Multiple sequence alignment - TraesCS3A01G107500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G107500 chr3A 100.000 6413 0 0 1 6413 72412146 72418558 0.000000e+00 11843.0
1 TraesCS3A01G107500 chr3B 94.200 3276 125 32 657 3912 102751916 102755146 0.000000e+00 4937.0
2 TraesCS3A01G107500 chr3B 89.681 1192 57 21 4575 5722 102756527 102757696 0.000000e+00 1459.0
3 TraesCS3A01G107500 chr3B 94.955 674 32 2 3909 4582 102755174 102755845 0.000000e+00 1055.0
4 TraesCS3A01G107500 chr3B 93.785 177 8 2 6220 6394 102758443 102758618 4.930000e-66 263.0
5 TraesCS3A01G107500 chr3B 93.082 159 8 2 395 552 102745385 102745541 5.000000e-56 230.0
6 TraesCS3A01G107500 chr3B 97.403 77 2 0 6137 6213 102758318 102758394 1.450000e-26 132.0
7 TraesCS3A01G107500 chr3B 91.176 68 4 2 557 623 102745571 102745637 2.460000e-14 91.6
8 TraesCS3A01G107500 chr3D 94.388 3225 123 27 657 3852 63353997 63357192 0.000000e+00 4900.0
9 TraesCS3A01G107500 chr3D 94.177 1975 87 19 3909 5863 63357266 63359232 0.000000e+00 2985.0
10 TraesCS3A01G107500 chr3D 88.889 225 18 4 5907 6126 63359945 63360167 2.950000e-68 270.0
11 TraesCS3A01G107500 chr3D 83.067 313 12 16 395 667 63353671 63353982 4.970000e-61 246.0
12 TraesCS3A01G107500 chr3D 93.919 148 2 1 6137 6284 63360299 63360439 3.890000e-52 217.0
13 TraesCS3A01G107500 chr3D 92.405 79 4 1 6316 6394 63360626 63360702 1.890000e-20 111.0
14 TraesCS3A01G107500 chrUn 100.000 402 0 0 2166 2567 478567559 478567960 0.000000e+00 743.0
15 TraesCS3A01G107500 chr6A 98.734 395 5 0 1 395 187466475 187466869 0.000000e+00 702.0
16 TraesCS3A01G107500 chr2B 98.481 395 5 1 1 395 777185815 777185422 0.000000e+00 695.0
17 TraesCS3A01G107500 chr5D 85.317 647 83 8 2779 3414 493938633 493939278 0.000000e+00 658.0
18 TraesCS3A01G107500 chr1D 85.342 307 37 7 3513 3815 468053788 468054090 1.740000e-80 311.0
19 TraesCS3A01G107500 chr1A 85.235 298 37 6 3513 3806 561092774 561093068 3.760000e-77 300.0
20 TraesCS3A01G107500 chr7A 86.611 239 28 2 3570 3805 437228153 437227916 1.770000e-65 261.0
21 TraesCS3A01G107500 chr5A 86.307 241 29 2 3564 3801 590448553 590448792 6.380000e-65 259.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G107500 chr3A 72412146 72418558 6412 False 11843.000000 11843 100.000000 1 6413 1 chr3A.!!$F1 6412
1 TraesCS3A01G107500 chr3B 102751916 102758618 6702 False 1569.200000 4937 94.004800 657 6394 5 chr3B.!!$F2 5737
2 TraesCS3A01G107500 chr3D 63353671 63360702 7031 False 1454.833333 4900 91.140833 395 6394 6 chr3D.!!$F1 5999
3 TraesCS3A01G107500 chr5D 493938633 493939278 645 False 658.000000 658 85.317000 2779 3414 1 chr5D.!!$F1 635

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
840 907 0.035725 GGCCCGTTAACTAACTGCCT 60.036 55.000 16.64 0.0 42.99 4.75 F
914 981 0.249911 GCCTTCCACTTGTCTCACGT 60.250 55.000 0.00 0.0 0.00 4.49 F
1382 1462 0.250234 TGGGAAGGTTCATCTCTGCG 59.750 55.000 0.00 0.0 0.00 5.18 F
1395 1475 0.311790 CTCTGCGGTTGTTTGCATGT 59.688 50.000 0.00 0.0 40.89 3.21 F
3383 3493 1.000274 GGAAAAGGCTTGCATTCACGT 60.000 47.619 0.00 0.0 0.00 4.49 F
3897 4012 0.609957 CTGTGCATGCCTTTGAGGGA 60.610 55.000 16.68 0.0 41.08 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1780 1880 1.668419 ATATTCTGCCTCCGCACAAC 58.332 50.000 0.00 0.0 41.12 3.32 R
2682 2782 4.473444 TGAAGAGCATCCAAAAGGAAAGT 58.527 39.130 0.00 0.0 33.66 2.66 R
3344 3454 1.282157 CCAGGTCTTCCCCAGGTAAAG 59.718 57.143 0.00 0.0 0.00 1.85 R
3425 3535 6.814506 ATCAGCCAGATAACTGAATAATGC 57.185 37.500 0.79 0.0 45.49 3.56 R
4875 5710 0.674895 ACTGTGGCGGCAAAGAGATC 60.675 55.000 33.70 11.3 0.00 2.75 R
5903 7381 0.249741 CCGAGTGGTTTCTTCGGTGT 60.250 55.000 4.11 0.0 38.94 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 6.973843 CATGTCTCTCATGTTTCTTTTTGGA 58.026 36.000 0.00 0.00 46.18 3.53
27 28 6.624352 TGTCTCTCATGTTTCTTTTTGGAG 57.376 37.500 0.00 0.00 0.00 3.86
28 29 5.532406 TGTCTCTCATGTTTCTTTTTGGAGG 59.468 40.000 0.00 0.00 0.00 4.30
29 30 4.520492 TCTCTCATGTTTCTTTTTGGAGGC 59.480 41.667 0.00 0.00 0.00 4.70
30 31 4.214310 TCTCATGTTTCTTTTTGGAGGCA 58.786 39.130 0.00 0.00 0.00 4.75
31 32 4.648762 TCTCATGTTTCTTTTTGGAGGCAA 59.351 37.500 0.00 0.00 0.00 4.52
32 33 5.305128 TCTCATGTTTCTTTTTGGAGGCAAT 59.695 36.000 0.00 0.00 0.00 3.56
33 34 5.540911 TCATGTTTCTTTTTGGAGGCAATC 58.459 37.500 0.00 0.00 0.00 2.67
34 35 5.070180 TCATGTTTCTTTTTGGAGGCAATCA 59.930 36.000 0.00 0.00 0.00 2.57
35 36 4.692228 TGTTTCTTTTTGGAGGCAATCAC 58.308 39.130 0.00 0.00 0.00 3.06
36 37 3.641437 TTCTTTTTGGAGGCAATCACG 57.359 42.857 0.00 0.00 0.00 4.35
37 38 2.582052 TCTTTTTGGAGGCAATCACGT 58.418 42.857 0.00 0.00 0.00 4.49
38 39 2.955660 TCTTTTTGGAGGCAATCACGTT 59.044 40.909 0.00 0.00 0.00 3.99
39 40 3.383185 TCTTTTTGGAGGCAATCACGTTT 59.617 39.130 0.00 0.00 0.00 3.60
40 41 2.791383 TTTGGAGGCAATCACGTTTG 57.209 45.000 0.00 0.00 0.00 2.93
41 42 1.686355 TTGGAGGCAATCACGTTTGT 58.314 45.000 2.19 0.00 0.00 2.83
42 43 1.686355 TGGAGGCAATCACGTTTGTT 58.314 45.000 2.19 0.00 0.00 2.83
43 44 2.028130 TGGAGGCAATCACGTTTGTTT 58.972 42.857 2.19 0.00 0.00 2.83
44 45 2.223688 TGGAGGCAATCACGTTTGTTTG 60.224 45.455 2.19 0.00 36.07 2.93
45 46 2.223711 GGAGGCAATCACGTTTGTTTGT 60.224 45.455 2.19 0.00 35.60 2.83
46 47 3.443976 GAGGCAATCACGTTTGTTTGTT 58.556 40.909 2.19 0.00 35.60 2.83
47 48 4.498345 GGAGGCAATCACGTTTGTTTGTTA 60.498 41.667 2.19 0.00 35.60 2.41
48 49 4.606961 AGGCAATCACGTTTGTTTGTTAG 58.393 39.130 2.19 0.00 35.60 2.34
49 50 3.733727 GGCAATCACGTTTGTTTGTTAGG 59.266 43.478 2.19 0.00 35.60 2.69
50 51 3.181575 GCAATCACGTTTGTTTGTTAGGC 59.818 43.478 2.19 0.00 35.60 3.93
51 52 3.636282 ATCACGTTTGTTTGTTAGGCC 57.364 42.857 0.00 0.00 0.00 5.19
52 53 2.366533 TCACGTTTGTTTGTTAGGCCA 58.633 42.857 5.01 0.00 0.00 5.36
53 54 2.356382 TCACGTTTGTTTGTTAGGCCAG 59.644 45.455 5.01 0.00 0.00 4.85
54 55 2.356382 CACGTTTGTTTGTTAGGCCAGA 59.644 45.455 5.01 0.00 0.00 3.86
55 56 2.356695 ACGTTTGTTTGTTAGGCCAGAC 59.643 45.455 5.01 3.06 0.00 3.51
56 57 2.356382 CGTTTGTTTGTTAGGCCAGACA 59.644 45.455 5.01 6.27 0.00 3.41
57 58 3.181495 CGTTTGTTTGTTAGGCCAGACAA 60.181 43.478 17.08 17.08 37.57 3.18
58 59 4.499019 CGTTTGTTTGTTAGGCCAGACAAT 60.499 41.667 20.38 0.00 38.67 2.71
59 60 5.278071 CGTTTGTTTGTTAGGCCAGACAATA 60.278 40.000 20.38 12.33 38.67 1.90
60 61 6.508777 GTTTGTTTGTTAGGCCAGACAATAA 58.491 36.000 20.38 16.17 38.67 1.40
61 62 6.716934 TTGTTTGTTAGGCCAGACAATAAA 57.283 33.333 20.38 15.51 35.32 1.40
62 63 6.716934 TGTTTGTTAGGCCAGACAATAAAA 57.283 33.333 20.38 6.93 35.85 1.52
63 64 7.113658 TGTTTGTTAGGCCAGACAATAAAAA 57.886 32.000 20.38 6.62 35.85 1.94
64 65 7.731054 TGTTTGTTAGGCCAGACAATAAAAAT 58.269 30.769 20.38 0.00 35.85 1.82
65 66 7.870445 TGTTTGTTAGGCCAGACAATAAAAATC 59.130 33.333 20.38 5.01 35.85 2.17
66 67 6.189677 TGTTAGGCCAGACAATAAAAATCG 57.810 37.500 5.01 0.00 0.00 3.34
67 68 5.708230 TGTTAGGCCAGACAATAAAAATCGT 59.292 36.000 5.01 0.00 0.00 3.73
68 69 4.965119 AGGCCAGACAATAAAAATCGTC 57.035 40.909 5.01 0.00 0.00 4.20
69 70 3.694566 AGGCCAGACAATAAAAATCGTCC 59.305 43.478 5.01 0.00 0.00 4.79
70 71 3.442273 GGCCAGACAATAAAAATCGTCCA 59.558 43.478 0.00 0.00 0.00 4.02
71 72 4.082463 GGCCAGACAATAAAAATCGTCCAA 60.082 41.667 0.00 0.00 0.00 3.53
72 73 4.857037 GCCAGACAATAAAAATCGTCCAAC 59.143 41.667 0.00 0.00 0.00 3.77
73 74 5.335661 GCCAGACAATAAAAATCGTCCAACT 60.336 40.000 0.00 0.00 0.00 3.16
74 75 6.128117 GCCAGACAATAAAAATCGTCCAACTA 60.128 38.462 0.00 0.00 0.00 2.24
75 76 7.464358 CCAGACAATAAAAATCGTCCAACTAG 58.536 38.462 0.00 0.00 0.00 2.57
76 77 6.961554 CAGACAATAAAAATCGTCCAACTAGC 59.038 38.462 0.00 0.00 0.00 3.42
77 78 6.653320 AGACAATAAAAATCGTCCAACTAGCA 59.347 34.615 0.00 0.00 0.00 3.49
78 79 7.336931 AGACAATAAAAATCGTCCAACTAGCAT 59.663 33.333 0.00 0.00 0.00 3.79
79 80 7.826690 ACAATAAAAATCGTCCAACTAGCATT 58.173 30.769 0.00 0.00 0.00 3.56
80 81 8.952278 ACAATAAAAATCGTCCAACTAGCATTA 58.048 29.630 0.00 0.00 0.00 1.90
81 82 9.438291 CAATAAAAATCGTCCAACTAGCATTAG 57.562 33.333 0.00 0.00 0.00 1.73
