612793 73617375 4582 True 8464.000000 8464 100.000000 1 4583 1 chr3A.!!$R1 4582
1 TraesCS3A01G108200 chr3D 64078934 64084301 5367 True 2581.500000 4848 89.248000 466 4386 2 chr3D.!!$R2 3920
2 TraesCS3A01G108200 chr3B 105366916 105370703 3787 True 4621.000000 4621 89.067000 471 4219 1 chr3B.!!$R1 3748
3 TraesCS3A01G108200 chr4D 480960584 480961329 745 False 523.000000 523 79.922000 991 1740 1 chr4D.!!$F1 749
4 TraesCS3A01G108200 chr2D 473054155 473055056 901 True 268.000000 276 83.329000 994 1976 3 chr2D.!!$R1 982
5 TraesCS3A01G108200 chr1D 454448743 454449682 939 False 383.500000 497 83.425500 991 1976 2 chr1D.!!$F2 985
6 TraesCS3A01G108200 chr7A 548045296 548046238 942 True 374.500000 508 82.587000 994 1976 2 chr7A.!!$R1 982
7 TraesCS3A01G108200 chr6B 248324845 248325357 512 True 324.000000 324 78.598000 1208 1740 1 chr6B.!!$R1 532
8 TraesCS3A01G108200 chr4A 311697727 311698611 884 True 265.000000 279 83.512333 994 1976 3 chr4A.!!$R1 982
9 TraesCS3A01G108200 chr5B 100018417 100019599 1182 False 246.333333 265 83.095333 991 1970 3 chr5B.!!$F1 979

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
421 422 0.039617 CTATCTCGAGCGCTGGAAGG 60.040 60.0 22.75 12.49 0.00 3.46 F
1170 1252 0.183492 TACCCATTGATGCTCCCTGC 59.817 55.0 0.00 0.00 43.25 4.85 F
1240 1326 0.606604 TCTCGCTTGTCTGGGTTACC 59.393 55.0 0.00 0.00 37.24 2.85 F
2957 3320 0.723414 CACACTGCCTAGATTGCACG 59.277 55.0 0.00 0.00 34.46 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1649 1993 0.524414 AAAATTACGAAGCCACGGCC 59.476 50.000 3.95 0.0 43.17 6.13 R
2202 2561 0.603569 ACGGCTACAGAAGACCAGTG 59.396 55.000 0.00 0.0 0.00 3.66 R
3008 3371 1.612950 TGCATGCTTGTAACCCACTTG 59.387 47.619 20.33 0.0 0.00 3.16 R
3940 4334 0.178068 CCTAGGCGCAATGTGGTACT 59.822 55.000 10.83 0.0 0.00 2.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.720193 CTCGGGTGTCGACGTCGT 61.720 66.667 34.40 0.00 43.74 4.34
19 20 3.245948 CTCGGGTGTCGACGTCGTT 62.246 63.158 34.40 0.00 43.74 3.85
20 21 2.798262 CGGGTGTCGACGTCGTTC 60.798 66.667 34.40 27.05 42.43 3.95
21 22 2.429739 GGGTGTCGACGTCGTTCC 60.430 66.667 34.40 29.84 40.80 3.62
22 23 2.798262 GGTGTCGACGTCGTTCCG 60.798 66.667 34.40 12.61 40.80 4.30
23 24 2.051882 GTGTCGACGTCGTTCCGT 60.052 61.111 34.40 0.00 45.18 4.69
31 32 3.464545 GTCGTTCCGTCGCCGTTC 61.465 66.667 0.00 0.00 0.00 3.95
32 33 4.705519 TCGTTCCGTCGCCGTTCC 62.706 66.667 0.00 0.00 0.00 3.62
34 35 4.668118 GTTCCGTCGCCGTTCCCA 62.668 66.667 0.00 0.00 0.00 4.37
35 36 4.668118 TTCCGTCGCCGTTCCCAC 62.668 66.667 0.00 0.00 0.00 4.61
73 74 4.227134 CGGAGGACATGGAGGCGG 62.227 72.222 0.00 0.00 0.00 6.13
74 75 2.764128 GGAGGACATGGAGGCGGA 60.764 66.667 0.00 0.00 0.00 5.54
75 76 2.801631 GGAGGACATGGAGGCGGAG 61.802 68.421 0.00 0.00 0.00 4.63
76 77 2.765807 AGGACATGGAGGCGGAGG 60.766 66.667 0.00 0.00 0.00 4.30
87 88 3.766691 GCGGAGGCGGAGTACCAA 61.767 66.667 0.00 0.00 35.59 3.67
88 89 2.494918 CGGAGGCGGAGTACCAAG 59.505 66.667 0.00 0.00 35.59 3.61
89 90 2.187163 GGAGGCGGAGTACCAAGC 59.813 66.667 0.00 0.00 35.59 4.01
94 95 4.832608 CGGAGTACCAAGCCGCCC 62.833 72.222 0.00 0.00 38.46 6.13
95 96 3.400054 GGAGTACCAAGCCGCCCT 61.400 66.667 0.00 0.00 35.97 5.19
96 97 2.187163 GAGTACCAAGCCGCCCTC 59.813 66.667 0.00 0.00 0.00 4.30
97 98 3.718210 GAGTACCAAGCCGCCCTCG 62.718 68.421 0.00 0.00 0.00 4.63
98 99 3.766691 GTACCAAGCCGCCCTCGA 61.767 66.667 0.00 0.00 38.10 4.04
99 100 3.458163 TACCAAGCCGCCCTCGAG 61.458 66.667 5.13 5.13 38.10 4.04
102 103 4.521062 CAAGCCGCCCTCGAGGAG 62.521 72.222 33.39 23.97 38.24 3.69
111 112 3.847602 CTCGAGGAGGCCCTGCAG 61.848 72.222 6.78 6.78 44.53 4.41
114 115 4.792804 GAGGAGGCCCTGCAGCAC 62.793 72.222 8.66 1.36 44.53 4.40
123 124 3.561213 CTGCAGCACGCGATGGAG 61.561 66.667 15.93 15.19 46.97 3.86
126 127 4.827087 CAGCACGCGATGGAGGCT 62.827 66.667 15.93 8.72 34.64 4.58
127 128 3.147595 AGCACGCGATGGAGGCTA 61.148 61.111 15.93 0.00 32.09 3.93
128 129 2.659897 GCACGCGATGGAGGCTAG 60.660 66.667 15.93 0.00 0.00 3.42
129 130 2.659897 CACGCGATGGAGGCTAGC 60.660 66.667 15.93 6.04 0.00 3.42
130 131 3.917760 ACGCGATGGAGGCTAGCC 61.918 66.667 27.19 27.19 0.00 3.93
141 142 3.972276 GCTAGCCGCCTCGAGGAG 61.972 72.222 35.69 30.98 37.39 3.69
150 151 2.179517 CTCGAGGAGGACACGCAC 59.820 66.667 3.91 0.00 0.00 5.34
151 152 2.282251 TCGAGGAGGACACGCACT 60.282 61.111 0.00 0.00 0.00 4.40
152 153 2.126307 CGAGGAGGACACGCACTG 60.126 66.667 0.00 0.00 0.00 3.66
153 154 2.262915 GAGGAGGACACGCACTGG 59.737 66.667 0.00 0.00 0.00 4.00
154 155 3.302347 GAGGAGGACACGCACTGGG 62.302 68.421 0.00 0.00 0.00 4.45
155 156 3.311110 GGAGGACACGCACTGGGA 61.311 66.667 0.00 0.00 0.00 4.37
156 157 2.660064 GGAGGACACGCACTGGGAT 61.660 63.158 0.00 0.00 0.00 3.85
157 158 1.448540 GAGGACACGCACTGGGATG 60.449 63.158 0.00 0.00 0.00 3.51
158 159 2.436646 GGACACGCACTGGGATGG 60.437 66.667 0.00 0.00 0.00 3.51
159 160 2.436646 GACACGCACTGGGATGGG 60.437 66.667 0.00 0.00 38.44 4.00
160 161 4.722700 ACACGCACTGGGATGGGC 62.723 66.667 0.00 0.00 36.02 5.36
161 162 4.415150 CACGCACTGGGATGGGCT 62.415 66.667 0.00 0.00 36.02 5.19
162 163 4.415150 ACGCACTGGGATGGGCTG 62.415 66.667 0.00 0.00 36.02 4.85
164 165 4.828296 GCACTGGGATGGGCTGGG 62.828 72.222 0.00 0.00 0.00 4.45
165 166 4.133373 CACTGGGATGGGCTGGGG 62.133 72.222 0.00 0.00 0.00 4.96
169 170 4.847367 GGGATGGGCTGGGGCAAG 62.847 72.222 0.00 0.00 40.87 4.01
170 171 4.066139 GGATGGGCTGGGGCAAGT 62.066 66.667 0.00 0.00 40.87 3.16
171 172 2.440980 GATGGGCTGGGGCAAGTC 60.441 66.667 0.00 0.00 40.87 3.01
172 173 4.066139 ATGGGCTGGGGCAAGTCC 62.066 66.667 3.26 3.26 42.69 3.85
174 175 3.984732 GGGCTGGGGCAAGTCCTT 61.985 66.667 3.01 0.00 39.00 3.36
175 176 2.677875 GGCTGGGGCAAGTCCTTG 60.678 66.667 2.63 2.63 43.14 3.61
176 177 2.116125 GCTGGGGCAAGTCCTTGT 59.884 61.111 8.69 0.00 42.31 3.16
177 178 1.973812 GCTGGGGCAAGTCCTTGTC 60.974 63.158 8.69 6.02 43.94 3.18
184 185 2.369394 GGCAAGTCCTTGTCCTATTGG 58.631 52.381 8.69 0.00 42.31 3.16
185 186 1.745653 GCAAGTCCTTGTCCTATTGGC 59.254 52.381 8.69 0.00 42.31 4.52
186 187 2.009774 CAAGTCCTTGTCCTATTGGCG 58.990 52.381 0.00 0.00 35.92 5.69
187 188 0.541863 AGTCCTTGTCCTATTGGCGG 59.458 55.000 0.00 0.00 0.00 6.13
188 189 1.095807 GTCCTTGTCCTATTGGCGGC 61.096 60.000 0.00 0.00 0.00 6.53
189 190 2.180204 CCTTGTCCTATTGGCGGCG 61.180 63.158 0.51 0.51 0.00 6.46
190 191 2.124901 TTGTCCTATTGGCGGCGG 60.125 61.111 9.78 0.00 0.00 6.13
191 192 3.690685 TTGTCCTATTGGCGGCGGG 62.691 63.158 9.78 0.00 0.00 6.13
192 193 4.929707 GTCCTATTGGCGGCGGGG 62.930 72.222 9.78 3.72 0.00 5.73
195 196 4.929707 CTATTGGCGGCGGGGGAC 62.930 72.222 9.78 0.00 0.00 4.46
210 211 2.494918 GACTCCGTCCACATCCCG 59.505 66.667 0.00 0.00 0.00 5.14
211 212 3.718210 GACTCCGTCCACATCCCGC 62.718 68.421 0.00 0.00 0.00 6.13
212 213 3.461773 CTCCGTCCACATCCCGCT 61.462 66.667 0.00 0.00 0.00 5.52
213 214 3.432051 CTCCGTCCACATCCCGCTC 62.432 68.421 0.00 0.00 0.00 5.03
214 215 3.461773 CCGTCCACATCCCGCTCT 61.462 66.667 0.00 0.00 0.00 4.09
215 216 2.579201 CGTCCACATCCCGCTCTT 59.421 61.111 0.00 0.00 0.00 2.85
216 217 1.519455 CGTCCACATCCCGCTCTTC 60.519 63.158 0.00 0.00 0.00 2.87
217 218 1.519455 GTCCACATCCCGCTCTTCG 60.519 63.158 0.00 0.00 38.08 3.79
218 219 1.982395 TCCACATCCCGCTCTTCGT 60.982 57.895 0.00 0.00 36.19 3.85
219 220 1.811266 CCACATCCCGCTCTTCGTG 60.811 63.158 0.00 0.00 36.19 4.35
220 221 2.125512 ACATCCCGCTCTTCGTGC 60.126 61.111 0.00 0.00 36.19 5.34
221 222 2.185350 CATCCCGCTCTTCGTGCT 59.815 61.111 0.00 0.00 36.19 4.40
222 223 2.169789 CATCCCGCTCTTCGTGCTG 61.170 63.158 0.00 0.00 36.19 4.41
223 224 4.742201 TCCCGCTCTTCGTGCTGC 62.742 66.667 0.00 0.00 36.19 5.25
226 227 3.782244 CGCTCTTCGTGCTGCCAC 61.782 66.667 0.00 0.00 38.62 5.01
227 228 3.426568 GCTCTTCGTGCTGCCACC 61.427 66.667 0.00 0.00 38.79 4.61
228 229 3.114616 CTCTTCGTGCTGCCACCG 61.115 66.667 0.00 0.00 38.79 4.94
