Multiple sequence alignment - TraesCS3A01G107600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G107600 chr3A 100.000 4615 0 0 1 4615 72487380 72491994 0.000000e+00 8523.0
1 TraesCS3A01G107600 chr3A 100.000 476 0 0 4847 5322 72492226 72492701 0.000000e+00 880.0
2 TraesCS3A01G107600 chr3A 82.413 489 75 9 65 547 50000998 50001481 2.960000e-112 416.0
3 TraesCS3A01G107600 chr3A 95.789 190 7 1 5133 5322 72672973 72672785 6.700000e-79 305.0
4 TraesCS3A01G107600 chr3D 93.487 4591 172 48 68 4615 63405217 63409723 0.000000e+00 6704.0
5 TraesCS3A01G107600 chr3D 95.192 208 8 2 4847 5053 63409780 63409986 1.430000e-85 327.0
6 TraesCS3A01G107600 chr3D 86.235 247 23 7 3302 3547 66270206 66270442 1.900000e-64 257.0
7 TraesCS3A01G107600 chr3D 85.425 247 26 6 3302 3547 66166433 66166670 1.140000e-61 248.0
8 TraesCS3A01G107600 chr3D 85.020 247 28 7 3302 3547 66268377 66268615 5.330000e-60 243.0
9 TraesCS3A01G107600 chr3D 85.185 243 27 7 3306 3547 66234077 66234311 1.920000e-59 241.0
10 TraesCS3A01G107600 chr3D 84.211 247 30 7 3302 3547 66204664 66204902 1.150000e-56 231.0
11 TraesCS3A01G107600 chr3D 83.806 247 31 7 3302 3547 66164396 66164634 5.360000e-55 226.0
12 TraesCS3A01G107600 chr3D 81.893 243 27 8 3306 3547 66150067 66150293 7.040000e-44 189.0
13 TraesCS3A01G107600 chr3B 92.958 4587 212 49 64 4607 103026639 103031157 0.000000e+00 6578.0
14 TraesCS3A01G107600 chr3B 88.571 280 21 5 4847 5121 103031604 103031877 3.970000e-86 329.0
15 TraesCS3A01G107600 chr3B 87.143 70 7 2 4940 5007 407467471 407467402 1.590000e-10 78.7
16 TraesCS3A01G107600 chr5D 84.836 488 64 9 64 547 391194776 391195257 2.880000e-132 483.0
17 TraesCS3A01G107600 chr5D 82.195 483 75 9 65 546 4712892 4713364 6.420000e-109 405.0
18 TraesCS3A01G107600 chr5D 81.930 487 77 9 65 549 4787188 4787665 8.300000e-108 401.0
19 TraesCS3A01G107600 chr2D 83.265 490 71 10 64 548 645835283 645834800 1.760000e-119 440.0
20 TraesCS3A01G107600 chr1A 82.892 491 70 11 67 548 20083026 20082541 3.810000e-116 429.0
21 TraesCS3A01G107600 chr7A 82.822 489 69 10 64 547 664113928 664113450 1.770000e-114 424.0
22 TraesCS3A01G107600 chr1D 81.875 480 82 5 64 540 391641173 391641650 2.990000e-107 399.0
23 TraesCS3A01G107600 chrUn 81.670 491 70 14 66 548 82644170 82643692 1.800000e-104 390.0
24 TraesCS3A01G107600 chr2A 89.944 179 15 3 2341 2518 755067161 755066985 1.490000e-55 228.0
25 TraesCS3A01G107600 chr6A 91.429 105 7 2 2338 2441 8971047 8971150 5.560000e-30 143.0
26 TraesCS3A01G107600 chr6D 96.000 75 1 2 4922 4994 68076128 68076202 2.600000e-23 121.0
27 TraesCS3A01G107600 chr4D 77.376 221 21 21 4921 5121 82743051 82742840 2.620000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G107600 chr3A 72487380 72492701 5321 False 4701.5 8523 100.0000 1 5322 2 chr3A.!!$F2 5321
1 TraesCS3A01G107600 chr3D 63405217 63409986 4769 False 3515.5 6704 94.3395 68 5053 2 chr3D.!!$F4 4985
2 TraesCS3A01G107600 chr3D 66268377 66270442 2065 False 250.0 257 85.6275 3302 3547 2 chr3D.!!$F6 245
3 TraesCS3A01G107600 chr3D 66164396 66166670 2274 False 237.0 248 84.6155 3302 3547 2 chr3D.!!$F5 245
4 TraesCS3A01G107600 chr3B 103026639 103031877 5238 False 3453.5 6578 90.7645 64 5121 2 chr3B.!!$F1 5057

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
38 39 0.105593 CATGGTGGGTGAGATCGGAG 59.894 60.0 0.0 0.0 0.00 4.63 F
635 653 0.179073 CCCATCGCCTACTGACAAGG 60.179 60.0 0.0 0.0 37.17 3.61 F
1842 1904 0.179062 AGAATGCGAGGTGATCTGCC 60.179 55.0 0.0 0.0 0.00 4.85 F
2999 3063 0.324614 TGTCCGCACAGGTGATTGAT 59.675 50.0 3.1 0.0 41.99 2.57 F
4011 6119 0.108138 GCAGACACGCTTACATCCCT 60.108 55.0 0.0 0.0 0.00 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1730 1781 0.030195 TACTGCCTGGGATGGATGGA 60.030 55.000 0.00 0.0 0.00 3.41 R
2260 2324 0.107897 AATGCTTATCGGTGTCGCCA 60.108 50.000 2.76 0.0 36.97 5.69 R
3453 5560 1.374758 CCACTGTCCTTGAGCCGTC 60.375 63.158 0.00 0.0 0.00 4.79 R
4306 6415 1.139308 CTCTCACTCTGCTCCAGCG 59.861 63.158 0.00 0.0 45.83 5.18 R
5183 7505 0.037326 TCTGCCCAGCTAGTTTGTCG 60.037 55.000 0.00 0.0 0.00 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.191128 AGGCAGTTGTGGAGAATGTC 57.809 50.000 0.00 0.00 0.00 3.06
20 21 1.421268 AGGCAGTTGTGGAGAATGTCA 59.579 47.619 0.00 0.00 0.00 3.58
21 22 2.040813 AGGCAGTTGTGGAGAATGTCAT 59.959 45.455 0.00 0.00 0.00 3.06
22 23 2.163010 GGCAGTTGTGGAGAATGTCATG 59.837 50.000 0.00 0.00 0.00 3.07
23 24 2.163010 GCAGTTGTGGAGAATGTCATGG 59.837 50.000 0.00 0.00 0.00 3.66
24 25 3.415212 CAGTTGTGGAGAATGTCATGGT 58.585 45.455 0.00 0.00 0.00 3.55
25 26 3.189910 CAGTTGTGGAGAATGTCATGGTG 59.810 47.826 0.00 0.00 0.00 4.17
26 27 2.489329 GTTGTGGAGAATGTCATGGTGG 59.511 50.000 0.00 0.00 0.00 4.61
27 28 1.004628 TGTGGAGAATGTCATGGTGGG 59.995 52.381 0.00 0.00 0.00 4.61
28 29 1.004745 GTGGAGAATGTCATGGTGGGT 59.995 52.381 0.00 0.00 0.00 4.51
29 30 1.004628 TGGAGAATGTCATGGTGGGTG 59.995 52.381 0.00 0.00 0.00 4.61
30 31 1.281867 GGAGAATGTCATGGTGGGTGA 59.718 52.381 0.00 0.00 0.00 4.02
31 32 2.636830 GAGAATGTCATGGTGGGTGAG 58.363 52.381 0.00 0.00 0.00 3.51
32 33 2.237143 GAGAATGTCATGGTGGGTGAGA 59.763 50.000 0.00 0.00 0.00 3.27
33 34 2.848694 AGAATGTCATGGTGGGTGAGAT 59.151 45.455 0.00 0.00 31.67 2.75
34 35 3.118112 AGAATGTCATGGTGGGTGAGATC 60.118 47.826 0.00 0.00 29.35 2.75
35 36 0.536724 TGTCATGGTGGGTGAGATCG 59.463 55.000 0.00 0.00 0.00 3.69
36 37 0.179073 GTCATGGTGGGTGAGATCGG 60.179 60.000 0.00 0.00 0.00 4.18
37 38 0.325203 TCATGGTGGGTGAGATCGGA 60.325 55.000 0.00 0.00 0.00 4.55
38 39 0.105593 CATGGTGGGTGAGATCGGAG 59.894 60.000 0.00 0.00 0.00 4.63
39 40 1.050988 ATGGTGGGTGAGATCGGAGG 61.051 60.000 0.00 0.00 0.00 4.30
40 41 1.381327 GGTGGGTGAGATCGGAGGA 60.381 63.158 0.00 0.00 0.00 3.71
41 42 0.760945 GGTGGGTGAGATCGGAGGAT 60.761 60.000 0.00 0.00 34.96 3.24
52 53 4.497473 GATCGGAGGATCAGTTAGACAG 57.503 50.000 0.00 0.00 46.81 3.51
53 54 2.656002 TCGGAGGATCAGTTAGACAGG 58.344 52.381 0.00 0.00 36.25 4.00
54 55 1.067821 CGGAGGATCAGTTAGACAGGC 59.932 57.143 0.00 0.00 36.25 4.85
55 56 2.111384 GGAGGATCAGTTAGACAGGCA 58.889 52.381 0.00 0.00 36.25 4.75
56 57 2.102252 GGAGGATCAGTTAGACAGGCAG 59.898 54.545 0.00 0.00 36.25 4.85
57 58 3.027412 GAGGATCAGTTAGACAGGCAGA 58.973 50.000 0.00 0.00 33.17 4.26
58 59 3.030291 AGGATCAGTTAGACAGGCAGAG 58.970 50.000 0.00 0.00 0.00 3.35
59 60 2.482839 GGATCAGTTAGACAGGCAGAGC 60.483 54.545 0.00 0.00 0.00 4.09
71 72 0.957888 GGCAGAGCCTTCAGGTGTTC 60.958 60.000 0.00 0.00 46.69 3.18