82 83 6.436843 AAAAATCGTCCAACTAGCATTAGG 57.563 37.500 0.00 0.00 0.00 2.69
83 84 5.353394 AAATCGTCCAACTAGCATTAGGA 57.647 39.130 0.00 0.00 0.00 2.94
84 85 4.592485 ATCGTCCAACTAGCATTAGGAG 57.408 45.455 0.00 0.00 0.00 3.69
85 86 2.100916 TCGTCCAACTAGCATTAGGAGC 59.899 50.000 0.00 0.00 0.00 4.70
86 87 2.101582 CGTCCAACTAGCATTAGGAGCT 59.898 50.000 0.00 0.00 45.77 4.09
87 88 3.318275 CGTCCAACTAGCATTAGGAGCTA 59.682 47.826 0.00 0.00 43.25 3.32
125 126 7.424227 TTTCGAGAACTAGCTAGTCTATAGC 57.576 40.000 26.21 11.73 40.67 2.97
133 134 3.926821 GCTAGTCTATAGCTGACACCC 57.073 52.381 0.00 0.00 37.56 4.61
134 135 2.559231 GCTAGTCTATAGCTGACACCCC 59.441 54.545 0.00 0.00 37.56 4.95
135 136 3.752542 GCTAGTCTATAGCTGACACCCCT 60.753 52.174 0.00 0.00 37.56 4.79
136 137 4.506979 GCTAGTCTATAGCTGACACCCCTA 60.507 50.000 0.00 0.00 37.56 3.53
137 138 4.537945 AGTCTATAGCTGACACCCCTAA 57.462 45.455 0.00 0.00 36.94 2.69
138 139 4.880164 AGTCTATAGCTGACACCCCTAAA 58.120 43.478 0.00 0.00 36.94 1.85
139 140 5.278061 AGTCTATAGCTGACACCCCTAAAA 58.722 41.667 0.00 0.00 36.94 1.52
140 141 5.724854 AGTCTATAGCTGACACCCCTAAAAA 59.275 40.000 0.00 0.00 36.94 1.94
170 171 2.667418 CTGACAGGACCAGCCCAG 59.333 66.667 0.00 0.00 37.37 4.45
171 172 3.618780 CTGACAGGACCAGCCCAGC 62.619 68.421 0.00 0.00 37.37 4.85
172 173 4.416738 GACAGGACCAGCCCAGCC 62.417 72.222 0.00 0.00 37.37 4.85
185 186 4.275508 CAGCCCAGCGCCCCATAT 62.276 66.667 2.29 0.00 38.78 1.78
186 187 2.529136 AGCCCAGCGCCCCATATA 60.529 61.111 2.29 0.00 38.78 0.86
187 188 2.153401 AGCCCAGCGCCCCATATAA 61.153 57.895 2.29 0.00 38.78 0.98
188 189 1.228429 GCCCAGCGCCCCATATAAA 60.228 57.895 2.29 0.00 0.00 1.40
189 190 1.524008 GCCCAGCGCCCCATATAAAC 61.524 60.000 2.29 0.00 0.00 2.01
190 191 0.179004 CCCAGCGCCCCATATAAACA 60.179 55.000 2.29 0.00 0.00 2.83
191 192 1.238439 CCAGCGCCCCATATAAACAG 58.762 55.000 2.29 0.00 0.00 3.16
192 193 1.476833 CCAGCGCCCCATATAAACAGT 60.477 52.381 2.29 0.00 0.00 3.55
193 194 2.224426 CCAGCGCCCCATATAAACAGTA 60.224 50.000 2.29 0.00 0.00 2.74
194 195 3.067106 CAGCGCCCCATATAAACAGTAG 58.933 50.000 2.29 0.00 0.00 2.57
195 196 1.804748 GCGCCCCATATAAACAGTAGC 59.195 52.381 0.00 0.00 0.00 3.58
196 197 2.808933 GCGCCCCATATAAACAGTAGCA 60.809 50.000 0.00 0.00 0.00 3.49
197 198 3.067106 CGCCCCATATAAACAGTAGCAG 58.933 50.000 0.00 0.00 0.00 4.24
198 199 2.814336 GCCCCATATAAACAGTAGCAGC 59.186 50.000 0.00 0.00 0.00 5.25
199 200 3.412386 CCCCATATAAACAGTAGCAGCC 58.588 50.000 0.00 0.00 0.00 4.85
200 201 3.073062 CCCCATATAAACAGTAGCAGCCT 59.927 47.826 0.00 0.00 0.00 4.58
201 202 4.286032 CCCCATATAAACAGTAGCAGCCTA 59.714 45.833 0.00 0.00 0.00 3.93
202 203 5.482908 CCCATATAAACAGTAGCAGCCTAG 58.517 45.833 0.00 0.00 0.00 3.02
203 204 4.932200 CCATATAAACAGTAGCAGCCTAGC 59.068 45.833 0.00 0.00 0.00 3.42
204 205 5.511373 CCATATAAACAGTAGCAGCCTAGCA 60.511 44.000 0.00 0.00 36.85 3.49
205 206 2.393271 AAACAGTAGCAGCCTAGCAG 57.607 50.000 0.00 0.00 36.85 4.24
206 207 0.539051 AACAGTAGCAGCCTAGCAGG 59.461 55.000 0.00 0.00 38.80 4.85
215 216 4.865865 CCTAGCAGGCCAACTAGC 57.134 61.111 21.13 10.40 35.55 3.42
223 224 2.044053 GCCAACTAGCCCCATGCA 60.044 61.111 0.00 0.00 44.83 3.96
224 225 2.123428 GCCAACTAGCCCCATGCAG 61.123 63.158 0.00 0.00 44.83 4.41
225 226 1.304282 CCAACTAGCCCCATGCAGT 59.696 57.895 0.00 0.00 44.83 4.40
226 227 0.546122 CCAACTAGCCCCATGCAGTA 59.454 55.000 0.00 0.00 44.83 2.74
227 228 1.143684 CCAACTAGCCCCATGCAGTAT 59.856 52.381 0.00 0.00 44.83 2.12
228 229 2.224606 CAACTAGCCCCATGCAGTATG 58.775 52.381 0.00 0.00 44.83 2.39
238 239 1.935873 CATGCAGTATGGTCTGTTCGG 59.064 52.381 0.00 0.00 37.70 4.30
239 240 0.973632 TGCAGTATGGTCTGTTCGGT 59.026 50.000 0.00 0.00 37.70 4.69
240 241 1.067142 TGCAGTATGGTCTGTTCGGTC 60.067 52.381 0.00 0.00 37.70 4.79
241 242 1.739371 GCAGTATGGTCTGTTCGGTCC 60.739 57.143 0.00 0.00 37.70 4.46
242 243 1.548719 CAGTATGGTCTGTTCGGTCCA 59.451 52.381 0.70 0.70 0.00 4.02
243 244 1.825474 AGTATGGTCTGTTCGGTCCAG 59.175 52.381 4.27 0.00 33.33 3.86
244 245 1.822990 GTATGGTCTGTTCGGTCCAGA 59.177 52.381 4.27 0.00 36.63 3.86
245 246 1.348064 ATGGTCTGTTCGGTCCAGAA 58.652 50.000 4.27 0.00 40.44 3.02
254 255 4.373771 GGTCCAGAACCGACAACC 57.626 61.111 0.00 0.00 38.58 3.77
255 256 1.666872 GGTCCAGAACCGACAACCG 60.667 63.158 0.00 0.00 38.58 4.44
256 257 1.364901 GTCCAGAACCGACAACCGA 59.635 57.895 0.00 0.00 41.76 4.69
257 258 0.249573 GTCCAGAACCGACAACCGAA 60.250 55.000 0.00 0.00 41.76 4.30
258 259 0.249573 TCCAGAACCGACAACCGAAC 60.250 55.000 0.00 0.00 41.76 3.95
259 260 1.226030 CCAGAACCGACAACCGAACC 61.226 60.000 0.00 0.00 41.76 3.62
260 261 1.300388 AGAACCGACAACCGAACCG 60.300 57.895 0.00 0.00 41.76 4.44
261 262 1.300080 GAACCGACAACCGAACCGA 60.300 57.895 0.00 0.00 41.76 4.69
262 263 0.668401 GAACCGACAACCGAACCGAT 60.668 55.000 0.00 0.00 41.76 4.18
263 264 0.668401 AACCGACAACCGAACCGATC 60.668 55.000 0.00 0.00 41.76 3.69
271 272 4.303853 CGAACCGATCGTGCTAGG 57.696 61.111 15.09 0.00 46.52 3.02
272 273 1.299165 CGAACCGATCGTGCTAGGG 60.299 63.158 15.09 0.00 46.52 3.53
273 274 1.721664 CGAACCGATCGTGCTAGGGA 61.722 60.000 15.09 0.00 46.52 4.20
274 275 0.248949 GAACCGATCGTGCTAGGGAC 60.249 60.000 15.09 0.00 0.00 4.46
275 276 1.673808 AACCGATCGTGCTAGGGACC 61.674 60.000 15.09 0.00 0.00 4.46
276 277 2.331805 CGATCGTGCTAGGGACCG 59.668 66.667 7.03 0.00 0.00 4.79
277 278 2.184830 CGATCGTGCTAGGGACCGA 61.185 63.158 7.03 0.00 0.00 4.69
278 279 1.655329 GATCGTGCTAGGGACCGAG 59.345 63.158 0.00 0.00 32.26 4.63
279 280 2.409241 GATCGTGCTAGGGACCGAGC 62.409 65.000 15.41 15.41 43.42 5.03
280 281 2.912987 ATCGTGCTAGGGACCGAGCT 62.913 60.000 21.31 1.65 43.49 4.09
281 282 2.809010 GTGCTAGGGACCGAGCTC 59.191 66.667 21.31 15.34 43.49 4.09
282 283 1.755008 GTGCTAGGGACCGAGCTCT 60.755 63.158 21.31 0.00 43.49 4.09
283 284 1.454111 TGCTAGGGACCGAGCTCTC 60.454 63.158 21.31 3.05 43.49 3.20
295 296 1.929230 GAGCTCTCGGTTTCCTTAGC 58.071 55.000 6.43 0.00 0.00 3.09
296 297 1.478916 GAGCTCTCGGTTTCCTTAGCT 59.521 52.381 6.43 0.00 42.70 3.32
297 298 2.688958 GAGCTCTCGGTTTCCTTAGCTA 59.311 50.000 6.43 0.00 40.24 3.32
298 299 2.691011 AGCTCTCGGTTTCCTTAGCTAG 59.309 50.000 0.00 0.00 38.48 3.42
299 300 2.800273 GCTCTCGGTTTCCTTAGCTAGC 60.800 54.545 6.62 6.62 0.00 3.42
300 301 2.427453 CTCTCGGTTTCCTTAGCTAGCA 59.573 50.000 18.83 0.00 0.00 3.49
301 302 2.427453 TCTCGGTTTCCTTAGCTAGCAG 59.573 50.000 18.83 6.27 0.00 4.24
302 303 2.427453 CTCGGTTTCCTTAGCTAGCAGA 59.573 50.000 18.83 5.06 0.00 4.26
303 304 2.427453 TCGGTTTCCTTAGCTAGCAGAG 59.573 50.000 18.83 13.51 0.00 3.35
304 305 2.427453 CGGTTTCCTTAGCTAGCAGAGA 59.573 50.000 18.83 5.06 0.00 3.10
305 306 3.735514 CGGTTTCCTTAGCTAGCAGAGAC 60.736 52.174 18.83 12.31 0.00 3.36
306 307 3.431068 GGTTTCCTTAGCTAGCAGAGACC 60.431 52.174 18.83 16.96 0.00 3.85
307 308 1.681538 TCCTTAGCTAGCAGAGACCG 58.318 55.000 18.83 2.09 0.00 4.79
308 309 1.212195 TCCTTAGCTAGCAGAGACCGA 59.788 52.381 18.83 4.37 0.00 4.69
309 310 2.158593 TCCTTAGCTAGCAGAGACCGAT 60.159 50.000 18.83 0.00 0.00 4.18
310 311 2.227865 CCTTAGCTAGCAGAGACCGATC 59.772 54.545 18.83 0.00 0.00 3.69
311 312 1.514003 TAGCTAGCAGAGACCGATCG 58.486 55.000 18.83 8.51 0.00 3.69
312 313 1.169661 AGCTAGCAGAGACCGATCGG 61.170 60.000 32.20 32.20 42.03 4.18
324 325 2.596904 CCGATCGGTCCATGTTTACT 57.403 50.000 26.35 0.00 0.00 2.24
325 326 2.201732 CCGATCGGTCCATGTTTACTG 58.798 52.381 26.35 0.00 0.00 2.74
326 327 2.159156 CCGATCGGTCCATGTTTACTGA 60.159 50.000 26.35 4.62 35.55 3.41
327 328 3.116300 CGATCGGTCCATGTTTACTGAG 58.884 50.000 7.38 0.00 34.61 3.35
328 329 3.458189 GATCGGTCCATGTTTACTGAGG 58.542 50.000 7.44 0.00 34.61 3.86
329 330 2.531771 TCGGTCCATGTTTACTGAGGA 58.468 47.619 0.00 0.00 0.00 3.71
330 331 2.232941 TCGGTCCATGTTTACTGAGGAC 59.767 50.000 0.00 0.00 46.16 3.85
332 333 2.618053 GTCCATGTTTACTGAGGACCG 58.382 52.381 0.00 0.00 42.21 4.79
333 334 2.232941 GTCCATGTTTACTGAGGACCGA 59.767 50.000 0.00 0.00 42.21 4.69