255 256 4.530857 CCGCCCGTCTAGCCCAAG 62.531 72.222 0.00 0.00 0.00 3.61
257 258 4.858680 GCCCGTCTAGCCCAAGCC 62.859 72.222 0.00 0.00 41.25 4.35
258 259 4.530857 CCCGTCTAGCCCAAGCCG 62.531 72.222 0.00 0.00 41.25 5.52
259 260 4.530857 CCGTCTAGCCCAAGCCGG 62.531 72.222 0.00 0.00 41.25 6.13
260 261 3.458163 CGTCTAGCCCAAGCCGGA 61.458 66.667 5.05 0.00 41.25 5.14
261 262 2.501610 GTCTAGCCCAAGCCGGAG 59.498 66.667 5.05 0.00 41.25 4.63
262 263 3.470888 TCTAGCCCAAGCCGGAGC 61.471 66.667 5.05 0.00 41.25 4.70
263 264 4.554036 CTAGCCCAAGCCGGAGCC 62.554 72.222 5.05 0.00 41.25 4.70
305 306 3.402681 CTCCACGCCTCCACCCAT 61.403 66.667 0.00 0.00 0.00 4.00
306 307 2.933287 TCCACGCCTCCACCCATT 60.933 61.111 0.00 0.00 0.00 3.16
307 308 2.035626 CCACGCCTCCACCCATTT 59.964 61.111 0.00 0.00 0.00 2.32
308 309 2.342650 CCACGCCTCCACCCATTTG 61.343 63.158 0.00 0.00 0.00 2.32
309 310 2.035626 ACGCCTCCACCCATTTGG 59.964 61.111 0.00 0.00 41.37 3.28
310 311 3.451894 CGCCTCCACCCATTTGGC 61.452 66.667 0.00 0.00 40.14 4.52
311 312 3.076916 GCCTCCACCCATTTGGCC 61.077 66.667 0.00 0.00 37.81 5.36
312 313 2.755469 CCTCCACCCATTTGGCCG 60.755 66.667 0.00 0.00 37.83 6.13
313 314 2.755469 CTCCACCCATTTGGCCGG 60.755 66.667 0.00 0.00 37.83 6.13
314 315 3.260888 TCCACCCATTTGGCCGGA 61.261 61.111 5.05 0.00 37.83 5.14
315 316 2.755469 CCACCCATTTGGCCGGAG 60.755 66.667 5.05 0.00 37.83 4.63
333 334 2.799371 GAGGCCTACTCGTGGACG 59.201 66.667 4.42 0.00 37.76 4.79
334 335 2.754658 AGGCCTACTCGTGGACGG 60.755 66.667 1.29 0.00 37.76 4.79
336 337 4.509737 GCCTACTCGTGGACGGGC 62.510 72.222 0.00 0.13 45.27 6.13
337 338 3.834799 CCTACTCGTGGACGGGCC 61.835 72.222 0.00 0.00 45.27 5.80
338 339 3.066190 CTACTCGTGGACGGGCCA 61.066 66.667 4.39 0.00 45.27 5.36
350 351 4.814294 GGGCCAGTACCGCGAGTG 62.814 72.222 8.23 0.72 0.00 3.51
351 352 4.814294 GGCCAGTACCGCGAGTGG 62.814 72.222 15.50 15.50 42.12 4.00
352 353 4.814294 GCCAGTACCGCGAGTGGG 62.814 72.222 19.85 13.94 39.92 4.61
353 354 3.379445 CCAGTACCGCGAGTGGGT 61.379 66.667 8.23 0.00 41.62 4.51
354 355 2.126071 CAGTACCGCGAGTGGGTG 60.126 66.667 8.23 0.00 38.50 4.61
355 356 2.282674 AGTACCGCGAGTGGGTGA 60.283 61.111 8.23 0.00 38.50 4.02
356 357 2.181021 GTACCGCGAGTGGGTGAG 59.819 66.667 8.23 0.00 38.50 3.51
357 358 3.755628 TACCGCGAGTGGGTGAGC 61.756 66.667 8.23 0.00 38.50 4.26
363 364 4.008933 GAGTGGGTGAGCACGCCT 62.009 66.667 13.62 10.64 45.13 5.52
364 365 3.941657 GAGTGGGTGAGCACGCCTC 62.942 68.421 13.62 14.58 45.13 4.70
376 377 2.408022 CGCCTCCCGTCTACTTCG 59.592 66.667 0.00 0.00 0.00 3.79
377 378 2.104530 GCCTCCCGTCTACTTCGC 59.895 66.667 0.00 0.00 0.00 4.70
378 379 2.806237 CCTCCCGTCTACTTCGCC 59.194 66.667 0.00 0.00 0.00 5.54
379 380 2.408022 CTCCCGTCTACTTCGCCG 59.592 66.667 0.00 0.00 0.00 6.46
380 381 3.753070 CTCCCGTCTACTTCGCCGC 62.753 68.421 0.00 0.00 0.00 6.53
382 383 4.170062 CCGTCTACTTCGCCGCGA 62.170 66.667 12.39 12.39 0.00 5.87
383 384 2.943034 CGTCTACTTCGCCGCGAC 60.943 66.667 16.57 2.17 34.89 5.19
384 385 2.943034 GTCTACTTCGCCGCGACG 60.943 66.667 16.57 16.73 34.89 5.12
385 386 4.824166 TCTACTTCGCCGCGACGC 62.824 66.667 16.57 10.49 34.89 5.19
398 399 3.760035 GACGCCGGAGCAGGAGAA 61.760 66.667 5.05 0.00 39.83 2.87
399 400 3.708220 GACGCCGGAGCAGGAGAAG 62.708 68.421 5.05 0.00 39.83 2.85
400 401 4.521062 CGCCGGAGCAGGAGAAGG 62.521 72.222 5.05 0.00 39.83 3.46
401 402 3.394836 GCCGGAGCAGGAGAAGGT 61.395 66.667 5.05 0.00 39.53 3.50
402 403 2.896443 CCGGAGCAGGAGAAGGTC 59.104 66.667 0.00 0.00 0.00 3.85
403 404 1.684049 CCGGAGCAGGAGAAGGTCT 60.684 63.158 0.00 0.00 34.14 3.85
404 405 0.395862 CCGGAGCAGGAGAAGGTCTA 60.396 60.000 0.00 0.00 34.14 2.59
405 406 1.698506 CGGAGCAGGAGAAGGTCTAT 58.301 55.000 0.00 0.00 34.14 1.98
406 407 1.611491 CGGAGCAGGAGAAGGTCTATC 59.389 57.143 0.00 0.00 34.14 2.08
407 408 2.751479 CGGAGCAGGAGAAGGTCTATCT 60.751 54.545 0.00 0.00 34.14 1.98
408 409 2.890945 GGAGCAGGAGAAGGTCTATCTC 59.109 54.545 0.00 0.00 42.09 2.75
409 410 2.552315 GAGCAGGAGAAGGTCTATCTCG 59.448 54.545 0.00 0.00 43.43 4.04
410 411 2.173782 AGCAGGAGAAGGTCTATCTCGA 59.826 50.000 0.00 0.00 43.43 4.04
411 412 2.552315 GCAGGAGAAGGTCTATCTCGAG 59.448 54.545 5.93 5.93 43.43 4.04
412 413 2.552315 CAGGAGAAGGTCTATCTCGAGC 59.448 54.545 7.81 0.00 43.43 5.03
413 414 1.533731 GGAGAAGGTCTATCTCGAGCG 59.466 57.143 7.81 0.00 43.43 5.03
414 415 0.948678 AGAAGGTCTATCTCGAGCGC 59.051 55.000 7.81 0.00 36.57 5.92
415 416 0.948678 GAAGGTCTATCTCGAGCGCT 59.051 55.000 11.27 11.27 36.57 5.92
416 417 0.665835 AAGGTCTATCTCGAGCGCTG 59.334 55.000 18.48 7.71 36.57 5.18
417 418 1.169661 AGGTCTATCTCGAGCGCTGG 61.170 60.000 18.48 15.88 36.57 4.85
418 419 1.167155 GGTCTATCTCGAGCGCTGGA 61.167 60.000 18.48 20.21 0.00 3.86
419 420 0.663688 GTCTATCTCGAGCGCTGGAA 59.336 55.000 22.75 13.89 0.00 3.53
420 421 0.947960 TCTATCTCGAGCGCTGGAAG 59.052 55.000 22.75 16.93 0.00 3.46
421 422 0.039617 CTATCTCGAGCGCTGGAAGG 60.040 60.000 22.75 12.49 0.00 3.46
422 423 0.465642 TATCTCGAGCGCTGGAAGGA 60.466 55.000 22.75 17.28 0.00 3.36
423 424 1.323271 ATCTCGAGCGCTGGAAGGAA 61.323 55.000 22.75 9.37 0.00 3.36
424 425 1.807573 CTCGAGCGCTGGAAGGAAC 60.808 63.158 22.75 0.69 0.00 3.62
425 426 2.048222 CGAGCGCTGGAAGGAACA 60.048 61.111 18.48 0.00 0.00 3.18
426 427 2.383527 CGAGCGCTGGAAGGAACAC 61.384 63.158 18.48 0.00 0.00 3.32
427 428 1.004440 GAGCGCTGGAAGGAACACT 60.004 57.895 18.48 0.00 0.00 3.55
428 429 1.294659 GAGCGCTGGAAGGAACACTG 61.295 60.000 18.48 0.00 0.00 3.66
429 430 2.328099 GCGCTGGAAGGAACACTGG 61.328 63.158 0.00 0.00 0.00 4.00
430 431 2.328099 CGCTGGAAGGAACACTGGC 61.328 63.158 0.00 0.00 0.00 4.85
431 432 1.973812 GCTGGAAGGAACACTGGCC 60.974 63.158 0.00 0.00 0.00 5.36
432 433 1.672356 CTGGAAGGAACACTGGCCG 60.672 63.158 0.00 0.00 0.00 6.13
433 434 2.111999 CTGGAAGGAACACTGGCCGA 62.112 60.000 0.00 0.00 0.00 5.54
434 435 1.671379 GGAAGGAACACTGGCCGAC 60.671 63.158 0.00 0.00 0.00 4.79
435 436 1.070786 GAAGGAACACTGGCCGACA 59.929 57.895 0.00 0.00 0.00 4.35
443 444 2.435586 CTGGCCGACAGCAAGGAG 60.436 66.667 0.00 0.00 46.50 3.69
444 445 4.704833 TGGCCGACAGCAAGGAGC 62.705 66.667 0.00 0.00 46.50 4.70
459 460 2.645730 GGAGCAGATATGCTACGAGG 57.354 55.000 16.14 0.00 46.36 4.63
460 461 1.403514 GGAGCAGATATGCTACGAGGC 60.404 57.143 16.14 1.02 46.36 4.70
461 462 0.605589 AGCAGATATGCTACGAGGCC 59.394 55.000 14.39 0.00 44.28 5.19
462 463 0.318441 GCAGATATGCTACGAGGCCA 59.682 55.000 5.01 0.00 0.00 5.36
463 464 1.066573 GCAGATATGCTACGAGGCCAT 60.067 52.381 5.01 0.00 0.00 4.40
464 465 2.614779 CAGATATGCTACGAGGCCATG 58.385 52.381 5.01 0.00 0.00 3.66
465 466 1.066573 AGATATGCTACGAGGCCATGC 60.067 52.381 5.01 1.66 0.00 4.06
466 467 0.979665 ATATGCTACGAGGCCATGCT 59.020 50.000 5.01 0.00 0.00 3.79
467 468 0.318441 TATGCTACGAGGCCATGCTC 59.682 55.000 5.01 0.00 0.00 4.26
468 469 2.280457 GCTACGAGGCCATGCTCC 60.280 66.667 5.01 0.00 0.00 4.70
469 470 3.094062 GCTACGAGGCCATGCTCCA 62.094 63.158 5.01 0.00 0.00 3.86
516 517 1.227853 ACAAAGGAGGTCGTGCCAC 60.228 57.895 2.06 0.00 40.61 5.01
534 535 3.632107 GCACCACGCGTCGAACAA 61.632 61.111 9.86 0.00 0.00 2.83
537 538 1.810441 ACCACGCGTCGAACAAACA 60.810 52.632 9.86 0.00 0.00 2.83
538 539 1.367195 CCACGCGTCGAACAAACAC 60.367 57.895 9.86 0.00 0.00 3.32
539 540 1.345516 CACGCGTCGAACAAACACA 59.654 52.632 9.86 0.00 0.00 3.72
540 541 0.917648 CACGCGTCGAACAAACACAC 60.918 55.000 9.86 0.00 0.00 3.82
541 542 1.367195 CGCGTCGAACAAACACACC 60.367 57.895 0.00 0.00 0.00 4.16
544 545 0.722282 CGTCGAACAAACACACCACA 59.278 50.000 0.00 0.00 0.00 4.17
545 546 1.329292 CGTCGAACAAACACACCACAT 59.671 47.619 0.00 0.00 0.00 3.21
546 547 2.598907 CGTCGAACAAACACACCACATC 60.599 50.000 0.00 0.00 0.00 3.06
547 548 2.353269 GTCGAACAAACACACCACATCA 59.647 45.455 0.00 0.00 0.00 3.07
548 549 3.010420 TCGAACAAACACACCACATCAA 58.990 40.909 0.00 0.00 0.00 2.57