73 74 0.318441 CAGAGCCTTCAGGTGTTCGA 59.682 55.000 0.00 0.00 37.57 3.71
88 89 2.097629 TGTTCGATAACTCTCAGGAGCG 59.902 50.000 0.00 0.00 42.98 5.03
107 108 2.515398 CAGTGTCAAGTGGGGGCA 59.485 61.111 0.00 0.00 0.00 5.36
111 112 0.827507 GTGTCAAGTGGGGGCAACAT 60.828 55.000 0.00 0.00 39.74 2.71
113 114 1.303236 TCAAGTGGGGGCAACATCG 60.303 57.895 0.00 0.00 39.74 3.84
114 115 1.603455 CAAGTGGGGGCAACATCGT 60.603 57.895 0.00 0.00 39.74 3.73
147 148 2.690653 TTTTGGTGGTGCTCCTCGGG 62.691 60.000 6.34 0.00 34.23 5.14
151 152 1.982938 GTGGTGCTCCTCGGGTACT 60.983 63.158 6.34 0.00 34.23 2.73
164 165 1.402984 CGGGTACTGAGCTGTGACTTC 60.403 57.143 0.00 0.00 36.31 3.01
166 167 1.402984 GGTACTGAGCTGTGACTTCCG 60.403 57.143 0.00 0.00 0.00 4.30
176 177 1.064611 TGTGACTTCCGGGGTGAAAAA 60.065 47.619 0.00 0.00 0.00 1.94
207 208 0.604578 CCTTCATTGGTTGTGCCTGG 59.395 55.000 0.00 0.00 38.35 4.45
214 215 1.004679 GGTTGTGCCTGGCAATTGG 60.005 57.895 25.23 0.00 41.47 3.16
242 243 5.508657 GCTGAAGGAATTGTTTTGAGAGCTT 60.509 40.000 0.00 0.00 0.00 3.74
244 245 5.593909 TGAAGGAATTGTTTTGAGAGCTTGA 59.406 36.000 0.00 0.00 0.00 3.02
268 269 4.354087 ACTTCTCCAGGGTGAAAACCTAAT 59.646 41.667 4.57 0.00 36.32 1.73
298 299 1.659794 GGCAACGATGGTGCTTGTT 59.340 52.632 6.79 0.00 0.00 2.83
306 307 2.805671 CGATGGTGCTTGTTCACTGTTA 59.194 45.455 0.00 0.00 37.16 2.41
314 316 5.064707 GTGCTTGTTCACTGTTACTTCTTGA 59.935 40.000 0.00 0.00 34.29 3.02
318 320 5.984725 TGTTCACTGTTACTTCTTGAAGGA 58.015 37.500 13.97 3.33 0.00 3.36
337 340 3.885901 AGGAGTTGCTTTTGAAGACCTTC 59.114 43.478 2.94 2.94 39.91 3.46
341 344 6.879458 GGAGTTGCTTTTGAAGACCTTCTATA 59.121 38.462 10.67 0.00 40.14 1.31
395 405 1.588597 CGGCTGCTGAGAGAAGTCA 59.411 57.895 1.17 0.00 0.00 3.41
402 412 1.467374 GCTGAGAGAAGTCAGTCGCTC 60.467 57.143 3.00 0.00 45.07 5.03
492 502 1.270571 TGCGACATCTTGTAGGTGCAA 60.271 47.619 0.00 0.00 0.00 4.08
496 506 3.123621 CGACATCTTGTAGGTGCAAAGAC 59.876 47.826 0.00 0.00 0.00 3.01
497 507 3.412386 ACATCTTGTAGGTGCAAAGACC 58.588 45.455 0.00 0.00 36.09 3.85
500 510 0.759959 TTGTAGGTGCAAAGACCGGA 59.240 50.000 9.46 0.00 41.35 5.14
503 513 0.392461 TAGGTGCAAAGACCGGATGC 60.392 55.000 9.46 13.75 41.35 3.91
505 515 4.490696 TGCAAAGACCGGATGCAA 57.509 50.000 20.58 9.19 46.23 4.08
506 516 2.959967 TGCAAAGACCGGATGCAAT 58.040 47.368 20.58 0.00 46.23 3.56
507 517 1.255882 TGCAAAGACCGGATGCAATT 58.744 45.000 20.58 1.37 46.23 2.32
508 518 1.067706 TGCAAAGACCGGATGCAATTG 60.068 47.619 20.58 0.00 46.23 2.32
509 519 1.202114 GCAAAGACCGGATGCAATTGA 59.798 47.619 9.46 0.00 39.81 2.57
510 520 2.159198 GCAAAGACCGGATGCAATTGAT 60.159 45.455 9.46 0.00 39.81 2.57
511 521 3.066621 GCAAAGACCGGATGCAATTGATA 59.933 43.478 9.46 0.00 39.81 2.15
512 522 4.261741 GCAAAGACCGGATGCAATTGATAT 60.262 41.667 9.46 2.23 39.81 1.63
513 523 5.455392 CAAAGACCGGATGCAATTGATATC 58.545 41.667 9.46 11.57 0.00 1.63
514 524 4.630644 AGACCGGATGCAATTGATATCT 57.369 40.909 9.46 0.00 0.00 1.98
515 525 4.321718 AGACCGGATGCAATTGATATCTG 58.678 43.478 9.46 15.50 0.00 2.90
516 526 2.816087 ACCGGATGCAATTGATATCTGC 59.184 45.455 9.46 6.39 36.60 4.26
517 527 2.159612 CCGGATGCAATTGATATCTGCG 60.160 50.000 10.34 11.00 38.97 5.18
518 528 2.726989 CGGATGCAATTGATATCTGCGC 60.727 50.000 10.34 0.00 38.97 6.09
519 529 2.502876 GATGCAATTGATATCTGCGCG 58.497 47.619 10.34 0.00 38.97 6.86
520 530 0.587768 TGCAATTGATATCTGCGCGG 59.412 50.000 10.86 10.86 38.97 6.46
521 531 0.727122 GCAATTGATATCTGCGCGGC 60.727 55.000 12.58 0.00 0.00 6.53
533 543 5.818136 ATCTGCGCGGCATTAATATATTT 57.182 34.783 12.58 0.00 38.13 1.40
536 546 3.127895 TGCGCGGCATTAATATATTTCCC 59.872 43.478 8.83 0.00 31.71 3.97
565 576 2.927553 ATTCAAGCAAAGTGGCGATC 57.072 45.000 0.00 0.00 39.27 3.69
570 581 2.982470 CAAGCAAAGTGGCGATCTTTTC 59.018 45.455 0.00 0.00 39.27 2.29
600 618 5.453567 ACAAATACCAGAAAAGGAGCAAC 57.546 39.130 0.00 0.00 0.00 4.17
602 620 5.598417 ACAAATACCAGAAAAGGAGCAACTT 59.402 36.000 0.00 0.00 0.00 2.66
624 642 1.202533 CCCGTGATATATCCCATCGCC 60.203 57.143 10.25 0.00 30.70 5.54
635 653 0.179073 CCCATCGCCTACTGACAAGG 60.179 60.000 0.00 0.00 37.17 3.61
696 714 0.537371 ATGGCAGGCCCGTAAATAGC 60.537 55.000 8.02 0.00 35.87 2.97
845 864 6.968904 GGACGACGCTAATCCGAATATATAAA 59.031 38.462 0.00 0.00 0.00 1.40
856 875 0.913924 ATATATAAACCCCCGCCCCG 59.086 55.000 0.00 0.00 0.00 5.73
918 938 1.576356 CAGAATCACCGGCTAAGCTC 58.424 55.000 0.00 0.00 0.00 4.09
945 965 2.076863 CCTCGTGATCTCAAAACCACC 58.923 52.381 0.00 0.00 0.00 4.61
948 968 3.815401 CTCGTGATCTCAAAACCACCTTT 59.185 43.478 0.00 0.00 0.00 3.11
949 969 4.204012 TCGTGATCTCAAAACCACCTTTT 58.796 39.130 0.00 0.00 31.77 2.27
950 970 4.642885 TCGTGATCTCAAAACCACCTTTTT 59.357 37.500 0.00 0.00 28.85 1.94
1179 1199 4.183686 GACGCCGGCTACGTGCTA 62.184 66.667 26.68 0.00 45.24 3.49
1256 1276 2.505777 CGTGCTCCTCTCGCTGTG 60.506 66.667 0.00 0.00 0.00 3.66
1272 1292 3.066190 TGTCCCGTTCCGATCGCT 61.066 61.111 10.32 0.00 0.00 4.93
1283 1303 1.699656 CCGATCGCTTTGGTGCTCTG 61.700 60.000 10.32 0.00 0.00 3.35
1337 1371 4.447342 ATGCTTTCCCGGCCCCTG 62.447 66.667 0.00 0.00 0.00 4.45
1344 1378 2.523168 CCCGGCCCCTGTTTTTGT 60.523 61.111 0.00 0.00 0.00 2.83
1360 1394 1.271856 TTGTCGCCCTTCTGTGGATA 58.728 50.000 0.00 0.00 0.00 2.59
1540 1591 9.388506 CAGATTACAGTTACAGAATCCTTGAAT 57.611 33.333 0.00 0.00 0.00 2.57
1557 1608 5.392272 CCTTGAATTGAATCGATTGCTCACA 60.392 40.000 16.96 3.71 0.00 3.58
1562 1613 7.280652 TGAATTGAATCGATTGCTCACATCTTA 59.719 33.333 16.96 0.00 0.00 2.10
1597 1648 0.968901 TGCAGACGTACCCGAATCCT 60.969 55.000 0.00 0.00 37.88 3.24
1665 1716 1.410153 CTTTCTTTGCCCTGCACAGTT 59.590 47.619 2.54 0.00 38.71 3.16
1718 1769 1.349026 CTGACCTTTCTTCCTGCTCCA 59.651 52.381 0.00 0.00 0.00 3.86
1807 1858 9.918630 AAGGTGAGAAATTTTCTGTGAATTATG 57.081 29.630 16.17 0.00 40.87 1.90
1808 1859 9.082313 AGGTGAGAAATTTTCTGTGAATTATGT 57.918 29.630 16.17 0.00 40.87 2.29
1842 1904 0.179062 AGAATGCGAGGTGATCTGCC 60.179 55.000 0.00 0.00 0.00 4.85
1950 2013 1.049289 GGGTCTACTTCCAGCCCGAT 61.049 60.000 0.00 0.00 0.00 4.18
2034 2097 1.740296 GCTCGTGTGCGGGTTGTAT 60.740 57.895 0.00 0.00 41.45 2.29
2131 2195 8.252417 TGCATTTGTAAATTATCACAATGCTCT 58.748 29.630 22.79 0.00 38.51 4.09
2190 2254 4.617645 CGATGCTAACGAGGCTAGTTAATC 59.382 45.833 18.70 17.26 34.18 1.75
2236 2300 7.121315 GCTTAGGAAGGTGTGATTTAGAACAAT 59.879 37.037 0.00 0.00 0.00 2.71
2245 2309 3.625764 TGATTTAGAACAATACCGCCTGC 59.374 43.478 0.00 0.00 0.00 4.85
2260 2324 3.436704 CCGCCTGCGAATACAATATTGAT 59.563 43.478 22.16 8.28 42.83 2.57