334 335 2.901192 TCCATGTTTACTGAGGACCGAA 59.099 45.455 0.00 0.00 0.00 4.30
335 336 3.325425 TCCATGTTTACTGAGGACCGAAA 59.675 43.478 0.00 0.00 0.00 3.46
336 337 4.069304 CCATGTTTACTGAGGACCGAAAA 58.931 43.478 0.00 0.00 0.00 2.29
337 338 4.700213 CCATGTTTACTGAGGACCGAAAAT 59.300 41.667 0.00 0.00 0.00 1.82
338 339 5.183140 CCATGTTTACTGAGGACCGAAAATT 59.817 40.000 0.00 0.00 0.00 1.82
339 340 6.373216 CCATGTTTACTGAGGACCGAAAATTA 59.627 38.462 0.00 0.00 0.00 1.40
340 341 7.414098 CCATGTTTACTGAGGACCGAAAATTAG 60.414 40.741 0.00 0.00 0.00 1.73
341 342 6.761312 TGTTTACTGAGGACCGAAAATTAGA 58.239 36.000 0.00 0.00 0.00 2.10
342 343 7.218614 TGTTTACTGAGGACCGAAAATTAGAA 58.781 34.615 0.00 0.00 0.00 2.10
343 344 7.716123 TGTTTACTGAGGACCGAAAATTAGAAA 59.284 33.333 0.00 0.00 0.00 2.52
344 345 7.900782 TTACTGAGGACCGAAAATTAGAAAG 57.099 36.000 0.00 0.00 0.00 2.62
345 346 4.695928 ACTGAGGACCGAAAATTAGAAAGC 59.304 41.667 0.00 0.00 0.00 3.51
346 347 4.647611 TGAGGACCGAAAATTAGAAAGCA 58.352 39.130 0.00 0.00 0.00 3.91
347 348 4.454504 TGAGGACCGAAAATTAGAAAGCAC 59.545 41.667 0.00 0.00 0.00 4.40
348 349 3.756963 AGGACCGAAAATTAGAAAGCACC 59.243 43.478 0.00 0.00 0.00 5.01
349 350 3.425758 GGACCGAAAATTAGAAAGCACCG 60.426 47.826 0.00 0.00 0.00 4.94
350 351 3.404899 ACCGAAAATTAGAAAGCACCGA 58.595 40.909 0.00 0.00 0.00 4.69
351 352 3.816523 ACCGAAAATTAGAAAGCACCGAA 59.183 39.130 0.00 0.00 0.00 4.30
352 353 4.083484 ACCGAAAATTAGAAAGCACCGAAG 60.083 41.667 0.00 0.00 0.00 3.79
353 354 3.846335 CGAAAATTAGAAAGCACCGAAGC 59.154 43.478 0.00 0.00 0.00 3.86
354 355 4.612712 CGAAAATTAGAAAGCACCGAAGCA 60.613 41.667 2.02 0.00 36.85 3.91
355 356 3.831715 AATTAGAAAGCACCGAAGCAC 57.168 42.857 2.02 0.00 36.85 4.40
356 357 1.519408 TTAGAAAGCACCGAAGCACC 58.481 50.000 2.02 0.00 36.85 5.01
357 358 0.669318 TAGAAAGCACCGAAGCACCG 60.669 55.000 2.02 0.00 36.85 4.94
358 359 1.959226 GAAAGCACCGAAGCACCGA 60.959 57.895 2.02 0.00 36.85 4.69
359 360 1.503818 GAAAGCACCGAAGCACCGAA 61.504 55.000 2.02 0.00 36.85 4.30
360 361 1.782028 AAAGCACCGAAGCACCGAAC 61.782 55.000 2.02 0.00 36.85 3.95
361 362 3.723348 GCACCGAAGCACCGAACC 61.723 66.667 0.00 0.00 0.00 3.62
362 363 3.411351 CACCGAAGCACCGAACCG 61.411 66.667 0.00 0.00 0.00 4.44
363 364 3.608662 ACCGAAGCACCGAACCGA 61.609 61.111 0.00 0.00 0.00 4.69
364 365 2.356553 CCGAAGCACCGAACCGAA 60.357 61.111 0.00 0.00 0.00 4.30
365 366 2.664436 CCGAAGCACCGAACCGAAC 61.664 63.158 0.00 0.00 0.00 3.95
366 367 2.851104 GAAGCACCGAACCGAACG 59.149 61.111 0.00 0.00 0.00 3.95
385 386 3.941035 TTCGAGGAAACCGAACGC 58.059 55.556 0.00 0.00 40.56 4.84
386 387 1.364901 TTCGAGGAAACCGAACGCT 59.635 52.632 0.00 0.00 40.56 5.07
387 388 0.665369 TTCGAGGAAACCGAACGCTC 60.665 55.000 0.00 0.00 40.56 5.03
388 389 1.372499 CGAGGAAACCGAACGCTCA 60.372 57.895 0.00 0.00 0.00 4.26
389 390 1.615107 CGAGGAAACCGAACGCTCAC 61.615 60.000 0.00 0.00 0.00 3.51
390 391 1.289800 GAGGAAACCGAACGCTCACC 61.290 60.000 0.00 0.00 0.00 4.02
391 392 2.322830 GGAAACCGAACGCTCACCC 61.323 63.158 0.00 0.00 0.00 4.61
392 393 2.281276 AAACCGAACGCTCACCCC 60.281 61.111 0.00 0.00 0.00 4.95
393 394 2.726822 GAAACCGAACGCTCACCCCT 62.727 60.000 0.00 0.00 0.00 4.79
455 456 1.135046 CGGAGCGATGCAATCTACTG 58.865 55.000 0.00 0.00 42.58 2.74
468 469 0.323302 TCTACTGTTCCAATGGCGCA 59.677 50.000 10.83 0.00 0.00 6.09
472 473 0.664166 CTGTTCCAATGGCGCACAAC 60.664 55.000 10.83 2.60 0.00 3.32
477 478 1.442520 CAATGGCGCACAACCGAAG 60.443 57.895 10.83 0.00 0.00 3.79
499 500 0.388649 AATCGCCTCGCCGATCATAC 60.389 55.000 6.04 0.00 46.29 2.39
673 739 4.566545 TTTTATGCGCTACATGATTGGG 57.433 40.909 9.73 0.00 40.06 4.12
680 746 2.157738 GCTACATGATTGGGCCAGATC 58.842 52.381 6.23 13.30 0.00 2.75
700 766 2.047274 CCCAAAGCTTCGAGCCGA 60.047 61.111 0.00 0.00 43.77 5.54
740 807 2.242047 TTTTCATGTCGACCCAACGA 57.758 45.000 14.12 0.00 40.00 3.85
741 808 2.465860 TTTCATGTCGACCCAACGAT 57.534 45.000 14.12 0.00 43.93 3.73
742 809 3.596310 TTTCATGTCGACCCAACGATA 57.404 42.857 14.12 0.00 43.93 2.92
755 822 7.498900 TCGACCCAACGATATAAAGTACTAGAA 59.501 37.037 0.00 0.00 37.37 2.10
767 834 6.775594 AAAGTACTAGAAATTCAATGGGGC 57.224 37.500 0.00 0.00 0.00 5.80
769 836 3.032265 ACTAGAAATTCAATGGGGCCC 57.968 47.619 18.17 18.17 0.00 5.80
771 838 2.340721 AGAAATTCAATGGGGCCCAA 57.659 45.000 32.57 14.95 36.95 4.12
772 839 2.849537 AGAAATTCAATGGGGCCCAAT 58.150 42.857 32.57 20.78 36.95 3.16
773 840 2.773661 AGAAATTCAATGGGGCCCAATC 59.226 45.455 32.57 17.78 36.95 2.67
775 842 0.643822 ATTCAATGGGGCCCAATCCT 59.356 50.000 32.57 10.67 36.95 3.24
777 844 1.313889 TCAATGGGGCCCAATCCTAA 58.686 50.000 32.57 9.39 36.95 2.69
778 845 1.648568 TCAATGGGGCCCAATCCTAAA 59.351 47.619 32.57 2.58 36.95 1.85
779 846 2.249743 TCAATGGGGCCCAATCCTAAAT 59.750 45.455 32.57 7.42 36.95 1.40
780 847 2.369532 CAATGGGGCCCAATCCTAAATG 59.630 50.000 32.57 13.99 36.95 2.32
783 850 2.249743 TGGGGCCCAATCCTAAATGATT 59.750 45.455 26.55 0.00 35.36 2.57
784 851 3.311252 TGGGGCCCAATCCTAAATGATTT 60.311 43.478 26.55 0.00 32.71 2.17
785 852 3.071457 GGGGCCCAATCCTAAATGATTTG 59.929 47.826 26.86 0.00 32.71 2.32
786 853 3.711190 GGGCCCAATCCTAAATGATTTGT 59.289 43.478 19.95 0.00 32.71 2.83
787 854 4.443315 GGGCCCAATCCTAAATGATTTGTG 60.443 45.833 19.95 0.00 32.71 3.33
788 855 4.122046 GCCCAATCCTAAATGATTTGTGC 58.878 43.478 0.00 0.00 32.71 4.57
789 856 4.141869 GCCCAATCCTAAATGATTTGTGCT 60.142 41.667 0.00 0.00 32.71 4.40
790 857 5.627503 GCCCAATCCTAAATGATTTGTGCTT 60.628 40.000 0.00 0.00 32.71 3.91
791 858 6.408869 CCCAATCCTAAATGATTTGTGCTTT 58.591 36.000 0.00 0.00 32.71 3.51
792 859 6.880529 CCCAATCCTAAATGATTTGTGCTTTT 59.119 34.615 0.00 0.00 32.71 2.27
793 860 8.040132 CCCAATCCTAAATGATTTGTGCTTTTA 58.960 33.333 0.00 0.00 32.71 1.52
794 861 9.603921 CCAATCCTAAATGATTTGTGCTTTTAT 57.396 29.630 0.00 0.00 32.71 1.40
798 865 9.693739 TCCTAAATGATTTGTGCTTTTATAGGA 57.306 29.630 0.00 0.00 0.00 2.94
799 866 9.736023 CCTAAATGATTTGTGCTTTTATAGGAC 57.264 33.333 0.00 0.00 44.78 3.85
811 878 6.183360 TGCTTTTATAGGACAAAAATAGCCCG 60.183 38.462 0.00 0.00 0.00 6.13
814 881 0.331616 AGGACAAAAATAGCCCGGCT 59.668 50.000 18.05 18.05 43.41 5.52
840 907 0.035725 GGCCCGTTAACTAACTGCCT 60.036 55.000 16.64 0.00 42.99 4.75
846 913 3.067180 CCGTTAACTAACTGCCTCCGATA 59.933 47.826 3.71 0.00 34.12 2.92
914 981 0.249911 GCCTTCCACTTGTCTCACGT 60.250 55.000 0.00 0.00 0.00 4.49
915 982 1.784525 CCTTCCACTTGTCTCACGTC 58.215 55.000 0.00 0.00 0.00 4.34
921 988 1.444553 CTTGTCTCACGTCCTCCGC 60.445 63.158 0.00 0.00 41.42 5.54
1118 1185 2.184322 CGTAGCACCCATCACGCT 59.816 61.111 0.00 0.00 39.80 5.07
1119 1186 2.167219 CGTAGCACCCATCACGCTG 61.167 63.158 0.00 0.00 37.20 5.18
1174 1241 3.613702 GCGTCGCGATTGGTACCG 61.614 66.667 14.06 10.68 0.00 4.02
1191 1258 4.835927 GGACTAGCATCCGTGGTG 57.164 61.111 0.00 0.00 37.28 4.17
1260 1327 0.654683 CTGCAAGTAGGAATCGCTGC 59.345 55.000 0.00 0.00 0.00 5.25
1274 1341 1.870055 CGCTGCCTGAATGTTTGCCT 61.870 55.000 0.00 0.00 0.00 4.75
1337 1408 1.137513 GAGTGTGTGGCGAGTGTTAC 58.862 55.000 0.00 0.00 0.00 2.50
1360 1431 5.290158 ACGTTGCATAGGTTCGTGTAAATAG 59.710 40.000 0.00 0.00 33.55 1.73
1363 1434 5.364778 TGCATAGGTTCGTGTAAATAGCAT 58.635 37.500 0.00 0.00 0.00 3.79
1366 1437 3.541632 AGGTTCGTGTAAATAGCATGGG 58.458 45.455 0.00 0.00 0.00 4.00
1371 1442 3.199071 TCGTGTAAATAGCATGGGAAGGT 59.801 43.478 0.00 0.00 0.00 3.50
1378 1458 2.725221 AGCATGGGAAGGTTCATCTC 57.275 50.000 0.00 0.00 0.00 2.75
1380 1460 2.092538 AGCATGGGAAGGTTCATCTCTG 60.093 50.000 0.00 0.00 0.00 3.35
1381 1461 2.295885 CATGGGAAGGTTCATCTCTGC 58.704 52.381 0.00 0.00 0.00 4.26
1382 1462 0.250234 TGGGAAGGTTCATCTCTGCG 59.750 55.000 0.00 0.00 0.00 5.18
1383 1463 0.462759 GGGAAGGTTCATCTCTGCGG 60.463 60.000 0.00 0.00 0.00 5.69
1385 1465 1.339151 GGAAGGTTCATCTCTGCGGTT 60.339 52.381 0.00 0.00 0.00 4.44
1386 1466 1.734465 GAAGGTTCATCTCTGCGGTTG 59.266 52.381 0.00 0.00 0.00 3.77
1388 1468 1.072331 AGGTTCATCTCTGCGGTTGTT 59.928 47.619 0.00 0.00 0.00 2.83