549 550 3.440522 TCGAACAAACACACCACATCAAA 59.559 39.130 0.00 0.00 0.00 2.69
550 551 4.082733 TCGAACAAACACACCACATCAAAA 60.083 37.500 0.00 0.00 0.00 2.44
552 553 3.520569 ACAAACACACCACATCAAAAGC 58.479 40.909 0.00 0.00 0.00 3.51
553 554 3.056250 ACAAACACACCACATCAAAAGCA 60.056 39.130 0.00 0.00 0.00 3.91
554 555 3.441496 AACACACCACATCAAAAGCAG 57.559 42.857 0.00 0.00 0.00 4.24
555 556 2.653726 ACACACCACATCAAAAGCAGA 58.346 42.857 0.00 0.00 0.00 4.26
556 557 2.620115 ACACACCACATCAAAAGCAGAG 59.380 45.455 0.00 0.00 0.00 3.35
557 558 1.610522 ACACCACATCAAAAGCAGAGC 59.389 47.619 0.00 0.00 0.00 4.09
558 559 1.610038 CACCACATCAAAAGCAGAGCA 59.390 47.619 0.00 0.00 0.00 4.26
559 560 2.034939 CACCACATCAAAAGCAGAGCAA 59.965 45.455 0.00 0.00 0.00 3.91
560 561 2.295349 ACCACATCAAAAGCAGAGCAAG 59.705 45.455 0.00 0.00 0.00 4.01
561 562 2.325761 CACATCAAAAGCAGAGCAAGC 58.674 47.619 0.00 0.00 0.00 4.01
562 563 1.271656 ACATCAAAAGCAGAGCAAGCC 59.728 47.619 0.00 0.00 0.00 4.35
563 564 1.271379 CATCAAAAGCAGAGCAAGCCA 59.729 47.619 0.00 0.00 0.00 4.75
634 635 2.124109 TTGGCCAAAGGTGACGCA 60.124 55.556 17.98 0.00 0.00 5.24
635 636 1.733402 CTTGGCCAAAGGTGACGCAA 61.733 55.000 20.91 0.00 31.68 4.85
699 700 2.205152 ACGTGAGGCCAGGTAACGT 61.205 57.895 5.01 10.51 42.20 3.99
739 743 3.132289 AGGGAAGAAGCATCGAATCGTAA 59.868 43.478 1.52 0.00 0.00 3.18
741 745 4.331717 GGGAAGAAGCATCGAATCGTAAAA 59.668 41.667 1.52 0.00 0.00 1.52
743 747 6.458342 GGGAAGAAGCATCGAATCGTAAAAAT 60.458 38.462 1.52 0.00 0.00 1.82
754 770 8.495361 TCGAATCGTAAAAATATTTGGAAGGA 57.505 30.769 1.52 2.61 0.00 3.36
784 800 1.738099 CTTCGTTGTCGCCAGGGAG 60.738 63.158 0.00 0.00 36.96 4.30
785 801 3.876589 TTCGTTGTCGCCAGGGAGC 62.877 63.158 0.00 0.00 36.96 4.70
793 809 3.119096 GCCAGGGAGCGAACGAAC 61.119 66.667 0.00 0.00 0.00 3.95
831 851 2.432628 CGGAGGAGTCGTGCCAAC 60.433 66.667 0.00 0.00 0.00 3.77
840 860 0.317479 GTCGTGCCAACCTGTAGACT 59.683 55.000 0.00 0.00 0.00 3.24
841 861 1.542915 GTCGTGCCAACCTGTAGACTA 59.457 52.381 0.00 0.00 0.00 2.59
843 863 2.230508 TCGTGCCAACCTGTAGACTAAG 59.769 50.000 0.00 0.00 0.00 2.18
846 866 3.258622 GTGCCAACCTGTAGACTAAGACT 59.741 47.826 0.00 0.00 0.00 3.24
847 867 4.461781 GTGCCAACCTGTAGACTAAGACTA 59.538 45.833 0.00 0.00 0.00 2.59
848 868 4.705507 TGCCAACCTGTAGACTAAGACTAG 59.294 45.833 0.00 0.00 0.00 2.57
849 869 4.948621 GCCAACCTGTAGACTAAGACTAGA 59.051 45.833 0.00 0.00 0.00 2.43
851 871 5.944599 CCAACCTGTAGACTAAGACTAGACA 59.055 44.000 0.00 0.00 0.00 3.41
852 872 6.127952 CCAACCTGTAGACTAAGACTAGACAC 60.128 46.154 0.00 0.00 0.00 3.67
853 873 6.124316 ACCTGTAGACTAAGACTAGACACA 57.876 41.667 0.00 0.00 0.00 3.72
855 875 5.063691 CCTGTAGACTAAGACTAGACACACG 59.936 48.000 0.00 0.00 0.00 4.49
856 876 5.545588 TGTAGACTAAGACTAGACACACGT 58.454 41.667 0.00 0.00 0.00 4.49
857 877 5.636965 TGTAGACTAAGACTAGACACACGTC 59.363 44.000 0.00 0.00 42.95 4.34
908 928 1.471684 CAGGAGAAAACCAGCAGCATC 59.528 52.381 0.00 0.00 0.00 3.91
909 929 1.074405 AGGAGAAAACCAGCAGCATCA 59.926 47.619 0.00 0.00 0.00 3.07
1119 1175 2.685380 CAGTCCGAGCCCTTCCCT 60.685 66.667 0.00 0.00 0.00 4.20
1136 1192 0.338120 CCTGAGGTCCTCCTTCTCCT 59.662 60.000 16.60 0.00 45.24 3.69
1148 1204 4.102367 CCTCCTTCTCCTCCCTTTAGATTG 59.898 50.000 0.00 0.00 0.00 2.67
1167 1249 1.490490 TGTCTACCCATTGATGCTCCC 59.510 52.381 0.00 0.00 0.00 4.30
1170 1252 0.183492 TACCCATTGATGCTCCCTGC 59.817 55.000 0.00 0.00 43.25 4.85
1188 1274 6.362248 TCCCTGCTCTGTTTTACTTAGTTTT 58.638 36.000 0.00 0.00 0.00 2.43
1240 1326 0.606604 TCTCGCTTGTCTGGGTTACC 59.393 55.000 0.00 0.00 37.24 2.85
1243 1329 2.388232 GCTTGTCTGGGTTACCGCG 61.388 63.158 0.00 0.00 40.75 6.46
1274 1363 2.032924 CGCTGGGGAATCGATTTTTACC 59.967 50.000 12.81 8.53 0.00 2.85
1320 1421 7.568199 AGGATGTATTACAAAGTACCAATGC 57.432 36.000 0.00 0.00 0.00 3.56
1361 1465 1.375013 TGGTTAACGCGGCTCCTTC 60.375 57.895 12.47 0.00 0.00 3.46
1362 1466 1.375013 GGTTAACGCGGCTCCTTCA 60.375 57.895 12.47 0.00 0.00 3.02
1379 1497 2.859165 TCAGGGCTAGGTTTCAAGTG 57.141 50.000 0.00 0.00 0.00 3.16
1382 1500 0.881796 GGGCTAGGTTTCAAGTGCAC 59.118 55.000 9.40 9.40 0.00 4.57
1479 1823 4.433615 GGTGATATCTATGTGGCCATACG 58.566 47.826 9.72 0.73 32.29 3.06
1518 1862 3.198200 TCCGGCTAGCCTAAAACACATAA 59.802 43.478 30.55 0.33 0.00 1.90
1519 1863 4.134563 CCGGCTAGCCTAAAACACATAAT 58.865 43.478 30.55 0.00 0.00 1.28
1648 1992 9.297586 TGCTAACTACTATTTCGAACTGTATTG 57.702 33.333 0.00 0.00 0.00 1.90
1649 1993 8.753175 GCTAACTACTATTTCGAACTGTATTGG 58.247 37.037 0.00 2.75 0.00 3.16
1650 1994 9.245962 CTAACTACTATTTCGAACTGTATTGGG 57.754 37.037 0.00 0.00 0.00 4.12
1675 2024 5.859648 CCGTGGCTTCGTAATTTTTAATTGT 59.140 36.000 0.00 0.00 0.00 2.71
1808 2164 5.006165 CCTTTGCTCTCTTTATCTTACAGCG 59.994 44.000 0.00 0.00 0.00 5.18
1811 2167 6.203808 TGCTCTCTTTATCTTACAGCGTTA 57.796 37.500 0.00 0.00 0.00 3.18
1820 2179 9.456797 CTTTATCTTACAGCGTTACTTTTTACG 57.543 33.333 0.00 0.00 40.55 3.18
1912 2271 6.803154 AACCTGAAGAAATTACTGCAGTAC 57.197 37.500 26.02 14.43 40.81 2.73
1941 2300 3.260884 ACTTCGATGAACCAGGCTCTTTA 59.739 43.478 5.16 0.00 0.00 1.85
2099 2458 6.149807 TGGTGTTACAAAGTTTCTTCGAAAGT 59.850 34.615 0.00 0.00 0.00 2.66
2256 2615 3.531538 TCATACGAATCCTTGGTCTTGC 58.468 45.455 0.00 0.00 0.00 4.01
2336 2695 2.233676 AGCTGTATGGTCACATCGTTCA 59.766 45.455 0.00 0.00 38.53 3.18
2339 2698 4.991056 GCTGTATGGTCACATCGTTCATAT 59.009 41.667 0.00 0.00 38.53 1.78
2405 2764 2.108952 AGCTGGACACTCAGGGAAAATT 59.891 45.455 0.00 0.00 35.43 1.82
2412 2771 6.099557 TGGACACTCAGGGAAAATTTGATTTT 59.900 34.615 0.00 0.00 44.56 1.82
2413 2772 6.992123 GGACACTCAGGGAAAATTTGATTTTT 59.008 34.615 0.00 0.00 42.15 1.94
2454 2813 6.116126 ACTTGAAATCTATCTTACCCACAGC 58.884 40.000 0.00 0.00 0.00 4.40
2474 2833 5.105957 ACAGCGTAATGGAATACAATTGCAA 60.106 36.000 5.05 0.00 0.00 4.08
2491 2850 4.095410 TGCAACATGCTTTCCGATTAAG 57.905 40.909 3.78 0.00 45.31 1.85
2551 2910 9.685276 AATAAAAGATGATGACTGGATGTTACA 57.315 29.630 0.00 0.00 0.00 2.41
2635 2998 7.996644 ACTCTGTTGTAAAGGGTTGAGAAATAA 59.003 33.333 0.00 0.00 0.00 1.40
2662 3025 5.843673 TGAAATGCAAGTAAAACTCACCA 57.156 34.783 0.00 0.00 0.00 4.17
2678 3041 1.541147 CACCACCACCTGCTACATTTG 59.459 52.381 0.00 0.00 0.00 2.32
2689 3052 4.083643 CCTGCTACATTTGTCAGACAGTTG 60.084 45.833 2.82 8.13 0.00 3.16
2715 3078 9.107177 GAAACATCTCTGATATTCAGTGACAAT 57.893 33.333 10.47 0.00 45.90 2.71
2780 3143 5.149977 GCAACTTGACAAGCTTCAATCTAC 58.850 41.667 15.24 0.00 34.96 2.59
2910 3273 7.751348 TGAAAAATTACCGTGTGCACAATATAC 59.249 33.333 23.59 7.80 0.00 1.47
2914 3277 4.994907 ACCGTGTGCACAATATACTAGA 57.005 40.909 23.59 0.00 0.00 2.43
2920 3283 6.129393 GTGTGCACAATATACTAGAAATGCG 58.871 40.000 23.59 0.00 34.56 4.73
2957 3320 0.723414 CACACTGCCTAGATTGCACG 59.277 55.000 0.00 0.00 34.46 5.34
3008 3371 1.001633 ACGGTCACACCTATGGTTGAC 59.998 52.381 16.35 16.35 40.01 3.18
3057 3420 5.104693 TCCCTGACTTCGGATAGCAAAAATA 60.105 40.000 0.00 0.00 0.00 1.40
3118 3481 8.337532 TGTATGCATTGATTAGTCTCAAATTCG 58.662 33.333 3.54 0.00 38.55 3.34
3132 3495 2.684881 CAAATTCGCTCTGCCTTGGTAT 59.315 45.455 0.00 0.00 0.00 2.73
3228 3591 4.527038 TGTTCTACAGTTTCCCTCTAGTGG 59.473 45.833 3.70 3.70 0.00 4.00
3229 3592 4.399483 TCTACAGTTTCCCTCTAGTGGT 57.601 45.455 9.90 0.00 0.00 4.16
3230 3593 4.087182 TCTACAGTTTCCCTCTAGTGGTG 58.913 47.826 9.90 3.85 0.00 4.17
3384 3747 4.382345 AAGATGTGTTAGTACGGGCTAC 57.618 45.455 0.00 0.00 0.00 3.58
3419 3782 7.415095 CCCTAATGTCGAACATTTTGCATCTTA 60.415 37.037 15.21 0.00 45.80 2.10
3489 3852 3.764434 TCAAGAAGACGAGTCTAGCCATT 59.236 43.478 6.15 0.00 39.39 3.16
3501 3864 6.312426 CGAGTCTAGCCATTATCATTGGAATC 59.688 42.308 0.00 0.00 36.26 2.52
3543 3906 1.032014 GACAGTGCAACATGGTGGTT 58.968 50.000 13.78 0.00 41.43 3.67
