Multiple sequence alignment - TraesCS3A01G107300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G107300 chr3A 100.000 2546 0 0 1 2546 71803051 71800506 0.000000e+00 4702.0
1 TraesCS3A01G107300 chr6A 98.536 1912 28 0 635 2546 6329903 6331814 0.000000e+00 3376.0
2 TraesCS3A01G107300 chr6A 83.483 557 89 3 1870 2424 1653874 1653319 1.350000e-142 516.0
3 TraesCS3A01G107300 chr3B 96.974 1917 50 3 637 2546 60508817 60506902 0.000000e+00 3212.0
4 TraesCS3A01G107300 chr3B 85.788 584 31 24 28 574 101802533 101801965 2.840000e-159 571.0
5 TraesCS3A01G107300 chr2B 92.863 1135 73 5 636 1766 676570761 676571891 0.000000e+00 1640.0
6 TraesCS3A01G107300 chr2B 93.472 965 51 7 637 1593 300261949 300262909 0.000000e+00 1423.0
7 TraesCS3A01G107300 chr2B 94.744 704 36 1 1776 2478 676572010 676572713 0.000000e+00 1094.0
8 TraesCS3A01G107300 chr3D 92.863 1135 70 6 637 1764 14412850 14411720 0.000000e+00 1637.0
9 TraesCS3A01G107300 chr3D 94.413 698 37 2 1783 2478 14411590 14410893 0.000000e+00 1072.0
10 TraesCS3A01G107300 chr3D 81.117 609 40 18 8 576 63010120 63009547 3.920000e-113 418.0
11 TraesCS3A01G107300 chr3D 100.000 31 0 0 2516 2546 14410881 14410851 9.840000e-05 58.4
12 TraesCS3A01G107300 chr7B 91.695 1168 54 17 636 1760 186594990 186593823 0.000000e+00 1580.0
13 TraesCS3A01G107300 chr4A 94.099 966 47 6 634 1593 668446368 668447329 0.000000e+00 1459.0
14 TraesCS3A01G107300 chr4A 88.395 810 63 19 999 1806 20269808 20270588 0.000000e+00 946.0
15 TraesCS3A01G107300 chr1B 94.031 955 46 8 827 1777 529514837 529513890 0.000000e+00 1437.0
16 TraesCS3A01G107300 chr1B 95.556 225 10 0 2254 2478 529513758 529513534 6.700000e-96 361.0
17 TraesCS3A01G107300 chr5D 94.879 703 36 0 1776 2478 475822887 475822185 0.000000e+00 1099.0
18 TraesCS3A01G107300 chr5D 94.310 703 39 1 1776 2478 408255605 408254904 0.000000e+00 1075.0
19 TraesCS3A01G107300 chr5D 100.000 31 0 0 2516 2546 408254892 408254862 9.840000e-05 58.4
20 TraesCS3A01G107300 chr5D 100.000 31 0 0 2516 2546 475822173 475822143 9.840000e-05 58.4
21 TraesCS3A01G107300 chr6D 94.737 703 37 0 1776 2478 289730328 289731030 0.000000e+00 1094.0
22 TraesCS3A01G107300 chr6D 90.086 696 42 9 1001 1686 289729471 289730149 0.000000e+00 878.0
23 TraesCS3A01G107300 chr6D 100.000 31 0 0 2516 2546 289731042 289731072 9.840000e-05 58.4
24 TraesCS3A01G107300 chr1D 94.310 703 40 0 1776 2478 445368344 445369046 0.000000e+00 1077.0
25 TraesCS3A01G107300 chr1D 85.075 335 33 10 637 955 445367167 445367500 2.440000e-85 326.0
26 TraesCS3A01G107300 chr1D 100.000 31 0 0 2516 2546 445369058 445369088 9.840000e-05 58.4
27 TraesCS3A01G107300 chr2A 92.450 755 44 11 1728 2478 70036340 70037085 0.000000e+00 1066.0
28 TraesCS3A01G107300 chr2A 85.799 338 26 8 636 955 70033414 70033747 3.140000e-89 339.0
29 TraesCS3A01G107300 chr2D 83.184 559 90 2 1870 2424 119011269 119011827 2.260000e-140 508.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G107300 chr3A 71800506 71803051 2545 True 4702.000000 4702 100.000000 1 2546 1 chr3A.!!$R1 2545
1 TraesCS3A01G107300 chr6A 6329903 6331814 1911 False 3376.000000 3376 98.536000 635 2546 1 chr6A.!!$F1 1911
2 TraesCS3A01G107300 chr6A 1653319 1653874 555 True 516.000000 516 83.483000 1870 2424 1 chr6A.!!$R1 554
3 TraesCS3A01G107300 chr3B 60506902 60508817 1915 True 3212.000000 3212 96.974000 637 2546 1 chr3B.!!$R1 1909
4 TraesCS3A01G107300 chr3B 101801965 101802533 568 True 571.000000 571 85.788000 28 574 1 chr3B.!!$R2 546
5 TraesCS3A01G107300 chr2B 300261949 300262909 960 False 1423.000000 1423 93.472000 637 1593 1 chr2B.!!$F1 956
6 TraesCS3A01G107300 chr2B 676570761 676572713 1952 False 1367.000000 1640 93.803500 636 2478 2 chr2B.!!$F2 1842
7 TraesCS3A01G107300 chr3D 14410851 14412850 1999 True 922.466667 1637 95.758667 637 2546 3 chr3D.!!$R2 1909
8 TraesCS3A01G107300 chr3D 63009547 63010120 573 True 418.000000 418 81.117000 8 576 1 chr3D.!!$R1 568
9 TraesCS3A01G107300 chr7B 186593823 186594990 1167 True 1580.000000 1580 91.695000 636 1760 1 chr7B.!!$R1 1124
10 TraesCS3A01G107300 chr4A 668446368 668447329 961 False 1459.000000 1459 94.099000 634 1593 1 chr4A.!!$F2 959
11 TraesCS3A01G107300 chr4A 20269808 20270588 780 False 946.000000 946 88.395000 999 1806 1 chr4A.!!$F1 807
12 TraesCS3A01G107300 chr1B 529513534 529514837 1303 True 899.000000 1437 94.793500 827 2478 2 chr1B.!!$R1 1651
13 TraesCS3A01G107300 chr5D 475822143 475822887 744 True 578.700000 1099 97.439500 1776 2546 2 chr5D.!!$R2 770
14 TraesCS3A01G107300 chr5D 408254862 408255605 743 True 566.700000 1075 97.155000 1776 2546 2 chr5D.!!$R1 770
15 TraesCS3A01G107300 chr6D 289729471 289731072 1601 False 676.800000 1094 94.941000 1001 2546 3 chr6D.!!$F1 1545
16 TraesCS3A01G107300 chr1D 445367167 445369088 1921 False 487.133333 1077 93.128333 637 2546 3 chr1D.!!$F1 1909
17 TraesCS3A01G107300 chr2A 70033414 70037085 3671 False 702.500000 1066 89.124500 636 2478 2 chr2A.!!$F1 1842
18 TraesCS3A01G107300 chr2D 119011269 119011827 558 False 508.000000 508 83.184000 1870 2424 1 chr2D.!!$F1 554

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
627 628 0.025001 CGCGCAAGAACTACCGATTG 59.975 55.0 8.75 0.0 43.02 2.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1990 3980 0.109689 GCAGCAGCAGAAGCAAAGAG 60.11 55.0 0.0 0.0 45.49 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 3.465742 TCGTCGCCATCTACTACTACT 57.534 47.619 0.00 0.00 0.00 2.57
36 37 4.928615 GTCGCCATCTACTACTACTACGAT 59.071 45.833 0.00 0.00 0.00 3.73
47 48 3.499048 ACTACTACGATGTTTGCAGTCG 58.501 45.455 10.11 10.11 40.91 4.18
51 52 2.433868 ACGATGTTTGCAGTCGTACT 57.566 45.000 14.12 0.00 45.64 2.73
128 129 2.076863 CGAAACCGAGGAATGAAAGCT 58.923 47.619 0.00 0.00 0.00 3.74
132 133 1.065854 ACCGAGGAATGAAAGCTGGAG 60.066 52.381 0.00 0.00 0.00 3.86
133 134 1.208052 CCGAGGAATGAAAGCTGGAGA 59.792 52.381 0.00 0.00 0.00 3.71
134 135 2.355108 CCGAGGAATGAAAGCTGGAGAA 60.355 50.000 0.00 0.00 0.00 2.87
135 136 2.935201 CGAGGAATGAAAGCTGGAGAAG 59.065 50.000 0.00 0.00 0.00 2.85
136 137 3.277715 GAGGAATGAAAGCTGGAGAAGG 58.722 50.000 0.00 0.00 0.00 3.46
137 138 2.915604 AGGAATGAAAGCTGGAGAAGGA 59.084 45.455 0.00 0.00 0.00 3.36