2263 2327 4.726416 CCTGCGAATACAATATTGATGGC 58.274 43.478 22.16 17.82 0.00 4.40
2282 2346 2.159435 GGCGACACCGATAAGCATTTTT 60.159 45.455 0.00 0.00 38.22 1.94
2299 2363 7.989826 AGCATTTTTAGCTGTCACCTAATAAG 58.010 34.615 0.00 0.00 41.61 1.73
2300 2364 7.611855 AGCATTTTTAGCTGTCACCTAATAAGT 59.388 33.333 0.00 0.00 41.61 2.24
2301 2365 8.889717 GCATTTTTAGCTGTCACCTAATAAGTA 58.110 33.333 0.00 0.00 0.00 2.24
2328 2392 6.156748 ACATGATGCTGCAATGTTGATAAT 57.843 33.333 12.85 0.00 0.00 1.28
2352 2416 4.576463 CCTGAAACTGCTTAGAAGTGTGTT 59.424 41.667 0.00 0.00 0.00 3.32
2414 2478 9.601034 TGGTGACACTAATAAGCATTGTTTGCC 62.601 40.741 5.39 0.00 44.67 4.52
2444 2508 4.002906 ACGACATGGTGTTGTCATTAGT 57.997 40.909 0.00 0.00 40.86 2.24
2548 2612 2.355115 CAGGGTGGGTACAAGGGC 59.645 66.667 0.00 0.00 0.00 5.19
2754 2818 7.413219 CGCTTCCGTAATTTATGAGGTAACAAA 60.413 37.037 0.00 0.00 41.41 2.83
2816 2880 2.300433 TGTCTCACATGCAACTGCTTT 58.700 42.857 2.95 0.00 42.66 3.51
2817 2881 2.689471 TGTCTCACATGCAACTGCTTTT 59.311 40.909 2.95 0.00 42.66 2.27
2999 3063 0.324614 TGTCCGCACAGGTGATTGAT 59.675 50.000 3.10 0.00 41.99 2.57
3038 3102 2.241479 CTGCTGTGGAGGAGGCTCAG 62.241 65.000 17.69 5.54 34.06 3.35
3162 3226 7.066404 TGTTACAAACTTGCAGTCACATCTTAA 59.934 33.333 0.00 0.00 0.00 1.85
3173 3237 8.100791 TGCAGTCACATCTTAAAAGTAATACCT 58.899 33.333 0.00 0.00 0.00 3.08
3297 3361 3.921630 CGTGACGTGGTATGTTGTTATCA 59.078 43.478 0.00 0.00 0.00 2.15
3298 3362 4.565166 CGTGACGTGGTATGTTGTTATCAT 59.435 41.667 0.00 0.00 0.00 2.45
3299 3363 5.062934 CGTGACGTGGTATGTTGTTATCATT 59.937 40.000 0.00 0.00 0.00 2.57
3300 3364 6.475207 GTGACGTGGTATGTTGTTATCATTC 58.525 40.000 0.00 0.00 0.00 2.67
3303 3367 7.335673 TGACGTGGTATGTTGTTATCATTCATT 59.664 33.333 0.00 0.00 0.00 2.57
3453 5560 1.131504 CCTCCTTGAGTTCGTCGAGAG 59.868 57.143 0.00 0.00 38.89 3.20
3696 5803 9.553064 CTCTTTGGCTCATTCAAGTATATTAGT 57.447 33.333 0.00 0.00 0.00 2.24
3756 5863 5.966742 AGTAGATTGAAAGTTTGAAGCCC 57.033 39.130 0.00 0.00 0.00 5.19
3834 5942 5.647225 GCAGGATCATTTCAAGAAGAAGACT 59.353 40.000 0.00 0.00 37.57 3.24
4011 6119 0.108138 GCAGACACGCTTACATCCCT 60.108 55.000 0.00 0.00 0.00 4.20
4058 6166 3.450457 AGTGATCAACCCTGAGATCTGTC 59.550 47.826 0.00 0.00 40.92 3.51
4267 6376 2.049063 AACACGCAGCTCCTCGAC 60.049 61.111 6.56 0.00 0.00 4.20
4297 6406 1.845809 CGAAGTGCTCACCCAACTGC 61.846 60.000 0.00 0.00 0.00 4.40
4300 6409 0.178981 AGTGCTCACCCAACTGCAAT 60.179 50.000 0.00 0.00 37.17 3.56
4303 6412 0.895100 GCTCACCCAACTGCAATGGA 60.895 55.000 17.62 0.00 40.56 3.41
4306 6415 0.819582 CACCCAACTGCAATGGATCC 59.180 55.000 17.62 4.20 40.56 3.36
4988 7310 0.322098 CATTGGTGGAAGGCGTGGTA 60.322 55.000 0.00 0.00 0.00 3.25
5036 7358 6.094739 CAAATGCATTTTGAAGCTCTGATG 57.905 37.500 21.95 3.33 46.36 3.07
5062 7384 2.861462 TTTCTTGCCACGGTTTTCAG 57.139 45.000 0.00 0.00 0.00 3.02
5071 7393 2.030007 CCACGGTTTTCAGCAATGTGAT 60.030 45.455 0.00 0.00 0.00 3.06
5075 7397 3.361644 CGGTTTTCAGCAATGTGATTTCG 59.638 43.478 0.00 0.00 0.00 3.46
5077 7399 4.382754 GGTTTTCAGCAATGTGATTTCGTC 59.617 41.667 0.00 0.00 0.00 4.20
5082 7404 2.488937 AGCAATGTGATTTCGTCATGCA 59.511 40.909 0.00 0.00 40.94 3.96
5083 7405 3.057386 AGCAATGTGATTTCGTCATGCAA 60.057 39.130 0.00 0.00 40.94 4.08
5084 7406 3.674281 GCAATGTGATTTCGTCATGCAAA 59.326 39.130 0.00 0.00 39.21 3.68
5085 7407 4.150274 GCAATGTGATTTCGTCATGCAAAA 59.850 37.500 0.00 0.00 39.21 2.44
5086 7408 5.163933 GCAATGTGATTTCGTCATGCAAAAT 60.164 36.000 0.00 0.00 39.21 1.82
5122 7444 9.405587 TGCATAACAAACATTTCTTAAAGTAGC 57.594 29.630 0.00 0.00 0.00 3.58
5123 7445 9.626045 GCATAACAAACATTTCTTAAAGTAGCT 57.374 29.630 0.00 0.00 0.00 3.32
5127 7449 9.516314 AACAAACATTTCTTAAAGTAGCTTGTC 57.484 29.630 0.00 0.00 0.00 3.18
5128 7450 8.682710 ACAAACATTTCTTAAAGTAGCTTGTCA 58.317 29.630 0.00 0.00 0.00 3.58
5129 7451 9.173939 CAAACATTTCTTAAAGTAGCTTGTCAG 57.826 33.333 0.00 0.00 0.00 3.51
5130 7452 8.677148 AACATTTCTTAAAGTAGCTTGTCAGA 57.323 30.769 0.00 0.00 0.00 3.27
5131 7453 8.854614 ACATTTCTTAAAGTAGCTTGTCAGAT 57.145 30.769 0.00 0.00 0.00 2.90
5132 7454 9.944376 ACATTTCTTAAAGTAGCTTGTCAGATA 57.056 29.630 0.00 0.00 0.00 1.98
5135 7457 8.462143 TTCTTAAAGTAGCTTGTCAGATAACG 57.538 34.615 0.00 0.00 0.00 3.18
5136 7458 6.530534 TCTTAAAGTAGCTTGTCAGATAACGC 59.469 38.462 0.00 0.00 0.00 4.84
5137 7459 3.868757 AGTAGCTTGTCAGATAACGCA 57.131 42.857 0.00 0.00 0.00 5.24
5138 7460 4.392921 AGTAGCTTGTCAGATAACGCAT 57.607 40.909 0.00 0.00 0.00 4.73
5139 7461 5.515797 AGTAGCTTGTCAGATAACGCATA 57.484 39.130 0.00 0.00 0.00 3.14
5140 7462 5.902681 AGTAGCTTGTCAGATAACGCATAA 58.097 37.500 0.00 0.00 0.00 1.90
5141 7463 5.980116 AGTAGCTTGTCAGATAACGCATAAG 59.020 40.000 0.00 0.00 0.00 1.73
5142 7464 5.011090 AGCTTGTCAGATAACGCATAAGA 57.989 39.130 0.00 0.00 0.00 2.10
5143 7465 5.419542 AGCTTGTCAGATAACGCATAAGAA 58.580 37.500 0.00 0.00 0.00 2.52
5144 7466 5.292101 AGCTTGTCAGATAACGCATAAGAAC 59.708 40.000 0.00 0.00 0.00 3.01
5145 7467 5.063438 GCTTGTCAGATAACGCATAAGAACA 59.937 40.000 0.00 0.00 0.00 3.18
5146 7468 6.403333 TTGTCAGATAACGCATAAGAACAC 57.597 37.500 0.00 0.00 0.00 3.32
5147 7469 5.474825 TGTCAGATAACGCATAAGAACACA 58.525 37.500 0.00 0.00 0.00 3.72
5148 7470 6.106003 TGTCAGATAACGCATAAGAACACAT 58.894 36.000 0.00 0.00 0.00 3.21
5149 7471 7.262048 TGTCAGATAACGCATAAGAACACATA 58.738 34.615 0.00 0.00 0.00 2.29
5150 7472 7.762159 TGTCAGATAACGCATAAGAACACATAA 59.238 33.333 0.00 0.00 0.00 1.90
5151 7473 8.056571 GTCAGATAACGCATAAGAACACATAAC 58.943 37.037 0.00 0.00 0.00 1.89
5152 7474 7.762159 TCAGATAACGCATAAGAACACATAACA 59.238 33.333 0.00 0.00 0.00 2.41
5153 7475 8.387354 CAGATAACGCATAAGAACACATAACAA 58.613 33.333 0.00 0.00 0.00 2.83
5154 7476 8.941977 AGATAACGCATAAGAACACATAACAAA 58.058 29.630 0.00 0.00 0.00 2.83
5155 7477 8.889849 ATAACGCATAAGAACACATAACAAAC 57.110 30.769 0.00 0.00 0.00 2.93
5156 7478 6.307031 ACGCATAAGAACACATAACAAACA 57.693 33.333 0.00 0.00 0.00 2.83
5157 7479 6.370593 ACGCATAAGAACACATAACAAACAG 58.629 36.000 0.00 0.00 0.00 3.16
5158 7480 6.017440 ACGCATAAGAACACATAACAAACAGT 60.017 34.615 0.00 0.00 0.00 3.55
5159 7481 6.303022 CGCATAAGAACACATAACAAACAGTG 59.697 38.462 0.00 0.00 37.95 3.66
5160 7482 7.359595 GCATAAGAACACATAACAAACAGTGA 58.640 34.615 0.00 0.00 35.97 3.41
5161 7483 7.860373 GCATAAGAACACATAACAAACAGTGAA 59.140 33.333 0.00 0.00 35.97 3.18
5162 7484 9.729023 CATAAGAACACATAACAAACAGTGAAA 57.271 29.630 0.00 0.00 35.97 2.69
5164 7486 8.687824 AAGAACACATAACAAACAGTGAAAAG 57.312 30.769 0.00 0.00 35.97 2.27