3555 3918 2.435059 GTGGTTGAGAGGCTCGGC 60.435 66.667 9.22 6.17 32.35 5.54
3687 4052 3.756434 CCGGATATGTTTGAACAAGTGGT 59.244 43.478 0.00 0.00 43.03 4.16
3692 4057 6.207810 GGATATGTTTGAACAAGTGGTGGTTA 59.792 38.462 0.10 0.00 43.03 2.85
3707 4072 3.930848 GGTGGTTACTCGTTATGTTGGAG 59.069 47.826 0.00 0.00 0.00 3.86
3778 4146 6.423905 GTCATATTTTTGCCGAGCATCTAGTA 59.576 38.462 0.00 0.00 38.76 1.82
3779 4147 6.646653 TCATATTTTTGCCGAGCATCTAGTAG 59.353 38.462 0.00 0.00 38.76 2.57
3785 4153 3.194755 TGCCGAGCATCTAGTAGTTTTCA 59.805 43.478 0.00 0.00 31.71 2.69
3807 4175 2.628178 TCTTACCGATGATACCCTGCAG 59.372 50.000 6.78 6.78 0.00 4.41
3826 4194 3.983344 GCAGTGGATGAAAATGTGTTGAC 59.017 43.478 0.00 0.00 0.00 3.18
3846 4240 8.672815 TGTTGACGATGATTGCTTTATCAAATA 58.327 29.630 0.00 0.00 38.01 1.40
3923 4317 7.833285 ATTACAAAATATAATTCGGGCAGGT 57.167 32.000 0.00 0.00 0.00 4.00
3940 4334 3.253188 GCAGGTGCAATTTCAGAAGTACA 59.747 43.478 0.00 0.00 41.59 2.90
3941 4335 4.614535 GCAGGTGCAATTTCAGAAGTACAG 60.615 45.833 0.00 0.00 41.59 2.74
3942 4336 4.516698 CAGGTGCAATTTCAGAAGTACAGT 59.483 41.667 0.00 0.00 0.00 3.55
3943 4337 5.700832 CAGGTGCAATTTCAGAAGTACAGTA 59.299 40.000 0.00 0.00 0.00 2.74
3944 4338 5.701290 AGGTGCAATTTCAGAAGTACAGTAC 59.299 40.000 2.05 2.05 0.00 2.73
3955 4349 0.725117 GTACAGTACCACATTGCGCC 59.275 55.000 4.18 0.00 0.00 6.53
3958 4352 1.290203 CAGTACCACATTGCGCCTAG 58.710 55.000 4.18 0.00 0.00 3.02
3964 4358 2.297895 ACATTGCGCCTAGGGTGGA 61.298 57.895 11.72 0.00 33.18 4.02
4036 4439 7.911651 ACGATCAGGACATGGATCTATTTTAT 58.088 34.615 0.00 0.00 38.18 1.40
4057 4460 2.288579 TGCGGAAGTCATCGTTACAGTT 60.289 45.455 0.00 0.00 0.00 3.16
4077 4481 2.670148 GGGACGGGAAGACTGCCAT 61.670 63.158 0.65 0.00 30.82 4.40
4160 6032 2.536928 GCAAAGTTCGTAAGGCTATGCG 60.537 50.000 0.00 0.00 38.47 4.73
4179 6051 1.523758 GGAACAACGGCTGAATCAGT 58.476 50.000 12.29 0.00 33.43 3.41
4208 6080 0.387239 GTGCAACATGGCCTTTCGTC 60.387 55.000 3.32 0.00 36.32 4.20
4225 6097 3.179048 TCGTCGATGCACATACAAGAAG 58.821 45.455 0.00 0.00 0.00 2.85
4227 6099 3.000674 CGTCGATGCACATACAAGAAGTC 60.001 47.826 0.00 0.00 0.00 3.01
4247 6119 4.646492 AGTCTTCAATCTTTGGTGCACTTT 59.354 37.500 17.98 0.00 0.00 2.66
4267 6139 7.301054 CACTTTACAGGAAATAAGCTTGACTG 58.699 38.462 9.86 11.82 0.00 3.51
4268 6140 6.431234 ACTTTACAGGAAATAAGCTTGACTGG 59.569 38.462 9.86 0.00 0.00 4.00
4274 6146 6.481644 CAGGAAATAAGCTTGACTGGAGATAC 59.518 42.308 9.86 0.00 0.00 2.24
4293 6165 7.171678 GGAGATACGAAAAATGAGATAAGGTGG 59.828 40.741 0.00 0.00 0.00 4.61
4313 6185 5.455392 GTGGAAATTCACTGTTGATGACTG 58.545 41.667 0.00 0.00 34.98 3.51
4322 6194 1.561076 TGTTGATGACTGGGATCCCTG 59.439 52.381 30.66 30.66 40.33 4.45
4338 6210 0.527817 CCTGTTCATCGCGTAGGTCC 60.528 60.000 5.77 0.00 0.00 4.46
4340 6212 0.604073 TGTTCATCGCGTAGGTCCAA 59.396 50.000 5.77 0.00 0.00 3.53
4342 6214 2.277084 GTTCATCGCGTAGGTCCAAAT 58.723 47.619 5.77 0.00 0.00 2.32
4343 6215 1.934589 TCATCGCGTAGGTCCAAATG 58.065 50.000 5.77 0.00 0.00 2.32
4344 6216 0.304705 CATCGCGTAGGTCCAAATGC 59.695 55.000 5.77 0.00 0.00 3.56
4346 6218 2.403586 GCGTAGGTCCAAATGCGC 59.596 61.111 0.00 0.00 42.91 6.09
4347 6219 3.883462 CGTAGGTCCAAATGCGCA 58.117 55.556 14.96 14.96 0.00 6.09
4348 6220 2.393557 CGTAGGTCCAAATGCGCAT 58.606 52.632 19.28 19.28 0.00 4.73
4349 6221 0.304705 CGTAGGTCCAAATGCGCATC 59.695 55.000 25.53 10.62 0.00 3.91
4352 6224 2.785425 GGTCCAAATGCGCATCCCC 61.785 63.158 25.53 14.76 0.00 4.81
4355 6240 2.709883 CCAAATGCGCATCCCCGTT 61.710 57.895 25.53 11.16 0.00 4.44
4386 6271 0.111446 TCGCCAGGTGAATTTGGGAA 59.889 50.000 0.00 0.00 34.96 3.97
4387 6272 0.965439 CGCCAGGTGAATTTGGGAAA 59.035 50.000 0.00 0.00 34.96 3.13
4388 6273 1.336795 CGCCAGGTGAATTTGGGAAAC 60.337 52.381 0.00 0.00 34.96 2.78
4389 6274 1.336795 GCCAGGTGAATTTGGGAAACG 60.337 52.381 0.00 0.00 34.96 3.60
4390 6275 1.272212 CCAGGTGAATTTGGGAAACGG 59.728 52.381 0.00 0.00 0.00 4.44
4391 6276 1.272212 CAGGTGAATTTGGGAAACGGG 59.728 52.381 0.00 0.00 0.00 5.28
4392 6277 1.133294 AGGTGAATTTGGGAAACGGGT 60.133 47.619 0.00 0.00 0.00 5.28
4393 6278 1.689813 GGTGAATTTGGGAAACGGGTT 59.310 47.619 0.00 0.00 0.00 4.11
4394 6279 2.103432 GGTGAATTTGGGAAACGGGTTT 59.897 45.455 0.00 0.00 35.14 3.27
4395 6280 3.432467 GGTGAATTTGGGAAACGGGTTTT 60.432 43.478 0.00 0.00 32.11 2.43
4396 6281 4.193090 GTGAATTTGGGAAACGGGTTTTT 58.807 39.130 0.00 0.00 32.11 1.94
4397 6282 4.271533 GTGAATTTGGGAAACGGGTTTTTC 59.728 41.667 0.00 0.00 35.13 2.29
4403 6288 2.410785 GAAACGGGTTTTTCCTTCCG 57.589 50.000 0.00 0.00 46.95 4.30
4404 6289 1.001048 GAAACGGGTTTTTCCTTCCGG 60.001 52.381 0.00 0.00 45.97 5.14
4405 6290 0.106569 AACGGGTTTTTCCTTCCGGT 60.107 50.000 0.00 0.00 45.97 5.28
4406 6291 0.106569 ACGGGTTTTTCCTTCCGGTT 60.107 50.000 0.00 0.00 45.97 4.44
4407 6292 1.034356 CGGGTTTTTCCTTCCGGTTT 58.966 50.000 0.00 0.00 38.93 3.27
4408 6293 1.409790 CGGGTTTTTCCTTCCGGTTTT 59.590 47.619 0.00 0.00 38.93 2.43
4409 6294 2.800273 CGGGTTTTTCCTTCCGGTTTTG 60.800 50.000 0.00 0.00 38.93 2.44
4410 6295 2.484065 GGGTTTTTCCTTCCGGTTTTGG 60.484 50.000 0.00 0.00 36.25 3.28
4411 6296 2.431419 GGTTTTTCCTTCCGGTTTTGGA 59.569 45.455 0.00 2.18 35.83 3.53
4412 6297 3.118702 GGTTTTTCCTTCCGGTTTTGGAA 60.119 43.478 0.00 8.62 45.62 3.53
4413 6298 4.505808 GTTTTTCCTTCCGGTTTTGGAAA 58.494 39.130 20.25 20.25 46.95 3.13
4415 6300 3.804786 TTCCTTCCGGTTTTGGAAAAC 57.195 42.857 0.00 6.46 46.95 2.43
4416 6301 1.677052 TCCTTCCGGTTTTGGAAAACG 59.323 47.619 0.00 4.01 46.95 3.60
4417 6302 1.269361 CCTTCCGGTTTTGGAAAACGG 60.269 52.381 20.59 20.59 46.95 4.44
4421 6306 2.296831 CGGTTTTGGAAAACGGGTTT 57.703 45.000 12.40 0.00 47.00 3.27
4422 6307 2.619147 CGGTTTTGGAAAACGGGTTTT 58.381 42.857 9.13 9.13 47.00 2.43
4423 6308 3.001414 CGGTTTTGGAAAACGGGTTTTT 58.999 40.909 10.55 0.00 47.00 1.94
4424 6309 4.179298 CGGTTTTGGAAAACGGGTTTTTA 58.821 39.130 10.55 1.88 47.00 1.52
4425 6310 4.032672 CGGTTTTGGAAAACGGGTTTTTAC 59.967 41.667 10.55 7.95 47.00 2.01
4426 6311 4.332268 GGTTTTGGAAAACGGGTTTTTACC 59.668 41.667 10.55 8.83 47.00 2.85
4427 6312 5.177326 GTTTTGGAAAACGGGTTTTTACCT 58.823 37.500 10.55 0.00 42.26 3.08
4428 6313 4.652421 TTGGAAAACGGGTTTTTACCTC 57.348 40.909 10.55 0.00 42.26 3.85
4429 6314 2.957680 TGGAAAACGGGTTTTTACCTCC 59.042 45.455 10.55 7.73 42.26 4.30
4430 6315 3.225104 GGAAAACGGGTTTTTACCTCCT 58.775 45.455 10.55 0.00 42.26 3.69
4431 6316 3.005050 GGAAAACGGGTTTTTACCTCCTG 59.995 47.826 10.55 0.00 42.26 3.86
4432 6317 3.301794 AAACGGGTTTTTACCTCCTGT 57.698 42.857 0.00 0.00 41.88 4.00
4433 6318 3.301794 AACGGGTTTTTACCTCCTGTT 57.698 42.857 0.00 0.00 43.38 3.16
4434 6319 3.301794 ACGGGTTTTTACCTCCTGTTT 57.698 42.857 0.00 0.00 37.54 2.83
4435 6320 3.634504 ACGGGTTTTTACCTCCTGTTTT 58.365 40.909 0.00 0.00 37.54 2.43
4436 6321 4.790937 ACGGGTTTTTACCTCCTGTTTTA 58.209 39.130 0.00 0.00 37.54 1.52
4437 6322 5.387788 ACGGGTTTTTACCTCCTGTTTTAT 58.612 37.500 0.00 0.00 37.54 1.40
4438 6323 5.834742 ACGGGTTTTTACCTCCTGTTTTATT 59.165 36.000 0.00 0.00 37.54 1.40
4439 6324 6.324512 ACGGGTTTTTACCTCCTGTTTTATTT 59.675 34.615 0.00 0.00 37.54 1.40
4440 6325 7.147689 ACGGGTTTTTACCTCCTGTTTTATTTT 60.148 33.333 0.00 0.00 37.54 1.82
4441 6326 8.358895 CGGGTTTTTACCTCCTGTTTTATTTTA 58.641 33.333 0.00 0.00 0.00 1.52
4550 6435 7.617533 AAATCATGAAACGGTTTTTAGTTCG 57.382 32.000 7.65 0.00 0.00 3.95
4551 6436 5.738118 TCATGAAACGGTTTTTAGTTCGT 57.262 34.783 7.65 0.00 37.45 3.85
4552 6437 5.503498 TCATGAAACGGTTTTTAGTTCGTG 58.497 37.500 7.65 5.82 35.93 4.35
4553 6438 4.943142 TGAAACGGTTTTTAGTTCGTGT 57.057 36.364 7.65 0.00 35.93 4.49
4554 6439 5.294050 TGAAACGGTTTTTAGTTCGTGTT 57.706 34.783 7.65 0.00 35.93 3.32
4555 6440 5.697826 TGAAACGGTTTTTAGTTCGTGTTT 58.302 33.333 7.65 0.00 35.93 2.83
4556 6441 6.148264 TGAAACGGTTTTTAGTTCGTGTTTT 58.852 32.000 7.65 0.00 35.93 2.43