138 139 3.331889 AGGAATGAAAGCTGGAGAAGGAA 59.668 43.478 0.00 0.00 0.00 3.36
139 140 3.441922 GGAATGAAAGCTGGAGAAGGAAC 59.558 47.826 0.00 0.00 0.00 3.62
140 141 3.795688 ATGAAAGCTGGAGAAGGAACA 57.204 42.857 0.00 0.00 0.00 3.18
141 142 3.131709 TGAAAGCTGGAGAAGGAACAG 57.868 47.619 0.00 0.00 35.40 3.16
142 143 2.705658 TGAAAGCTGGAGAAGGAACAGA 59.294 45.455 0.00 0.00 34.21 3.41
143 144 3.244353 TGAAAGCTGGAGAAGGAACAGAG 60.244 47.826 0.00 0.00 34.21 3.35
144 145 1.274712 AGCTGGAGAAGGAACAGAGG 58.725 55.000 0.00 0.00 34.21 3.69
145 146 0.251634 GCTGGAGAAGGAACAGAGGG 59.748 60.000 0.00 0.00 34.21 4.30
146 147 0.908198 CTGGAGAAGGAACAGAGGGG 59.092 60.000 0.00 0.00 34.21 4.79
147 148 0.547712 TGGAGAAGGAACAGAGGGGG 60.548 60.000 0.00 0.00 0.00 5.40
148 149 1.604915 GAGAAGGAACAGAGGGGGC 59.395 63.158 0.00 0.00 0.00 5.80
149 150 2.245438 GAGAAGGAACAGAGGGGGCG 62.245 65.000 0.00 0.00 0.00 6.13
150 151 3.330720 AAGGAACAGAGGGGGCGG 61.331 66.667 0.00 0.00 0.00 6.13
151 152 3.864983 AAGGAACAGAGGGGGCGGA 62.865 63.158 0.00 0.00 0.00 5.54
152 153 3.327404 GGAACAGAGGGGGCGGAA 61.327 66.667 0.00 0.00 0.00 4.30
153 154 2.269241 GAACAGAGGGGGCGGAAG 59.731 66.667 0.00 0.00 0.00 3.46
154 155 3.330720 AACAGAGGGGGCGGAAGG 61.331 66.667 0.00 0.00 0.00 3.46
155 156 3.864983 AACAGAGGGGGCGGAAGGA 62.865 63.158 0.00 0.00 0.00 3.36
156 157 3.009115 CAGAGGGGGCGGAAGGAA 61.009 66.667 0.00 0.00 0.00 3.36
157 158 2.204090 AGAGGGGGCGGAAGGAAA 60.204 61.111 0.00 0.00 0.00 3.13
158 159 1.850755 AGAGGGGGCGGAAGGAAAA 60.851 57.895 0.00 0.00 0.00 2.29
159 160 1.378646 GAGGGGGCGGAAGGAAAAG 60.379 63.158 0.00 0.00 0.00 2.27
160 161 1.848886 GAGGGGGCGGAAGGAAAAGA 61.849 60.000 0.00 0.00 0.00 2.52
161 162 1.076014 GGGGGCGGAAGGAAAAGAA 59.924 57.895 0.00 0.00 0.00 2.52
162 163 0.965866 GGGGGCGGAAGGAAAAGAAG 60.966 60.000 0.00 0.00 0.00 2.85
163 164 0.037734 GGGGCGGAAGGAAAAGAAGA 59.962 55.000 0.00 0.00 0.00 2.87
164 165 1.341089 GGGGCGGAAGGAAAAGAAGAT 60.341 52.381 0.00 0.00 0.00 2.40
165 166 2.092592 GGGGCGGAAGGAAAAGAAGATA 60.093 50.000 0.00 0.00 0.00 1.98
166 167 2.943690 GGGCGGAAGGAAAAGAAGATAC 59.056 50.000 0.00 0.00 0.00 2.24
167 168 3.606687 GGCGGAAGGAAAAGAAGATACA 58.393 45.455 0.00 0.00 0.00 2.29
168 169 4.007659 GGCGGAAGGAAAAGAAGATACAA 58.992 43.478 0.00 0.00 0.00 2.41
169 170 4.095036 GGCGGAAGGAAAAGAAGATACAAG 59.905 45.833 0.00 0.00 0.00 3.16
170 171 4.935808 GCGGAAGGAAAAGAAGATACAAGA 59.064 41.667 0.00 0.00 0.00 3.02
171 172 5.411669 GCGGAAGGAAAAGAAGATACAAGAA 59.588 40.000 0.00 0.00 0.00 2.52
172 173 6.402658 GCGGAAGGAAAAGAAGATACAAGAAG 60.403 42.308 0.00 0.00 0.00 2.85
173 174 6.092807 CGGAAGGAAAAGAAGATACAAGAAGG 59.907 42.308 0.00 0.00 0.00 3.46
174 175 6.127869 GGAAGGAAAAGAAGATACAAGAAGGC 60.128 42.308 0.00 0.00 0.00 4.35
175 176 6.133253 AGGAAAAGAAGATACAAGAAGGCT 57.867 37.500 0.00 0.00 0.00 4.58
176 177 6.176896 AGGAAAAGAAGATACAAGAAGGCTC 58.823 40.000 0.00 0.00 0.00 4.70
177 178 6.012945 AGGAAAAGAAGATACAAGAAGGCTCT 60.013 38.462 0.00 0.00 0.00 4.09
178 179 6.093357 GGAAAAGAAGATACAAGAAGGCTCTG 59.907 42.308 0.00 0.00 30.03 3.35
179 180 4.135747 AGAAGATACAAGAAGGCTCTGC 57.864 45.455 0.00 0.00 30.03 4.26
195 196 4.828925 GCCTCTGGCCGCTGTCTC 62.829 72.222 0.00 0.00 44.06 3.36
196 197 4.504916 CCTCTGGCCGCTGTCTCG 62.505 72.222 0.00 0.00 0.00 4.04
197 198 3.753434 CTCTGGCCGCTGTCTCGT 61.753 66.667 0.00 0.00 0.00 4.18
198 199 2.360726 TCTGGCCGCTGTCTCGTA 60.361 61.111 0.00 0.00 0.00 3.43
199 200 2.103143 CTGGCCGCTGTCTCGTAG 59.897 66.667 0.00 0.00 0.00 3.51
200 201 2.360726 TGGCCGCTGTCTCGTAGA 60.361 61.111 0.00 0.00 0.00 2.59
201 202 1.934220 CTGGCCGCTGTCTCGTAGAA 61.934 60.000 0.00 0.00 34.09 2.10
202 203 1.516603 GGCCGCTGTCTCGTAGAAC 60.517 63.158 0.00 0.00 34.09 3.01
203 204 1.516603 GCCGCTGTCTCGTAGAACC 60.517 63.158 0.00 0.00 34.09 3.62
204 205 1.226323 CCGCTGTCTCGTAGAACCG 60.226 63.158 0.00 0.00 34.09 4.44
205 206 1.226323 CGCTGTCTCGTAGAACCGG 60.226 63.158 0.00 0.00 34.09 5.28
206 207 1.642037 CGCTGTCTCGTAGAACCGGA 61.642 60.000 9.46 0.00 34.09 5.14
207 208 0.179169 GCTGTCTCGTAGAACCGGAC 60.179 60.000 9.46 0.99 34.09 4.79
208 209 1.162698 CTGTCTCGTAGAACCGGACA 58.837 55.000 9.46 0.00 36.43 4.02
209 210 1.130749 CTGTCTCGTAGAACCGGACAG 59.869 57.143 9.46 3.75 43.14 3.51
210 211 4.078342 CTGTCTCGTAGAACCGGACAGG 62.078 59.091 9.46 0.00 43.94 4.00
211 212 1.139095 CTCGTAGAACCGGACAGGC 59.861 63.158 9.46 0.00 46.52 4.85
212 213 2.183555 CGTAGAACCGGACAGGCC 59.816 66.667 9.46 0.00 46.52 5.19
213 214 2.348888 CGTAGAACCGGACAGGCCT 61.349 63.158 9.46 0.00 46.52 5.19
214 215 1.516423 GTAGAACCGGACAGGCCTC 59.484 63.158 9.46 0.00 46.52 4.70
215 216 2.050350 TAGAACCGGACAGGCCTCG 61.050 63.158 9.46 3.15 46.52 4.63
216 217 4.452733 GAACCGGACAGGCCTCGG 62.453 72.222 25.51 25.51 46.52 4.63
228 229 3.839432 CCTCGGGGCTTCCTCGAC 61.839 72.222 3.36 0.00 32.57 4.20
229 230 3.839432 CTCGGGGCTTCCTCGACC 61.839 72.222 3.36 0.00 32.57 4.79
230 231 4.689549 TCGGGGCTTCCTCGACCA 62.690 66.667 3.36 0.00 31.91 4.02
231 232 4.452733 CGGGGCTTCCTCGACCAC 62.453 72.222 0.00 0.00 31.91 4.16
232 233 3.319198 GGGGCTTCCTCGACCACA 61.319 66.667 0.00 0.00 31.91 4.17
233 234 2.047179 GGGCTTCCTCGACCACAC 60.047 66.667 0.00 0.00 30.13 3.82
234 235 2.432628 GGCTTCCTCGACCACACG 60.433 66.667 0.00 0.00 0.00 4.49
235 236 2.649034 GCTTCCTCGACCACACGA 59.351 61.111 0.00 0.00 40.00 4.35
236 237 1.215647 GCTTCCTCGACCACACGAT 59.784 57.895 0.00 0.00 41.39 3.73
237 238 1.078759 GCTTCCTCGACCACACGATG 61.079 60.000 0.00 0.00 41.39 3.84
238 239 1.078759 CTTCCTCGACCACACGATGC 61.079 60.000 0.00 0.00 41.39 3.91
239 240 1.811645 TTCCTCGACCACACGATGCA 61.812 55.000 0.00 0.00 41.39 3.96
240 241 1.374125 CCTCGACCACACGATGCAA 60.374 57.895 0.00 0.00 41.39 4.08
241 242 0.948623 CCTCGACCACACGATGCAAA 60.949 55.000 0.00 0.00 41.39 3.68
242 243 0.865111 CTCGACCACACGATGCAAAA 59.135 50.000 0.00 0.00 41.39 2.44
243 244 0.865111 TCGACCACACGATGCAAAAG 59.135 50.000 0.00 0.00 37.37 2.27
244 245 0.586319 CGACCACACGATGCAAAAGT 59.414 50.000 0.00 0.00 35.09 2.66
245 246 1.398451 CGACCACACGATGCAAAAGTC 60.398 52.381 0.00 0.00 35.09 3.01
246 247 0.586319 ACCACACGATGCAAAAGTCG 59.414 50.000 5.91 5.91 43.13 4.18