1389 1469 1.880027 GGTTCATCTCTGCGGTTGTTT 59.120 47.619 0.00 0.00 0.00 2.83
1390 1470 2.350772 GGTTCATCTCTGCGGTTGTTTG 60.351 50.000 0.00 0.00 0.00 2.93
1391 1471 0.874390 TCATCTCTGCGGTTGTTTGC 59.126 50.000 0.00 0.00 0.00 3.68
1392 1472 0.592637 CATCTCTGCGGTTGTTTGCA 59.407 50.000 0.00 0.00 39.13 4.08
1393 1473 1.200716 CATCTCTGCGGTTGTTTGCAT 59.799 47.619 0.00 0.00 40.89 3.96
1394 1474 0.592637 TCTCTGCGGTTGTTTGCATG 59.407 50.000 0.00 0.00 40.89 4.06
1395 1475 0.311790 CTCTGCGGTTGTTTGCATGT 59.688 50.000 0.00 0.00 40.89 3.21
1414 1494 5.584251 GCATGTTTGGTTTATTATTGGTGGG 59.416 40.000 0.00 0.00 0.00 4.61
1422 1502 6.379703 TGGTTTATTATTGGTGGGATGAGTTG 59.620 38.462 0.00 0.00 0.00 3.16
1427 1507 1.444933 TGGTGGGATGAGTTGGTTCT 58.555 50.000 0.00 0.00 0.00 3.01
1434 1514 4.721274 TGGGATGAGTTGGTTCTGATATGA 59.279 41.667 0.00 0.00 0.00 2.15
1436 1516 5.059833 GGATGAGTTGGTTCTGATATGACC 58.940 45.833 0.00 0.00 0.00 4.02
1437 1517 5.396772 GGATGAGTTGGTTCTGATATGACCA 60.397 44.000 0.00 0.00 0.00 4.02
1442 1522 5.013079 AGTTGGTTCTGATATGACCAAGTGA 59.987 40.000 15.22 0.00 41.12 3.41
1443 1523 5.089970 TGGTTCTGATATGACCAAGTGAG 57.910 43.478 0.00 0.00 0.00 3.51
1448 1528 7.439655 GGTTCTGATATGACCAAGTGAGATTAC 59.560 40.741 0.00 0.00 0.00 1.89
1460 1548 6.016527 CCAAGTGAGATTACATGATTCATGGG 60.017 42.308 26.14 12.01 45.16 4.00
1464 1552 6.712095 GTGAGATTACATGATTCATGGGCTTA 59.288 38.462 26.14 13.32 45.16 3.09
1468 1556 4.595762 ACATGATTCATGGGCTTAATGC 57.404 40.909 26.14 0.00 45.16 3.56
1481 1581 4.363138 GGCTTAATGCTATTGCTTTGTCC 58.637 43.478 9.88 5.28 42.39 4.02
1492 1592 3.540314 TGCTTTGTCCTTTGCAAATGT 57.460 38.095 13.23 0.00 35.60 2.71
1501 1601 4.990426 GTCCTTTGCAAATGTATGCTTTGT 59.010 37.500 13.23 0.00 46.54 2.83
1518 1618 6.953101 TGCTTTGTATCCAGTACCATTCTAA 58.047 36.000 0.00 0.00 32.03 2.10
1526 1626 9.046296 GTATCCAGTACCATTCTAATTCTTGTG 57.954 37.037 0.00 0.00 0.00 3.33
1529 1629 7.606456 TCCAGTACCATTCTAATTCTTGTGTTC 59.394 37.037 0.00 0.00 0.00 3.18
1541 1641 4.742438 TCTTGTGTTCGGTTTCATTAGC 57.258 40.909 0.00 0.00 0.00 3.09
1543 1643 5.543714 TCTTGTGTTCGGTTTCATTAGCTA 58.456 37.500 0.00 0.00 0.00 3.32
1545 1645 7.324935 TCTTGTGTTCGGTTTCATTAGCTATA 58.675 34.615 0.00 0.00 0.00 1.31
1570 1670 2.710377 TGTTTCATGATGCGCCTAGTT 58.290 42.857 4.18 0.00 0.00 2.24
1579 1679 5.208463 TGATGCGCCTAGTTGAATGTATA 57.792 39.130 4.18 0.00 0.00 1.47
1588 1688 7.117812 CGCCTAGTTGAATGTATAATTCGGAAT 59.882 37.037 0.00 0.00 0.00 3.01
1589 1689 8.230486 GCCTAGTTGAATGTATAATTCGGAATG 58.770 37.037 3.59 0.00 0.00 2.67
1611 1711 3.817084 GGCTTGTTAAAGTCCCTTTACGT 59.183 43.478 0.00 0.00 35.94 3.57
1745 1845 3.186909 CTGACCGATGATCGTTTTAGCA 58.813 45.455 14.27 1.95 38.40 3.49
1780 1880 6.757010 GCCATAACCTTGGATGTAGATATACG 59.243 42.308 0.00 0.00 39.25 3.06
2164 2264 6.212589 TGAAACATCTCCAGTATGTGTTCCTA 59.787 38.462 0.00 0.00 37.62 2.94
2567 2667 7.615757 AGGTATTTCAGCTTAATATTATGCCCC 59.384 37.037 22.89 14.10 35.20 5.80
2631 2731 6.617105 GCTGAATGCAAACTTATTGACTTTGC 60.617 38.462 7.27 7.27 46.56 3.68
2682 2782 4.695455 CAGAAGCTTCAAGTAATCCGGAAA 59.305 41.667 27.57 0.00 0.00 3.13
2777 2877 8.171164 AGGCTTCAATTAGCAGATTAAATACC 57.829 34.615 2.76 0.00 43.02 2.73
3383 3493 1.000274 GGAAAAGGCTTGCATTCACGT 60.000 47.619 0.00 0.00 0.00 4.49
3425 3535 6.654161 TGATGAAAATTATGTTGCCAAAAGGG 59.346 34.615 0.00 0.00 40.85 3.95
3442 3552 7.205297 CCAAAAGGGCATTATTCAGTTATCTG 58.795 38.462 0.00 0.00 42.54 2.90
3457 3567 8.250143 TCAGTTATCTGGCTGATTGATAGTTA 57.750 34.615 12.29 0.00 41.59 2.24
3689 3800 4.392138 GTGCCTGAACTGTGGTATACTTTC 59.608 45.833 2.25 0.00 0.00 2.62
3891 4006 2.586425 ACTGTTACTGTGCATGCCTTT 58.414 42.857 16.68 0.00 0.00 3.11
3894 4009 2.553602 TGTTACTGTGCATGCCTTTGAG 59.446 45.455 16.68 6.13 0.00 3.02
3897 4012 0.609957 CTGTGCATGCCTTTGAGGGA 60.610 55.000 16.68 0.00 41.08 4.20
4027 4173 3.351740 ACTCTGACGACTGATGACTGAT 58.648 45.455 0.00 0.00 0.00 2.90
4196 4342 7.869429 CACTTAATTGCCTGAAACTTCATCTTT 59.131 33.333 0.00 0.00 36.46 2.52
4227 4373 2.104170 GTTGACCAAACCCAACTGGAA 58.896 47.619 0.00 0.00 39.47 3.53
4241 4387 6.337671 CCAACTGGAACGTGCTAAAGCATT 62.338 45.833 8.09 0.00 45.60 3.56
4284 4430 5.520748 AGAACCTGGAATCAAAGGTATGT 57.479 39.130 0.00 0.00 46.29 2.29
4406 4552 4.846779 TTGGTGAAAGGTGCACTATTTC 57.153 40.909 27.10 27.10 36.53 2.17
4467 4613 3.686016 TGGTTCTATTCCTTGCAAGGTC 58.314 45.455 37.97 21.52 46.54 3.85
4489 4635 3.970610 CGAGAAAAACACATTCTGCACTG 59.029 43.478 0.00 0.00 37.26 3.66
4504 4650 3.814625 TGCACTGGACACATTGTAGAAA 58.185 40.909 0.00 0.00 30.61 2.52
4537 4683 5.724370 TCAGGGATGGTGATGTCTACTTTAA 59.276 40.000 0.00 0.00 0.00 1.52
4539 4685 6.540189 CAGGGATGGTGATGTCTACTTTAAAG 59.460 42.308 13.76 13.76 0.00 1.85
4758 5593 6.100004 TCTAGAGGAAAGCATGTTTCTTACG 58.900 40.000 15.60 0.00 0.00 3.18
4904 5739 1.398390 GCCGCCACAGTATTCTTGAAG 59.602 52.381 0.00 0.00 0.00 3.02
4973 5809 3.906720 ACATAATGGACAAGCTACCGT 57.093 42.857 0.00 0.00 0.00 4.83
5014 5850 3.470709 ACAATATCATGGACTCGCAAGG 58.529 45.455 0.00 0.00 38.47 3.61
5169 6040 3.637769 TGTAAAACCTTGCAGGAAACCT 58.362 40.909 8.91 0.00 37.67 3.50
5198 6069 2.751806 AGCTTCTTAAGGCTGTTGATGC 59.248 45.455 1.85 11.19 37.41 3.91
5274 6145 4.283337 TGACAATGGCATCTCATGGAAAT 58.717 39.130 0.00 0.00 0.00 2.17
5292 6163 0.249398 ATGGTGAGCTCCGTGTTACC 59.751 55.000 12.15 11.41 0.00 2.85
5336 6208 4.058124 TGTGTATGAGTGCACTGTTTCTC 58.942 43.478 27.27 9.51 41.01 2.87
5481 6359 4.277476 ACCTGGTCACATTTTTCACAAGA 58.723 39.130 0.00 0.00 0.00 3.02
5529 6407 6.326843 GGTTATTAACTCCTCTACTGTGGGAT 59.673 42.308 6.52 0.00 0.00 3.85
5579 6458 3.190327 CGCAAAACATGTATCCACCTGAA 59.810 43.478 0.00 0.00 0.00 3.02
5582 6461 6.165577 GCAAAACATGTATCCACCTGAATTT 58.834 36.000 0.00 0.00 0.00 1.82
5584 6463 6.916360 AAACATGTATCCACCTGAATTTGT 57.084 33.333 0.00 0.00 0.00 2.83
5601 6483 5.850557 ATTTGTTGGTGTGATGTTCTCAA 57.149 34.783 0.00 0.00 35.07 3.02
5634 6516 9.513906 TGTTCCTGTAAATTCAGTGAAATCATA 57.486 29.630 10.14 0.00 34.02 2.15
5651 6533 3.335748 TCATATATGGGTGGCCCTCTTT 58.664 45.455 12.78 0.00 45.70 2.52
5653 6535 1.607225 ATATGGGTGGCCCTCTTTCA 58.393 50.000 0.00 0.00 45.70 2.69
5716 6600 5.441709 TTTGGGTTAAAGTCGATGAAACC 57.558 39.130 11.39 11.39 39.09 3.27
5722 6662 5.333875 GGTTAAAGTCGATGAAACCAGTGTC 60.334 44.000 13.74 0.00 39.51 3.67
5730 6670 2.951475 GAAACCAGTGTCGGGGCACA 62.951 60.000 6.16 0.00 41.52 4.57
5803 6745 0.108207 TTTTTGCATGCAACAGGGGG 59.892 50.000 31.99 0.00 35.46 5.40
5835 6777 3.498777 GTCCTGAGTTTTGACTGGTAAGC 59.501 47.826 0.00 0.00 0.00 3.09
5882 7360 6.183360 GGTTTTAACTTGCTTGGTTTTCTTGG 60.183 38.462 0.00 0.00 0.00 3.61
5899 7377 2.816204 TGGTTGTGTCGACGGAAATA 57.184 45.000 11.62 0.00 0.00 1.40
5901 7379 3.061322 TGGTTGTGTCGACGGAAATAAG 58.939 45.455 11.62 0.00 0.00 1.73
5902 7380 2.159747 GGTTGTGTCGACGGAAATAAGC 60.160 50.000 11.62 3.96 0.00 3.09
5903 7381 2.442212 TGTGTCGACGGAAATAAGCA 57.558 45.000 11.62 0.00 0.00 3.91
5904 7382 2.063266 TGTGTCGACGGAAATAAGCAC 58.937 47.619 11.62 0.00 0.00 4.40
5905 7383 2.063266 GTGTCGACGGAAATAAGCACA 58.937 47.619 11.62 0.00 0.00 4.57
5906 7384 2.063266 TGTCGACGGAAATAAGCACAC 58.937 47.619 11.62 0.00 0.00 3.82
5907 7385 1.392510 GTCGACGGAAATAAGCACACC 59.607 52.381 0.00 0.00 0.00 4.16
5921 7534 0.859232 CACACCGAAGAAACCACTCG 59.141 55.000 0.00 0.00 0.00 4.18
5926 7539 1.337447 CCGAAGAAACCACTCGGCTTA 60.337 52.381 0.00 0.00 37.16 3.09
5936 7549 1.000283 CACTCGGCTTATAGGAGCAGG 60.000 57.143 0.00 0.00 44.49 4.85
5938 7551 1.689273 CTCGGCTTATAGGAGCAGGTT 59.311 52.381 0.00 0.00 44.49 3.50
5971 7588 3.619038 GCAGTTCCGAGATTTGTTCTAGG 59.381 47.826 0.00 0.00 45.87 3.02
5975 7592 3.437213 TCCGAGATTTGTTCTAGGGTGA 58.563 45.455 2.54 0.00 44.90 4.02
5978 7595 4.322801 CCGAGATTTGTTCTAGGGTGAACT 60.323 45.833 8.52 0.00 44.63 3.01
5983 7600 2.972348 TGTTCTAGGGTGAACTGGAGT 58.028 47.619 8.52 0.00 44.63 3.85