5165 7487 7.257722 AGAACACATAACAAACAGTGAAAAGG 58.742 34.615 0.00 0.00 35.97 3.11
5166 7488 6.524101 ACACATAACAAACAGTGAAAAGGT 57.476 33.333 0.00 0.00 35.97 3.50
5167 7489 6.329496 ACACATAACAAACAGTGAAAAGGTG 58.671 36.000 0.00 0.00 35.97 4.00
5168 7490 5.748152 CACATAACAAACAGTGAAAAGGTGG 59.252 40.000 0.00 0.00 33.99 4.61
5169 7491 2.959507 ACAAACAGTGAAAAGGTGGC 57.040 45.000 0.00 0.00 0.00 5.01
5170 7492 2.175202 ACAAACAGTGAAAAGGTGGCA 58.825 42.857 0.00 0.00 0.00 4.92
5171 7493 2.094234 ACAAACAGTGAAAAGGTGGCAC 60.094 45.455 9.70 9.70 0.00 5.01
5172 7494 1.846007 AACAGTGAAAAGGTGGCACA 58.154 45.000 20.82 0.00 35.08 4.57
5173 7495 1.846007 ACAGTGAAAAGGTGGCACAA 58.154 45.000 20.82 0.00 44.16 3.33
5174 7496 2.175202 ACAGTGAAAAGGTGGCACAAA 58.825 42.857 20.82 0.00 44.16 2.83
5175 7497 2.094234 ACAGTGAAAAGGTGGCACAAAC 60.094 45.455 20.82 7.61 44.16 2.93
5176 7498 1.134175 AGTGAAAAGGTGGCACAAACG 59.866 47.619 20.82 0.00 44.16 3.60
5177 7499 0.457851 TGAAAAGGTGGCACAAACGG 59.542 50.000 20.82 0.00 44.16 4.44
5178 7500 0.741915 GAAAAGGTGGCACAAACGGA 59.258 50.000 20.82 0.00 44.16 4.69
5179 7501 1.135333 GAAAAGGTGGCACAAACGGAA 59.865 47.619 20.82 0.00 44.16 4.30
5180 7502 0.744281 AAAGGTGGCACAAACGGAAG 59.256 50.000 20.82 0.00 44.16 3.46
5181 7503 0.106918 AAGGTGGCACAAACGGAAGA 60.107 50.000 20.82 0.00 44.16 2.87
5182 7504 0.535102 AGGTGGCACAAACGGAAGAG 60.535 55.000 20.82 0.00 44.16 2.85
5183 7505 1.282875 GTGGCACAAACGGAAGAGC 59.717 57.895 13.86 0.00 44.16 4.09
5184 7506 2.250939 TGGCACAAACGGAAGAGCG 61.251 57.895 0.00 0.00 31.92 5.03
5185 7507 1.959226 GGCACAAACGGAAGAGCGA 60.959 57.895 0.00 0.00 0.00 4.93
5186 7508 1.204312 GCACAAACGGAAGAGCGAC 59.796 57.895 0.00 0.00 0.00 5.19
5187 7509 1.495584 GCACAAACGGAAGAGCGACA 61.496 55.000 0.00 0.00 0.00 4.35
5188 7510 0.934496 CACAAACGGAAGAGCGACAA 59.066 50.000 0.00 0.00 0.00 3.18
5189 7511 1.329292 CACAAACGGAAGAGCGACAAA 59.671 47.619 0.00 0.00 0.00 2.83
5190 7512 1.329599 ACAAACGGAAGAGCGACAAAC 59.670 47.619 0.00 0.00 0.00 2.93
5191 7513 1.597663 CAAACGGAAGAGCGACAAACT 59.402 47.619 0.00 0.00 0.00 2.66
5192 7514 2.798283 CAAACGGAAGAGCGACAAACTA 59.202 45.455 0.00 0.00 0.00 2.24
5193 7515 2.349297 ACGGAAGAGCGACAAACTAG 57.651 50.000 0.00 0.00 0.00 2.57
5194 7516 0.992802 CGGAAGAGCGACAAACTAGC 59.007 55.000 0.00 0.00 0.00 3.42
5195 7517 1.402984 CGGAAGAGCGACAAACTAGCT 60.403 52.381 0.00 0.00 44.80 3.32
5196 7518 1.996191 GGAAGAGCGACAAACTAGCTG 59.004 52.381 0.00 0.00 41.84 4.24
5197 7519 1.996191 GAAGAGCGACAAACTAGCTGG 59.004 52.381 0.00 0.00 41.84 4.85
5198 7520 0.247736 AGAGCGACAAACTAGCTGGG 59.752 55.000 0.85 0.00 41.84 4.45
5199 7521 1.362406 GAGCGACAAACTAGCTGGGC 61.362 60.000 0.85 0.00 41.84 5.36
5200 7522 1.671054 GCGACAAACTAGCTGGGCA 60.671 57.895 0.85 0.00 0.00 5.36
5201 7523 1.639298 GCGACAAACTAGCTGGGCAG 61.639 60.000 0.85 0.00 0.00 4.85
5202 7524 0.037326 CGACAAACTAGCTGGGCAGA 60.037 55.000 0.85 0.00 0.00 4.26
5203 7525 1.608025 CGACAAACTAGCTGGGCAGAA 60.608 52.381 0.85 0.00 0.00 3.02
5204 7526 2.716217 GACAAACTAGCTGGGCAGAAT 58.284 47.619 0.85 0.00 0.00 2.40
5205 7527 3.678806 CGACAAACTAGCTGGGCAGAATA 60.679 47.826 0.85 0.00 0.00 1.75
5206 7528 4.261801 GACAAACTAGCTGGGCAGAATAA 58.738 43.478 0.85 0.00 0.00 1.40
5207 7529 4.662278 ACAAACTAGCTGGGCAGAATAAA 58.338 39.130 0.85 0.00 0.00 1.40
5208 7530 5.264395 ACAAACTAGCTGGGCAGAATAAAT 58.736 37.500 0.85 0.00 0.00 1.40
5209 7531 5.358160 ACAAACTAGCTGGGCAGAATAAATC 59.642 40.000 0.85 0.00 0.00 2.17
5210 7532 4.092116 ACTAGCTGGGCAGAATAAATCC 57.908 45.455 0.85 0.00 0.00 3.01
5211 7533 3.459598 ACTAGCTGGGCAGAATAAATCCA 59.540 43.478 0.85 0.00 0.00 3.41
5212 7534 3.386932 AGCTGGGCAGAATAAATCCAA 57.613 42.857 0.00 0.00 0.00 3.53
5213 7535 3.711863 AGCTGGGCAGAATAAATCCAAA 58.288 40.909 0.00 0.00 0.00 3.28
5214 7536 3.448660 AGCTGGGCAGAATAAATCCAAAC 59.551 43.478 0.00 0.00 0.00 2.93
5215 7537 3.195396 GCTGGGCAGAATAAATCCAAACA 59.805 43.478 0.00 0.00 0.00 2.83
5216 7538 4.322650 GCTGGGCAGAATAAATCCAAACAA 60.323 41.667 0.00 0.00 0.00 2.83
5217 7539 5.792741 CTGGGCAGAATAAATCCAAACAAA 58.207 37.500 0.00 0.00 0.00 2.83
5218 7540 5.792741 TGGGCAGAATAAATCCAAACAAAG 58.207 37.500 0.00 0.00 0.00 2.77
5219 7541 5.178061 GGGCAGAATAAATCCAAACAAAGG 58.822 41.667 0.00 0.00 0.00 3.11
5220 7542 5.279960 GGGCAGAATAAATCCAAACAAAGGT 60.280 40.000 0.00 0.00 0.00 3.50
5221 7543 6.230472 GGCAGAATAAATCCAAACAAAGGTT 58.770 36.000 0.00 0.00 39.43 3.50
5223 7545 7.095229 GGCAGAATAAATCCAAACAAAGGTTTC 60.095 37.037 0.00 0.00 45.18 2.78
5224 7546 7.657354 GCAGAATAAATCCAAACAAAGGTTTCT 59.343 33.333 0.00 0.00 45.18 2.52
5225 7547 8.981647 CAGAATAAATCCAAACAAAGGTTTCTG 58.018 33.333 0.00 0.00 45.18 3.02
5226 7548 8.150296 AGAATAAATCCAAACAAAGGTTTCTGG 58.850 33.333 0.00 0.00 45.18 3.86
5227 7549 3.751479 ATCCAAACAAAGGTTTCTGGC 57.249 42.857 0.00 0.00 45.18 4.85
5228 7550 2.461695 TCCAAACAAAGGTTTCTGGCA 58.538 42.857 0.00 0.00 45.18 4.92
5229 7551 3.037549 TCCAAACAAAGGTTTCTGGCAT 58.962 40.909 0.00 0.00 45.18 4.40
5230 7552 4.219115 TCCAAACAAAGGTTTCTGGCATA 58.781 39.130 0.00 0.00 45.18 3.14
5231 7553 4.038642 TCCAAACAAAGGTTTCTGGCATAC 59.961 41.667 0.00 0.00 45.18 2.39
5232 7554 4.202202 CCAAACAAAGGTTTCTGGCATACA 60.202 41.667 0.00 0.00 45.18 2.29
5233 7555 5.511202 CCAAACAAAGGTTTCTGGCATACAT 60.511 40.000 0.00 0.00 45.18 2.29
5234 7556 6.295011 CCAAACAAAGGTTTCTGGCATACATA 60.295 38.462 0.00 0.00 45.18 2.29
5235 7557 6.909550 AACAAAGGTTTCTGGCATACATAA 57.090 33.333 0.00 0.00 31.83 1.90
5236 7558 6.515272 ACAAAGGTTTCTGGCATACATAAG 57.485 37.500 0.00 0.00 0.00 1.73
5237 7559 6.010219 ACAAAGGTTTCTGGCATACATAAGT 58.990 36.000 0.00 0.00 0.00 2.24
5238 7560 7.172342 ACAAAGGTTTCTGGCATACATAAGTA 58.828 34.615 0.00 0.00 34.10 2.24
5239 7561 7.668052 ACAAAGGTTTCTGGCATACATAAGTAA 59.332 33.333 0.00 0.00 33.13 2.24
5240 7562 7.625828 AAGGTTTCTGGCATACATAAGTAAC 57.374 36.000 0.00 0.00 33.13 2.50
5241 7563 6.958767 AGGTTTCTGGCATACATAAGTAACT 58.041 36.000 0.00 0.00 33.13 2.24
5242 7564 7.402862 AGGTTTCTGGCATACATAAGTAACTT 58.597 34.615 0.00 0.00 33.13 2.66
5243 7565 7.336931 AGGTTTCTGGCATACATAAGTAACTTG 59.663 37.037 0.00 0.00 33.13 3.16
5244 7566 7.120726 GGTTTCTGGCATACATAAGTAACTTGT 59.879 37.037 0.00 0.00 33.13 3.16
5245 7567 7.843490 TTCTGGCATACATAAGTAACTTGTC 57.157 36.000 0.00 0.00 33.13 3.18
5246 7568 7.182817 TCTGGCATACATAAGTAACTTGTCT 57.817 36.000 0.00 0.00 33.13 3.41
5247 7569 7.620880 TCTGGCATACATAAGTAACTTGTCTT 58.379 34.615 0.00 0.00 33.13 3.01