247 248 0.725784 CCACACGATGCAAAAGTCGC 60.726 55.000 7.32 0.00 41.31 5.19
248 249 0.725784 CACACGATGCAAAAGTCGCC 60.726 55.000 7.32 0.00 41.31 5.54
249 250 1.163420 ACACGATGCAAAAGTCGCCA 61.163 50.000 7.32 0.00 41.31 5.69
250 251 0.040514 CACGATGCAAAAGTCGCCAA 60.041 50.000 7.32 0.00 41.31 4.52
251 252 0.238289 ACGATGCAAAAGTCGCCAAG 59.762 50.000 7.32 0.00 41.31 3.61
252 253 0.454957 CGATGCAAAAGTCGCCAAGG 60.455 55.000 0.00 0.00 0.00 3.61
253 254 0.881118 GATGCAAAAGTCGCCAAGGA 59.119 50.000 0.00 0.00 0.00 3.36
254 255 0.598065 ATGCAAAAGTCGCCAAGGAC 59.402 50.000 0.00 0.00 37.19 3.85
255 256 1.082104 GCAAAAGTCGCCAAGGACG 60.082 57.895 0.00 0.00 41.81 4.79
256 257 1.082104 CAAAAGTCGCCAAGGACGC 60.082 57.895 0.00 0.00 41.81 5.19
257 258 2.258726 AAAAGTCGCCAAGGACGCC 61.259 57.895 0.00 0.00 41.81 5.68
258 259 4.699522 AAGTCGCCAAGGACGCCC 62.700 66.667 0.00 0.00 41.81 6.13
294 295 2.363795 CGAGGCCCCACTCCAGTA 60.364 66.667 0.00 0.00 33.93 2.74
295 296 2.722201 CGAGGCCCCACTCCAGTAC 61.722 68.421 0.00 0.00 33.93 2.73
296 297 1.306226 GAGGCCCCACTCCAGTACT 60.306 63.158 0.00 0.00 0.00 2.73
297 298 1.613630 AGGCCCCACTCCAGTACTG 60.614 63.158 16.34 16.34 0.00 2.74
298 299 2.269241 GCCCCACTCCAGTACTGC 59.731 66.667 17.86 0.00 0.00 4.40
299 300 2.294078 GCCCCACTCCAGTACTGCT 61.294 63.158 17.86 0.00 0.00 4.24
300 301 1.599047 CCCCACTCCAGTACTGCTG 59.401 63.158 17.86 13.58 44.63 4.41
301 302 1.078848 CCCACTCCAGTACTGCTGC 60.079 63.158 17.86 0.00 43.71 5.25
302 303 1.548357 CCCACTCCAGTACTGCTGCT 61.548 60.000 17.86 0.00 43.71 4.24
303 304 0.108424 CCACTCCAGTACTGCTGCTC 60.108 60.000 17.86 0.00 43.71 4.26
304 305 0.108424 CACTCCAGTACTGCTGCTCC 60.108 60.000 17.86 0.00 43.71 4.70
305 306 0.542938 ACTCCAGTACTGCTGCTCCA 60.543 55.000 17.86 0.00 43.71 3.86
306 307 0.829333 CTCCAGTACTGCTGCTCCAT 59.171 55.000 17.86 0.00 43.71 3.41
307 308 0.538584 TCCAGTACTGCTGCTCCATG 59.461 55.000 17.86 0.54 43.71 3.66
308 309 1.094073 CCAGTACTGCTGCTCCATGC 61.094 60.000 17.86 0.00 43.71 4.06
309 310 1.094073 CAGTACTGCTGCTCCATGCC 61.094 60.000 10.54 0.00 42.00 4.40
310 311 1.078214 GTACTGCTGCTCCATGCCA 60.078 57.895 0.00 0.00 42.00 4.92
311 312 1.094073 GTACTGCTGCTCCATGCCAG 61.094 60.000 0.00 0.00 42.00 4.85
312 313 2.261430 TACTGCTGCTCCATGCCAGG 62.261 60.000 0.00 0.00 42.00 4.45
315 316 4.435970 CTGCTCCATGCCAGGCCA 62.436 66.667 9.64 0.00 42.00 5.36
316 317 4.435970 TGCTCCATGCCAGGCCAG 62.436 66.667 9.64 0.00 42.00 4.85
338 339 2.885113 GGCCAAGCCGAACCAATC 59.115 61.111 0.00 0.00 39.62 2.67
339 340 2.710902 GGCCAAGCCGAACCAATCC 61.711 63.158 0.00 0.00 39.62 3.01
340 341 3.051392 GCCAAGCCGAACCAATCCG 62.051 63.158 0.00 0.00 0.00 4.18
341 342 1.376683 CCAAGCCGAACCAATCCGA 60.377 57.895 0.00 0.00 0.00 4.55
342 343 0.748005 CCAAGCCGAACCAATCCGAT 60.748 55.000 0.00 0.00 0.00 4.18
343 344 0.657840 CAAGCCGAACCAATCCGATC 59.342 55.000 0.00 0.00 0.00 3.69
344 345 0.810031 AAGCCGAACCAATCCGATCG 60.810 55.000 8.51 8.51 35.19 3.69
345 346 1.227147 GCCGAACCAATCCGATCGA 60.227 57.895 18.66 2.91 37.48 3.59
346 347 0.600255 GCCGAACCAATCCGATCGAT 60.600 55.000 18.66 0.00 37.48 3.59
347 348 1.419374 CCGAACCAATCCGATCGATC 58.581 55.000 18.66 15.68 37.48 3.69
357 358 3.094058 GATCGATCGAGTGCCGCG 61.094 66.667 23.84 0.00 38.37 6.46
379 380 4.821589 GCGGGGCGAGTGAGGAAG 62.822 72.222 0.00 0.00 0.00 3.46
380 381 3.068691 CGGGGCGAGTGAGGAAGA 61.069 66.667 0.00 0.00 0.00 2.87
381 382 2.896443 GGGGCGAGTGAGGAAGAG 59.104 66.667 0.00 0.00 0.00 2.85
382 383 1.985116 GGGGCGAGTGAGGAAGAGT 60.985 63.158 0.00 0.00 0.00 3.24
383 384 1.513622 GGGCGAGTGAGGAAGAGTC 59.486 63.158 0.00 0.00 0.00 3.36
384 385 1.137825 GGCGAGTGAGGAAGAGTCG 59.862 63.158 0.00 0.00 38.94 4.18
385 386 4.775746 CGAGTGAGGAAGAGTCGC 57.224 61.111 0.00 0.00 30.07 5.19
386 387 1.137825 CGAGTGAGGAAGAGTCGCC 59.862 63.158 0.00 0.00 30.07 5.54
387 388 1.137825 GAGTGAGGAAGAGTCGCCG 59.862 63.158 0.25 0.00 0.00 6.46
388 389 2.507324 GTGAGGAAGAGTCGCCGC 60.507 66.667 2.66 2.66 0.00 6.53
389 390 4.116328 TGAGGAAGAGTCGCCGCG 62.116 66.667 6.39 6.39 0.00 6.46
405 406 4.498520 CGCCCATCACGTCGCTCT 62.499 66.667 0.00 0.00 0.00 4.09
406 407 2.583593 GCCCATCACGTCGCTCTC 60.584 66.667 0.00 0.00 0.00 3.20
407 408 2.105128 CCCATCACGTCGCTCTCC 59.895 66.667 0.00 0.00 0.00 3.71
408 409 2.278206 CCATCACGTCGCTCTCCG 60.278 66.667 0.00 0.00 38.61 4.63
409 410 2.278206 CATCACGTCGCTCTCCGG 60.278 66.667 0.00 0.00 37.59 5.14
410 411 4.194720 ATCACGTCGCTCTCCGGC 62.195 66.667 0.00 0.00 38.43 6.13
412 413 4.838486 CACGTCGCTCTCCGGCTC 62.838 72.222 0.00 0.00 40.00 4.70
432 433 4.344865 GACACGCCACCACCCCAT 62.345 66.667 0.00 0.00 0.00 4.00
433 434 4.344865 ACACGCCACCACCCCATC 62.345 66.667 0.00 0.00 0.00 3.51
434 435 4.343323 CACGCCACCACCCCATCA 62.343 66.667 0.00 0.00 0.00 3.07
435 436 3.338250 ACGCCACCACCCCATCAT 61.338 61.111 0.00 0.00 0.00 2.45
436 437 2.044053 CGCCACCACCCCATCATT 60.044 61.111 0.00 0.00 0.00 2.57
437 438 2.120909 CGCCACCACCCCATCATTC 61.121 63.158 0.00 0.00 0.00 2.67
438 439 1.758122 GCCACCACCCCATCATTCC 60.758 63.158 0.00 0.00 0.00 3.01
439 440 1.696686 CCACCACCCCATCATTCCA 59.303 57.895 0.00 0.00 0.00 3.53
440 441 0.684153 CCACCACCCCATCATTCCAC 60.684 60.000 0.00 0.00 0.00 4.02
441 442 0.684153 CACCACCCCATCATTCCACC 60.684 60.000 0.00 0.00 0.00 4.61
442 443 0.850883 ACCACCCCATCATTCCACCT 60.851 55.000 0.00 0.00 0.00 4.00
443 444 0.106519 CCACCCCATCATTCCACCTC 60.107 60.000 0.00 0.00 0.00 3.85
444 445 0.106519 CACCCCATCATTCCACCTCC 60.107 60.000 0.00 0.00 0.00 4.30
445 446 0.253820 ACCCCATCATTCCACCTCCT 60.254 55.000 0.00 0.00 0.00 3.69
446 447 0.475906 CCCCATCATTCCACCTCCTC 59.524 60.000 0.00 0.00 0.00 3.71
447 448 0.475906 CCCATCATTCCACCTCCTCC 59.524 60.000 0.00 0.00 0.00 4.30
448 449 0.475906 CCATCATTCCACCTCCTCCC 59.524 60.000 0.00 0.00 0.00 4.30
449 450 0.475906 CATCATTCCACCTCCTCCCC 59.524 60.000 0.00 0.00 0.00 4.81
450 451 0.348370 ATCATTCCACCTCCTCCCCT 59.652 55.000 0.00 0.00 0.00 4.79
451 452 0.326618 TCATTCCACCTCCTCCCCTC 60.327 60.000 0.00 0.00 0.00 4.30
452 453 0.327000 CATTCCACCTCCTCCCCTCT 60.327 60.000 0.00 0.00 0.00 3.69
453 454 0.327000 ATTCCACCTCCTCCCCTCTG 60.327 60.000 0.00 0.00 0.00 3.35