6047 7664 4.436998 GAGGGGGTGTGCGTCGAG 62.437 72.222 0.00 0.00 0.00 4.04
6054 7671 0.878961 GGTGTGCGTCGAGGAAAACT 60.879 55.000 9.75 0.00 0.00 2.66
6055 7672 0.232303 GTGTGCGTCGAGGAAAACTG 59.768 55.000 9.75 0.00 0.00 3.16
6083 7700 1.985116 GGCTCCCGTCCTTGACTCT 60.985 63.158 0.00 0.00 0.00 3.24
6092 7709 1.004918 CCTTGACTCTTCCGGCGTT 60.005 57.895 6.01 0.00 0.00 4.84
6105 7722 1.291184 CGGCGTTTCAGTGCAGATGA 61.291 55.000 0.00 0.00 0.00 2.92
6213 8001 2.740826 CCGCATCGTGGTTTCCGT 60.741 61.111 0.00 0.00 0.00 4.69
6216 8004 0.734942 CGCATCGTGGTTTCCGTACT 60.735 55.000 0.00 0.00 0.00 2.73
6218 8006 1.636988 CATCGTGGTTTCCGTACTCC 58.363 55.000 0.00 0.00 0.00 3.85
6243 8073 0.108585 TCTGCTTTCTGTGGTGGACC 59.891 55.000 0.00 0.00 0.00 4.46
6244 8074 0.890996 CTGCTTTCTGTGGTGGACCC 60.891 60.000 0.00 0.00 34.29 4.46
6286 8116 2.442272 AGCAGGGTATCGCCGACT 60.442 61.111 0.00 0.00 38.44 4.18
6291 8121 1.611977 CAGGGTATCGCCGACTGATAA 59.388 52.381 0.00 0.00 38.44 1.75
6301 8273 1.470979 CCGACTGATAACCAAGGGACG 60.471 57.143 0.00 0.00 0.00 4.79
6320 8305 1.724654 CGTTGTTGTATTCGCACCAGC 60.725 52.381 0.00 0.00 37.42 4.85
6395 8382 4.899239 GACTCATGGAGGCGGCCG 62.899 72.222 24.05 24.05 33.35 6.13
6409 8396 3.799755 GCCGGCCATGTTGTCGAC 61.800 66.667 18.11 9.11 0.00 4.20
6410 8397 3.487202 CCGGCCATGTTGTCGACG 61.487 66.667 11.62 0.00 0.00 5.12
6411 8398 2.736995 CGGCCATGTTGTCGACGT 60.737 61.111 11.62 0.00 0.00 4.34
6412 8399 2.726691 CGGCCATGTTGTCGACGTC 61.727 63.158 11.62 5.18 0.00 4.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 6.208204 CCTCCAAAAAGAAACATGAGAGACAT 59.792 38.462 0.00 0.00 40.17 3.06
4 5 5.532406 CCTCCAAAAAGAAACATGAGAGACA 59.468 40.000 0.00 0.00 0.00 3.41
5 6 5.563671 GCCTCCAAAAAGAAACATGAGAGAC 60.564 44.000 0.00 0.00 0.00 3.36
6 7 4.520492 GCCTCCAAAAAGAAACATGAGAGA 59.480 41.667 0.00 0.00 0.00 3.10
7 8 4.279169 TGCCTCCAAAAAGAAACATGAGAG 59.721 41.667 0.00 0.00 0.00 3.20
8 9 4.214310 TGCCTCCAAAAAGAAACATGAGA 58.786 39.130 0.00 0.00 0.00 3.27
9 10 4.589216 TGCCTCCAAAAAGAAACATGAG 57.411 40.909 0.00 0.00 0.00 2.90
10 11 5.070180 TGATTGCCTCCAAAAAGAAACATGA 59.930 36.000 0.00 0.00 34.05 3.07
11 12 5.178067 GTGATTGCCTCCAAAAAGAAACATG 59.822 40.000 0.00 0.00 34.05 3.21
12 13 5.299949 GTGATTGCCTCCAAAAAGAAACAT 58.700 37.500 0.00 0.00 34.05 2.71
13 14 4.692228 GTGATTGCCTCCAAAAAGAAACA 58.308 39.130 0.00 0.00 34.05 2.83
14 15 3.735746 CGTGATTGCCTCCAAAAAGAAAC 59.264 43.478 0.00 0.00 34.05 2.78
15 16 3.383185 ACGTGATTGCCTCCAAAAAGAAA 59.617 39.130 0.00 0.00 34.05 2.52
16 17 2.955660 ACGTGATTGCCTCCAAAAAGAA 59.044 40.909 0.00 0.00 34.05 2.52
17 18 2.582052 ACGTGATTGCCTCCAAAAAGA 58.418 42.857 0.00 0.00 34.05 2.52
18 19 3.369546 AACGTGATTGCCTCCAAAAAG 57.630 42.857 0.00 0.00 34.05 2.27
19 20 3.118956 ACAAACGTGATTGCCTCCAAAAA 60.119 39.130 0.00 0.00 34.05 1.94
20 21 2.428890 ACAAACGTGATTGCCTCCAAAA 59.571 40.909 0.00 0.00 34.05 2.44
21 22 2.028130 ACAAACGTGATTGCCTCCAAA 58.972 42.857 0.00 0.00 34.05 3.28
22 23 1.686355 ACAAACGTGATTGCCTCCAA 58.314 45.000 0.00 0.00 33.52 3.53
23 24 1.686355 AACAAACGTGATTGCCTCCA 58.314 45.000 0.00 0.00 33.52 3.86
24 25 2.223711 ACAAACAAACGTGATTGCCTCC 60.224 45.455 0.00 0.00 40.27 4.30
25 26 3.078594 ACAAACAAACGTGATTGCCTC 57.921 42.857 0.00 0.00 40.27 4.70
26 27 3.518634 AACAAACAAACGTGATTGCCT 57.481 38.095 0.00 0.00 40.27 4.75
27 28 3.733727 CCTAACAAACAAACGTGATTGCC 59.266 43.478 0.00 0.00 40.27 4.52
28 29 3.181575 GCCTAACAAACAAACGTGATTGC 59.818 43.478 0.00 0.00 40.27 3.56
29 30 3.733727 GGCCTAACAAACAAACGTGATTG 59.266 43.478 0.00 0.00 41.85 2.67
30 31 3.381908 TGGCCTAACAAACAAACGTGATT 59.618 39.130 3.32 0.00 0.00 2.57
31 32 2.952978 TGGCCTAACAAACAAACGTGAT 59.047 40.909 3.32 0.00 0.00 3.06
32 33 2.356382 CTGGCCTAACAAACAAACGTGA 59.644 45.455 3.32 0.00 0.00 4.35
33 34 2.356382 TCTGGCCTAACAAACAAACGTG 59.644 45.455 3.32 0.00 0.00 4.49
34 35 2.356695 GTCTGGCCTAACAAACAAACGT 59.643 45.455 3.32 0.00 0.00 3.99
35 36 2.356382 TGTCTGGCCTAACAAACAAACG 59.644 45.455 3.32 0.00 0.00 3.60
36 37 4.379339 TTGTCTGGCCTAACAAACAAAC 57.621 40.909 17.69 0.00 32.69 2.93
37 38 6.716934 TTATTGTCTGGCCTAACAAACAAA 57.283 33.333 21.97 15.30 38.74 2.83
38 39 6.716934 TTTATTGTCTGGCCTAACAAACAA 57.283 33.333 21.97 16.87 38.74 2.83
39 40 6.716934 TTTTATTGTCTGGCCTAACAAACA 57.283 33.333 21.97 13.13 38.74 2.83
40 41 7.061789 CGATTTTTATTGTCTGGCCTAACAAAC 59.938 37.037 21.97 5.48 38.74 2.93
41 42 7.087639 CGATTTTTATTGTCTGGCCTAACAAA 58.912 34.615 21.97 9.93 38.74 2.83
42 43 6.207810 ACGATTTTTATTGTCTGGCCTAACAA 59.792 34.615 20.87 20.87 39.52 2.83
43 44 5.708230 ACGATTTTTATTGTCTGGCCTAACA 59.292 36.000 3.32 5.36 0.00 2.41
44 45 6.190954 ACGATTTTTATTGTCTGGCCTAAC 57.809 37.500 3.32 2.23 0.00 2.34
45 46 5.355910 GGACGATTTTTATTGTCTGGCCTAA 59.644 40.000 3.32 0.00 35.71 2.69
46 47 4.879545 GGACGATTTTTATTGTCTGGCCTA 59.120 41.667 3.32 0.00 35.71 3.93
47 48 3.694566 GGACGATTTTTATTGTCTGGCCT 59.305 43.478 3.32 0.00 35.71 5.19
48 49 3.442273 TGGACGATTTTTATTGTCTGGCC 59.558 43.478 0.00 0.00 35.71 5.36
49 50 4.695217 TGGACGATTTTTATTGTCTGGC 57.305 40.909 0.00 0.00 35.71 4.85
50 51 6.254281 AGTTGGACGATTTTTATTGTCTGG 57.746 37.500 0.00 0.00 35.71 3.86
51 52 6.961554 GCTAGTTGGACGATTTTTATTGTCTG 59.038 38.462 0.00 0.00 35.71 3.51
52 53 6.653320 TGCTAGTTGGACGATTTTTATTGTCT 59.347 34.615 0.00 0.00 35.71 3.41
53 54 6.837992 TGCTAGTTGGACGATTTTTATTGTC 58.162 36.000 0.00 0.00 34.86 3.18
54 55 6.811253 TGCTAGTTGGACGATTTTTATTGT 57.189 33.333 0.00 0.00 0.00 2.71
55 56 9.438291 CTAATGCTAGTTGGACGATTTTTATTG 57.562 33.333 0.00 0.00 0.00 1.90
56 57 8.621286 CCTAATGCTAGTTGGACGATTTTTATT 58.379 33.333 0.00 0.00 0.00 1.40
57 58 7.990886 TCCTAATGCTAGTTGGACGATTTTTAT 59.009 33.333 0.00 0.00 0.00 1.40
58 59 7.332557 TCCTAATGCTAGTTGGACGATTTTTA 58.667 34.615 0.00 0.00 0.00 1.52
59 60 6.177610 TCCTAATGCTAGTTGGACGATTTTT 58.822 36.000 0.00 0.00 0.00 1.94
60 61 5.741011 TCCTAATGCTAGTTGGACGATTTT 58.259 37.500 0.00 0.00 0.00 1.82
61 62 5.353394 TCCTAATGCTAGTTGGACGATTT 57.647 39.130 0.00 0.00 0.00 2.17
62 63 4.740934 GCTCCTAATGCTAGTTGGACGATT 60.741 45.833 0.00 0.00 0.00 3.34
63 64 3.243907 GCTCCTAATGCTAGTTGGACGAT 60.244 47.826 0.00 0.00 0.00 3.73
64 65 2.100916 GCTCCTAATGCTAGTTGGACGA 59.899 50.000 0.00 0.00 0.00 4.20
65 66 2.101582 AGCTCCTAATGCTAGTTGGACG 59.898 50.000 0.00 0.00 39.21 4.79
66 67 3.828875 AGCTCCTAATGCTAGTTGGAC 57.171 47.619 0.00 0.00 39.21 4.02
99 100 8.344098 GCTATAGACTAGCTAGTTCTCGAAAAA 58.656 37.037 26.71 9.86 36.50 1.94
100 101 7.863666 GCTATAGACTAGCTAGTTCTCGAAAA 58.136 38.462 26.71 10.46 36.50 2.29
101 102 7.424227 GCTATAGACTAGCTAGTTCTCGAAA 57.576 40.000 26.71 10.77 36.50 3.46
113 114 2.559231 GGGGTGTCAGCTATAGACTAGC 59.441 54.545 3.21 0.00 40.67 3.42
114 115 4.107127 AGGGGTGTCAGCTATAGACTAG 57.893 50.000 3.21 0.00 36.94 2.57
115 116 5.658198 TTAGGGGTGTCAGCTATAGACTA 57.342 43.478 3.21 0.00 36.94 2.59
116 117 4.537945 TTAGGGGTGTCAGCTATAGACT 57.462 45.455 3.21 0.00 36.94 3.24
117 118 5.609533 TTTTAGGGGTGTCAGCTATAGAC 57.390 43.478 3.21 0.00 36.55 2.59
153 154 2.667418 CTGGGCTGGTCCTGTCAG 59.333 66.667 2.50 5.09 35.49 3.51
154 155 3.640407 GCTGGGCTGGTCCTGTCA 61.640 66.667 2.50 0.00 34.39 3.58
155 156 4.416738 GGCTGGGCTGGTCCTGTC 62.417 72.222 0.00 0.00 34.39 3.51
168 169 2.410322 TTATATGGGGCGCTGGGCTG 62.410 60.000 16.51 0.00 42.94 4.85
169 170 1.715019 TTTATATGGGGCGCTGGGCT 61.715 55.000 16.51 0.00 42.94 5.19
170 171 1.228429 TTTATATGGGGCGCTGGGC 60.228 57.895 7.64 8.35 42.51 5.36
171 172 0.179004 TGTTTATATGGGGCGCTGGG 60.179 55.000 7.64 0.00 0.00 4.45
172 173 1.238439 CTGTTTATATGGGGCGCTGG 58.762 55.000 7.64 0.00 0.00 4.85
173 174 1.967319 ACTGTTTATATGGGGCGCTG 58.033 50.000 7.64 0.00 0.00 5.18
174 175 2.550208 GCTACTGTTTATATGGGGCGCT 60.550 50.000 7.64 0.00 0.00 5.92
175 176 1.804748 GCTACTGTTTATATGGGGCGC 59.195 52.381 0.00 0.00 0.00 6.53
176 177 3.067106 CTGCTACTGTTTATATGGGGCG 58.933 50.000 0.00 0.00 0.00 6.13