5248 7570 7.549134 TCTGGCATACATAAGTAACTTGTCTTG 59.451 37.037 0.00 0.00 33.13 3.02
5249 7571 6.597672 TGGCATACATAAGTAACTTGTCTTGG 59.402 38.462 0.00 0.00 33.13 3.61
5250 7572 6.458342 GGCATACATAAGTAACTTGTCTTGGC 60.458 42.308 0.00 0.00 33.13 4.52
5251 7573 6.093495 GCATACATAAGTAACTTGTCTTGGCA 59.907 38.462 0.00 0.00 33.13 4.92
5252 7574 7.361713 GCATACATAAGTAACTTGTCTTGGCAA 60.362 37.037 0.00 0.00 33.13 4.52
5253 7575 6.952773 ACATAAGTAACTTGTCTTGGCAAA 57.047 33.333 0.00 0.00 0.00 3.68
5254 7576 7.341445 ACATAAGTAACTTGTCTTGGCAAAA 57.659 32.000 0.00 0.00 0.00 2.44
5255 7577 7.200455 ACATAAGTAACTTGTCTTGGCAAAAC 58.800 34.615 0.00 0.00 0.00 2.43
5256 7578 5.914898 AAGTAACTTGTCTTGGCAAAACT 57.085 34.783 5.16 0.00 0.00 2.66
5257 7579 5.914898 AGTAACTTGTCTTGGCAAAACTT 57.085 34.783 5.16 0.00 0.00 2.66
5258 7580 7.399245 AAGTAACTTGTCTTGGCAAAACTTA 57.601 32.000 5.16 0.00 30.79 2.24
5259 7581 7.027778 AGTAACTTGTCTTGGCAAAACTTAG 57.972 36.000 5.16 5.24 0.00 2.18
5260 7582 5.914898 AACTTGTCTTGGCAAAACTTAGT 57.085 34.783 5.16 5.84 0.00 2.24
5261 7583 5.914898 ACTTGTCTTGGCAAAACTTAGTT 57.085 34.783 5.16 0.00 0.00 2.24
5262 7584 6.280855 ACTTGTCTTGGCAAAACTTAGTTT 57.719 33.333 4.30 4.30 37.34 2.66
5263 7585 7.399245 ACTTGTCTTGGCAAAACTTAGTTTA 57.601 32.000 10.97 0.00 34.43 2.01
5264 7586 7.832769 ACTTGTCTTGGCAAAACTTAGTTTAA 58.167 30.769 10.97 1.06 34.43 1.52
5265 7587 8.308207 ACTTGTCTTGGCAAAACTTAGTTTAAA 58.692 29.630 10.97 3.51 34.43 1.52
5266 7588 8.468720 TTGTCTTGGCAAAACTTAGTTTAAAC 57.531 30.769 10.97 10.47 34.43 2.01
5267 7589 7.603651 TGTCTTGGCAAAACTTAGTTTAAACA 58.396 30.769 20.06 7.35 34.43 2.83
5268 7590 8.088981 TGTCTTGGCAAAACTTAGTTTAAACAA 58.911 29.630 20.06 13.59 34.43 2.83
5269 7591 8.927721 GTCTTGGCAAAACTTAGTTTAAACAAA 58.072 29.630 20.06 5.29 34.43 2.83
5270 7592 9.490379 TCTTGGCAAAACTTAGTTTAAACAAAA 57.510 25.926 20.06 12.33 34.43 2.44
5299 7621 9.816354 AACATAGAAGCATTACACAAAAACTTT 57.184 25.926 0.00 0.00 0.00 2.66
5300 7622 9.816354 ACATAGAAGCATTACACAAAAACTTTT 57.184 25.926 0.00 0.00 0.00 2.27
5318 7640 9.607988 AAAACTTTTGTCCATTAAAAGGTAAGG 57.392 29.630 12.96 0.00 42.48 2.69
5319 7641 7.907841 ACTTTTGTCCATTAAAAGGTAAGGT 57.092 32.000 12.96 0.00 45.06 3.50
5320 7642 8.999905 ACTTTTGTCCATTAAAAGGTAAGGTA 57.000 30.769 12.96 0.00 45.06 3.08
5321 7643 9.074576 ACTTTTGTCCATTAAAAGGTAAGGTAG 57.925 33.333 12.96 0.00 45.06 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.421268 TGACATTCTCCACAACTGCCT 59.579 47.619 0.00 0.00 0.00 4.75
1 2 1.896220 TGACATTCTCCACAACTGCC 58.104 50.000 0.00 0.00 0.00 4.85
2 3 2.163010 CCATGACATTCTCCACAACTGC 59.837 50.000 0.00 0.00 0.00 4.40
3 4 3.189910 CACCATGACATTCTCCACAACTG 59.810 47.826 0.00 0.00 0.00 3.16
4 5 3.415212 CACCATGACATTCTCCACAACT 58.585 45.455 0.00 0.00 0.00 3.16
5 6 2.489329 CCACCATGACATTCTCCACAAC 59.511 50.000 0.00 0.00 0.00 3.32
6 7 2.555006 CCCACCATGACATTCTCCACAA 60.555 50.000 0.00 0.00 0.00 3.33
7 8 1.004628 CCCACCATGACATTCTCCACA 59.995 52.381 0.00 0.00 0.00 4.17
8 9 1.004745 ACCCACCATGACATTCTCCAC 59.995 52.381 0.00 0.00 0.00 4.02
9 10 1.004628 CACCCACCATGACATTCTCCA 59.995 52.381 0.00 0.00 0.00 3.86
10 11 1.281867 TCACCCACCATGACATTCTCC 59.718 52.381 0.00 0.00 0.00 3.71
11 12 2.237143 TCTCACCCACCATGACATTCTC 59.763 50.000 0.00 0.00 0.00 2.87
12 13 2.269023 TCTCACCCACCATGACATTCT 58.731 47.619 0.00 0.00 0.00 2.40
13 14 2.787473 TCTCACCCACCATGACATTC 57.213 50.000 0.00 0.00 0.00 2.67
14 15 2.420547 CGATCTCACCCACCATGACATT 60.421 50.000 0.00 0.00 0.00 2.71
15 16 1.139654 CGATCTCACCCACCATGACAT 59.860 52.381 0.00 0.00 0.00 3.06
16 17 0.536724 CGATCTCACCCACCATGACA 59.463 55.000 0.00 0.00 0.00 3.58
17 18 0.179073 CCGATCTCACCCACCATGAC 60.179 60.000 0.00 0.00 0.00 3.06
18 19 0.325203 TCCGATCTCACCCACCATGA 60.325 55.000 0.00 0.00 0.00 3.07
19 20 0.105593 CTCCGATCTCACCCACCATG 59.894 60.000 0.00 0.00 0.00 3.66
20 21 1.050988 CCTCCGATCTCACCCACCAT 61.051 60.000 0.00 0.00 0.00 3.55
21 22 1.685765 CCTCCGATCTCACCCACCA 60.686 63.158 0.00 0.00 0.00 4.17
22 23 0.760945 ATCCTCCGATCTCACCCACC 60.761 60.000 0.00 0.00 0.00 4.61
23 24 0.676736 GATCCTCCGATCTCACCCAC 59.323 60.000 0.00 0.00 41.59 4.61
24 25 0.261696 TGATCCTCCGATCTCACCCA 59.738 55.000 2.11 0.00 44.61 4.51
25 26 0.965439 CTGATCCTCCGATCTCACCC 59.035 60.000 2.11 0.00 44.61 4.61
26 27 1.698506 ACTGATCCTCCGATCTCACC 58.301 55.000 2.11 0.00 44.61 4.02
27 28 4.023536 GTCTAACTGATCCTCCGATCTCAC 60.024 50.000 2.11 0.00 44.61 3.51
28 29 4.138290 GTCTAACTGATCCTCCGATCTCA 58.862 47.826 2.11 0.00 44.61 3.27
29 30 4.138290 TGTCTAACTGATCCTCCGATCTC 58.862 47.826 2.11 0.00 44.61 2.75
30 31 4.141287 CTGTCTAACTGATCCTCCGATCT 58.859 47.826 2.11 0.00 44.61 2.75
31 32 3.254657 CCTGTCTAACTGATCCTCCGATC 59.745 52.174 0.00 0.00 44.57 3.69
32 33 3.226777 CCTGTCTAACTGATCCTCCGAT 58.773 50.000 0.00 0.00 0.00 4.18
33 34 2.656002 CCTGTCTAACTGATCCTCCGA 58.344 52.381 0.00 0.00 0.00 4.55
34 35 1.067821 GCCTGTCTAACTGATCCTCCG 59.932 57.143 0.00 0.00 0.00 4.63
35 36 2.102252 CTGCCTGTCTAACTGATCCTCC 59.898 54.545 0.00 0.00 0.00 4.30
36 37 3.027412 TCTGCCTGTCTAACTGATCCTC 58.973 50.000 0.00 0.00 0.00 3.71
37 38 3.030291 CTCTGCCTGTCTAACTGATCCT 58.970 50.000 0.00 0.00 0.00 3.24
38 39 2.482839 GCTCTGCCTGTCTAACTGATCC 60.483 54.545 0.00 0.00 0.00 3.36
39 40 2.482839 GGCTCTGCCTGTCTAACTGATC 60.483 54.545 0.73 0.00 46.69 2.92
40 41 1.484240 GGCTCTGCCTGTCTAACTGAT 59.516 52.381 0.73 0.00 46.69 2.90
41 42 0.898320 GGCTCTGCCTGTCTAACTGA 59.102 55.000 0.73 0.00 46.69 3.41
42 43 3.450028 GGCTCTGCCTGTCTAACTG 57.550 57.895 0.73 0.00 46.69 3.16
53 54 1.294659 CGAACACCTGAAGGCTCTGC 61.295 60.000 0.00 0.00 39.32 4.26
54 55 0.318441 TCGAACACCTGAAGGCTCTG 59.682 55.000 0.00 0.00 39.32 3.35
55 56 1.270907 ATCGAACACCTGAAGGCTCT 58.729 50.000 0.00 0.00 39.32 4.09
56 57 2.930682 GTTATCGAACACCTGAAGGCTC 59.069 50.000 0.00 0.00 39.32 4.70
57 58 2.567615 AGTTATCGAACACCTGAAGGCT 59.432 45.455 0.00 0.00 38.10 4.58
58 59 2.930682 GAGTTATCGAACACCTGAAGGC 59.069 50.000 0.00 0.00 38.10 4.35
59 60 4.082190 TGAGAGTTATCGAACACCTGAAGG 60.082 45.833 0.00 0.00 38.10 3.46
60 61 5.060662 TGAGAGTTATCGAACACCTGAAG 57.939 43.478 0.00 0.00 38.10 3.02
61 62 4.082190 CCTGAGAGTTATCGAACACCTGAA 60.082 45.833 0.00 0.00 38.10 3.02
62 63 3.444034 CCTGAGAGTTATCGAACACCTGA 59.556 47.826 0.00 0.00 38.10 3.86
71 72 0.318275 GCCGCTCCTGAGAGTTATCG 60.318 60.000 0.00 0.00 42.59 2.92
73 74 0.749649 CTGCCGCTCCTGAGAGTTAT 59.250 55.000 0.00 0.00 42.59 1.89
88 89 2.282462 CCCCCACTTGACACTGCC 60.282 66.667 0.00 0.00 0.00 4.85