454 455 1.452226 TTCCACCTCCTCCCCTCTGA 61.452 60.000 0.00 0.00 0.00 3.27
455 456 1.231751 TCCACCTCCTCCCCTCTGAT 61.232 60.000 0.00 0.00 0.00 2.90
456 457 1.053264 CCACCTCCTCCCCTCTGATG 61.053 65.000 0.00 0.00 0.00 3.07
457 458 1.053264 CACCTCCTCCCCTCTGATGG 61.053 65.000 0.00 0.00 0.00 3.51
458 459 2.146061 CCTCCTCCCCTCTGATGGC 61.146 68.421 0.00 0.00 0.00 4.40
459 460 2.444706 TCCTCCCCTCTGATGGCG 60.445 66.667 0.00 0.00 0.00 5.69
460 461 4.247380 CCTCCCCTCTGATGGCGC 62.247 72.222 0.00 0.00 0.00 6.53
461 462 3.160047 CTCCCCTCTGATGGCGCT 61.160 66.667 7.64 0.00 0.00 5.92
462 463 1.834378 CTCCCCTCTGATGGCGCTA 60.834 63.158 7.64 0.00 0.00 4.26
463 464 1.814772 CTCCCCTCTGATGGCGCTAG 61.815 65.000 7.64 0.98 0.00 3.42
464 465 1.834378 CCCCTCTGATGGCGCTAGA 60.834 63.158 7.64 5.72 0.00 2.43
465 466 1.190833 CCCCTCTGATGGCGCTAGAT 61.191 60.000 7.64 0.00 0.00 1.98
466 467 0.246086 CCCTCTGATGGCGCTAGATC 59.754 60.000 7.64 7.50 0.00 2.75
467 468 1.255882 CCTCTGATGGCGCTAGATCT 58.744 55.000 7.64 0.00 0.00 2.75
468 469 1.202114 CCTCTGATGGCGCTAGATCTC 59.798 57.143 7.64 0.00 0.00 2.75
469 470 1.202114 CTCTGATGGCGCTAGATCTCC 59.798 57.143 7.64 0.00 0.00 3.71
470 471 0.109365 CTGATGGCGCTAGATCTCCG 60.109 60.000 7.64 4.81 0.00 4.63
471 472 0.537371 TGATGGCGCTAGATCTCCGA 60.537 55.000 17.02 0.95 0.00 4.55
472 473 0.170116 GATGGCGCTAGATCTCCGAG 59.830 60.000 17.02 3.56 0.00 4.63
473 474 0.250945 ATGGCGCTAGATCTCCGAGA 60.251 55.000 17.02 0.00 0.00 4.04
474 475 0.250945 TGGCGCTAGATCTCCGAGAT 60.251 55.000 10.83 10.83 37.73 2.75
475 476 0.885196 GGCGCTAGATCTCCGAGATT 59.115 55.000 12.26 5.55 34.53 2.40
476 477 1.271102 GGCGCTAGATCTCCGAGATTT 59.729 52.381 12.26 9.29 34.53 2.17
477 478 2.323959 GCGCTAGATCTCCGAGATTTG 58.676 52.381 12.26 7.01 34.53 2.32
478 479 2.924454 GCGCTAGATCTCCGAGATTTGG 60.924 54.545 12.26 9.74 34.53 3.28
479 480 2.352225 CGCTAGATCTCCGAGATTTGGG 60.352 54.545 12.26 9.67 34.53 4.12
480 481 2.028567 GCTAGATCTCCGAGATTTGGGG 60.029 54.545 12.26 3.90 34.53 4.96
481 482 2.182516 AGATCTCCGAGATTTGGGGT 57.817 50.000 12.26 0.00 34.53 4.95
482 483 1.765314 AGATCTCCGAGATTTGGGGTG 59.235 52.381 12.26 0.00 34.53 4.61
483 484 0.839946 ATCTCCGAGATTTGGGGTGG 59.160 55.000 4.96 0.00 28.69 4.61
484 485 0.546747 TCTCCGAGATTTGGGGTGGT 60.547 55.000 0.00 0.00 0.00 4.16
485 486 0.392998 CTCCGAGATTTGGGGTGGTG 60.393 60.000 0.00 0.00 0.00 4.17
486 487 1.378514 CCGAGATTTGGGGTGGTGG 60.379 63.158 0.00 0.00 0.00 4.61
487 488 2.046285 CGAGATTTGGGGTGGTGGC 61.046 63.158 0.00 0.00 0.00 5.01
488 489 2.035626 AGATTTGGGGTGGTGGCG 59.964 61.111 0.00 0.00 0.00 5.69
489 490 3.758931 GATTTGGGGTGGTGGCGC 61.759 66.667 0.00 0.00 0.00 6.53
496 497 3.799755 GGTGGTGGCGCGACATTC 61.800 66.667 22.20 15.21 0.00 2.67
497 498 3.799755 GTGGTGGCGCGACATTCC 61.800 66.667 22.20 17.68 0.00 3.01
498 499 4.015406 TGGTGGCGCGACATTCCT 62.015 61.111 22.20 0.00 0.00 3.36
499 500 3.195698 GGTGGCGCGACATTCCTC 61.196 66.667 22.20 3.83 0.00 3.71
500 501 3.195698 GTGGCGCGACATTCCTCC 61.196 66.667 22.20 0.00 0.00 4.30
501 502 4.812476 TGGCGCGACATTCCTCCG 62.812 66.667 12.71 0.00 0.00 4.63
506 507 4.547367 CGACATTCCTCCGGCCCC 62.547 72.222 0.00 0.00 0.00 5.80
507 508 4.547367 GACATTCCTCCGGCCCCG 62.547 72.222 0.00 0.00 39.44 5.73
522 523 3.518998 CCGGTCCAGTCGCTCGAT 61.519 66.667 0.00 0.00 0.00 3.59
523 524 2.024871 CGGTCCAGTCGCTCGATC 59.975 66.667 0.00 0.00 0.00 3.69
524 525 2.761195 CGGTCCAGTCGCTCGATCA 61.761 63.158 0.00 0.00 0.00 2.92
525 526 1.226717 GGTCCAGTCGCTCGATCAC 60.227 63.158 0.00 0.00 0.00 3.06
526 527 1.658686 GGTCCAGTCGCTCGATCACT 61.659 60.000 0.00 0.00 0.00 3.41
527 528 0.248296 GTCCAGTCGCTCGATCACTC 60.248 60.000 0.00 0.00 0.00 3.51
528 529 1.064946 CCAGTCGCTCGATCACTCC 59.935 63.158 0.00 0.00 0.00 3.85
529 530 1.297967 CAGTCGCTCGATCACTCCG 60.298 63.158 0.00 0.00 0.00 4.63
530 531 1.449778 AGTCGCTCGATCACTCCGA 60.450 57.895 0.00 0.00 34.61 4.55
531 532 1.297745 GTCGCTCGATCACTCCGAC 60.298 63.158 8.68 8.68 40.92 4.79
532 533 1.449778 TCGCTCGATCACTCCGACT 60.450 57.895 0.00 0.00 32.18 4.18
533 534 1.010574 CGCTCGATCACTCCGACTC 60.011 63.158 0.00 0.00 32.18 3.36
534 535 1.357334 GCTCGATCACTCCGACTCC 59.643 63.158 0.00 0.00 32.18 3.85
535 536 1.644372 CTCGATCACTCCGACTCCG 59.356 63.158 0.00 0.00 32.18 4.63
536 537 2.024871 CGATCACTCCGACTCCGC 59.975 66.667 0.00 0.00 0.00 5.54
537 538 2.473760 CGATCACTCCGACTCCGCT 61.474 63.158 0.00 0.00 0.00 5.52
538 539 1.158484 CGATCACTCCGACTCCGCTA 61.158 60.000 0.00 0.00 0.00 4.26
539 540 0.308376 GATCACTCCGACTCCGCTAC 59.692 60.000 0.00 0.00 0.00 3.58
540 541 1.437772 ATCACTCCGACTCCGCTACG 61.438 60.000 0.00 0.00 0.00 3.51
541 542 2.046507 ACTCCGACTCCGCTACGT 60.047 61.111 0.00 0.00 0.00 3.57
542 543 2.105466 ACTCCGACTCCGCTACGTC 61.105 63.158 0.00 0.00 0.00 4.34
545 546 2.021106 CGACTCCGCTACGTCGTC 59.979 66.667 0.00 0.00 45.64 4.20
546 547 2.021106 GACTCCGCTACGTCGTCG 59.979 66.667 0.00 0.00 43.34 5.12
567 568 2.738147 GGAGACGAACACATGTCCG 58.262 57.895 0.00 2.63 35.71 4.79
568 569 0.736325 GGAGACGAACACATGTCCGG 60.736 60.000 13.94 0.00 35.71 5.14
569 570 1.352156 GAGACGAACACATGTCCGGC 61.352 60.000 13.94 11.64 35.71 6.13
570 571 1.666553 GACGAACACATGTCCGGCA 60.667 57.895 11.47 0.00 0.00 5.69
571 572 1.225376 GACGAACACATGTCCGGCAA 61.225 55.000 11.47 0.00 0.00 4.52
572 573 1.227999 ACGAACACATGTCCGGCAAG 61.228 55.000 13.94 0.00 0.00 4.01
573 574 1.875963 GAACACATGTCCGGCAAGG 59.124 57.895 0.00 0.00 42.97 3.61
585 586 4.778415 GCAAGGAGCGACGCGAGA 62.778 66.667 15.93 0.00 0.00 4.04
586 587 2.126463 CAAGGAGCGACGCGAGAA 60.126 61.111 15.93 0.00 0.00 2.87
587 588 2.155194 CAAGGAGCGACGCGAGAAG 61.155 63.158 15.93 1.28 0.00 2.85
588 589 2.333417 AAGGAGCGACGCGAGAAGA 61.333 57.895 15.93 0.00 0.00 2.87
589 590 2.259875 AAGGAGCGACGCGAGAAGAG 62.260 60.000 15.93 0.00 0.00 2.85
590 591 2.277628 GAGCGACGCGAGAAGAGG 60.278 66.667 15.93 0.00 0.00 3.69
591 592 3.041627 GAGCGACGCGAGAAGAGGT 62.042 63.158 15.93 2.12 0.00 3.85
592 593 2.577378 GCGACGCGAGAAGAGGTC 60.577 66.667 15.93 0.00 0.00 3.85
593 594 2.100603 CGACGCGAGAAGAGGTCC 59.899 66.667 15.93 0.00 0.00 4.46
594 595 2.100603 GACGCGAGAAGAGGTCCG 59.899 66.667 15.93 0.00 0.00 4.79