177 178 2.814336 GCTGCTACTGTTTATATGGGGC 59.186 50.000 0.00 0.00 0.00 5.80
178 179 3.073062 AGGCTGCTACTGTTTATATGGGG 59.927 47.826 0.00 0.00 0.00 4.96
179 180 4.357918 AGGCTGCTACTGTTTATATGGG 57.642 45.455 0.00 0.00 0.00 4.00
180 181 4.932200 GCTAGGCTGCTACTGTTTATATGG 59.068 45.833 0.00 0.00 0.00 2.74
181 182 5.541845 TGCTAGGCTGCTACTGTTTATATG 58.458 41.667 0.00 0.00 0.00 1.78
182 183 5.279708 CCTGCTAGGCTGCTACTGTTTATAT 60.280 44.000 0.00 0.00 0.00 0.86
183 184 4.039245 CCTGCTAGGCTGCTACTGTTTATA 59.961 45.833 0.00 0.00 0.00 0.98
184 185 3.181461 CCTGCTAGGCTGCTACTGTTTAT 60.181 47.826 0.00 0.00 0.00 1.40
185 186 2.168521 CCTGCTAGGCTGCTACTGTTTA 59.831 50.000 0.00 0.00 0.00 2.01
186 187 1.065854 CCTGCTAGGCTGCTACTGTTT 60.066 52.381 0.00 0.00 0.00 2.83
187 188 0.539051 CCTGCTAGGCTGCTACTGTT 59.461 55.000 0.00 0.00 0.00 3.16
188 189 2.206635 CCTGCTAGGCTGCTACTGT 58.793 57.895 0.00 0.00 0.00 3.55
198 199 4.865865 GCTAGTTGGCCTGCTAGG 57.134 61.111 25.07 13.52 38.80 3.02
206 207 2.044053 TGCATGGGGCTAGTTGGC 60.044 61.111 0.00 0.00 45.15 4.52
207 208 0.546122 TACTGCATGGGGCTAGTTGG 59.454 55.000 0.00 0.00 45.15 3.77
208 209 2.224606 CATACTGCATGGGGCTAGTTG 58.775 52.381 0.00 0.00 45.15 3.16
209 210 2.645838 CATACTGCATGGGGCTAGTT 57.354 50.000 0.00 0.00 45.15 2.24
218 219 1.935873 CCGAACAGACCATACTGCATG 59.064 52.381 0.00 0.00 41.06 4.06
219 220 1.555075 ACCGAACAGACCATACTGCAT 59.445 47.619 0.00 0.00 41.06 3.96
220 221 0.973632 ACCGAACAGACCATACTGCA 59.026 50.000 0.00 0.00 41.06 4.41
221 222 1.641577 GACCGAACAGACCATACTGC 58.358 55.000 0.00 0.00 41.06 4.40
222 223 1.548719 TGGACCGAACAGACCATACTG 59.451 52.381 0.00 0.00 42.78 2.74
223 224 1.825474 CTGGACCGAACAGACCATACT 59.175 52.381 0.00 0.00 38.20 2.12
224 225 1.822990 TCTGGACCGAACAGACCATAC 59.177 52.381 0.00 0.00 39.87 2.39
225 226 2.225382 TCTGGACCGAACAGACCATA 57.775 50.000 0.00 0.00 39.87 2.74
226 227 1.002087 GTTCTGGACCGAACAGACCAT 59.998 52.381 18.38 0.00 44.07 3.55
227 228 0.391597 GTTCTGGACCGAACAGACCA 59.608 55.000 18.38 0.00 44.07 4.02
228 229 0.320508 GGTTCTGGACCGAACAGACC 60.321 60.000 22.21 9.17 44.07 3.85
229 230 3.212450 GGTTCTGGACCGAACAGAC 57.788 57.895 22.21 8.74 44.07 3.51
237 238 1.666872 CGGTTGTCGGTTCTGGACC 60.667 63.158 0.00 0.00 45.55 4.46
238 239 0.249573 TTCGGTTGTCGGTTCTGGAC 60.250 55.000 0.00 0.00 39.77 4.02
239 240 0.249573 GTTCGGTTGTCGGTTCTGGA 60.250 55.000 0.00 0.00 39.77 3.86
240 241 1.226030 GGTTCGGTTGTCGGTTCTGG 61.226 60.000 0.00 0.00 39.77 3.86
241 242 1.554042 CGGTTCGGTTGTCGGTTCTG 61.554 60.000 0.00 0.00 39.77 3.02
242 243 1.300388 CGGTTCGGTTGTCGGTTCT 60.300 57.895 0.00 0.00 39.77 3.01
243 244 0.668401 ATCGGTTCGGTTGTCGGTTC 60.668 55.000 0.00 0.00 39.77 3.62
244 245 0.668401 GATCGGTTCGGTTGTCGGTT 60.668 55.000 0.00 0.00 39.77 4.44
245 246 1.080298 GATCGGTTCGGTTGTCGGT 60.080 57.895 0.00 0.00 39.77 4.69
246 247 2.156446 CGATCGGTTCGGTTGTCGG 61.156 63.158 7.38 0.00 44.28 4.79
247 248 3.370131 CGATCGGTTCGGTTGTCG 58.630 61.111 7.38 0.00 44.28 4.35
255 256 0.248949 GTCCCTAGCACGATCGGTTC 60.249 60.000 20.98 7.71 0.00 3.62
256 257 1.673808 GGTCCCTAGCACGATCGGTT 61.674 60.000 20.98 8.97 0.00 4.44
257 258 2.125961 GGTCCCTAGCACGATCGGT 61.126 63.158 20.98 6.09 0.00 4.69
258 259 2.728817 GGTCCCTAGCACGATCGG 59.271 66.667 20.98 9.59 0.00 4.18
259 260 2.119147 CTCGGTCCCTAGCACGATCG 62.119 65.000 14.88 14.88 34.60 3.69
260 261 1.655329 CTCGGTCCCTAGCACGATC 59.345 63.158 0.00 0.00 34.60 3.69
261 262 2.491022 GCTCGGTCCCTAGCACGAT 61.491 63.158 5.06 0.00 38.63 3.73
262 263 3.138798 GCTCGGTCCCTAGCACGA 61.139 66.667 5.06 0.00 38.63 4.35
263 264 3.127352 GAGCTCGGTCCCTAGCACG 62.127 68.421 11.87 0.00 41.32 5.34
264 265 1.730451 GAGAGCTCGGTCCCTAGCAC 61.730 65.000 8.37 5.98 41.32 4.40
265 266 1.454111 GAGAGCTCGGTCCCTAGCA 60.454 63.158 8.37 0.00 41.32 3.49
266 267 3.439008 GAGAGCTCGGTCCCTAGC 58.561 66.667 8.37 1.75 39.08 3.42
276 277 1.478916 AGCTAAGGAAACCGAGAGCTC 59.521 52.381 5.27 5.27 34.36 4.09
277 278 1.562783 AGCTAAGGAAACCGAGAGCT 58.437 50.000 0.00 0.00 34.54 4.09
278 279 2.800273 GCTAGCTAAGGAAACCGAGAGC 60.800 54.545 7.70 0.00 0.00 4.09
279 280 2.427453 TGCTAGCTAAGGAAACCGAGAG 59.573 50.000 17.23 0.00 0.00 3.20
280 281 2.427453 CTGCTAGCTAAGGAAACCGAGA 59.573 50.000 17.23 0.00 0.00 4.04
281 282 2.427453 TCTGCTAGCTAAGGAAACCGAG 59.573 50.000 17.23 0.00 0.00 4.63
282 283 2.427453 CTCTGCTAGCTAAGGAAACCGA 59.573 50.000 17.23 0.00 0.00 4.69
283 284 2.427453 TCTCTGCTAGCTAAGGAAACCG 59.573 50.000 17.23 0.00 0.00 4.44
284 285 3.431068 GGTCTCTGCTAGCTAAGGAAACC 60.431 52.174 17.23 12.11 0.00 3.27
285 286 3.735514 CGGTCTCTGCTAGCTAAGGAAAC 60.736 52.174 17.23 7.35 0.00 2.78
286 287 2.427453 CGGTCTCTGCTAGCTAAGGAAA 59.573 50.000 17.23 0.00 0.00 3.13
287 288 2.025155 CGGTCTCTGCTAGCTAAGGAA 58.975 52.381 17.23 0.00 0.00 3.36
288 289 1.212195 TCGGTCTCTGCTAGCTAAGGA 59.788 52.381 17.23 8.00 0.00 3.36
289 290 1.681538 TCGGTCTCTGCTAGCTAAGG 58.318 55.000 17.23 3.91 0.00 2.69
290 291 2.095969 CGATCGGTCTCTGCTAGCTAAG 60.096 54.545 17.23 12.93 0.00 2.18
291 292 1.874231 CGATCGGTCTCTGCTAGCTAA 59.126 52.381 17.23 2.73 0.00 3.09
292 293 1.514003 CGATCGGTCTCTGCTAGCTA 58.486 55.000 17.23 3.10 0.00 3.32
293 294 1.169661 CCGATCGGTCTCTGCTAGCT 61.170 60.000 26.35 0.00 0.00 3.32
294 295 1.284408 CCGATCGGTCTCTGCTAGC 59.716 63.158 26.35 8.10 0.00 3.42
305 306 2.159156 TCAGTAAACATGGACCGATCGG 60.159 50.000 32.20 32.20 42.03 4.18
306 307 3.116300 CTCAGTAAACATGGACCGATCG 58.884 50.000 8.51 8.51 0.00 3.69
307 308 3.132289 TCCTCAGTAAACATGGACCGATC 59.868 47.826 0.00 0.00 0.00 3.69
308 309 3.104512 TCCTCAGTAAACATGGACCGAT 58.895 45.455 0.00 0.00 0.00 4.18
309 310 2.232941 GTCCTCAGTAAACATGGACCGA 59.767 50.000 0.00 0.00 40.74 4.69
310 311 2.618053 GTCCTCAGTAAACATGGACCG 58.382 52.381 0.00 0.00 40.74 4.79
312 313 2.232941 TCGGTCCTCAGTAAACATGGAC 59.767 50.000 0.00 0.00 44.51 4.02
313 314 2.531771 TCGGTCCTCAGTAAACATGGA 58.468 47.619 0.00 0.00 0.00 3.41
314 315 3.328382 TTCGGTCCTCAGTAAACATGG 57.672 47.619 0.00 0.00 0.00 3.66
315 316 5.880054 ATTTTCGGTCCTCAGTAAACATG 57.120 39.130 0.00 0.00 0.00 3.21
316 317 7.391620 TCTAATTTTCGGTCCTCAGTAAACAT 58.608 34.615 0.00 0.00 0.00 2.71
317 318 6.761312 TCTAATTTTCGGTCCTCAGTAAACA 58.239 36.000 0.00 0.00 0.00 2.83
318 319 7.662604 TTCTAATTTTCGGTCCTCAGTAAAC 57.337 36.000 0.00 0.00 0.00 2.01
319 320 7.094933 GCTTTCTAATTTTCGGTCCTCAGTAAA 60.095 37.037 0.00 0.00 0.00 2.01
320 321 6.370718 GCTTTCTAATTTTCGGTCCTCAGTAA 59.629 38.462 0.00 0.00 0.00 2.24
321 322 5.873164 GCTTTCTAATTTTCGGTCCTCAGTA 59.127 40.000 0.00 0.00 0.00 2.74
322 323 4.695928 GCTTTCTAATTTTCGGTCCTCAGT 59.304 41.667 0.00 0.00 0.00 3.41
323 324 4.695455 TGCTTTCTAATTTTCGGTCCTCAG 59.305 41.667 0.00 0.00 0.00 3.35
324 325 4.454504 GTGCTTTCTAATTTTCGGTCCTCA 59.545 41.667 0.00 0.00 0.00 3.86
325 326 4.142665 GGTGCTTTCTAATTTTCGGTCCTC 60.143 45.833 0.00 0.00 0.00 3.71
326 327 3.756963 GGTGCTTTCTAATTTTCGGTCCT 59.243 43.478 0.00 0.00 0.00 3.85
327 328 3.425758 CGGTGCTTTCTAATTTTCGGTCC 60.426 47.826 0.00 0.00 0.00 4.46
328 329 3.434299 TCGGTGCTTTCTAATTTTCGGTC 59.566 43.478 0.00 0.00 0.00 4.79
329 330 3.404899 TCGGTGCTTTCTAATTTTCGGT 58.595 40.909 0.00 0.00 0.00 4.69
330 331 4.403453 CTTCGGTGCTTTCTAATTTTCGG 58.597 43.478 0.00 0.00 0.00 4.30
331 332 3.846335 GCTTCGGTGCTTTCTAATTTTCG 59.154 43.478 0.00 0.00 0.00 3.46
332 333 4.617223 GTGCTTCGGTGCTTTCTAATTTTC 59.383 41.667 2.64 0.00 0.00 2.29
333 334 4.546570 GTGCTTCGGTGCTTTCTAATTTT 58.453 39.130 2.64 0.00 0.00 1.82
334 335 3.057526 GGTGCTTCGGTGCTTTCTAATTT 60.058 43.478 2.64 0.00 0.00 1.82
335 336 2.488153 GGTGCTTCGGTGCTTTCTAATT 59.512 45.455 2.64 0.00 0.00 1.40
336 337 2.084546 GGTGCTTCGGTGCTTTCTAAT 58.915 47.619 2.64 0.00 0.00 1.73
337 338 1.519408 GGTGCTTCGGTGCTTTCTAA 58.481 50.000 2.64 0.00 0.00 2.10
338 339 0.669318 CGGTGCTTCGGTGCTTTCTA 60.669 55.000 2.64 0.00 0.00 2.10
339 340 1.961277 CGGTGCTTCGGTGCTTTCT 60.961 57.895 2.64 0.00 0.00 2.52