107 108 5.982890 AAATGAATTCCTCCAACGATGTT 57.017 34.783 2.27 0.00 0.00 2.71
111 112 4.586841 ACCAAAAATGAATTCCTCCAACGA 59.413 37.500 2.27 0.00 0.00 3.85
113 114 4.996758 CCACCAAAAATGAATTCCTCCAAC 59.003 41.667 2.27 0.00 0.00 3.77
114 115 4.657969 ACCACCAAAAATGAATTCCTCCAA 59.342 37.500 2.27 0.00 0.00 3.53
147 148 1.402984 CCGGAAGTCACAGCTCAGTAC 60.403 57.143 0.00 0.00 0.00 2.73
151 152 2.583441 CCCCGGAAGTCACAGCTCA 61.583 63.158 0.73 0.00 0.00 4.26
156 157 0.547075 TTTTCACCCCGGAAGTCACA 59.453 50.000 0.73 0.00 0.00 3.58
187 188 0.604578 CAGGCACAACCAATGAAGGG 59.395 55.000 0.00 0.00 43.14 3.95
214 215 4.370917 TCAAAACAATTCCTTCAGCAAGC 58.629 39.130 0.00 0.00 0.00 4.01
242 243 3.551846 GTTTTCACCCTGGAGAAGTTCA 58.448 45.455 5.50 0.00 0.00 3.18
244 245 2.514160 AGGTTTTCACCCTGGAGAAGTT 59.486 45.455 0.00 0.00 45.63 2.66
268 269 1.116308 TCGTTGCCCGATCCAAGATA 58.884 50.000 0.00 0.00 41.60 1.98
298 299 5.871396 ACTCCTTCAAGAAGTAACAGTGA 57.129 39.130 8.83 0.00 36.72 3.41
306 307 4.949856 TCAAAAGCAACTCCTTCAAGAAGT 59.050 37.500 8.83 0.00 36.72 3.01
314 316 3.903467 AGGTCTTCAAAAGCAACTCCTT 58.097 40.909 0.00 0.00 0.00 3.36
318 320 8.870075 AATATAGAAGGTCTTCAAAAGCAACT 57.130 30.769 12.54 0.00 41.84 3.16
347 350 4.105754 TCACCACCAAATACAACATCCA 57.894 40.909 0.00 0.00 0.00 3.41
350 353 6.183360 ACACAAATCACCACCAAATACAACAT 60.183 34.615 0.00 0.00 0.00 2.71
395 405 2.997897 GGTCCCACCAGAGCGACT 60.998 66.667 0.00 0.00 38.42 4.18
446 456 1.317613 TCCAGGATGCACACAACAAC 58.682 50.000 0.00 0.00 31.97 3.32
448 458 1.202915 ACATCCAGGATGCACACAACA 60.203 47.619 27.17 0.00 43.15 3.33
492 502 4.758674 CAGATATCAATTGCATCCGGTCTT 59.241 41.667 0.00 0.00 0.00 3.01
496 506 2.159612 CGCAGATATCAATTGCATCCGG 60.160 50.000 13.88 0.00 37.69 5.14
497 507 2.726989 GCGCAGATATCAATTGCATCCG 60.727 50.000 13.88 12.02 37.69 4.18
500 510 1.198408 CCGCGCAGATATCAATTGCAT 59.802 47.619 8.75 0.00 37.69 3.96
503 513 0.587768 TGCCGCGCAGATATCAATTG 59.412 50.000 8.75 0.00 33.32 2.32
505 515 1.527034 AATGCCGCGCAGATATCAAT 58.473 45.000 8.75 0.00 43.65 2.57
506 516 2.162319 TAATGCCGCGCAGATATCAA 57.838 45.000 8.75 0.00 43.65 2.57
507 517 2.162319 TTAATGCCGCGCAGATATCA 57.838 45.000 8.75 0.00 43.65 2.15
508 518 6.712241 ATATATTAATGCCGCGCAGATATC 57.288 37.500 8.75 0.00 43.65 1.63
509 519 7.307989 GGAAATATATTAATGCCGCGCAGATAT 60.308 37.037 8.75 10.28 43.65 1.63
510 520 6.018262 GGAAATATATTAATGCCGCGCAGATA 60.018 38.462 8.75 3.94 43.65 1.98
511 521 5.220854 GGAAATATATTAATGCCGCGCAGAT 60.221 40.000 8.75 1.83 43.65 2.90
512 522 4.094294 GGAAATATATTAATGCCGCGCAGA 59.906 41.667 8.75 0.00 43.65 4.26
513 523 4.342772 GGAAATATATTAATGCCGCGCAG 58.657 43.478 8.75 0.00 43.65 5.18
514 524 3.127895 GGGAAATATATTAATGCCGCGCA 59.872 43.478 8.75 2.46 44.86 6.09
515 525 3.377172 AGGGAAATATATTAATGCCGCGC 59.623 43.478 0.00 0.00 0.00 6.86
516 526 5.560966 AAGGGAAATATATTAATGCCGCG 57.439 39.130 0.00 0.00 0.00 6.46
517 527 9.699703 TTTTAAAGGGAAATATATTAATGCCGC 57.300 29.630 0.00 0.00 0.00 6.53
565 576 6.954944 TCTGGTATTTGTTTGAGTCGAAAAG 58.045 36.000 0.00 0.00 0.00 2.27
570 581 6.017440 TCCTTTTCTGGTATTTGTTTGAGTCG 60.017 38.462 0.00 0.00 0.00 4.18
573 584 6.152379 GCTCCTTTTCTGGTATTTGTTTGAG 58.848 40.000 0.00 0.00 0.00 3.02
600 618 3.181475 CGATGGGATATATCACGGGGAAG 60.181 52.174 14.60 0.00 31.21 3.46
602 620 2.384828 CGATGGGATATATCACGGGGA 58.615 52.381 14.60 0.00 31.21 4.81
624 642 1.153823 CGGGTCGCCTTGTCAGTAG 60.154 63.158 0.00 0.00 0.00 2.57
635 653 2.359478 AAATGTCACCCGGGTCGC 60.359 61.111 27.51 20.09 0.00 5.19
645 663 1.460743 CTTGCGCGAGAAGAAATGTCA 59.539 47.619 20.57 0.00 0.00 3.58
753 772 3.522731 CGCACGAGGGGAGAGGAG 61.523 72.222 0.00 0.00 0.00 3.69
821 840 7.044445 GGTTTATATATTCGGATTAGCGTCGTC 60.044 40.741 0.00 0.00 0.00 4.20
856 875 3.462678 GTGGGGAGGAGAGACGCC 61.463 72.222 0.00 0.00 39.15 5.68
860 880 1.229209 GGTGTGTGGGGAGGAGAGA 60.229 63.158 0.00 0.00 0.00 3.10
918 938 0.820226 TGAGATCACGAGGGAGCTTG 59.180 55.000 0.00 0.00 32.85 4.01
950 970 4.072131 CGAGGTGGAAAGATGAGGAAAAA 58.928 43.478 0.00 0.00 0.00 1.94
957 977 0.976641 AGCACGAGGTGGAAAGATGA 59.023 50.000 0.00 0.00 33.64 2.92
1179 1199 4.640690 AGGTGGGGCACGTCCTCT 62.641 66.667 5.66 0.00 35.85 3.69
1272 1292 0.183492 AAGCAGACCAGAGCACCAAA 59.817 50.000 0.00 0.00 0.00 3.28
1283 1303 1.396301 CGAGCTGAAATCAAGCAGACC 59.604 52.381 0.00 0.00 34.06 3.85
1337 1371 1.269051 CCACAGAAGGGCGACAAAAAC 60.269 52.381 0.00 0.00 0.00 2.43
1344 1378 1.112113 GAGTATCCACAGAAGGGCGA 58.888 55.000 0.00 0.00 0.00 5.54
1360 1394 8.786826 TCGTGAAAAATATAAAGATGTGGAGT 57.213 30.769 0.00 0.00 0.00 3.85
1392 1432 5.473931 CGATCAGTTTATCCTCGAATCCAT 58.526 41.667 0.00 0.00 0.00 3.41
1540 1591 7.558161 AATAAGATGTGAGCAATCGATTCAA 57.442 32.000 7.92 0.00 0.00 2.69
1557 1608 4.752101 GCAGATCAGCAACGGTAATAAGAT 59.248 41.667 5.05 0.00 0.00 2.40
1562 1613 2.093500 TCTGCAGATCAGCAACGGTAAT 60.093 45.455 13.74 0.00 45.13 1.89
1665 1716 1.234821 GCGTGTTTGGATGGAACTGA 58.765 50.000 0.00 0.00 0.00 3.41
1718 1769 0.181587 TGGATGGACAACACGTGGTT 59.818 50.000 21.57 8.96 41.47 3.67
1730 1781 0.030195 TACTGCCTGGGATGGATGGA 60.030 55.000 0.00 0.00 0.00 3.41
1731 1782 0.109342 GTACTGCCTGGGATGGATGG 59.891 60.000 0.00 0.00 0.00 3.51
1732 1783 1.135094 AGTACTGCCTGGGATGGATG 58.865 55.000 0.00 0.00 0.00 3.51
1733 1784 1.771255 GAAGTACTGCCTGGGATGGAT 59.229 52.381 0.00 0.00 0.00 3.41
1807 1858 3.821841 CATTCTGTTCGCCCAAAAGTAC 58.178 45.455 0.00 0.00 0.00 2.73
1808 1859 2.227865 GCATTCTGTTCGCCCAAAAGTA 59.772 45.455 0.00 0.00 0.00 2.24
1842 1904 1.081892 CATCCACAAAGTCAGCCTCG 58.918 55.000 0.00 0.00 0.00 4.63
1893 1956 2.750350 CGGAAGTGGGTGCCTCTT 59.250 61.111 0.00 0.00 39.62 2.85
1935 1998 0.390860 CCTCATCGGGCTGGAAGTAG 59.609 60.000 0.00 0.00 35.30 2.57
1950 2013 3.950794 GATGGCCGCGTTCACCTCA 62.951 63.158 4.92 0.00 0.00 3.86
2088 2151 7.520686 ACAAATGCAAAACAAACAAGAAGAAG 58.479 30.769 0.00 0.00 0.00 2.85
2190 2254 5.679734 AGCACTCAAAATCAGTTACTGTG 57.320 39.130 12.41 3.42 32.61 3.66
2208 2272 5.488341 TCTAAATCACACCTTCCTAAGCAC 58.512 41.667 0.00 0.00 0.00 4.40
2236 2300 3.671008 ATATTGTATTCGCAGGCGGTA 57.329 42.857 14.24 4.85 40.25 4.02
2245 2309 5.374080 GTGTCGCCATCAATATTGTATTCG 58.626 41.667 14.97 13.69 0.00 3.34
2260 2324 0.107897 AATGCTTATCGGTGTCGCCA 60.108 50.000 2.76 0.00 36.97 5.69
2263 2327 4.034048 AGCTAAAAATGCTTATCGGTGTCG 59.966 41.667 0.00 0.00 37.52 4.35
2270 2334 6.442513 AGGTGACAGCTAAAAATGCTTATC 57.557 37.500 5.09 0.00 38.92 1.75