595 596 3.398353 GACGCGAGAAGAGGTCCGG 62.398 68.421 15.93 0.00 0.00 5.14
596 597 3.132139 CGCGAGAAGAGGTCCGGA 61.132 66.667 0.00 0.00 0.00 5.14
597 598 2.482333 CGCGAGAAGAGGTCCGGAT 61.482 63.158 7.81 0.00 0.00 4.18
598 599 1.360911 GCGAGAAGAGGTCCGGATC 59.639 63.158 7.81 7.19 0.00 3.36
599 600 1.384989 GCGAGAAGAGGTCCGGATCA 61.385 60.000 19.03 0.00 0.00 2.92
600 601 1.103803 CGAGAAGAGGTCCGGATCAA 58.896 55.000 19.03 0.00 0.00 2.57
601 602 1.066303 CGAGAAGAGGTCCGGATCAAG 59.934 57.143 19.03 0.04 0.00 3.02
602 603 0.827368 AGAAGAGGTCCGGATCAAGC 59.173 55.000 19.03 5.78 0.00 4.01
603 604 0.827368 GAAGAGGTCCGGATCAAGCT 59.173 55.000 19.03 8.25 0.00 3.74
604 605 0.827368 AAGAGGTCCGGATCAAGCTC 59.173 55.000 19.03 14.49 39.69 4.09
605 606 1.066587 GAGGTCCGGATCAAGCTCG 59.933 63.158 19.03 0.00 31.15 5.03
606 607 2.107141 GGTCCGGATCAAGCTCGG 59.893 66.667 10.69 4.47 44.59 4.63
607 608 2.722201 GGTCCGGATCAAGCTCGGT 61.722 63.158 10.69 0.00 43.75 4.69
608 609 1.227002 GTCCGGATCAAGCTCGGTC 60.227 63.158 7.81 1.91 43.75 4.79
609 610 2.278857 CCGGATCAAGCTCGGTCG 60.279 66.667 0.00 0.00 39.04 4.79
610 611 2.956964 CGGATCAAGCTCGGTCGC 60.957 66.667 0.00 0.00 0.00 5.19
611 612 2.956964 GGATCAAGCTCGGTCGCG 60.957 66.667 0.00 0.00 34.40 5.87
612 613 3.621394 GATCAAGCTCGGTCGCGC 61.621 66.667 0.00 0.00 34.40 6.86
613 614 4.435436 ATCAAGCTCGGTCGCGCA 62.435 61.111 8.75 0.00 34.40 6.09
614 615 3.932580 ATCAAGCTCGGTCGCGCAA 62.933 57.895 8.75 0.00 34.40 4.85
615 616 4.139420 CAAGCTCGGTCGCGCAAG 62.139 66.667 8.75 0.00 43.44 4.01
616 617 4.357947 AAGCTCGGTCGCGCAAGA 62.358 61.111 8.75 0.00 43.02 3.02
617 618 3.858868 AAGCTCGGTCGCGCAAGAA 62.859 57.895 8.75 0.00 43.02 2.52
618 619 4.135493 GCTCGGTCGCGCAAGAAC 62.135 66.667 8.75 0.00 43.02 3.01
619 620 2.430921 CTCGGTCGCGCAAGAACT 60.431 61.111 8.75 0.00 43.02 3.01
620 621 1.154093 CTCGGTCGCGCAAGAACTA 60.154 57.895 8.75 0.00 43.02 2.24
621 622 1.403972 CTCGGTCGCGCAAGAACTAC 61.404 60.000 8.75 0.00 43.02 2.73
622 623 2.442188 CGGTCGCGCAAGAACTACC 61.442 63.158 8.75 0.00 43.02 3.18
623 624 2.442188 GGTCGCGCAAGAACTACCG 61.442 63.158 8.75 0.00 43.02 4.02
624 625 1.443194 GTCGCGCAAGAACTACCGA 60.443 57.895 8.75 0.00 43.02 4.69
625 626 0.801067 GTCGCGCAAGAACTACCGAT 60.801 55.000 8.75 0.00 43.02 4.18
626 627 0.108992 TCGCGCAAGAACTACCGATT 60.109 50.000 8.75 0.00 43.02 3.34
627 628 0.025001 CGCGCAAGAACTACCGATTG 59.975 55.000 8.75 0.00 43.02 2.67
628 629 1.355971 GCGCAAGAACTACCGATTGA 58.644 50.000 0.30 0.00 43.02 2.57
629 630 1.730064 GCGCAAGAACTACCGATTGAA 59.270 47.619 0.30 0.00 43.02 2.69
630 631 2.351726 GCGCAAGAACTACCGATTGAAT 59.648 45.455 0.30 0.00 43.02 2.57
631 632 3.544244 GCGCAAGAACTACCGATTGAATC 60.544 47.826 0.30 0.00 43.02 2.52
632 633 3.865745 CGCAAGAACTACCGATTGAATCT 59.134 43.478 3.43 0.00 43.02 2.40
633 634 5.041287 CGCAAGAACTACCGATTGAATCTA 58.959 41.667 3.43 0.00 43.02 1.98
683 684 4.608948 ACTTGACTCTAGGGTTCACTTG 57.391 45.455 0.00 0.00 0.00 3.16
937 974 0.917259 CTTCTCGCTCGAATCCAACG 59.083 55.000 0.00 0.00 0.00 4.10
1169 1207 9.653287 TCATAAGGTTAGTACAAGAACATTGAG 57.347 33.333 12.58 7.28 32.37 3.02
1195 1233 4.530094 TGTTGTTGTTAACTCTGCTTCG 57.470 40.909 7.22 0.00 0.00 3.79
1363 1404 7.496346 AGAGGTGAATCTGTGGATAGTAAAA 57.504 36.000 0.00 0.00 0.00 1.52
1610 1660 9.944663 GTAGACTTTTGTATTGTTTGATGTGAA 57.055 29.630 0.00 0.00 0.00 3.18
1760 3634 5.000591 TGACTGTTGAACACTGACAAGAAA 58.999 37.500 0.00 0.00 0.00 2.52
1794 3779 4.867047 ACTGAACTGAACATTCATAGCTCG 59.133 41.667 0.00 0.00 35.57 5.03
1898 3883 8.506168 TGGAAAGTACTTGATCCATTACATTC 57.494 34.615 20.51 5.90 37.05 2.67
2046 4036 0.987294 CCCTCTTCTTTGCCTCCAGA 59.013 55.000 0.00 0.00 0.00 3.86
2048 4038 2.224867 CCCTCTTCTTTGCCTCCAGAAA 60.225 50.000 0.00 0.00 0.00 2.52
2276 4269 3.308705 GGCTTGCTGCTTGGCCTT 61.309 61.111 18.38 0.00 41.20 4.35
2328 4352 4.551702 TCCTAATCTTGTTGCAGTGCTA 57.448 40.909 17.60 5.78 0.00 3.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.875908 TGGCGACGATTCATAGCAGC 60.876 55.000 0.00 0.00 0.00 5.25
2 3 1.341209 AGATGGCGACGATTCATAGCA 59.659 47.619 0.00 0.00 0.00 3.49
3 4 2.071688 AGATGGCGACGATTCATAGC 57.928 50.000 0.00 0.00 0.00 2.97
4 5 4.427096 AGTAGATGGCGACGATTCATAG 57.573 45.455 0.00 0.00 0.00 2.23
5 6 5.001874 AGTAGTAGATGGCGACGATTCATA 58.998 41.667 0.00 0.00 0.00 2.15
6 7 3.821600 AGTAGTAGATGGCGACGATTCAT 59.178 43.478 0.00 0.00 0.00 2.57
31 32 3.058085 TCAGTACGACTGCAAACATCGTA 60.058 43.478 14.58 14.58 46.63 3.43
36 37 1.497991 GCTCAGTACGACTGCAAACA 58.502 50.000 9.34 0.00 45.54 2.83
47 48 1.153745 CACCAGCCTCGCTCAGTAC 60.154 63.158 0.00 0.00 36.40 2.73
71 72 1.154543 AAAAATCGTTCCGTCGCGC 60.155 52.632 0.00 0.00 0.00 6.86
91 92 4.083749 GGTTTCGAGCTCCTTCTTTTTCTC 60.084 45.833 8.47 0.00 0.00 2.87
128 129 0.547712 CCCCCTCTGTTCCTTCTCCA 60.548 60.000 0.00 0.00 0.00 3.86
132 133 2.269241 CGCCCCCTCTGTTCCTTC 59.731 66.667 0.00 0.00 0.00 3.46
133 134 3.330720 CCGCCCCCTCTGTTCCTT 61.331 66.667 0.00 0.00 0.00 3.36
134 135 3.864983 TTCCGCCCCCTCTGTTCCT 62.865 63.158 0.00 0.00 0.00 3.36
135 136 3.327404 TTCCGCCCCCTCTGTTCC 61.327 66.667 0.00 0.00 0.00 3.62
136 137 2.269241 CTTCCGCCCCCTCTGTTC 59.731 66.667 0.00 0.00 0.00 3.18
137 138 3.330720 CCTTCCGCCCCCTCTGTT 61.331 66.667 0.00 0.00 0.00 3.16
138 139 3.864983 TTCCTTCCGCCCCCTCTGT 62.865 63.158 0.00 0.00 0.00 3.41
139 140 2.137177 TTTTCCTTCCGCCCCCTCTG 62.137 60.000 0.00 0.00 0.00 3.35
140 141 1.850755 TTTTCCTTCCGCCCCCTCT 60.851 57.895 0.00 0.00 0.00 3.69
141 142 1.378646 CTTTTCCTTCCGCCCCCTC 60.379 63.158 0.00 0.00 0.00 4.30
142 143 1.432023 TTCTTTTCCTTCCGCCCCCT 61.432 55.000 0.00 0.00 0.00 4.79
143 144 0.965866 CTTCTTTTCCTTCCGCCCCC 60.966 60.000 0.00 0.00 0.00 5.40
144 145 0.037734 TCTTCTTTTCCTTCCGCCCC 59.962 55.000 0.00 0.00 0.00 5.80
145 146 2.130272 ATCTTCTTTTCCTTCCGCCC 57.870 50.000 0.00 0.00 0.00 6.13
146 147 3.606687 TGTATCTTCTTTTCCTTCCGCC 58.393 45.455 0.00 0.00 0.00 6.13
147 148 4.935808 TCTTGTATCTTCTTTTCCTTCCGC 59.064 41.667 0.00 0.00 0.00 5.54
148 149 6.092807 CCTTCTTGTATCTTCTTTTCCTTCCG 59.907 42.308 0.00 0.00 0.00 4.30
149 150 6.127869 GCCTTCTTGTATCTTCTTTTCCTTCC 60.128 42.308 0.00 0.00 0.00 3.46