4557 6442 7.301054 TGAAACGGTTTTTAGTTCGTGTTTTA 58.699 30.769 7.65 0.00 35.93 1.52
4558 6443 7.967303 TGAAACGGTTTTTAGTTCGTGTTTTAT 59.033 29.630 7.65 0.00 35.93 1.40
4559 6444 8.686397 AAACGGTTTTTAGTTCGTGTTTTATT 57.314 26.923 0.00 0.00 35.93 1.40
4560 6445 8.686397 AACGGTTTTTAGTTCGTGTTTTATTT 57.314 26.923 0.00 0.00 35.93 1.40
4561 6446 8.686397 ACGGTTTTTAGTTCGTGTTTTATTTT 57.314 26.923 0.00 0.00 34.40 1.82
4562 6447 9.780413 ACGGTTTTTAGTTCGTGTTTTATTTTA 57.220 25.926 0.00 0.00 34.40 1.52
4570 6455 8.431020 AGTTCGTGTTTTATTTTAAAGATCGC 57.569 30.769 0.00 0.00 0.00 4.58
4571 6456 8.071368 AGTTCGTGTTTTATTTTAAAGATCGCA 58.929 29.630 0.00 0.00 0.00 5.10
4572 6457 8.683774 GTTCGTGTTTTATTTTAAAGATCGCAA 58.316 29.630 0.00 0.00 0.00 4.85
4573 6458 8.206516 TCGTGTTTTATTTTAAAGATCGCAAC 57.793 30.769 0.00 0.00 0.00 4.17
4574 6459 7.856398 TCGTGTTTTATTTTAAAGATCGCAACA 59.144 29.630 0.00 0.00 0.00 3.33
4575 6460 8.473016 CGTGTTTTATTTTAAAGATCGCAACAA 58.527 29.630 0.00 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 3.240606 GAACGACGTCGACACCCGA 62.241 63.158 41.52 0.00 46.35 5.14
4 5 2.429739 GGAACGACGTCGACACCC 60.430 66.667 41.52 28.80 43.02 4.61
38 39 4.301027 GATCTACCTGCGGGGCGG 62.301 72.222 18.00 5.42 39.10 6.13
39 40 4.301027 GGATCTACCTGCGGGGCG 62.301 72.222 18.00 6.26 39.10 6.13
40 41 4.301027 CGGATCTACCTGCGGGGC 62.301 72.222 18.00 0.00 39.10 5.80
41 42 3.616721 CCGGATCTACCTGCGGGG 61.617 72.222 18.00 5.11 45.32 5.73
44 45 1.528542 TCCTCCGGATCTACCTGCG 60.529 63.158 3.57 0.00 36.31 5.18
45 46 0.755698 TGTCCTCCGGATCTACCTGC 60.756 60.000 3.57 0.00 32.73 4.85
46 47 1.615883 CATGTCCTCCGGATCTACCTG 59.384 57.143 3.57 3.30 32.73 4.00
47 48 1.481428 CCATGTCCTCCGGATCTACCT 60.481 57.143 3.57 0.00 32.73 3.08
48 49 0.969894 CCATGTCCTCCGGATCTACC 59.030 60.000 3.57 0.00 32.73 3.18
49 50 1.889829 CTCCATGTCCTCCGGATCTAC 59.110 57.143 3.57 4.15 32.73 2.59
50 51 1.203063 CCTCCATGTCCTCCGGATCTA 60.203 57.143 3.57 0.00 32.73 1.98
51 52 0.470833 CCTCCATGTCCTCCGGATCT 60.471 60.000 3.57 0.00 32.73 2.75
52 53 2.053618 CCTCCATGTCCTCCGGATC 58.946 63.158 3.57 0.00 32.73 3.36
53 54 2.143419 GCCTCCATGTCCTCCGGAT 61.143 63.158 3.57 0.00 32.73 4.18
54 55 2.764128 GCCTCCATGTCCTCCGGA 60.764 66.667 2.93 2.93 0.00 5.14
55 56 4.227134 CGCCTCCATGTCCTCCGG 62.227 72.222 0.00 0.00 0.00 5.14
56 57 4.227134 CCGCCTCCATGTCCTCCG 62.227 72.222 0.00 0.00 0.00 4.63
57 58 2.764128 TCCGCCTCCATGTCCTCC 60.764 66.667 0.00 0.00 0.00 4.30
58 59 2.801631 CCTCCGCCTCCATGTCCTC 61.802 68.421 0.00 0.00 0.00 3.71
59 60 2.765807 CCTCCGCCTCCATGTCCT 60.766 66.667 0.00 0.00 0.00 3.85
60 61 4.554036 GCCTCCGCCTCCATGTCC 62.554 72.222 0.00 0.00 0.00 4.02
61 62 4.899239 CGCCTCCGCCTCCATGTC 62.899 72.222 0.00 0.00 0.00 3.06
67 68 3.902086 GTACTCCGCCTCCGCCTC 61.902 72.222 0.00 0.00 0.00 4.70
70 71 3.718210 CTTGGTACTCCGCCTCCGC 62.718 68.421 0.00 0.00 36.30 5.54
71 72 2.494918 CTTGGTACTCCGCCTCCG 59.505 66.667 0.00 0.00 36.30 4.63
72 73 2.187163 GCTTGGTACTCCGCCTCC 59.813 66.667 0.00 0.00 36.30 4.30
73 74 2.187163 GGCTTGGTACTCCGCCTC 59.813 66.667 11.03 0.00 37.30 4.70
74 75 3.771160 CGGCTTGGTACTCCGCCT 61.771 66.667 14.63 0.00 37.85 5.52
77 78 4.832608 GGGCGGCTTGGTACTCCG 62.833 72.222 9.56 10.47 45.46 4.63
78 79 3.387225 GAGGGCGGCTTGGTACTCC 62.387 68.421 9.56 0.00 0.00 3.85
79 80 2.187163 GAGGGCGGCTTGGTACTC 59.813 66.667 9.56 1.50 0.00 2.59
80 81 3.771160 CGAGGGCGGCTTGGTACT 61.771 66.667 9.56 0.00 0.00 2.73
81 82 3.718210 CTCGAGGGCGGCTTGGTAC 62.718 68.421 9.56 0.00 38.28 3.34
82 83 3.458163 CTCGAGGGCGGCTTGGTA 61.458 66.667 9.56 0.00 38.28 3.25
85 86 4.521062 CTCCTCGAGGGCGGCTTG 62.521 72.222 30.80 9.04 38.28 4.01
94 95 3.847602 CTGCAGGGCCTCCTCGAG 61.848 72.222 0.95 5.13 42.67 4.04
97 98 4.792804 GTGCTGCAGGGCCTCCTC 62.793 72.222 17.12 0.00 42.67 3.71
106 107 3.561213 CTCCATCGCGTGCTGCAG 61.561 66.667 10.11 10.11 46.97 4.41
109 110 3.430565 TAGCCTCCATCGCGTGCTG 62.431 63.158 5.77 2.34 33.63 4.41
110 111 3.144120 CTAGCCTCCATCGCGTGCT 62.144 63.158 5.77 8.47 36.11 4.40
111 112 2.659897 CTAGCCTCCATCGCGTGC 60.660 66.667 5.77 0.57 0.00 5.34
112 113 2.659897 GCTAGCCTCCATCGCGTG 60.660 66.667 5.77 3.64 0.00 5.34
113 114 3.917760 GGCTAGCCTCCATCGCGT 61.918 66.667 27.17 0.00 0.00 6.01
125 126 3.291383 CCTCCTCGAGGCGGCTAG 61.291 72.222 26.87 17.69 43.29 3.42
133 134 2.179517 GTGCGTGTCCTCCTCGAG 59.820 66.667 5.13 5.13 0.00 4.04
134 135 2.282251 AGTGCGTGTCCTCCTCGA 60.282 61.111 0.00 0.00 0.00 4.04
135 136 2.126307 CAGTGCGTGTCCTCCTCG 60.126 66.667 0.00 0.00 0.00 4.63
136 137 2.262915 CCAGTGCGTGTCCTCCTC 59.737 66.667 0.00 0.00 0.00 3.71
137 138 3.314331 CCCAGTGCGTGTCCTCCT 61.314 66.667 0.00 0.00 0.00 3.69
138 139 2.660064 ATCCCAGTGCGTGTCCTCC 61.660 63.158 0.00 0.00 0.00 4.30
139 140 1.448540 CATCCCAGTGCGTGTCCTC 60.449 63.158 0.00 0.00 0.00 3.71
140 141 2.665000 CATCCCAGTGCGTGTCCT 59.335 61.111 0.00 0.00 0.00 3.85
141 142 2.436646 CCATCCCAGTGCGTGTCC 60.437 66.667 0.00 0.00 0.00 4.02
142 143 2.436646 CCCATCCCAGTGCGTGTC 60.437 66.667 0.00 0.00 0.00 3.67
143 144 4.722700 GCCCATCCCAGTGCGTGT 62.723 66.667 0.00 0.00 0.00 4.49
144 145 4.415150 AGCCCATCCCAGTGCGTG 62.415 66.667 0.00 0.00 0.00 5.34
145 146 4.415150 CAGCCCATCCCAGTGCGT 62.415 66.667 0.00 0.00 0.00 5.24
147 148 4.828296 CCCAGCCCATCCCAGTGC 62.828 72.222 0.00 0.00 0.00 4.40
148 149 4.133373 CCCCAGCCCATCCCAGTG 62.133 72.222 0.00 0.00 0.00 3.66
152 153 4.847367 CTTGCCCCAGCCCATCCC 62.847 72.222 0.00 0.00 38.69 3.85
153 154 4.066139 ACTTGCCCCAGCCCATCC 62.066 66.667 0.00 0.00 38.69 3.51
154 155 2.440980 GACTTGCCCCAGCCCATC 60.441 66.667 0.00 0.00 38.69 3.51
155 156 4.066139 GGACTTGCCCCAGCCCAT 62.066 66.667 0.00 0.00 38.69 4.00
157 158 3.984732 AAGGACTTGCCCCAGCCC 61.985 66.667 0.00 0.00 38.69 5.19
158 159 2.677875 CAAGGACTTGCCCCAGCC 60.678 66.667 0.00 0.00 38.69 4.85
159 160 1.973812 GACAAGGACTTGCCCCAGC 60.974 63.158 11.73 0.00 44.03 4.85
160 161 1.303643 GGACAAGGACTTGCCCCAG 60.304 63.158 11.73 0.00 44.03 4.45
161 162 0.474854 TAGGACAAGGACTTGCCCCA 60.475 55.000 12.90 0.00 43.07 4.96
162 163 0.919710 ATAGGACAAGGACTTGCCCC 59.080 55.000 12.90 13.02 43.07 5.80
163 164 2.369394 CAATAGGACAAGGACTTGCCC 58.631 52.381 11.73 10.40 42.49 5.36
164 165 2.369394 CCAATAGGACAAGGACTTGCC 58.631 52.381 11.73 13.00 44.03 4.52
165 166 1.745653 GCCAATAGGACAAGGACTTGC 59.254 52.381 11.73 5.21 38.62 4.01
166 167 2.009774 CGCCAATAGGACAAGGACTTG 58.990 52.381 10.34 10.34 39.91 3.16
167 168 1.065418 CCGCCAATAGGACAAGGACTT 60.065 52.381 0.00 0.00 36.89 3.01
168 169 0.541863 CCGCCAATAGGACAAGGACT 59.458 55.000 0.00 0.00 36.89 3.85
169 170 1.095807 GCCGCCAATAGGACAAGGAC 61.096 60.000 0.00 0.00 36.89 3.85
170 171 1.223487 GCCGCCAATAGGACAAGGA 59.777 57.895 0.00 0.00 36.89 3.36
171 172 2.180204 CGCCGCCAATAGGACAAGG 61.180 63.158 0.00 0.00 36.89 3.61
172 173 2.180204 CCGCCGCCAATAGGACAAG 61.180 63.158 0.00 0.00 36.89 3.16
173 174 2.124901 CCGCCGCCAATAGGACAA 60.125 61.111 0.00 0.00 36.89 3.18
174 175 4.169696 CCCGCCGCCAATAGGACA 62.170 66.667 0.00 0.00 36.89 4.02
175 176 4.929707 CCCCGCCGCCAATAGGAC 62.930 72.222 0.00 0.00 36.89 3.85
178 179 4.929707 GTCCCCCGCCGCCAATAG 62.930 72.222 0.00 0.00 0.00 1.73
195 196 3.432051 GAGCGGGATGTGGACGGAG 62.432 68.421 0.00 0.00 0.00 4.63
196 197 3.458163 GAGCGGGATGTGGACGGA 61.458 66.667 0.00 0.00 0.00 4.69
197 198 2.907897 GAAGAGCGGGATGTGGACGG 62.908 65.000 0.00 0.00 0.00 4.79
198 199 1.519455 GAAGAGCGGGATGTGGACG 60.519 63.158 0.00 0.00 0.00 4.79
199 200 1.519455 CGAAGAGCGGGATGTGGAC 60.519 63.158 0.00 0.00 36.03 4.02
200 201 1.982395 ACGAAGAGCGGGATGTGGA 60.982 57.895 0.00 0.00 46.49 4.02
201 202 2.579201 ACGAAGAGCGGGATGTGG 59.421 61.111 0.00 0.00 46.49 4.17
210 211 3.426568 GGTGGCAGCACGAAGAGC 61.427 66.667 12.58 0.00 46.67 4.09
211 212 3.114616 CGGTGGCAGCACGAAGAG 61.115 66.667 17.80 0.00 0.00 2.85