2299 2363 6.974048 TCAACATTGCAGCATCATGTTATTAC 59.026 34.615 20.32 0.00 34.17 1.89
2300 2364 7.098074 TCAACATTGCAGCATCATGTTATTA 57.902 32.000 20.32 9.96 34.17 0.98
2301 2365 5.968254 TCAACATTGCAGCATCATGTTATT 58.032 33.333 20.32 2.08 34.17 1.40
2302 2366 5.585820 TCAACATTGCAGCATCATGTTAT 57.414 34.783 20.32 2.69 34.17 1.89
2303 2367 5.585820 ATCAACATTGCAGCATCATGTTA 57.414 34.783 20.32 12.08 34.17 2.41
2304 2368 3.945981 TCAACATTGCAGCATCATGTT 57.054 38.095 16.61 16.61 36.05 2.71
2305 2369 5.585820 TTATCAACATTGCAGCATCATGT 57.414 34.783 6.86 6.86 0.00 3.21
2328 2392 4.141711 ACACACTTCTAAGCAGTTTCAGGA 60.142 41.667 0.00 0.00 0.00 3.86
2352 2416 2.967201 TCAGGGAGTTTGTTCCGAAGTA 59.033 45.455 0.00 0.00 38.17 2.24
2414 2478 0.442310 CACCATGTCGTTAAGTGCCG 59.558 55.000 0.00 0.00 0.00 5.69
2462 2526 5.950758 ACATAACGGTTGACAAATAGCAA 57.049 34.783 3.07 0.00 0.00 3.91
2539 2603 4.650754 TCGAGAATAGAAGCCCTTGTAC 57.349 45.455 0.00 0.00 0.00 2.90
2548 2612 5.860182 TGTAACGGTGTTTCGAGAATAGAAG 59.140 40.000 0.00 0.00 29.57 2.85
2784 2848 2.349590 TGTGAGACATGGAATTGAGCG 58.650 47.619 0.00 0.00 0.00 5.03
2816 2880 8.031277 GTCTACGGACTTCCTGAAATTAAGTAA 58.969 37.037 0.00 0.00 39.24 2.24
2817 2881 7.542025 GTCTACGGACTTCCTGAAATTAAGTA 58.458 38.462 0.00 0.00 39.24 2.24
3038 3102 3.657956 AGCAGCGTTGATAGCTCTC 57.342 52.632 2.38 0.00 44.06 3.20
3280 3344 7.919690 AGAATGAATGATAACAACATACCACG 58.080 34.615 0.00 0.00 31.28 4.94
3453 5560 1.374758 CCACTGTCCTTGAGCCGTC 60.375 63.158 0.00 0.00 0.00 4.79
3696 5803 8.206189 TGTTGCTGATTCTATCATGACTTGATA 58.794 33.333 0.00 9.88 43.43 2.15
3699 5806 6.673154 TGTTGCTGATTCTATCATGACTTG 57.327 37.500 0.00 0.00 38.85 3.16
3756 5863 4.098501 GGAATATGACCAGGGCTTTCTTTG 59.901 45.833 0.00 0.00 0.00 2.77
3834 5942 6.727231 TGTACTTGAGAGTTATGGGGAAGTTA 59.273 38.462 0.00 0.00 37.33 2.24
4011 6119 7.446769 TGTTTCCTGCTGTACTTACATAGAAA 58.553 34.615 0.00 0.76 35.36 2.52
4058 6166 5.235186 CAGCATAAGGTTTGATAGGAGTTCG 59.765 44.000 0.00 0.00 0.00 3.95
4297 6406 1.153107 TGCTCCAGCGGATCCATTG 60.153 57.895 13.41 8.98 45.83 2.82
4306 6415 1.139308 CTCTCACTCTGCTCCAGCG 59.861 63.158 0.00 0.00 45.83 5.18
4335 6444 7.672660 ACACATGCTCAATATATCCATCCAAAT 59.327 33.333 0.00 0.00 0.00 2.32
4338 6447 6.130692 ACACATGCTCAATATATCCATCCA 57.869 37.500 0.00 0.00 0.00 3.41
5055 7377 4.975502 TGACGAAATCACATTGCTGAAAAC 59.024 37.500 0.00 0.00 29.99 2.43
5056 7378 5.180367 TGACGAAATCACATTGCTGAAAA 57.820 34.783 0.00 0.00 29.99 2.29
5062 7384 2.866198 TGCATGACGAAATCACATTGC 58.134 42.857 0.00 0.00 41.24 3.56
5086 7408 9.823098 GAAATGTTTGTTATGCATGCAAAATTA 57.177 25.926 26.68 9.76 34.47 1.40
5111 7433 6.530534 GCGTTATCTGACAAGCTACTTTAAGA 59.469 38.462 0.00 0.00 0.00 2.10
5121 7443 5.063438 TGTTCTTATGCGTTATCTGACAAGC 59.937 40.000 0.00 0.00 0.00 4.01
5122 7444 6.090763 TGTGTTCTTATGCGTTATCTGACAAG 59.909 38.462 0.00 0.00 0.00 3.16
5123 7445 5.929415 TGTGTTCTTATGCGTTATCTGACAA 59.071 36.000 0.00 0.00 0.00 3.18
5124 7446 5.474825 TGTGTTCTTATGCGTTATCTGACA 58.525 37.500 0.00 0.00 0.00 3.58
5125 7447 6.589830 ATGTGTTCTTATGCGTTATCTGAC 57.410 37.500 0.00 0.00 0.00 3.51
5126 7448 7.762159 TGTTATGTGTTCTTATGCGTTATCTGA 59.238 33.333 0.00 0.00 0.00 3.27
5127 7449 7.905126 TGTTATGTGTTCTTATGCGTTATCTG 58.095 34.615 0.00 0.00 0.00 2.90
5128 7450 8.487313 TTGTTATGTGTTCTTATGCGTTATCT 57.513 30.769 0.00 0.00 0.00 1.98
5129 7451 8.995906 GTTTGTTATGTGTTCTTATGCGTTATC 58.004 33.333 0.00 0.00 0.00 1.75
5130 7452 8.508062 TGTTTGTTATGTGTTCTTATGCGTTAT 58.492 29.630 0.00 0.00 0.00 1.89
5131 7453 7.862648 TGTTTGTTATGTGTTCTTATGCGTTA 58.137 30.769 0.00 0.00 0.00 3.18
5132 7454 6.730175 TGTTTGTTATGTGTTCTTATGCGTT 58.270 32.000 0.00 0.00 0.00 4.84
5133 7455 6.017440 ACTGTTTGTTATGTGTTCTTATGCGT 60.017 34.615 0.00 0.00 0.00 5.24
5134 7456 6.303022 CACTGTTTGTTATGTGTTCTTATGCG 59.697 38.462 0.00 0.00 0.00 4.73
5135 7457 7.359595 TCACTGTTTGTTATGTGTTCTTATGC 58.640 34.615 0.00 0.00 0.00 3.14
5136 7458 9.729023 TTTCACTGTTTGTTATGTGTTCTTATG 57.271 29.630 0.00 0.00 0.00 1.90
5138 7460 9.781834 CTTTTCACTGTTTGTTATGTGTTCTTA 57.218 29.630 0.00 0.00 0.00 2.10
5139 7461 7.759433 CCTTTTCACTGTTTGTTATGTGTTCTT 59.241 33.333 0.00 0.00 0.00 2.52
5140 7462 7.093945 ACCTTTTCACTGTTTGTTATGTGTTCT 60.094 33.333 0.00 0.00 0.00 3.01
5141 7463 7.009174 CACCTTTTCACTGTTTGTTATGTGTTC 59.991 37.037 0.00 0.00 0.00 3.18
5142 7464 6.811170 CACCTTTTCACTGTTTGTTATGTGTT 59.189 34.615 0.00 0.00 0.00 3.32
5143 7465 6.329496 CACCTTTTCACTGTTTGTTATGTGT 58.671 36.000 0.00 0.00 0.00 3.72
5144 7466 5.748152 CCACCTTTTCACTGTTTGTTATGTG 59.252 40.000 0.00 0.00 0.00 3.21
5145 7467 5.681179 GCCACCTTTTCACTGTTTGTTATGT 60.681 40.000 0.00 0.00 0.00 2.29
5146 7468 4.744631 GCCACCTTTTCACTGTTTGTTATG 59.255 41.667 0.00 0.00 0.00 1.90
5147 7469 4.404073 TGCCACCTTTTCACTGTTTGTTAT 59.596 37.500 0.00 0.00 0.00 1.89
5148 7470 3.764434 TGCCACCTTTTCACTGTTTGTTA 59.236 39.130 0.00 0.00 0.00 2.41
5149 7471 2.564947 TGCCACCTTTTCACTGTTTGTT 59.435 40.909 0.00 0.00 0.00 2.83
5150 7472 2.094234 GTGCCACCTTTTCACTGTTTGT 60.094 45.455 0.00 0.00 0.00 2.83
5151 7473 2.094286 TGTGCCACCTTTTCACTGTTTG 60.094 45.455 0.00 0.00 0.00 2.93
5152 7474 2.175202 TGTGCCACCTTTTCACTGTTT 58.825 42.857 0.00 0.00 0.00 2.83
5153 7475 1.846007 TGTGCCACCTTTTCACTGTT 58.154 45.000 0.00 0.00 0.00 3.16
5154 7476 1.846007 TTGTGCCACCTTTTCACTGT 58.154 45.000 0.00 0.00 0.00 3.55
5155 7477 2.539476 GTTTGTGCCACCTTTTCACTG 58.461 47.619 0.00 0.00 0.00 3.66
5156 7478 1.134175 CGTTTGTGCCACCTTTTCACT 59.866 47.619 0.00 0.00 0.00 3.41
5157 7479 1.555477 CGTTTGTGCCACCTTTTCAC 58.445 50.000 0.00 0.00 0.00 3.18
5158 7480 0.457851 CCGTTTGTGCCACCTTTTCA 59.542 50.000 0.00 0.00 0.00 2.69
5159 7481 0.741915 TCCGTTTGTGCCACCTTTTC 59.258 50.000 0.00 0.00 0.00 2.29
5160 7482 1.136110 CTTCCGTTTGTGCCACCTTTT 59.864 47.619 0.00 0.00 0.00 2.27
5161 7483 0.744281 CTTCCGTTTGTGCCACCTTT 59.256 50.000 0.00 0.00 0.00 3.11
5162 7484 0.106918 TCTTCCGTTTGTGCCACCTT 60.107 50.000 0.00 0.00 0.00 3.50
5163 7485 0.535102 CTCTTCCGTTTGTGCCACCT 60.535 55.000 0.00 0.00 0.00 4.00
5164 7486 1.949257 CTCTTCCGTTTGTGCCACC 59.051 57.895 0.00 0.00 0.00 4.61
5165 7487 1.282875 GCTCTTCCGTTTGTGCCAC 59.717 57.895 0.00 0.00 0.00 5.01
5166 7488 2.250939 CGCTCTTCCGTTTGTGCCA 61.251 57.895 0.00 0.00 0.00 4.92
5167 7489 1.959226 TCGCTCTTCCGTTTGTGCC 60.959 57.895 0.00 0.00 0.00 5.01
5168 7490 1.204312 GTCGCTCTTCCGTTTGTGC 59.796 57.895 0.00 0.00 0.00 4.57
5169 7491 0.934496 TTGTCGCTCTTCCGTTTGTG 59.066 50.000 0.00 0.00 0.00 3.33