150 151 6.657117 AGCCTTCTTGTATCTTCTTTTCCTTC 59.343 38.462 0.00 0.00 0.00 3.46
151 152 6.547402 AGCCTTCTTGTATCTTCTTTTCCTT 58.453 36.000 0.00 0.00 0.00 3.36
152 153 6.012945 AGAGCCTTCTTGTATCTTCTTTTCCT 60.013 38.462 0.00 0.00 0.00 3.36
153 154 6.093357 CAGAGCCTTCTTGTATCTTCTTTTCC 59.907 42.308 0.00 0.00 0.00 3.13
154 155 6.403092 GCAGAGCCTTCTTGTATCTTCTTTTC 60.403 42.308 0.00 0.00 0.00 2.29
155 156 5.414144 GCAGAGCCTTCTTGTATCTTCTTTT 59.586 40.000 0.00 0.00 0.00 2.27
156 157 4.940654 GCAGAGCCTTCTTGTATCTTCTTT 59.059 41.667 0.00 0.00 0.00 2.52
157 158 4.512484 GCAGAGCCTTCTTGTATCTTCTT 58.488 43.478 0.00 0.00 0.00 2.52
158 159 3.118445 GGCAGAGCCTTCTTGTATCTTCT 60.118 47.826 0.00 0.00 46.69 2.85
159 160 3.202097 GGCAGAGCCTTCTTGTATCTTC 58.798 50.000 0.00 0.00 46.69 2.87
160 161 3.274095 GGCAGAGCCTTCTTGTATCTT 57.726 47.619 0.00 0.00 46.69 2.40
161 162 2.998316 GGCAGAGCCTTCTTGTATCT 57.002 50.000 0.00 0.00 46.69 1.98
179 180 4.504916 CGAGACAGCGGCCAGAGG 62.505 72.222 2.24 0.00 0.00 3.69
180 181 2.329678 CTACGAGACAGCGGCCAGAG 62.330 65.000 2.24 0.00 35.12 3.35
181 182 2.360726 TACGAGACAGCGGCCAGA 60.361 61.111 2.24 0.00 35.12 3.86
182 183 1.934220 TTCTACGAGACAGCGGCCAG 61.934 60.000 2.24 0.00 35.12 4.85
183 184 1.974875 TTCTACGAGACAGCGGCCA 60.975 57.895 2.24 0.00 35.12 5.36
184 185 1.516603 GTTCTACGAGACAGCGGCC 60.517 63.158 0.00 0.00 35.12 6.13
185 186 1.516603 GGTTCTACGAGACAGCGGC 60.517 63.158 0.00 0.00 35.12 6.53
186 187 1.226323 CGGTTCTACGAGACAGCGG 60.226 63.158 0.00 0.00 35.47 5.52
187 188 1.226323 CCGGTTCTACGAGACAGCG 60.226 63.158 0.00 1.37 35.47 5.18
188 189 0.179169 GTCCGGTTCTACGAGACAGC 60.179 60.000 0.00 0.00 35.54 4.40
189 190 1.130749 CTGTCCGGTTCTACGAGACAG 59.869 57.143 16.51 16.51 45.77 3.51
190 191 1.162698 CTGTCCGGTTCTACGAGACA 58.837 55.000 0.00 0.00 39.73 3.41
191 192 0.450983 CCTGTCCGGTTCTACGAGAC 59.549 60.000 0.00 0.00 35.81 3.36
192 193 1.310933 GCCTGTCCGGTTCTACGAGA 61.311 60.000 0.00 0.00 35.47 4.04
193 194 1.139095 GCCTGTCCGGTTCTACGAG 59.861 63.158 0.00 0.00 35.47 4.18
194 195 2.345760 GGCCTGTCCGGTTCTACGA 61.346 63.158 0.00 0.00 35.47 3.43
195 196 2.183555 GGCCTGTCCGGTTCTACG 59.816 66.667 0.00 0.00 34.25 3.51
196 197 1.516423 GAGGCCTGTCCGGTTCTAC 59.484 63.158 12.00 0.00 40.77 2.59
197 198 2.050350 CGAGGCCTGTCCGGTTCTA 61.050 63.158 12.00 0.00 40.77 2.10
198 199 3.382832 CGAGGCCTGTCCGGTTCT 61.383 66.667 12.00 0.00 40.77 3.01
199 200 4.452733 CCGAGGCCTGTCCGGTTC 62.453 72.222 20.50 0.00 40.77 3.62
211 212 3.839432 GTCGAGGAAGCCCCGAGG 61.839 72.222 0.00 0.00 40.87 4.63
212 213 3.839432 GGTCGAGGAAGCCCCGAG 61.839 72.222 0.00 0.00 40.87 4.63
213 214 4.689549 TGGTCGAGGAAGCCCCGA 62.690 66.667 0.00 0.00 40.87 5.14
214 215 4.452733 GTGGTCGAGGAAGCCCCG 62.453 72.222 0.00 0.00 40.87 5.73
215 216 3.319198 TGTGGTCGAGGAAGCCCC 61.319 66.667 0.00 0.00 0.00 5.80
216 217 2.047179 GTGTGGTCGAGGAAGCCC 60.047 66.667 0.00 0.00 0.00 5.19
217 218 2.227089 ATCGTGTGGTCGAGGAAGCC 62.227 60.000 0.00 0.00 43.00 4.35
218 219 1.078759 CATCGTGTGGTCGAGGAAGC 61.079 60.000 0.00 0.00 42.85 3.86
219 220 1.078759 GCATCGTGTGGTCGAGGAAG 61.079 60.000 5.03 0.00 42.85 3.46
220 221 1.080093 GCATCGTGTGGTCGAGGAA 60.080 57.895 5.03 0.00 42.85 3.36
221 222 1.811645 TTGCATCGTGTGGTCGAGGA 61.812 55.000 5.03 0.00 42.85 3.71
222 223 0.948623 TTTGCATCGTGTGGTCGAGG 60.949 55.000 0.00 0.00 43.00 4.63
223 224 0.865111 TTTTGCATCGTGTGGTCGAG 59.135 50.000 0.00 0.00 43.00 4.04
224 225 0.865111 CTTTTGCATCGTGTGGTCGA 59.135 50.000 0.00 0.00 43.86 4.20
225 226 0.586319 ACTTTTGCATCGTGTGGTCG 59.414 50.000 0.00 0.00 0.00 4.79
226 227 1.398451 CGACTTTTGCATCGTGTGGTC 60.398 52.381 0.00 0.00 33.63 4.02
227 228 0.586319 CGACTTTTGCATCGTGTGGT 59.414 50.000 0.00 0.00 33.63 4.16
228 229 0.725784 GCGACTTTTGCATCGTGTGG 60.726 55.000 9.02 0.00 40.49 4.17
229 230 0.725784 GGCGACTTTTGCATCGTGTG 60.726 55.000 9.02 0.00 40.49 3.82
230 231 1.163420 TGGCGACTTTTGCATCGTGT 61.163 50.000 9.02 0.00 40.49 4.49
231 232 0.040514 TTGGCGACTTTTGCATCGTG 60.041 50.000 9.02 0.00 40.49 4.35
232 233 0.238289 CTTGGCGACTTTTGCATCGT 59.762 50.000 9.02 0.00 40.49 3.73
233 234 0.454957 CCTTGGCGACTTTTGCATCG 60.455 55.000 3.09 3.09 41.32 3.84
234 235 0.881118 TCCTTGGCGACTTTTGCATC 59.119 50.000 0.00 0.00 0.00 3.91
235 236 0.598065 GTCCTTGGCGACTTTTGCAT 59.402 50.000 0.00 0.00 0.00 3.96
236 237 1.781025 CGTCCTTGGCGACTTTTGCA 61.781 55.000 0.00 0.00 29.41 4.08
237 238 1.082104 CGTCCTTGGCGACTTTTGC 60.082 57.895 0.00 0.00 29.41 3.68
238 239 1.082104 GCGTCCTTGGCGACTTTTG 60.082 57.895 0.00 0.00 29.41 2.44
239 240 2.258726 GGCGTCCTTGGCGACTTTT 61.259 57.895 0.00 0.00 34.95 2.27
240 241 2.668550 GGCGTCCTTGGCGACTTT 60.669 61.111 0.00 0.00 34.95 2.66
241 242 4.699522 GGGCGTCCTTGGCGACTT 62.700 66.667 0.00 0.00 39.37 3.01
277 278 2.363795 TACTGGAGTGGGGCCTCG 60.364 66.667 0.84 0.00 31.98 4.63
278 279 1.306226 AGTACTGGAGTGGGGCCTC 60.306 63.158 0.84 0.00 0.00 4.70
279 280 1.613630 CAGTACTGGAGTGGGGCCT 60.614 63.158 15.49 0.00 0.00 5.19
280 281 2.990479 CAGTACTGGAGTGGGGCC 59.010 66.667 15.49 0.00 0.00 5.80
281 282 2.269241 GCAGTACTGGAGTGGGGC 59.731 66.667 23.95 3.37 0.00 5.80
282 283 1.599047 CAGCAGTACTGGAGTGGGG 59.401 63.158 23.95 0.00 43.19 4.96
291 292 4.950479 GCATGGAGCAGCAGTACT 57.050 55.556 0.00 0.00 44.79 2.73
321 322 2.710902 GGATTGGTTCGGCTTGGCC 61.711 63.158 0.00 0.00 46.75 5.36
322 323 2.885113 GGATTGGTTCGGCTTGGC 59.115 61.111 0.00 0.00 0.00 4.52
323 324 0.748005 ATCGGATTGGTTCGGCTTGG 60.748 55.000 0.00 0.00 0.00 3.61
324 325 0.657840 GATCGGATTGGTTCGGCTTG 59.342 55.000 0.00 0.00 0.00 4.01
325 326 0.810031 CGATCGGATTGGTTCGGCTT 60.810 55.000 7.38 0.00 0.00 4.35
326 327 1.227263 CGATCGGATTGGTTCGGCT 60.227 57.895 7.38 0.00 0.00 5.52
327 328 0.600255 ATCGATCGGATTGGTTCGGC 60.600 55.000 16.41 0.00 32.67 5.54
328 329 1.419374 GATCGATCGGATTGGTTCGG 58.581 55.000 16.41 0.00 34.82 4.30
329 330 1.053048 CGATCGATCGGATTGGTTCG 58.947 55.000 34.54 11.35 45.93 3.95
340 341 3.094058 CGCGGCACTCGATCGATC 61.094 66.667 19.78 15.68 39.83 3.69
362 363 4.821589 CTTCCTCACTCGCCCCGC 62.822 72.222 0.00 0.00 0.00 6.13
363 364 3.068691 TCTTCCTCACTCGCCCCG 61.069 66.667 0.00 0.00 0.00 5.73