238 239 4.530857 CTTGGGCTAGACGGGCGG 62.531 72.222 0.00 0.00 0.00 6.13
240 241 4.858680 GGCTTGGGCTAGACGGGC 62.859 72.222 0.00 0.00 38.73 6.13
241 242 4.530857 CGGCTTGGGCTAGACGGG 62.531 72.222 7.40 0.00 42.95 5.28
243 244 3.432051 CTCCGGCTTGGGCTAGACG 62.432 68.421 0.00 8.18 46.23 4.18
244 245 2.501610 CTCCGGCTTGGGCTAGAC 59.498 66.667 0.00 0.00 38.76 2.59
245 246 3.470888 GCTCCGGCTTGGGCTAGA 61.471 66.667 0.00 0.00 38.76 2.43
246 247 4.554036 GGCTCCGGCTTGGGCTAG 62.554 72.222 0.00 0.00 38.76 3.42
288 289 2.484287 AAATGGGTGGAGGCGTGGAG 62.484 60.000 0.00 0.00 0.00 3.86
289 290 2.534396 AAATGGGTGGAGGCGTGGA 61.534 57.895 0.00 0.00 0.00 4.02
290 291 2.035626 AAATGGGTGGAGGCGTGG 59.964 61.111 0.00 0.00 0.00 4.94
291 292 2.342650 CCAAATGGGTGGAGGCGTG 61.343 63.158 0.00 0.00 41.65 5.34
292 293 2.035626 CCAAATGGGTGGAGGCGT 59.964 61.111 0.00 0.00 41.65 5.68
293 294 3.451894 GCCAAATGGGTGGAGGCG 61.452 66.667 0.90 0.00 41.65 5.52
294 295 3.076916 GGCCAAATGGGTGGAGGC 61.077 66.667 0.00 0.00 41.65 4.70
295 296 2.755469 CGGCCAAATGGGTGGAGG 60.755 66.667 2.24 0.00 41.65 4.30
296 297 2.755469 CCGGCCAAATGGGTGGAG 60.755 66.667 2.24 0.00 41.65 3.86
297 298 3.260888 TCCGGCCAAATGGGTGGA 61.261 61.111 2.24 0.00 41.65 4.02
298 299 2.755469 CTCCGGCCAAATGGGTGG 60.755 66.667 2.24 0.00 42.05 4.61
299 300 2.755469 CCTCCGGCCAAATGGGTG 60.755 66.667 2.24 0.00 39.65 4.61
300 301 2.938798 TCCTCCGGCCAAATGGGT 60.939 61.111 2.24 0.00 39.65 4.51
301 302 2.124151 CTCCTCCGGCCAAATGGG 60.124 66.667 2.24 0.00 40.85 4.00
302 303 2.124151 CCTCCTCCGGCCAAATGG 60.124 66.667 2.24 0.00 38.53 3.16
303 304 2.830370 GCCTCCTCCGGCCAAATG 60.830 66.667 2.24 0.00 44.41 2.32
310 311 2.907917 CGAGTAGGCCTCCTCCGG 60.908 72.222 18.93 2.91 36.82 5.14
311 312 2.124236 ACGAGTAGGCCTCCTCCG 60.124 66.667 18.93 15.62 36.82 4.63
312 313 2.128507 CCACGAGTAGGCCTCCTCC 61.129 68.421 18.93 2.61 36.82 4.30
313 314 1.076923 TCCACGAGTAGGCCTCCTC 60.077 63.158 15.23 15.23 36.82 3.71
314 315 1.380112 GTCCACGAGTAGGCCTCCT 60.380 63.158 9.68 1.09 36.82 3.69
315 316 2.772691 CGTCCACGAGTAGGCCTCC 61.773 68.421 9.68 0.00 43.02 4.30
316 317 2.772691 CCGTCCACGAGTAGGCCTC 61.773 68.421 9.68 0.21 43.02 4.70
317 318 2.754658 CCGTCCACGAGTAGGCCT 60.755 66.667 11.78 11.78 43.02 5.19
318 319 3.834799 CCCGTCCACGAGTAGGCC 61.835 72.222 0.00 0.00 43.02 5.19
319 320 4.509737 GCCCGTCCACGAGTAGGC 62.510 72.222 0.00 0.91 43.02 3.93
320 321 3.834799 GGCCCGTCCACGAGTAGG 61.835 72.222 0.00 0.00 43.02 3.18
321 322 3.064987 CTGGCCCGTCCACGAGTAG 62.065 68.421 0.00 0.00 40.72 2.57
322 323 2.482796 TACTGGCCCGTCCACGAGTA 62.483 60.000 1.80 0.00 40.72 2.59
323 324 3.873679 TACTGGCCCGTCCACGAGT 62.874 63.158 1.80 0.00 40.72 4.18
324 325 3.066190 TACTGGCCCGTCCACGAG 61.066 66.667 1.80 0.00 40.72 4.18
325 326 3.376078 GTACTGGCCCGTCCACGA 61.376 66.667 1.80 0.00 40.72 4.35
326 327 4.446413 GGTACTGGCCCGTCCACG 62.446 72.222 1.80 0.00 40.72 4.94
327 328 4.446413 CGGTACTGGCCCGTCCAC 62.446 72.222 1.80 0.00 40.72 4.02
333 334 4.814294 CACTCGCGGTACTGGCCC 62.814 72.222 6.13 0.00 0.00 5.80
334 335 4.814294 CCACTCGCGGTACTGGCC 62.814 72.222 6.13 0.00 0.00 5.36
335 336 4.814294 CCCACTCGCGGTACTGGC 62.814 72.222 6.13 1.53 0.00 4.85
336 337 3.379445 ACCCACTCGCGGTACTGG 61.379 66.667 6.13 5.78 0.00 4.00
337 338 2.126071 CACCCACTCGCGGTACTG 60.126 66.667 6.13 0.00 30.42 2.74
338 339 2.282674 TCACCCACTCGCGGTACT 60.283 61.111 6.13 0.00 30.42 2.73
339 340 2.181021 CTCACCCACTCGCGGTAC 59.819 66.667 6.13 0.00 30.42 3.34
340 341 3.755628 GCTCACCCACTCGCGGTA 61.756 66.667 6.13 0.00 30.42 4.02
346 347 3.941657 GAGGCGTGCTCACCCACTC 62.942 68.421 9.21 4.67 33.60 3.51
347 348 4.008933 GAGGCGTGCTCACCCACT 62.009 66.667 9.21 0.00 33.60 4.00
360 361 2.104530 GCGAAGTAGACGGGAGGC 59.895 66.667 0.00 0.00 39.17 4.70
361 362 2.806237 GGCGAAGTAGACGGGAGG 59.194 66.667 0.00 0.00 0.00 4.30
362 363 2.408022 CGGCGAAGTAGACGGGAG 59.592 66.667 0.00 0.00 39.34 4.30
363 364 3.818787 GCGGCGAAGTAGACGGGA 61.819 66.667 12.98 0.00 44.07 5.14
365 366 4.170062 TCGCGGCGAAGTAGACGG 62.170 66.667 24.33 0.00 44.07 4.79
367 368 2.943034 CGTCGCGGCGAAGTAGAC 60.943 66.667 32.09 13.02 37.72 2.59
368 369 4.824166 GCGTCGCGGCGAAGTAGA 62.824 66.667 39.63 7.61 37.72 2.59
381 382 3.708220 CTTCTCCTGCTCCGGCGTC 62.708 68.421 6.01 0.00 42.25 5.19
382 383 3.764466 CTTCTCCTGCTCCGGCGT 61.764 66.667 6.01 0.00 42.25 5.68
383 384 4.521062 CCTTCTCCTGCTCCGGCG 62.521 72.222 0.00 0.00 42.25 6.46
384 385 3.378399 GACCTTCTCCTGCTCCGGC 62.378 68.421 0.00 0.00 39.26 6.13
385 386 0.395862 TAGACCTTCTCCTGCTCCGG 60.396 60.000 0.00 0.00 0.00 5.14
386 387 1.611491 GATAGACCTTCTCCTGCTCCG 59.389 57.143 0.00 0.00 0.00 4.63
387 388 2.890945 GAGATAGACCTTCTCCTGCTCC 59.109 54.545 0.00 0.00 34.75 4.70
388 389 2.552315 CGAGATAGACCTTCTCCTGCTC 59.448 54.545 0.00 0.00 37.00 4.26
389 390 2.173782 TCGAGATAGACCTTCTCCTGCT 59.826 50.000 0.00 0.00 37.00 4.24
390 391 2.552315 CTCGAGATAGACCTTCTCCTGC 59.448 54.545 6.58 0.00 37.00 4.85
391 392 2.552315 GCTCGAGATAGACCTTCTCCTG 59.448 54.545 18.75 0.00 37.00 3.86
392 393 2.808933 CGCTCGAGATAGACCTTCTCCT 60.809 54.545 18.75 0.00 37.00 3.69
393 394 1.533731 CGCTCGAGATAGACCTTCTCC 59.466 57.143 18.75 0.00 37.00 3.71
394 395 1.069500 GCGCTCGAGATAGACCTTCTC 60.069 57.143 18.75 0.00 36.97 2.87
395 396 0.948678 GCGCTCGAGATAGACCTTCT 59.051 55.000 18.75 0.00 0.00 2.85
396 397 0.948678 AGCGCTCGAGATAGACCTTC 59.051 55.000 18.75 0.00 0.00 3.46
397 398 0.665835 CAGCGCTCGAGATAGACCTT 59.334 55.000 18.75 0.00 0.00 3.50
398 399 1.169661 CCAGCGCTCGAGATAGACCT 61.170 60.000 18.75 0.00 0.00 3.85
399 400 1.167155 TCCAGCGCTCGAGATAGACC 61.167 60.000 18.75 0.00 0.00 3.85
400 401 0.663688 TTCCAGCGCTCGAGATAGAC 59.336 55.000 18.75 0.00 0.00 2.59
401 402 0.947960 CTTCCAGCGCTCGAGATAGA 59.052 55.000 18.75 1.62 0.00 1.98
402 403 0.039617 CCTTCCAGCGCTCGAGATAG 60.040 60.000 18.75 7.64 0.00 2.08
403 404 0.465642 TCCTTCCAGCGCTCGAGATA 60.466 55.000 18.75 0.00 0.00 1.98
404 405 1.323271 TTCCTTCCAGCGCTCGAGAT 61.323 55.000 18.75 0.00 0.00 2.75
405 406 1.977009 TTCCTTCCAGCGCTCGAGA 60.977 57.895 18.75 1.13 0.00 4.04
406 407 1.807573 GTTCCTTCCAGCGCTCGAG 60.808 63.158 7.13 8.45 0.00 4.04
407 408 2.261671 GTTCCTTCCAGCGCTCGA 59.738 61.111 7.13 2.57 0.00 4.04
408 409 2.048222 TGTTCCTTCCAGCGCTCG 60.048 61.111 7.13 0.00 0.00 5.03
409 410 1.004440 AGTGTTCCTTCCAGCGCTC 60.004 57.895 7.13 0.00 0.00 5.03
410 411 1.302033 CAGTGTTCCTTCCAGCGCT 60.302 57.895 2.64 2.64 0.00 5.92
411 412 2.328099 CCAGTGTTCCTTCCAGCGC 61.328 63.158 0.00 0.00 0.00 5.92
412 413 2.328099 GCCAGTGTTCCTTCCAGCG 61.328 63.158 0.00 0.00 0.00 5.18
413 414 1.973812 GGCCAGTGTTCCTTCCAGC 60.974 63.158 0.00 0.00 0.00 4.85
414 415 1.672356 CGGCCAGTGTTCCTTCCAG 60.672 63.158 2.24 0.00 0.00 3.86
415 416 2.144078 TCGGCCAGTGTTCCTTCCA 61.144 57.895 2.24 0.00 0.00 3.53
416 417 1.671379 GTCGGCCAGTGTTCCTTCC 60.671 63.158 2.24 0.00 0.00 3.46
417 418 0.951040 CTGTCGGCCAGTGTTCCTTC 60.951 60.000 2.24 0.00 36.37 3.46
418 419 1.071471 CTGTCGGCCAGTGTTCCTT 59.929 57.895 2.24 0.00 36.37 3.36
419 420 2.743718 CTGTCGGCCAGTGTTCCT 59.256 61.111 2.24 0.00 36.37 3.36
420 421 3.050275 GCTGTCGGCCAGTGTTCC 61.050 66.667 2.24 0.00 43.55 3.62
421 422 1.845809 CTTGCTGTCGGCCAGTGTTC 61.846 60.000 2.24 0.00 43.55 3.18
422 423 1.893808 CTTGCTGTCGGCCAGTGTT 60.894 57.895 2.24 0.00 43.55 3.32
423 424 2.281070 CTTGCTGTCGGCCAGTGT 60.281 61.111 2.24 0.00 43.55 3.55
424 425 3.052082 CCTTGCTGTCGGCCAGTG 61.052 66.667 2.24 0.00 43.55 3.66
425 426 3.241530 TCCTTGCTGTCGGCCAGT 61.242 61.111 2.24 0.00 43.55 4.00
426 427 2.435586 CTCCTTGCTGTCGGCCAG 60.436 66.667 2.24 0.00 44.53 4.85
427 428 4.704833 GCTCCTTGCTGTCGGCCA 62.705 66.667 2.24 0.00 40.92 5.36
428 429 4.704833 TGCTCCTTGCTGTCGGCC 62.705 66.667 0.00 0.00 43.37 6.13