5170 7492 1.329599 GTTTGTCGCTCTTCCGTTTGT 59.670 47.619 0.00 0.00 0.00 2.83
5171 7493 1.597663 AGTTTGTCGCTCTTCCGTTTG 59.402 47.619 0.00 0.00 0.00 2.93
5172 7494 1.949465 AGTTTGTCGCTCTTCCGTTT 58.051 45.000 0.00 0.00 0.00 3.60
5173 7495 2.673833 CTAGTTTGTCGCTCTTCCGTT 58.326 47.619 0.00 0.00 0.00 4.44
5174 7496 1.669211 GCTAGTTTGTCGCTCTTCCGT 60.669 52.381 0.00 0.00 0.00 4.69
5175 7497 0.992802 GCTAGTTTGTCGCTCTTCCG 59.007 55.000 0.00 0.00 0.00 4.30
5176 7498 1.996191 CAGCTAGTTTGTCGCTCTTCC 59.004 52.381 0.00 0.00 0.00 3.46
5177 7499 1.996191 CCAGCTAGTTTGTCGCTCTTC 59.004 52.381 0.00 0.00 0.00 2.87
5178 7500 1.338200 CCCAGCTAGTTTGTCGCTCTT 60.338 52.381 0.00 0.00 0.00 2.85
5179 7501 0.247736 CCCAGCTAGTTTGTCGCTCT 59.752 55.000 0.00 0.00 0.00 4.09
5180 7502 1.362406 GCCCAGCTAGTTTGTCGCTC 61.362 60.000 0.00 0.00 0.00 5.03
5181 7503 1.376037 GCCCAGCTAGTTTGTCGCT 60.376 57.895 0.00 0.00 0.00 4.93
5182 7504 1.639298 CTGCCCAGCTAGTTTGTCGC 61.639 60.000 0.00 0.00 0.00 5.19
5183 7505 0.037326 TCTGCCCAGCTAGTTTGTCG 60.037 55.000 0.00 0.00 0.00 4.35
5184 7506 2.185004 TTCTGCCCAGCTAGTTTGTC 57.815 50.000 0.00 0.00 0.00 3.18
5185 7507 2.887151 ATTCTGCCCAGCTAGTTTGT 57.113 45.000 0.00 0.00 0.00 2.83
5186 7508 5.221126 GGATTTATTCTGCCCAGCTAGTTTG 60.221 44.000 0.00 0.00 0.00 2.93
5187 7509 4.889995 GGATTTATTCTGCCCAGCTAGTTT 59.110 41.667 0.00 0.00 0.00 2.66
5188 7510 4.079787 TGGATTTATTCTGCCCAGCTAGTT 60.080 41.667 0.00 0.00 0.00 2.24
5189 7511 3.459598 TGGATTTATTCTGCCCAGCTAGT 59.540 43.478 0.00 0.00 0.00 2.57
5190 7512 4.090761 TGGATTTATTCTGCCCAGCTAG 57.909 45.455 0.00 0.00 0.00 3.42
5191 7513 4.518278 TTGGATTTATTCTGCCCAGCTA 57.482 40.909 0.00 0.00 0.00 3.32
5192 7514 3.386932 TTGGATTTATTCTGCCCAGCT 57.613 42.857 0.00 0.00 0.00 4.24
5193 7515 3.195396 TGTTTGGATTTATTCTGCCCAGC 59.805 43.478 0.00 0.00 0.00 4.85
5194 7516 5.404466 TTGTTTGGATTTATTCTGCCCAG 57.596 39.130 0.00 0.00 0.00 4.45
5195 7517 5.279910 CCTTTGTTTGGATTTATTCTGCCCA 60.280 40.000 0.00 0.00 0.00 5.36
5196 7518 5.178061 CCTTTGTTTGGATTTATTCTGCCC 58.822 41.667 0.00 0.00 0.00 5.36
5197 7519 5.793817 ACCTTTGTTTGGATTTATTCTGCC 58.206 37.500 0.00 0.00 0.00 4.85
5198 7520 7.657354 AGAAACCTTTGTTTGGATTTATTCTGC 59.343 33.333 0.00 0.00 44.57 4.26
5199 7521 8.981647 CAGAAACCTTTGTTTGGATTTATTCTG 58.018 33.333 0.00 0.00 44.57 3.02
5200 7522 8.150296 CCAGAAACCTTTGTTTGGATTTATTCT 58.850 33.333 0.00 0.00 44.57 2.40
5201 7523 7.095229 GCCAGAAACCTTTGTTTGGATTTATTC 60.095 37.037 0.00 0.00 44.57 1.75
5202 7524 6.710295 GCCAGAAACCTTTGTTTGGATTTATT 59.290 34.615 0.00 0.00 44.57 1.40
5203 7525 6.183361 TGCCAGAAACCTTTGTTTGGATTTAT 60.183 34.615 0.00 0.00 44.57 1.40
5204 7526 5.129485 TGCCAGAAACCTTTGTTTGGATTTA 59.871 36.000 0.00 0.00 44.57 1.40
5205 7527 4.080638 TGCCAGAAACCTTTGTTTGGATTT 60.081 37.500 0.00 0.00 44.57 2.17
5206 7528 3.454082 TGCCAGAAACCTTTGTTTGGATT 59.546 39.130 0.00 0.00 44.57 3.01
5207 7529 3.037549 TGCCAGAAACCTTTGTTTGGAT 58.962 40.909 0.00 0.00 44.57 3.41
5208 7530 2.461695 TGCCAGAAACCTTTGTTTGGA 58.538 42.857 0.00 0.00 44.57 3.53
5209 7531 2.977772 TGCCAGAAACCTTTGTTTGG 57.022 45.000 0.00 0.00 44.57 3.28
5210 7532 4.942852 TGTATGCCAGAAACCTTTGTTTG 58.057 39.130 0.00 0.00 44.57 2.93
5212 7534 6.493458 ACTTATGTATGCCAGAAACCTTTGTT 59.507 34.615 0.00 0.00 35.82 2.83
5213 7535 6.010219 ACTTATGTATGCCAGAAACCTTTGT 58.990 36.000 0.00 0.00 0.00 2.83
5214 7536 6.515272 ACTTATGTATGCCAGAAACCTTTG 57.485 37.500 0.00 0.00 0.00 2.77
5215 7537 7.888546 AGTTACTTATGTATGCCAGAAACCTTT 59.111 33.333 0.00 0.00 0.00 3.11
5216 7538 7.402862 AGTTACTTATGTATGCCAGAAACCTT 58.597 34.615 0.00 0.00 0.00 3.50
5217 7539 6.958767 AGTTACTTATGTATGCCAGAAACCT 58.041 36.000 0.00 0.00 0.00 3.50
5218 7540 7.120726 ACAAGTTACTTATGTATGCCAGAAACC 59.879 37.037 0.00 0.00 0.00 3.27
5219 7541 8.040716 ACAAGTTACTTATGTATGCCAGAAAC 57.959 34.615 0.00 0.00 0.00 2.78
5220 7542 8.100791 AGACAAGTTACTTATGTATGCCAGAAA 58.899 33.333 0.00 0.00 0.00 2.52
5221 7543 7.620880 AGACAAGTTACTTATGTATGCCAGAA 58.379 34.615 0.00 0.00 0.00 3.02
5222 7544 7.182817 AGACAAGTTACTTATGTATGCCAGA 57.817 36.000 0.00 0.00 0.00 3.86
5223 7545 7.201644 CCAAGACAAGTTACTTATGTATGCCAG 60.202 40.741 0.00 0.00 0.00 4.85
5224 7546 6.597672 CCAAGACAAGTTACTTATGTATGCCA 59.402 38.462 0.00 0.00 0.00 4.92
5225 7547 6.458342 GCCAAGACAAGTTACTTATGTATGCC 60.458 42.308 0.00 0.00 0.00 4.40
5226 7548 6.093495 TGCCAAGACAAGTTACTTATGTATGC 59.907 38.462 0.00 0.00 0.00 3.14
5227 7549 7.609760 TGCCAAGACAAGTTACTTATGTATG 57.390 36.000 0.00 0.00 0.00 2.39
5228 7550 8.630054 TTTGCCAAGACAAGTTACTTATGTAT 57.370 30.769 0.00 0.00 0.00 2.29
5229 7551 8.347035 GTTTTGCCAAGACAAGTTACTTATGTA 58.653 33.333 0.00 0.00 0.00 2.29
5230 7552 6.952773 TTTGCCAAGACAAGTTACTTATGT 57.047 33.333 0.00 0.00 0.00 2.29
5231 7553 7.425606 AGTTTTGCCAAGACAAGTTACTTATG 58.574 34.615 0.00 0.00 0.00 1.90
5232 7554 7.582667 AGTTTTGCCAAGACAAGTTACTTAT 57.417 32.000 0.00 0.00 0.00 1.73
5233 7555 7.399245 AAGTTTTGCCAAGACAAGTTACTTA 57.601 32.000 0.00 0.00 31.52 2.24
5234 7556 5.914898 AGTTTTGCCAAGACAAGTTACTT 57.085 34.783 0.64 0.00 0.00 2.24
5235 7557 5.914898 AAGTTTTGCCAAGACAAGTTACT 57.085 34.783 0.64 0.00 0.00 2.24
5236 7558 6.792326 ACTAAGTTTTGCCAAGACAAGTTAC 58.208 36.000 0.64 0.00 0.00 2.50
5237 7559 7.399245 AACTAAGTTTTGCCAAGACAAGTTA 57.601 32.000 13.59 3.47 0.00 2.24
5238 7560 5.914898 ACTAAGTTTTGCCAAGACAAGTT 57.085 34.783 0.64 0.00 0.00 2.66
5239 7561 5.914898 AACTAAGTTTTGCCAAGACAAGT 57.085 34.783 0.64 1.29 0.00 3.16
5240 7562 8.592155 GTTTAAACTAAGTTTTGCCAAGACAAG 58.408 33.333 11.18 0.70 37.01 3.16
5241 7563 8.088981 TGTTTAAACTAAGTTTTGCCAAGACAA 58.911 29.630 18.72 0.00 37.01 3.18
5242 7564 7.603651 TGTTTAAACTAAGTTTTGCCAAGACA 58.396 30.769 18.72 0.00 37.01 3.41
5243 7565 8.468720 TTGTTTAAACTAAGTTTTGCCAAGAC 57.531 30.769 18.72 0.00 37.01 3.01
5244 7566 9.490379 TTTTGTTTAAACTAAGTTTTGCCAAGA 57.510 25.926 18.72 0.00 37.01 3.02
5273 7595 9.816354 AAAGTTTTTGTGTAATGCTTCTATGTT 57.184 25.926 0.00 0.00 0.00 2.71
5274 7596 9.816354 AAAAGTTTTTGTGTAATGCTTCTATGT 57.184 25.926 0.00 0.00 0.00 2.29
5292 7614 9.607988 CCTTACCTTTTAATGGACAAAAGTTTT 57.392 29.630 3.80 0.00 40.03 2.43
5293 7615 8.764558 ACCTTACCTTTTAATGGACAAAAGTTT 58.235 29.630 3.80 0.00 40.03 2.66
5294 7616 8.313944 ACCTTACCTTTTAATGGACAAAAGTT 57.686 30.769 3.80 0.00 40.03 2.66
5295 7617 7.907841 ACCTTACCTTTTAATGGACAAAAGT 57.092 32.000 3.80 0.00 40.03 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.