340 341 1.503818 TTCGGTGCTTCGGTGCTTTC 61.504 55.000 2.64 0.00 0.00 2.62
341 342 1.525077 TTCGGTGCTTCGGTGCTTT 60.525 52.632 2.64 0.00 0.00 3.51
342 343 2.110213 TTCGGTGCTTCGGTGCTT 59.890 55.556 2.64 0.00 0.00 3.91
343 344 2.665185 GTTCGGTGCTTCGGTGCT 60.665 61.111 2.64 0.00 0.00 4.40
344 345 3.723348 GGTTCGGTGCTTCGGTGC 61.723 66.667 0.01 0.00 0.00 5.01
345 346 3.411351 CGGTTCGGTGCTTCGGTG 61.411 66.667 0.01 0.00 0.00 4.94
346 347 3.154584 TTCGGTTCGGTGCTTCGGT 62.155 57.895 0.01 0.00 0.00 4.69
347 348 2.356553 TTCGGTTCGGTGCTTCGG 60.357 61.111 0.01 0.00 0.00 4.30
348 349 2.851104 GTTCGGTTCGGTGCTTCG 59.149 61.111 0.00 0.00 0.00 3.79
349 350 2.664436 CCGTTCGGTTCGGTGCTTC 61.664 63.158 2.82 0.00 42.62 3.86
350 351 2.663852 CCGTTCGGTTCGGTGCTT 60.664 61.111 2.82 0.00 42.62 3.91
368 369 0.665369 GAGCGTTCGGTTTCCTCGAA 60.665 55.000 0.00 0.00 43.18 3.71
369 370 1.080974 GAGCGTTCGGTTTCCTCGA 60.081 57.895 0.00 0.00 34.62 4.04
370 371 1.372499 TGAGCGTTCGGTTTCCTCG 60.372 57.895 0.00 0.00 0.00 4.63
371 372 1.289800 GGTGAGCGTTCGGTTTCCTC 61.290 60.000 0.00 0.00 0.00 3.71
372 373 1.301479 GGTGAGCGTTCGGTTTCCT 60.301 57.895 0.00 0.00 0.00 3.36
373 374 2.322830 GGGTGAGCGTTCGGTTTCC 61.323 63.158 0.00 4.69 0.00 3.13
374 375 2.322830 GGGGTGAGCGTTCGGTTTC 61.323 63.158 0.00 0.00 0.00 2.78
375 376 1.474332 TAGGGGTGAGCGTTCGGTTT 61.474 55.000 0.00 0.00 0.00 3.27
376 377 1.474332 TTAGGGGTGAGCGTTCGGTT 61.474 55.000 0.00 0.00 0.00 4.44
377 378 1.909781 TTAGGGGTGAGCGTTCGGT 60.910 57.895 0.00 0.00 0.00 4.69
378 379 1.447314 GTTAGGGGTGAGCGTTCGG 60.447 63.158 0.00 0.00 0.00 4.30
379 380 1.447314 GGTTAGGGGTGAGCGTTCG 60.447 63.158 0.00 0.00 0.00 3.95
380 381 0.672711 GTGGTTAGGGGTGAGCGTTC 60.673 60.000 0.00 0.00 0.00 3.95
381 382 1.373812 GTGGTTAGGGGTGAGCGTT 59.626 57.895 0.00 0.00 0.00 4.84
382 383 2.939261 CGTGGTTAGGGGTGAGCGT 61.939 63.158 0.00 0.00 0.00 5.07
383 384 2.125673 CGTGGTTAGGGGTGAGCG 60.126 66.667 0.00 0.00 0.00 5.03
384 385 2.267961 CCGTGGTTAGGGGTGAGC 59.732 66.667 0.00 0.00 0.00 4.26
385 386 2.267961 GCCGTGGTTAGGGGTGAG 59.732 66.667 0.00 0.00 32.43 3.51
386 387 3.697747 CGCCGTGGTTAGGGGTGA 61.698 66.667 0.00 0.00 37.00 4.02
387 388 4.770874 CCGCCGTGGTTAGGGGTG 62.771 72.222 0.00 0.00 39.73 4.61
408 409 2.154798 CTCGGAGTTTCCAGTGGCGA 62.155 60.000 3.51 5.70 35.91 5.54
449 450 0.323302 TGCGCCATTGGAACAGTAGA 59.677 50.000 6.95 0.00 42.39 2.59
455 456 1.372872 GGTTGTGCGCCATTGGAAC 60.373 57.895 6.95 1.16 0.00 3.62
468 469 2.332654 GGCGATTGGCTTCGGTTGT 61.333 57.895 11.34 0.00 42.94 3.32
494 495 1.774254 GGGGTGATGGATGTGGTATGA 59.226 52.381 0.00 0.00 0.00 2.15
499 500 2.516930 GCGGGGTGATGGATGTGG 60.517 66.667 0.00 0.00 0.00 4.17
612 639 6.413818 CGCTTCGCTAAAAGAAAAGAAAAGAA 59.586 34.615 0.00 0.00 0.00 2.52
613 640 5.907391 CGCTTCGCTAAAAGAAAAGAAAAGA 59.093 36.000 0.00 0.00 0.00 2.52
673 739 3.204418 GCTTTGGGCTGATCTGGC 58.796 61.111 16.61 16.61 38.06 4.85
700 766 0.113580 AAAGTATTGTTGGGCCGGGT 59.886 50.000 2.18 0.00 0.00 5.28
722 789 2.465860 ATCGTTGGGTCGACATGAAA 57.534 45.000 18.91 2.64 42.56 2.69
723 790 3.812156 ATATCGTTGGGTCGACATGAA 57.188 42.857 18.91 3.41 42.56 2.57
725 792 5.047847 ACTTTATATCGTTGGGTCGACATG 58.952 41.667 18.91 2.36 42.56 3.21
728 795 5.825507 AGTACTTTATATCGTTGGGTCGAC 58.174 41.667 7.13 7.13 42.56 4.20
741 808 9.569122 GCCCCATTGAATTTCTAGTACTTTATA 57.431 33.333 0.00 0.00 0.00 0.98
742 809 7.505923 GGCCCCATTGAATTTCTAGTACTTTAT 59.494 37.037 0.00 0.00 0.00 1.40
755 822 1.009923 AGGATTGGGCCCCATTGAATT 59.990 47.619 22.27 0.00 31.53 2.17
761 828 1.865595 TCATTTAGGATTGGGCCCCAT 59.134 47.619 22.27 15.38 31.53 4.00
766 833 4.122046 GCACAAATCATTTAGGATTGGGC 58.878 43.478 0.00 0.00 37.55 5.36
767 834 5.603170 AGCACAAATCATTTAGGATTGGG 57.397 39.130 0.00 0.00 37.55 4.12
772 839 9.693739 TCCTATAAAAGCACAAATCATTTAGGA 57.306 29.630 0.00 0.00 0.00 2.94
773 840 9.736023 GTCCTATAAAAGCACAAATCATTTAGG 57.264 33.333 0.00 0.00 0.00 2.69
777 844 9.995003 TTTTGTCCTATAAAAGCACAAATCATT 57.005 25.926 0.00 0.00 36.95 2.57
778 845 9.995003 TTTTTGTCCTATAAAAGCACAAATCAT 57.005 25.926 0.00 0.00 36.95 2.45
779 846 9.995003 ATTTTTGTCCTATAAAAGCACAAATCA 57.005 25.926 0.00 0.00 36.95 2.57
783 850 8.032451 GGCTATTTTTGTCCTATAAAAGCACAA 58.968 33.333 0.00 0.00 0.00 3.33
784 851 7.363443 GGGCTATTTTTGTCCTATAAAAGCACA 60.363 37.037 0.00 0.00 0.00 4.57
785 852 6.978659 GGGCTATTTTTGTCCTATAAAAGCAC 59.021 38.462 0.00 0.00 0.00 4.40
786 853 6.183360 CGGGCTATTTTTGTCCTATAAAAGCA 60.183 38.462 0.00 0.00 0.00 3.91
787 854 6.206498 CGGGCTATTTTTGTCCTATAAAAGC 58.794 40.000 0.00 0.00 0.00 3.51
788 855 6.734871 GCCGGGCTATTTTTGTCCTATAAAAG 60.735 42.308 12.87 0.00 0.00 2.27
789 856 5.068067 GCCGGGCTATTTTTGTCCTATAAAA 59.932 40.000 12.87 0.00 0.00 1.52
790 857 4.581409 GCCGGGCTATTTTTGTCCTATAAA 59.419 41.667 12.87 0.00 0.00 1.40
791 858 4.139038 GCCGGGCTATTTTTGTCCTATAA 58.861 43.478 12.87 0.00 0.00 0.98
792 859 3.393278 AGCCGGGCTATTTTTGTCCTATA 59.607 43.478 22.47 0.00 36.99 1.31
793 860 2.174854 AGCCGGGCTATTTTTGTCCTAT 59.825 45.455 22.47 0.00 36.99 2.57
794 861 1.562475 AGCCGGGCTATTTTTGTCCTA 59.438 47.619 22.47 0.00 36.99 2.94
795 862 0.331616 AGCCGGGCTATTTTTGTCCT 59.668 50.000 22.47 0.00 36.99 3.85
796 863 1.947456 CTAGCCGGGCTATTTTTGTCC 59.053 52.381 27.90 0.00 40.54 4.02
797 864 1.947456 CCTAGCCGGGCTATTTTTGTC 59.053 52.381 27.90 0.00 40.54 3.18
798 865 2.052782 CCTAGCCGGGCTATTTTTGT 57.947 50.000 27.90 3.68 40.54 2.83
832 899 1.968493 GGGTGATATCGGAGGCAGTTA 59.032 52.381 0.00 0.00 0.00 2.24
840 907 5.127194 GCATATAGAAGTGGGTGATATCGGA 59.873 44.000 0.00 0.00 0.00 4.55
846 913 2.368548 TGCGCATATAGAAGTGGGTGAT 59.631 45.455 5.66 0.00 0.00 3.06
914 981 4.880426 GGAGATGGGGGCGGAGGA 62.880 72.222 0.00 0.00 0.00 3.71
975 1042 4.593864 GGCGCCGGTGGAGATCTC 62.594 72.222 18.41 14.75 0.00 2.75
995 1062 1.067416 GCGGCTCGGTACATGATGA 59.933 57.895 0.00 0.00 0.00 2.92
1118 1185 4.923710 CGGATCGGACGCATCGCA 62.924 66.667 0.00 0.00 0.00 5.10
1119 1186 4.624117 TCGGATCGGACGCATCGC 62.624 66.667 0.00 0.00 0.00 4.58
1174 1241 0.460284 CACACCACGGATGCTAGTCC 60.460 60.000 0.00 0.00 34.82 3.85
1191 1258 0.096976 CATCAAATCCGCGTGACCAC 59.903 55.000 4.92 0.00 0.00 4.16
1219 1286 4.540153 CAGAATGGCCCCACTACG 57.460 61.111 0.00 0.00 0.00 3.51
1260 1327 5.277974 CGATATACCAAGGCAAACATTCAGG 60.278 44.000 0.00 0.00 0.00 3.86
1274 1341 5.441500 TGCTTTCCCAATTCGATATACCAA 58.558 37.500 0.00 0.00 0.00 3.67
1337 1408 4.593597 ATTTACACGAACCTATGCAACG 57.406 40.909 0.00 0.00 0.00 4.10
1360 1431 2.295885 CAGAGATGAACCTTCCCATGC 58.704 52.381 0.00 0.00 0.00 4.06
1363 1434 0.250234 CGCAGAGATGAACCTTCCCA 59.750 55.000 0.00 0.00 0.00 4.37
1366 1437 1.734465 CAACCGCAGAGATGAACCTTC 59.266 52.381 0.00 0.00 0.00 3.46
1371 1442 1.266718 GCAAACAACCGCAGAGATGAA 59.733 47.619 0.00 0.00 0.00 2.57
1378 1458 1.258458 CAAACATGCAAACAACCGCAG 59.742 47.619 0.00 0.00 42.37 5.18
1380 1460 0.581053 CCAAACATGCAAACAACCGC 59.419 50.000 0.00 0.00 0.00 5.68
1381 1461 1.933247 ACCAAACATGCAAACAACCG 58.067 45.000 0.00 0.00 0.00 4.44
1382 1462 6.370433 AATAAACCAAACATGCAAACAACC 57.630 33.333 0.00 0.00 0.00 3.77
1383 1463 9.379811 CAATAATAAACCAAACATGCAAACAAC 57.620 29.630 0.00 0.00 0.00 3.32
1385 1465 7.716998 ACCAATAATAAACCAAACATGCAAACA 59.283 29.630 0.00 0.00 0.00 2.83
1386 1466 8.014517 CACCAATAATAAACCAAACATGCAAAC 58.985 33.333 0.00 0.00 0.00 2.93
1388 1468 6.652481 CCACCAATAATAAACCAAACATGCAA 59.348 34.615 0.00 0.00 0.00 4.08
1389 1469 6.169094 CCACCAATAATAAACCAAACATGCA 58.831 36.000 0.00 0.00 0.00 3.96
1390 1470 5.584251 CCCACCAATAATAAACCAAACATGC 59.416 40.000 0.00 0.00 0.00 4.06
1391 1471 6.940739 TCCCACCAATAATAAACCAAACATG 58.059 36.000 0.00 0.00 0.00 3.21
1392 1472 7.401493 TCATCCCACCAATAATAAACCAAACAT 59.599 33.333 0.00 0.00 0.00 2.71
1393 1473 6.726299 TCATCCCACCAATAATAAACCAAACA 59.274 34.615 0.00 0.00 0.00 2.83
1394 1474 7.093509 ACTCATCCCACCAATAATAAACCAAAC 60.094 37.037 0.00 0.00 0.00 2.93