429 430 2.866085 ATCTGCTCCTTGCTGTCGGC 62.866 60.000 0.00 0.00 43.37 5.54
430 431 0.461548 TATCTGCTCCTTGCTGTCGG 59.538 55.000 0.00 0.00 43.37 4.79
431 432 2.133553 CATATCTGCTCCTTGCTGTCG 58.866 52.381 0.00 0.00 43.37 4.35
432 433 1.872313 GCATATCTGCTCCTTGCTGTC 59.128 52.381 0.00 0.00 45.32 3.51
433 434 1.964552 GCATATCTGCTCCTTGCTGT 58.035 50.000 0.00 0.00 45.32 4.40
444 445 2.614779 CATGGCCTCGTAGCATATCTG 58.385 52.381 3.32 0.00 0.00 2.90
445 446 1.066573 GCATGGCCTCGTAGCATATCT 60.067 52.381 3.32 0.00 0.00 1.98
446 447 1.066573 AGCATGGCCTCGTAGCATATC 60.067 52.381 3.32 0.00 0.00 1.63
447 448 0.979665 AGCATGGCCTCGTAGCATAT 59.020 50.000 3.32 0.00 0.00 1.78
448 449 0.318441 GAGCATGGCCTCGTAGCATA 59.682 55.000 3.32 0.00 0.00 3.14
449 450 1.070445 GAGCATGGCCTCGTAGCAT 59.930 57.895 3.32 0.00 0.00 3.79
450 451 2.501128 GAGCATGGCCTCGTAGCA 59.499 61.111 3.32 0.00 0.00 3.49
451 452 2.280457 GGAGCATGGCCTCGTAGC 60.280 66.667 3.32 0.34 32.57 3.58
452 453 0.811616 GTTGGAGCATGGCCTCGTAG 60.812 60.000 3.32 0.00 32.57 3.51
453 454 1.220749 GTTGGAGCATGGCCTCGTA 59.779 57.895 3.32 0.00 32.57 3.43
454 455 2.045926 GTTGGAGCATGGCCTCGT 60.046 61.111 3.32 0.00 32.57 4.18
455 456 2.825836 GGTTGGAGCATGGCCTCG 60.826 66.667 3.32 0.00 32.57 4.63
456 457 2.819984 TTCGGTTGGAGCATGGCCTC 62.820 60.000 3.32 0.00 0.00 4.70
457 458 2.826777 CTTCGGTTGGAGCATGGCCT 62.827 60.000 3.32 0.00 0.00 5.19
458 459 2.361104 TTCGGTTGGAGCATGGCC 60.361 61.111 0.00 0.00 0.00 5.36
459 460 3.056313 GCTTCGGTTGGAGCATGGC 62.056 63.158 0.00 0.00 0.00 4.40
460 461 0.962356 AAGCTTCGGTTGGAGCATGG 60.962 55.000 0.00 0.00 0.00 3.66
461 462 0.449388 GAAGCTTCGGTTGGAGCATG 59.551 55.000 11.40 0.00 0.00 4.06
462 463 0.326264 AGAAGCTTCGGTTGGAGCAT 59.674 50.000 20.43 0.00 0.00 3.79
463 464 0.973632 TAGAAGCTTCGGTTGGAGCA 59.026 50.000 20.43 0.00 0.00 4.26
464 465 1.360820 GTAGAAGCTTCGGTTGGAGC 58.639 55.000 20.43 2.96 0.00 4.70
465 466 1.630148 CGTAGAAGCTTCGGTTGGAG 58.370 55.000 20.43 5.88 0.00 3.86
466 467 0.389426 GCGTAGAAGCTTCGGTTGGA 60.389 55.000 20.43 0.94 0.00 3.53
467 468 1.359459 GGCGTAGAAGCTTCGGTTGG 61.359 60.000 20.43 10.53 37.29 3.77
468 469 0.389948 AGGCGTAGAAGCTTCGGTTG 60.390 55.000 20.43 12.68 37.29 3.77
469 470 0.320697 AAGGCGTAGAAGCTTCGGTT 59.679 50.000 20.43 6.37 37.29 4.44
524 525 0.587985 GTGGTGTGTTTGTTCGACGC 60.588 55.000 0.00 0.00 0.00 5.19
534 535 3.023119 TCTGCTTTTGATGTGGTGTGTT 58.977 40.909 0.00 0.00 0.00 3.32
537 538 1.610522 GCTCTGCTTTTGATGTGGTGT 59.389 47.619 0.00 0.00 0.00 4.16
538 539 1.610038 TGCTCTGCTTTTGATGTGGTG 59.390 47.619 0.00 0.00 0.00 4.17
539 540 1.985473 TGCTCTGCTTTTGATGTGGT 58.015 45.000 0.00 0.00 0.00 4.16
540 541 2.925306 GCTTGCTCTGCTTTTGATGTGG 60.925 50.000 0.00 0.00 0.00 4.17
541 542 2.325761 GCTTGCTCTGCTTTTGATGTG 58.674 47.619 0.00 0.00 0.00 3.21
544 545 1.624336 TGGCTTGCTCTGCTTTTGAT 58.376 45.000 0.00 0.00 0.00 2.57
545 546 1.338973 CTTGGCTTGCTCTGCTTTTGA 59.661 47.619 0.00 0.00 0.00 2.69
546 547 1.779569 CTTGGCTTGCTCTGCTTTTG 58.220 50.000 0.00 0.00 0.00 2.44
547 548 0.033090 GCTTGGCTTGCTCTGCTTTT 59.967 50.000 0.00 0.00 0.00 2.27
548 549 1.111116 TGCTTGGCTTGCTCTGCTTT 61.111 50.000 4.23 0.00 0.00 3.51
549 550 1.529948 TGCTTGGCTTGCTCTGCTT 60.530 52.632 4.23 0.00 0.00 3.91
550 551 2.114625 TGCTTGGCTTGCTCTGCT 59.885 55.556 4.23 0.00 0.00 4.24
552 553 1.863662 CTGGTGCTTGGCTTGCTCTG 61.864 60.000 4.23 0.00 0.00 3.35
553 554 1.602888 CTGGTGCTTGGCTTGCTCT 60.603 57.895 4.23 0.00 0.00 4.09
554 555 1.601759 TCTGGTGCTTGGCTTGCTC 60.602 57.895 4.23 0.91 0.00 4.26
555 556 1.900498 GTCTGGTGCTTGGCTTGCT 60.900 57.895 4.23 0.00 0.00 3.91
556 557 2.138656 CTGTCTGGTGCTTGGCTTGC 62.139 60.000 0.00 0.00 0.00 4.01
557 558 1.521450 CCTGTCTGGTGCTTGGCTTG 61.521 60.000 0.00 0.00 0.00 4.01
558 559 1.228367 CCTGTCTGGTGCTTGGCTT 60.228 57.895 0.00 0.00 0.00 4.35
559 560 2.433446 CCTGTCTGGTGCTTGGCT 59.567 61.111 0.00 0.00 0.00 4.75
560 561 3.368571 GCCTGTCTGGTGCTTGGC 61.369 66.667 0.00 0.00 38.35 4.52
561 562 1.673665 GAGCCTGTCTGGTGCTTGG 60.674 63.158 0.00 0.00 38.35 3.61
562 563 2.031516 CGAGCCTGTCTGGTGCTTG 61.032 63.158 0.00 0.00 38.35 4.01
563 564 2.210013 TCGAGCCTGTCTGGTGCTT 61.210 57.895 0.00 0.00 38.35 3.91
676 677 0.968901 TACCTGGCCTCACGTCGATT 60.969 55.000 3.32 0.00 0.00 3.34
699 700 2.111999 CTGGAGTGGACGGCCTCAAA 62.112 60.000 9.82 0.00 34.31 2.69
739 743 8.998377 CGGAATTGTTTTCCTTCCAAATATTTT 58.002 29.630 0.00 0.00 38.69 1.82
741 745 6.593770 GCGGAATTGTTTTCCTTCCAAATATT 59.406 34.615 3.13 0.00 38.69 1.28
743 747 5.245075 AGCGGAATTGTTTTCCTTCCAAATA 59.755 36.000 3.13 0.00 38.69 1.40
754 770 3.368495 GACAACGAAGCGGAATTGTTTT 58.632 40.909 0.00 0.00 35.47 2.43
784 800 1.267383 GGAATCCATTCGTTCGTTCGC 60.267 52.381 0.00 0.00 37.67 4.70
785 801 1.326548 GGGAATCCATTCGTTCGTTCG 59.673 52.381 0.09 0.00 37.67 3.95
786 802 2.095372 GTGGGAATCCATTCGTTCGTTC 59.905 50.000 0.09 0.00 46.09 3.95
787 803 2.081462 GTGGGAATCCATTCGTTCGTT 58.919 47.619 0.09 0.00 46.09 3.85
793 809 2.358898 GTCCAATGTGGGAATCCATTCG 59.641 50.000 0.09 0.00 46.09 3.34
831 851 5.063691 CGTGTGTCTAGTCTTAGTCTACAGG 59.936 48.000 0.00 0.00 0.00 4.00
848 868 3.103911 CCCGCGAAGACGTGTGTC 61.104 66.667 8.23 0.00 46.68 3.67
863 883 3.609258 CGTACTTATGCGACGCCC 58.391 61.111 18.69 0.00 35.74 6.13
908 928 2.203394 AGTGGCAGGCAGGTTGTG 60.203 61.111 0.00 0.00 0.00 3.33
909 929 2.203394 CAGTGGCAGGCAGGTTGT 60.203 61.111 0.00 0.00 0.00 3.32
929 949 2.951475 TTTTTGCTCGCTCGTGGGGT 62.951 55.000 1.51 0.00 0.00 4.95
930 950 1.586154 ATTTTTGCTCGCTCGTGGGG 61.586 55.000 1.51 0.00 0.00 4.96
932 952 0.798776 AGATTTTTGCTCGCTCGTGG 59.201 50.000 0.00 0.00 0.00 4.94
933 953 2.150797 GAGATTTTTGCTCGCTCGTG 57.849 50.000 0.00 0.00 0.00 4.35
961 993 1.026718 CCTGCTCGCGGGATCTTTTT 61.027 55.000 12.03 0.00 45.10 1.94
1136 1192 5.729229 TCAATGGGTAGACAATCTAAAGGGA 59.271 40.000 0.00 0.00 29.58 4.20
1148 1204 1.771255 AGGGAGCATCAATGGGTAGAC 59.229 52.381 0.00 0.00 36.25 2.59
1167 1249 8.283291 CAGGTAAAACTAAGTAAAACAGAGCAG 58.717 37.037 0.00 0.00 0.00 4.24
1170 1252 8.672823 ACCAGGTAAAACTAAGTAAAACAGAG 57.327 34.615 0.00 0.00 0.00 3.35
1200 1286 6.412362 AGATCTTAGCCGAGTCAAACATAT 57.588 37.500 0.00 0.00 0.00 1.78
1212 1298 1.066303 AGACAAGCGAGATCTTAGCCG 59.934 52.381 17.14 8.51 0.00 5.52
1320 1421 2.372172 AGGAGGTAGAACCAACCAACTG 59.628 50.000 12.49 0.00 41.95 3.16
1361 1465 1.168714 GCACTTGAAACCTAGCCCTG 58.831 55.000 0.00 0.00 0.00 4.45
1362 1466 0.771127 TGCACTTGAAACCTAGCCCT 59.229 50.000 0.00 0.00 0.00 5.19
1382 1500 7.878477 AAATTTCATCACAAGTAAGCACATG 57.122 32.000 0.00 0.00 0.00 3.21
1479 1823 3.991773 GCCGGAAAATAAACTTTTGGTCC 59.008 43.478 5.05 0.00 0.00 4.46
1628 1972 5.465724 GGCCCAATACAGTTCGAAATAGTAG 59.534 44.000 0.00 0.00 0.00 2.57
1648 1992 1.310216 AAATTACGAAGCCACGGCCC 61.310 55.000 3.95 0.00 43.17 5.80
1649 1993 0.524414 AAAATTACGAAGCCACGGCC 59.476 50.000 3.95 0.00 43.17 6.13
1650 1994 2.341318 AAAAATTACGAAGCCACGGC 57.659 45.000 0.00 0.00 42.33 5.68
1675 2024 1.635487 CAGTGGATCTTCCTTCCCCAA 59.365 52.381 0.00 0.00 37.46 4.12
1752 2106 7.149569 ACTGAACATACAAACTCATGGATTG 57.850 36.000 0.00 0.00 0.00 2.67
1803 2158 4.880886 AAACCGTAAAAAGTAACGCTGT 57.119 36.364 0.00 0.00 37.78 4.40
1818 2177 8.465999 TGATGCAATATAATCTTTCAAAACCGT 58.534 29.630 0.00 0.00 0.00 4.83
1912 2271 4.034510 GCCTGGTTCATCGAAGTCATTTAG 59.965 45.833 0.00 0.00 0.00 1.85
2099 2458 6.375736 CCGATATAATGAAGTCTGCTCTCCTA 59.624 42.308 0.00 0.00 0.00 2.94
2202 2561 0.603569 ACGGCTACAGAAGACCAGTG 59.396 55.000 0.00 0.00 0.00 3.66
2256 2615 1.627834 AGGAGAGCCAAGACCAAAGAG 59.372 52.381 0.00 0.00 36.29 2.85
2447 2806 2.912771 TGTATTCCATTACGCTGTGGG 58.087 47.619 1.35 0.00 36.15 4.61
2454 2813 6.291743 GCATGTTGCAATTGTATTCCATTACG 60.292 38.462 0.59 0.00 44.26 3.18
2474 2833 5.957842 TTGTTCTTAATCGGAAAGCATGT 57.042 34.783 0.00 0.00 0.00 3.21