364 365 1.950973 GACTCTTCCTCACTCGCCCC 61.951 65.000 0.00 0.00 0.00 5.80
365 366 1.513622 GACTCTTCCTCACTCGCCC 59.486 63.158 0.00 0.00 0.00 6.13
366 367 1.137825 CGACTCTTCCTCACTCGCC 59.862 63.158 0.00 0.00 0.00 5.54
367 368 1.515304 GCGACTCTTCCTCACTCGC 60.515 63.158 0.00 0.00 42.51 5.03
368 369 1.137825 GGCGACTCTTCCTCACTCG 59.862 63.158 0.00 0.00 0.00 4.18
369 370 1.137825 CGGCGACTCTTCCTCACTC 59.862 63.158 0.00 0.00 0.00 3.51
370 371 2.995872 GCGGCGACTCTTCCTCACT 61.996 63.158 12.98 0.00 0.00 3.41
371 372 2.507324 GCGGCGACTCTTCCTCAC 60.507 66.667 12.98 0.00 0.00 3.51
372 373 4.116328 CGCGGCGACTCTTCCTCA 62.116 66.667 19.16 0.00 0.00 3.86
388 389 4.498520 AGAGCGACGTGATGGGCG 62.499 66.667 0.00 0.00 0.00 6.13
389 390 2.583593 GAGAGCGACGTGATGGGC 60.584 66.667 0.00 0.00 0.00 5.36
390 391 2.105128 GGAGAGCGACGTGATGGG 59.895 66.667 0.00 0.00 0.00 4.00
391 392 2.278206 CGGAGAGCGACGTGATGG 60.278 66.667 0.00 0.00 0.00 3.51
392 393 2.278206 CCGGAGAGCGACGTGATG 60.278 66.667 0.00 0.00 0.00 3.07
393 394 4.194720 GCCGGAGAGCGACGTGAT 62.195 66.667 5.05 0.00 0.00 3.06
395 396 4.838486 GAGCCGGAGAGCGACGTG 62.838 72.222 5.05 0.00 38.01 4.49
415 416 4.344865 ATGGGGTGGTGGCGTGTC 62.345 66.667 0.00 0.00 0.00 3.67
416 417 4.344865 GATGGGGTGGTGGCGTGT 62.345 66.667 0.00 0.00 0.00 4.49
417 418 3.643595 ATGATGGGGTGGTGGCGTG 62.644 63.158 0.00 0.00 0.00 5.34
418 419 2.837031 GAATGATGGGGTGGTGGCGT 62.837 60.000 0.00 0.00 0.00 5.68
419 420 2.044053 AATGATGGGGTGGTGGCG 60.044 61.111 0.00 0.00 0.00 5.69
420 421 1.758122 GGAATGATGGGGTGGTGGC 60.758 63.158 0.00 0.00 0.00 5.01
421 422 0.684153 GTGGAATGATGGGGTGGTGG 60.684 60.000 0.00 0.00 0.00 4.61
422 423 0.684153 GGTGGAATGATGGGGTGGTG 60.684 60.000 0.00 0.00 0.00 4.17
423 424 0.850883 AGGTGGAATGATGGGGTGGT 60.851 55.000 0.00 0.00 0.00 4.16
424 425 0.106519 GAGGTGGAATGATGGGGTGG 60.107 60.000 0.00 0.00 0.00 4.61
425 426 0.106519 GGAGGTGGAATGATGGGGTG 60.107 60.000 0.00 0.00 0.00 4.61
426 427 0.253820 AGGAGGTGGAATGATGGGGT 60.254 55.000 0.00 0.00 0.00 4.95
427 428 0.475906 GAGGAGGTGGAATGATGGGG 59.524 60.000 0.00 0.00 0.00 4.96
428 429 0.475906 GGAGGAGGTGGAATGATGGG 59.524 60.000 0.00 0.00 0.00 4.00
429 430 0.475906 GGGAGGAGGTGGAATGATGG 59.524 60.000 0.00 0.00 0.00 3.51
430 431 0.475906 GGGGAGGAGGTGGAATGATG 59.524 60.000 0.00 0.00 0.00 3.07
431 432 0.348370 AGGGGAGGAGGTGGAATGAT 59.652 55.000 0.00 0.00 0.00 2.45
432 433 0.326618 GAGGGGAGGAGGTGGAATGA 60.327 60.000 0.00 0.00 0.00 2.57
433 434 0.327000 AGAGGGGAGGAGGTGGAATG 60.327 60.000 0.00 0.00 0.00 2.67
434 435 0.327000 CAGAGGGGAGGAGGTGGAAT 60.327 60.000 0.00 0.00 0.00 3.01
435 436 1.081092 CAGAGGGGAGGAGGTGGAA 59.919 63.158 0.00 0.00 0.00 3.53
436 437 1.231751 ATCAGAGGGGAGGAGGTGGA 61.232 60.000 0.00 0.00 0.00 4.02
437 438 1.053264 CATCAGAGGGGAGGAGGTGG 61.053 65.000 0.00 0.00 0.00 4.61
438 439 1.053264 CCATCAGAGGGGAGGAGGTG 61.053 65.000 0.00 0.00 0.00 4.00
439 440 1.316266 CCATCAGAGGGGAGGAGGT 59.684 63.158 0.00 0.00 0.00 3.85
440 441 2.146061 GCCATCAGAGGGGAGGAGG 61.146 68.421 2.61 0.00 0.00 4.30
441 442 2.506061 CGCCATCAGAGGGGAGGAG 61.506 68.421 2.61 0.00 43.81 3.69
442 443 2.444706 CGCCATCAGAGGGGAGGA 60.445 66.667 2.61 0.00 43.81 3.71
443 444 4.247380 GCGCCATCAGAGGGGAGG 62.247 72.222 2.61 0.00 43.81 4.30
444 445 1.814772 CTAGCGCCATCAGAGGGGAG 61.815 65.000 2.29 0.00 43.81 4.30
445 446 1.834378 CTAGCGCCATCAGAGGGGA 60.834 63.158 2.29 0.00 43.81 4.81
446 447 1.190833 ATCTAGCGCCATCAGAGGGG 61.191 60.000 2.29 1.21 43.92 4.79
447 448 0.246086 GATCTAGCGCCATCAGAGGG 59.754 60.000 2.29 0.00 0.00 4.30
448 449 1.202114 GAGATCTAGCGCCATCAGAGG 59.798 57.143 2.29 0.00 0.00 3.69
449 450 1.202114 GGAGATCTAGCGCCATCAGAG 59.798 57.143 2.29 0.00 0.00 3.35
450 451 1.252175 GGAGATCTAGCGCCATCAGA 58.748 55.000 2.29 1.93 0.00 3.27
451 452 0.109365 CGGAGATCTAGCGCCATCAG 60.109 60.000 2.29 0.00 0.00 2.90
452 453 0.537371 TCGGAGATCTAGCGCCATCA 60.537 55.000 2.29 0.00 0.00 3.07
453 454 0.170116 CTCGGAGATCTAGCGCCATC 59.830 60.000 2.29 3.31 33.89 3.51
454 455 0.250945 TCTCGGAGATCTAGCGCCAT 60.251 55.000 2.29 0.00 33.89 4.40
455 456 0.250945 ATCTCGGAGATCTAGCGCCA 60.251 55.000 14.68 0.00 33.89 5.69
456 457 0.885196 AATCTCGGAGATCTAGCGCC 59.115 55.000 20.15 0.00 32.89 6.53
457 458 2.323959 CAAATCTCGGAGATCTAGCGC 58.676 52.381 20.15 0.00 32.89 5.92
458 459 2.352225 CCCAAATCTCGGAGATCTAGCG 60.352 54.545 20.15 7.75 32.89 4.26
459 460 2.028567 CCCCAAATCTCGGAGATCTAGC 60.029 54.545 20.15 0.00 32.89 3.42
460 461 3.006323 CACCCCAAATCTCGGAGATCTAG 59.994 52.174 20.15 12.64 32.89 2.43
461 462 2.965831 CACCCCAAATCTCGGAGATCTA 59.034 50.000 20.15 0.00 32.89 1.98
462 463 1.765314 CACCCCAAATCTCGGAGATCT 59.235 52.381 20.15 4.33 32.89 2.75
463 464 1.202698 CCACCCCAAATCTCGGAGATC 60.203 57.143 20.15 0.00 32.89 2.75
464 465 0.839946 CCACCCCAAATCTCGGAGAT 59.160 55.000 14.68 14.68 36.28 2.75
465 466 0.546747 ACCACCCCAAATCTCGGAGA 60.547 55.000 10.62 10.62 0.00 3.71
466 467 0.392998 CACCACCCCAAATCTCGGAG 60.393 60.000 0.00 0.00 0.00 4.63
467 468 1.682849 CACCACCCCAAATCTCGGA 59.317 57.895 0.00 0.00 0.00 4.55
468 469 1.378514 CCACCACCCCAAATCTCGG 60.379 63.158 0.00 0.00 0.00 4.63
469 470 2.046285 GCCACCACCCCAAATCTCG 61.046 63.158 0.00 0.00 0.00 4.04
470 471 2.046285 CGCCACCACCCCAAATCTC 61.046 63.158 0.00 0.00 0.00 2.75
471 472 2.035626 CGCCACCACCCCAAATCT 59.964 61.111 0.00 0.00 0.00 2.40
472 473 3.758931 GCGCCACCACCCCAAATC 61.759 66.667 0.00 0.00 0.00 2.17
479 480 3.799755 GAATGTCGCGCCACCACC 61.800 66.667 0.00 0.00 0.00 4.61
480 481 3.799755 GGAATGTCGCGCCACCAC 61.800 66.667 0.00 0.00 0.00 4.16
481 482 3.950794 GAGGAATGTCGCGCCACCA 62.951 63.158 0.00 0.00 0.00 4.17
482 483 3.195698 GAGGAATGTCGCGCCACC 61.196 66.667 0.00 0.00 0.00 4.61
483 484 3.195698 GGAGGAATGTCGCGCCAC 61.196 66.667 0.00 0.00 0.00 5.01
484 485 4.812476 CGGAGGAATGTCGCGCCA 62.812 66.667 0.00 0.00 0.00 5.69
505 506 3.471244 GATCGAGCGACTGGACCGG 62.471 68.421 0.00 0.00 0.00 5.28
506 507 2.024871 GATCGAGCGACTGGACCG 59.975 66.667 0.00 0.00 0.00 4.79
507 508 1.226717 GTGATCGAGCGACTGGACC 60.227 63.158 0.00 0.00 0.00 4.46
508 509 0.248296 GAGTGATCGAGCGACTGGAC 60.248 60.000 9.86 0.00 0.00 4.02