1395 1475 6.957020 ACTCATCCCACCAATAATAAACCAAA 59.043 34.615 0.00 0.00 0.00 3.28
1414 1494 5.674525 TGGTCATATCAGAACCAACTCATC 58.325 41.667 0.00 0.00 0.00 2.92
1422 1502 5.344743 TCTCACTTGGTCATATCAGAACC 57.655 43.478 0.00 0.00 0.00 3.62
1427 1507 8.021898 TCATGTAATCTCACTTGGTCATATCA 57.978 34.615 0.00 0.00 0.00 2.15
1434 1514 6.544931 CCATGAATCATGTAATCTCACTTGGT 59.455 38.462 20.39 0.00 39.94 3.67
1436 1516 6.514541 GCCCATGAATCATGTAATCTCACTTG 60.515 42.308 20.39 2.30 39.94 3.16
1437 1517 5.533903 GCCCATGAATCATGTAATCTCACTT 59.466 40.000 20.39 0.00 39.94 3.16
1442 1522 7.309621 GCATTAAGCCCATGAATCATGTAATCT 60.310 37.037 20.39 9.46 39.94 2.40
1443 1523 6.810182 GCATTAAGCCCATGAATCATGTAATC 59.190 38.462 20.39 7.58 39.94 1.75
1460 1548 5.254339 AGGACAAAGCAATAGCATTAAGC 57.746 39.130 0.00 0.00 45.49 3.09
1464 1552 4.248058 GCAAAGGACAAAGCAATAGCATT 58.752 39.130 0.00 0.00 45.49 3.56
1468 1556 5.697633 ACATTTGCAAAGGACAAAGCAATAG 59.302 36.000 28.81 1.04 45.23 1.73
1481 1581 7.225523 GGATACAAAGCATACATTTGCAAAG 57.774 36.000 18.19 11.80 45.23 2.77
1501 1601 8.768397 ACACAAGAATTAGAATGGTACTGGATA 58.232 33.333 0.00 0.00 0.00 2.59
1518 1618 5.473504 AGCTAATGAAACCGAACACAAGAAT 59.526 36.000 0.00 0.00 0.00 2.40
1526 1626 9.257651 ACATTACTATAGCTAATGAAACCGAAC 57.742 33.333 25.52 0.00 35.81 3.95
1541 1641 6.369890 AGGCGCATCATGAAACATTACTATAG 59.630 38.462 10.83 0.00 0.00 1.31
1543 1643 5.065914 AGGCGCATCATGAAACATTACTAT 58.934 37.500 10.83 0.00 0.00 2.12
1545 1645 3.282021 AGGCGCATCATGAAACATTACT 58.718 40.909 10.83 0.00 0.00 2.24
1570 1670 6.545666 ACAAGCCATTCCGAATTATACATTCA 59.454 34.615 0.00 0.00 0.00 2.57
1579 1679 5.336451 GGACTTTAACAAGCCATTCCGAATT 60.336 40.000 0.00 0.00 32.57 2.17
1650 1750 6.205464 AGGCAAATATATCATGACCGTTCAAG 59.795 38.462 0.00 0.00 34.61 3.02
1745 1845 5.224441 TCCAAGGTTATGGCTCTACCTAAT 58.776 41.667 5.63 0.00 41.33 1.73
1780 1880 1.668419 ATATTCTGCCTCCGCACAAC 58.332 50.000 0.00 0.00 41.12 3.32
2567 2667 8.018520 CCACTAATCTATAGTACAGAAGCGAAG 58.981 40.741 0.00 0.00 0.00 3.79
2631 2731 6.935771 AGCTCTGCCTTTAGATTCATTATCTG 59.064 38.462 0.00 0.00 43.52 2.90
2682 2782 4.473444 TGAAGAGCATCCAAAAGGAAAGT 58.527 39.130 0.00 0.00 33.66 2.66
2777 2877 5.091431 GCAAGAAATTCTTCCAGAACATCG 58.909 41.667 5.09 0.00 37.00 3.84
3344 3454 1.282157 CCAGGTCTTCCCCAGGTAAAG 59.718 57.143 0.00 0.00 0.00 1.85
3425 3535 6.814506 ATCAGCCAGATAACTGAATAATGC 57.185 37.500 0.79 0.00 45.49 3.56
3689 3800 2.103094 TCATTTACGAGGGGATCTGCAG 59.897 50.000 7.63 7.63 0.00 4.41
3882 3997 3.026694 AGTATTTCCCTCAAAGGCATGC 58.973 45.455 9.90 9.90 32.73 4.06
4196 4342 5.119694 GGGTTTGGTCAACTGCAATAAAAA 58.880 37.500 0.00 0.00 35.46 1.94
4241 4387 6.822667 TCTTCAAGATAGCTGATTTTGCAA 57.177 33.333 0.00 0.00 31.19 4.08
4304 4450 4.287845 AGTGGAGCATCAGCCATGATTATA 59.712 41.667 0.00 0.00 43.92 0.98
4406 4552 6.449698 ACATTAAGGTTCAGCAGAAATGTTG 58.550 36.000 0.00 0.00 35.08 3.33
4467 4613 3.970610 CAGTGCAGAATGTGTTTTTCTCG 59.029 43.478 0.00 0.00 39.31 4.04
4489 4635 7.715249 TGAGCCTATAATTTCTACAATGTGTCC 59.285 37.037 0.00 0.00 0.00 4.02
4504 4650 3.874316 TCACCATCCCTGAGCCTATAAT 58.126 45.455 0.00 0.00 0.00 1.28
4623 5458 8.603832 ATCTAAAGATAGAGGGCTCCCTGGTT 62.604 46.154 13.10 0.52 41.36 3.67
4875 5710 0.674895 ACTGTGGCGGCAAAGAGATC 60.675 55.000 33.70 11.30 0.00 2.75
5014 5850 1.465777 GCTTGCAAAAATGGGATGTGC 59.534 47.619 0.00 0.00 35.75 4.57
5169 6040 1.611673 GCCTTAAGAAGCTGCTCCACA 60.612 52.381 1.00 0.00 0.00 4.17
5198 6069 7.598118 CAGTTGATACATCTGCCAGAGTTATAG 59.402 40.741 0.00 0.00 0.00 1.31
5274 6145 0.830444 AGGTAACACGGAGCTCACCA 60.830 55.000 17.19 0.00 41.41 4.17
5292 6163 7.390996 ACACATTAGGTATAGATGACTCGGTAG 59.609 40.741 0.00 0.00 0.00 3.18
5336 6208 2.288395 GCACAACAAAGGGGACTGAATG 60.288 50.000 0.00 0.00 42.68 2.67
5456 6328 4.277476 TGTGAAAAATGTGACCAGGTCTT 58.723 39.130 20.82 5.18 33.15 3.01
5458 6330 4.338118 TCTTGTGAAAAATGTGACCAGGTC 59.662 41.667 13.35 13.35 0.00 3.85
5459 6331 4.277476 TCTTGTGAAAAATGTGACCAGGT 58.723 39.130 0.00 0.00 0.00 4.00
5460 6332 4.916983 TCTTGTGAAAAATGTGACCAGG 57.083 40.909 0.00 0.00 0.00 4.45
5507 6385 8.287350 AGTTATCCCACAGTAGAGGAGTTAATA 58.713 37.037 0.00 0.00 31.94 0.98
5552 6430 3.680490 TGGATACATGTTTTGCGAGGAA 58.320 40.909 2.30 0.00 46.17 3.36
5553 6431 3.342377 TGGATACATGTTTTGCGAGGA 57.658 42.857 2.30 0.00 46.17 3.71
5579 6458 5.593909 TCTTGAGAACATCACACCAACAAAT 59.406 36.000 0.00 0.00 37.77 2.32
5582 6461 4.129380 CTCTTGAGAACATCACACCAACA 58.871 43.478 0.00 0.00 37.77 3.33
5584 6463 4.687901 TCTCTTGAGAACATCACACCAA 57.312 40.909 0.00 0.00 37.77 3.67
5601 6483 8.762645 TCACTGAATTTACAGGAACATATCTCT 58.237 33.333 0.00 0.00 41.59 3.10
5634 6516 3.173027 ACTGAAAGAGGGCCACCCATAT 61.173 50.000 6.18 0.00 42.03 1.78
5635 6517 1.839534 ACTGAAAGAGGGCCACCCATA 60.840 52.381 6.18 0.00 42.03 2.74
5651 6533 2.583441 CCTTCCGGACTGCCACTGA 61.583 63.158 1.83 0.00 0.00 3.41
5653 6535 3.322466 CCCTTCCGGACTGCCACT 61.322 66.667 1.83 0.00 0.00 4.00
5697 6581 4.070009 ACTGGTTTCATCGACTTTAACCC 58.930 43.478 14.38 0.00 37.93 4.11
5709 6593 1.303317 GCCCCGACACTGGTTTCAT 60.303 57.895 0.00 0.00 0.00 2.57
5716 6600 0.606401 ATTTCTGTGCCCCGACACTG 60.606 55.000 5.10 4.78 41.30 3.66
5722 6662 3.694072 TCTTTATTCATTTCTGTGCCCCG 59.306 43.478 0.00 0.00 0.00 5.73
5789 6731 1.004679 CAAACCCCCTGTTGCATGC 60.005 57.895 11.82 11.82 37.23 4.06
5790 6732 1.004679 GCAAACCCCCTGTTGCATG 60.005 57.895 3.62 0.00 37.23 4.06
5791 6733 2.216331 GGCAAACCCCCTGTTGCAT 61.216 57.895 10.24 0.00 37.23 3.96
5793 6735 2.524148 AGGCAAACCCCCTGTTGC 60.524 61.111 0.00 0.00 37.23 4.17
5803 6745 0.250338 AACTCAGGACGGAGGCAAAC 60.250 55.000 4.58 0.00 39.27 2.93
5882 7360 2.477375 TGCTTATTTCCGTCGACACAAC 59.523 45.455 17.16 0.00 0.00 3.32
5899 7377 1.021968 GTGGTTTCTTCGGTGTGCTT 58.978 50.000 0.00 0.00 0.00 3.91
5901 7379 0.586802 GAGTGGTTTCTTCGGTGTGC 59.413 55.000 0.00 0.00 0.00 4.57
5902 7380 0.859232 CGAGTGGTTTCTTCGGTGTG 59.141 55.000 0.00 0.00 0.00 3.82
5903 7381 0.249741 CCGAGTGGTTTCTTCGGTGT 60.250 55.000 4.11 0.00 38.94 4.16
5904 7382 1.566018 GCCGAGTGGTTTCTTCGGTG 61.566 60.000 12.96 0.00 44.82 4.94
5905 7383 1.301479 GCCGAGTGGTTTCTTCGGT 60.301 57.895 12.96 0.00 44.82 4.69
5906 7384 0.602905 AAGCCGAGTGGTTTCTTCGG 60.603 55.000 7.72 7.72 45.67 4.30
5907 7385 2.074547 TAAGCCGAGTGGTTTCTTCG 57.925 50.000 0.00 0.00 39.64 3.79
5921 7534 2.565841 CACAACCTGCTCCTATAAGCC 58.434 52.381 0.00 0.00 41.77 4.35
5951 7564 3.838903 ACCCTAGAACAAATCTCGGAACT 59.161 43.478 0.00 0.00 42.35 3.01
5971 7588 0.179018 AAGCCACACTCCAGTTCACC 60.179 55.000 0.00 0.00 0.00 4.02
5975 7592 0.034059 CGAGAAGCCACACTCCAGTT 59.966 55.000 0.00 0.00 0.00 3.16
5978 7595 0.468226 AAACGAGAAGCCACACTCCA 59.532 50.000 0.00 0.00 0.00 3.86
5983 7600 0.032952 AGCGTAAACGAGAAGCCACA 59.967 50.000 6.71 0.00 43.02 4.17
6033 7650 2.999739 TTTTCCTCGACGCACACCCC 63.000 60.000 0.00 0.00 0.00 4.95
6047 7664 1.070134 GCCCCCTGTTTTCAGTTTTCC 59.930 52.381 0.00 0.00 45.68 3.13
6049 7666 2.039418 GAGCCCCCTGTTTTCAGTTTT 58.961 47.619 0.00 0.00 45.68 2.43
6083 7700 2.203084 TGCACTGAAACGCCGGAA 60.203 55.556 5.05 0.00 0.00 4.30
6092 7709 1.133181 TGGGGGTCATCTGCACTGAA 61.133 55.000 0.00 0.00 0.00 3.02
6105 7722 0.324275 CGTTCCAATTCCATGGGGGT 60.324 55.000 13.02 0.00 41.05 4.95
6243 8073 1.313772 ATCAGTCGACCGATCAGAGG 58.686 55.000 13.01 0.00 0.00 3.69
6244 8074 2.095969 GCTATCAGTCGACCGATCAGAG 60.096 54.545 17.33 10.90 0.00 3.35
6286 8116 3.142951 CAACAACGTCCCTTGGTTATCA 58.857 45.455 0.00 0.00 0.00 2.15
6291 8121 2.943036 ATACAACAACGTCCCTTGGT 57.057 45.000 0.00 0.00 0.00 3.67
6301 8273 1.265635 TGCTGGTGCGAATACAACAAC 59.734 47.619 0.00 0.00 43.34 3.32
6320 8305 1.903877 ATCACTCCTGGCGAACCCTG 61.904 60.000 0.00 0.00 33.59 4.45
6394 8381 2.726691 GACGTCGACAACATGGCCG 61.727 63.158 17.16 0.08 0.00 6.13
6395 8382 3.165498 GACGTCGACAACATGGCC 58.835 61.111 17.16 0.00 0.00 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.