2532 2891 6.997655 TCCTATGTAACATCCAGTCATCATC 58.002 40.000 0.00 0.00 0.00 2.92
2635 2998 7.196331 GTGAGTTTTACTTGCATTTCAACTCT 58.804 34.615 19.07 2.45 39.49 3.24
2662 3025 2.371841 TCTGACAAATGTAGCAGGTGGT 59.628 45.455 0.00 0.00 0.00 4.16
2678 3041 5.292765 TCAGAGATGTTTCAACTGTCTGAC 58.707 41.667 0.00 0.00 34.67 3.51
2745 3108 4.960938 TGTCAAGTTGCAAGAGAGTATGT 58.039 39.130 0.00 0.00 0.00 2.29
2780 3143 6.312399 TGTAACTTGTAAGCAACAGAATGG 57.688 37.500 0.00 0.00 43.62 3.16
2836 3199 6.406400 CCAGTAGAGCTGCTATTTTAGTCAGT 60.406 42.308 0.15 0.00 43.71 3.41
2910 3273 6.090783 TGTGTACTAGTGAACGCATTTCTAG 58.909 40.000 5.39 4.84 34.97 2.43
2914 3277 4.451096 CCTTGTGTACTAGTGAACGCATTT 59.549 41.667 11.75 0.00 36.13 2.32
2920 3283 3.493503 GTGTGCCTTGTGTACTAGTGAAC 59.506 47.826 5.39 4.22 0.00 3.18
3008 3371 1.612950 TGCATGCTTGTAACCCACTTG 59.387 47.619 20.33 0.00 0.00 3.16
3057 3420 6.549364 TGTGACCCAACTTAAACTGAATGAAT 59.451 34.615 0.00 0.00 0.00 2.57
3118 3481 4.261801 TCACTAAAATACCAAGGCAGAGC 58.738 43.478 0.00 0.00 0.00 4.09
3202 3565 5.839606 ACTAGAGGGAAACTGTAGAACAACT 59.160 40.000 0.00 0.00 43.81 3.16
3228 3591 8.839310 ATCATATAAGCTGAAATACTGACCAC 57.161 34.615 0.00 0.00 0.00 4.16
3229 3592 8.650490 TGATCATATAAGCTGAAATACTGACCA 58.350 33.333 0.00 0.00 0.00 4.02
3230 3593 9.494271 TTGATCATATAAGCTGAAATACTGACC 57.506 33.333 0.00 0.00 0.00 4.02
3263 3626 6.483307 TGTGATCAGTCAACTTCCAGTTAAAG 59.517 38.462 0.00 0.00 36.03 1.85
3330 3693 5.391312 AAACTTGTCAACTTTCTTGTGCT 57.609 34.783 0.00 0.00 0.00 4.40
3386 3749 2.007608 GTTCGACATTAGGGAACAGCC 58.992 52.381 0.00 0.00 39.76 4.85
3387 3750 2.695359 TGTTCGACATTAGGGAACAGC 58.305 47.619 2.02 0.00 43.52 4.40
3419 3782 6.711194 CAGAGAAAGCACCATTGATGAGATAT 59.289 38.462 0.00 0.00 0.00 1.63
3489 3852 5.600898 TGGTTCCTCGTAGATTCCAATGATA 59.399 40.000 0.00 0.00 33.89 2.15
3501 3864 2.761208 AGGAGTCATTGGTTCCTCGTAG 59.239 50.000 4.61 0.00 36.64 3.51
3543 3906 1.734137 GTAATCGCCGAGCCTCTCA 59.266 57.895 0.00 0.00 0.00 3.27
3555 3918 2.555199 CCCTGCTCAAGAAGGTAATCG 58.445 52.381 3.29 0.00 39.36 3.34
3622 3986 3.243501 GGGTATGCGGTAGTACATTTCGA 60.244 47.826 2.06 0.00 0.00 3.71
3687 4052 4.877378 ACTCCAACATAACGAGTAACCA 57.123 40.909 0.00 0.00 35.12 3.67
3692 4057 3.402628 AGCAACTCCAACATAACGAGT 57.597 42.857 0.00 0.00 38.50 4.18
3707 4072 4.074970 CCCCATGACATATAGGAAGCAAC 58.925 47.826 0.00 0.00 0.00 4.17
3785 4153 3.239449 TGCAGGGTATCATCGGTAAGAT 58.761 45.455 0.00 0.00 41.01 2.40
3807 4175 4.481930 TCGTCAACACATTTTCATCCAC 57.518 40.909 0.00 0.00 0.00 4.02
3900 4294 6.460399 GCACCTGCCCGAATTATATTTTGTAA 60.460 38.462 0.00 0.00 34.31 2.41
3923 4317 5.468746 GTGGTACTGTACTTCTGAAATTGCA 59.531 40.000 16.79 0.32 0.00 4.08
3940 4334 0.178068 CCTAGGCGCAATGTGGTACT 59.822 55.000 10.83 0.00 0.00 2.73
3941 4335 0.814010 CCCTAGGCGCAATGTGGTAC 60.814 60.000 10.83 0.00 0.00 3.34
3942 4336 1.268992 ACCCTAGGCGCAATGTGGTA 61.269 55.000 10.83 0.00 0.00 3.25
3943 4337 2.272146 CCCTAGGCGCAATGTGGT 59.728 61.111 10.83 0.00 0.00 4.16
3944 4338 2.114670 CACCCTAGGCGCAATGTGG 61.115 63.158 10.83 5.10 0.00 4.17
3955 4349 0.322546 GCAAACCAGGTCCACCCTAG 60.323 60.000 0.00 0.00 43.86 3.02
3958 4352 1.152546 AAGCAAACCAGGTCCACCC 60.153 57.895 0.00 0.00 36.42 4.61
3964 4358 0.469892 CCCTTCCAAGCAAACCAGGT 60.470 55.000 0.00 0.00 0.00 4.00
4036 4439 1.271379 ACTGTAACGATGACTTCCGCA 59.729 47.619 0.00 0.00 0.00 5.69
4057 4460 1.684734 GGCAGTCTTCCCGTCCCTA 60.685 63.158 0.00 0.00 0.00 3.53
4100 4504 1.097232 CTCGGCTTGCATCCATGAAA 58.903 50.000 0.00 0.00 0.00 2.69
4160 6032 1.523758 ACTGATTCAGCCGTTGTTCC 58.476 50.000 13.64 0.00 34.37 3.62
4189 6061 0.387239 GACGAAAGGCCATGTTGCAC 60.387 55.000 5.01 0.00 0.00 4.57
4208 6080 4.627035 TGAAGACTTCTTGTATGTGCATCG 59.373 41.667 16.02 0.00 36.11 3.84
4225 6097 4.574599 AAGTGCACCAAAGATTGAAGAC 57.425 40.909 14.63 0.00 0.00 3.01
4227 6099 5.830912 TGTAAAGTGCACCAAAGATTGAAG 58.169 37.500 14.63 0.00 0.00 3.02
4247 6119 5.483937 TCTCCAGTCAAGCTTATTTCCTGTA 59.516 40.000 0.00 0.00 0.00 2.74
4267 6139 7.171678 CCACCTTATCTCATTTTTCGTATCTCC 59.828 40.741 0.00 0.00 0.00 3.71
4268 6140 7.926555 TCCACCTTATCTCATTTTTCGTATCTC 59.073 37.037 0.00 0.00 0.00 2.75
4274 6146 8.243426 TGAATTTCCACCTTATCTCATTTTTCG 58.757 33.333 0.00 0.00 0.00 3.46
4293 6165 4.761739 TCCCAGTCATCAACAGTGAATTTC 59.238 41.667 0.00 0.00 37.30 2.17
4313 6185 1.595382 CGCGATGAACAGGGATCCC 60.595 63.158 24.59 24.59 0.00 3.85
4322 6194 1.717194 TTTGGACCTACGCGATGAAC 58.283 50.000 15.93 0.44 0.00 3.18
4338 6210 1.516821 CAACGGGGATGCGCATTTG 60.517 57.895 26.12 19.77 0.00 2.32
4340 6212 3.825611 GCAACGGGGATGCGCATT 61.826 61.111 26.12 8.31 33.57 3.56
4371 6256 1.272212 CCCGTTTCCCAAATTCACCTG 59.728 52.381 0.00 0.00 0.00 4.00
4398 6283 1.269361 CCCGTTTTCCAAAACCGGAAG 60.269 52.381 9.46 0.00 45.65 3.46
4399 6284 0.745468 CCCGTTTTCCAAAACCGGAA 59.255 50.000 9.46 3.67 44.64 4.30
4400 6285 0.395448 ACCCGTTTTCCAAAACCGGA 60.395 50.000 21.77 0.00 44.64 5.14
4401 6286 0.460722 AACCCGTTTTCCAAAACCGG 59.539 50.000 16.27 16.27 46.12 5.28
4402 6287 2.296831 AAACCCGTTTTCCAAAACCG 57.703 45.000 8.92 3.49 44.05 4.44
4403 6288 4.332268 GGTAAAAACCCGTTTTCCAAAACC 59.668 41.667 6.05 6.07 44.05 3.27
4404 6289 5.177326 AGGTAAAAACCCGTTTTCCAAAAC 58.823 37.500 6.05 5.04 41.45 2.43
4405 6290 5.417754 AGGTAAAAACCCGTTTTCCAAAA 57.582 34.783 6.05 0.00 41.45 2.44
4406 6291 4.141981 GGAGGTAAAAACCCGTTTTCCAAA 60.142 41.667 6.05 0.00 41.45 3.28
4407 6292 3.384146 GGAGGTAAAAACCCGTTTTCCAA 59.616 43.478 6.05 0.00 41.45 3.53
4408 6293 2.957680 GGAGGTAAAAACCCGTTTTCCA 59.042 45.455 6.05 0.00 41.45 3.53
4409 6294 3.005050 CAGGAGGTAAAAACCCGTTTTCC 59.995 47.826 6.05 4.71 41.45 3.13
4410 6295 3.633525 ACAGGAGGTAAAAACCCGTTTTC 59.366 43.478 6.05 0.00 41.45 2.29
4411 6296 3.634504 ACAGGAGGTAAAAACCCGTTTT 58.365 40.909 0.00 0.00 43.88 2.43
4412 6297 3.301794 ACAGGAGGTAAAAACCCGTTT 57.698 42.857 0.00 0.00 0.00 3.60
4413 6298 3.301794 AACAGGAGGTAAAAACCCGTT 57.698 42.857 0.00 0.00 0.00 4.44
4414 6299 3.301794 AAACAGGAGGTAAAAACCCGT 57.698 42.857 0.00 0.00 0.00 5.28
4415 6300 5.970317 ATAAAACAGGAGGTAAAAACCCG 57.030 39.130 0.00 0.00 0.00 5.28
4524 6409 9.337091 CGAACTAAAAACCGTTTCATGATTTAT 57.663 29.630 0.00 0.00 0.00 1.40
4525 6410 8.344098 ACGAACTAAAAACCGTTTCATGATTTA 58.656 29.630 0.00 0.00 30.41 1.40
4526 6411 7.166804 CACGAACTAAAAACCGTTTCATGATTT 59.833 33.333 0.00 0.00 32.50 2.17
4527 6412 6.635239 CACGAACTAAAAACCGTTTCATGATT 59.365 34.615 0.00 0.00 32.50 2.57
4528 6413 6.140110 CACGAACTAAAAACCGTTTCATGAT 58.860 36.000 0.00 0.00 32.50 2.45
4529 6414 5.064962 ACACGAACTAAAAACCGTTTCATGA 59.935 36.000 0.00 0.00 32.50 3.07
4530 6415 5.267776 ACACGAACTAAAAACCGTTTCATG 58.732 37.500 0.00 0.00 32.50 3.07
4531 6416 5.488645 ACACGAACTAAAAACCGTTTCAT 57.511 34.783 0.00 0.00 32.50 2.57
4532 6417 4.943142 ACACGAACTAAAAACCGTTTCA 57.057 36.364 0.00 0.00 32.50 2.69
4533 6418 6.615809 AAAACACGAACTAAAAACCGTTTC 57.384 33.333 0.00 0.00 32.50 2.78
4534 6419 8.686397 AATAAAACACGAACTAAAAACCGTTT 57.314 26.923 0.00 0.00 32.50 3.60
4535 6420 8.686397 AAATAAAACACGAACTAAAAACCGTT 57.314 26.923 0.00 0.00 32.50 4.44
4536 6421 8.686397 AAAATAAAACACGAACTAAAAACCGT 57.314 26.923 0.00 0.00 35.46 4.83
4544 6429 9.532697 GCGATCTTTAAAATAAAACACGAACTA 57.467 29.630 0.00 0.00 0.00 2.24
4545 6430 8.071368 TGCGATCTTTAAAATAAAACACGAACT 58.929 29.630 0.00 0.00 0.00 3.01
4546 6431 8.206516 TGCGATCTTTAAAATAAAACACGAAC 57.793 30.769 0.00 0.00 0.00 3.95
4547 6432 8.683774 GTTGCGATCTTTAAAATAAAACACGAA 58.316 29.630 0.00 0.00 0.00 3.85
4548 6433 7.856398 TGTTGCGATCTTTAAAATAAAACACGA 59.144 29.630 0.00 0.00 0.00 4.35
4549 6434 7.987486 TGTTGCGATCTTTAAAATAAAACACG 58.013 30.769 0.00 0.00 0.00 4.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.