509 510 1.377366 GGAGTGATCGAGCGACTGGA 61.377 60.000 9.86 0.00 0.00 3.86
510 511 1.064946 GGAGTGATCGAGCGACTGG 59.935 63.158 9.86 0.00 0.00 4.00
511 512 1.297967 CGGAGTGATCGAGCGACTG 60.298 63.158 9.86 0.00 0.00 3.51
512 513 1.449778 TCGGAGTGATCGAGCGACT 60.450 57.895 5.63 5.63 32.51 4.18
513 514 1.297745 GTCGGAGTGATCGAGCGAC 60.298 63.158 0.00 0.00 37.31 5.19
514 515 1.429927 GAGTCGGAGTGATCGAGCGA 61.430 60.000 0.00 0.00 37.31 4.93
515 516 1.010574 GAGTCGGAGTGATCGAGCG 60.011 63.158 0.00 0.00 37.31 5.03
516 517 1.357334 GGAGTCGGAGTGATCGAGC 59.643 63.158 0.00 0.00 37.31 5.03
517 518 1.644372 CGGAGTCGGAGTGATCGAG 59.356 63.158 0.00 0.00 37.31 4.04
518 519 2.470362 GCGGAGTCGGAGTGATCGA 61.470 63.158 1.18 0.00 36.79 3.59
519 520 1.158484 TAGCGGAGTCGGAGTGATCG 61.158 60.000 1.18 0.00 36.79 3.69
520 521 0.308376 GTAGCGGAGTCGGAGTGATC 59.692 60.000 1.18 0.00 36.79 2.92
521 522 1.437772 CGTAGCGGAGTCGGAGTGAT 61.438 60.000 1.18 0.00 36.79 3.06
522 523 2.104859 CGTAGCGGAGTCGGAGTGA 61.105 63.158 1.18 0.00 36.79 3.41
523 524 2.307137 GACGTAGCGGAGTCGGAGTG 62.307 65.000 1.18 0.00 36.79 3.51
524 525 2.046507 ACGTAGCGGAGTCGGAGT 60.047 61.111 1.18 0.00 36.79 3.85
525 526 2.708255 GACGTAGCGGAGTCGGAG 59.292 66.667 1.18 0.00 36.79 4.63
529 530 2.021106 CGACGACGTAGCGGAGTC 59.979 66.667 0.00 7.98 35.39 3.36
546 547 1.337821 GACATGTGTTCGTCTCCGAC 58.662 55.000 1.15 0.00 44.13 4.79
547 548 0.242825 GGACATGTGTTCGTCTCCGA 59.757 55.000 1.15 0.00 42.41 4.55
548 549 1.071019 CGGACATGTGTTCGTCTCCG 61.071 60.000 1.15 3.12 41.88 4.63
549 550 0.736325 CCGGACATGTGTTCGTCTCC 60.736 60.000 1.15 0.00 45.18 3.71
550 551 1.352156 GCCGGACATGTGTTCGTCTC 61.352 60.000 5.05 0.00 45.18 3.36
551 552 1.374252 GCCGGACATGTGTTCGTCT 60.374 57.895 5.05 0.00 45.18 4.18
552 553 1.225376 TTGCCGGACATGTGTTCGTC 61.225 55.000 5.05 0.45 45.18 4.20
553 554 1.227704 TTGCCGGACATGTGTTCGT 60.228 52.632 5.05 0.00 45.18 3.85
554 555 1.497278 CTTGCCGGACATGTGTTCG 59.503 57.895 5.05 6.85 46.16 3.95
555 556 0.605319 TCCTTGCCGGACATGTGTTC 60.605 55.000 5.05 0.00 36.69 3.18
556 557 0.606401 CTCCTTGCCGGACATGTGTT 60.606 55.000 5.05 0.00 36.69 3.32
557 558 1.003355 CTCCTTGCCGGACATGTGT 60.003 57.895 5.05 0.00 36.69 3.72
558 559 2.401766 GCTCCTTGCCGGACATGTG 61.402 63.158 5.05 0.00 36.69 3.21
559 560 2.045926 GCTCCTTGCCGGACATGT 60.046 61.111 5.05 0.00 36.69 3.21
560 561 3.197790 CGCTCCTTGCCGGACATG 61.198 66.667 5.05 5.18 36.69 3.21
561 562 3.390521 TCGCTCCTTGCCGGACAT 61.391 61.111 5.05 0.00 36.69 3.06
562 563 4.373116 GTCGCTCCTTGCCGGACA 62.373 66.667 5.05 0.00 36.69 4.02
568 569 4.778415 TCTCGCGTCGCTCCTTGC 62.778 66.667 16.36 0.00 38.57 4.01
569 570 2.126463 TTCTCGCGTCGCTCCTTG 60.126 61.111 16.36 0.00 0.00 3.61
570 571 2.179517 CTTCTCGCGTCGCTCCTT 59.820 61.111 16.36 0.00 0.00 3.36
571 572 2.746671 TCTTCTCGCGTCGCTCCT 60.747 61.111 16.36 0.00 0.00 3.69
572 573 2.277628 CTCTTCTCGCGTCGCTCC 60.278 66.667 16.36 0.00 0.00 4.70
573 574 2.277628 CCTCTTCTCGCGTCGCTC 60.278 66.667 16.36 0.00 0.00 5.03
574 575 3.041627 GACCTCTTCTCGCGTCGCT 62.042 63.158 16.36 0.00 0.00 4.93
575 576 2.577378 GACCTCTTCTCGCGTCGC 60.577 66.667 7.29 7.29 0.00 5.19
576 577 2.100603 GGACCTCTTCTCGCGTCG 59.899 66.667 5.77 0.00 0.00 5.12
577 578 2.100603 CGGACCTCTTCTCGCGTC 59.899 66.667 5.77 0.00 0.00 5.19
578 579 3.441290 CCGGACCTCTTCTCGCGT 61.441 66.667 5.77 0.00 0.00 6.01
579 580 2.395367 GATCCGGACCTCTTCTCGCG 62.395 65.000 6.12 0.00 0.00 5.87
580 581 1.360911 GATCCGGACCTCTTCTCGC 59.639 63.158 6.12 0.00 0.00 5.03
581 582 1.066303 CTTGATCCGGACCTCTTCTCG 59.934 57.143 6.12 0.00 0.00 4.04
582 583 1.202475 GCTTGATCCGGACCTCTTCTC 60.202 57.143 6.12 0.00 0.00 2.87
583 584 0.827368 GCTTGATCCGGACCTCTTCT 59.173 55.000 6.12 0.00 0.00 2.85
584 585 0.827368 AGCTTGATCCGGACCTCTTC 59.173 55.000 6.12 0.00 0.00 2.87
585 586 0.827368 GAGCTTGATCCGGACCTCTT 59.173 55.000 6.12 0.00 0.00 2.85
586 587 1.388065 CGAGCTTGATCCGGACCTCT 61.388 60.000 6.12 0.00 0.00 3.69
587 588 1.066587 CGAGCTTGATCCGGACCTC 59.933 63.158 6.12 1.03 0.00 3.85
588 589 2.427245 CCGAGCTTGATCCGGACCT 61.427 63.158 6.12 0.00 45.58 3.85
589 590 2.107141 CCGAGCTTGATCCGGACC 59.893 66.667 6.12 0.00 45.58 4.46
590 591 1.227002 GACCGAGCTTGATCCGGAC 60.227 63.158 16.85 7.57 45.58 4.79
591 592 2.771639 CGACCGAGCTTGATCCGGA 61.772 63.158 16.85 6.61 45.58 5.14
593 594 2.956964 GCGACCGAGCTTGATCCG 60.957 66.667 1.22 4.00 0.00 4.18
594 595 2.956964 CGCGACCGAGCTTGATCC 60.957 66.667 0.00 0.00 36.29 3.36
595 596 3.621394 GCGCGACCGAGCTTGATC 61.621 66.667 12.10 0.00 37.92 2.92
596 597 3.932580 TTGCGCGACCGAGCTTGAT 62.933 57.895 12.10 0.00 41.45 2.57
597 598 4.656117 TTGCGCGACCGAGCTTGA 62.656 61.111 12.10 3.16 41.45 3.02
598 599 4.139420 CTTGCGCGACCGAGCTTG 62.139 66.667 12.10 7.83 41.45 4.01
599 600 3.858868 TTCTTGCGCGACCGAGCTT 62.859 57.895 12.10 0.00 41.45 3.74
600 601 4.357947 TTCTTGCGCGACCGAGCT 62.358 61.111 12.10 0.00 41.45 4.09
601 602 4.135493 GTTCTTGCGCGACCGAGC 62.135 66.667 12.10 11.02 41.27 5.03
602 603 1.154093 TAGTTCTTGCGCGACCGAG 60.154 57.895 12.10 1.74 36.29 4.63
603 604 1.443194 GTAGTTCTTGCGCGACCGA 60.443 57.895 12.10 0.00 36.29 4.69
604 605 2.442188 GGTAGTTCTTGCGCGACCG 61.442 63.158 12.10 0.00 37.57 4.79
605 606 2.442188 CGGTAGTTCTTGCGCGACC 61.442 63.158 12.10 4.48 0.00 4.79
606 607 0.801067 ATCGGTAGTTCTTGCGCGAC 60.801 55.000 12.10 0.88 0.00 5.19
607 608 0.108992 AATCGGTAGTTCTTGCGCGA 60.109 50.000 12.10 0.00 0.00 5.87
608 609 0.025001 CAATCGGTAGTTCTTGCGCG 59.975 55.000 0.00 0.00 0.00 6.86
609 610 1.355971 TCAATCGGTAGTTCTTGCGC 58.644 50.000 0.00 0.00 0.00 6.09
610 611 3.865745 AGATTCAATCGGTAGTTCTTGCG 59.134 43.478 0.00 0.00 0.00 4.85
611 612 5.051641 CGTAGATTCAATCGGTAGTTCTTGC 60.052 44.000 0.00 0.00 0.00 4.01
612 613 5.459107 CCGTAGATTCAATCGGTAGTTCTTG 59.541 44.000 0.00 0.00 38.45 3.02
613 614 5.359009 TCCGTAGATTCAATCGGTAGTTCTT 59.641 40.000 11.69 0.00 42.95 2.52
614 615 4.885907 TCCGTAGATTCAATCGGTAGTTCT 59.114 41.667 11.69 0.00 42.95 3.01
615 616 5.008415 TCTCCGTAGATTCAATCGGTAGTTC 59.992 44.000 11.69 0.00 42.95 3.01
616 617 4.885907 TCTCCGTAGATTCAATCGGTAGTT 59.114 41.667 11.69 0.00 42.95 2.24
617 618 4.458397 TCTCCGTAGATTCAATCGGTAGT 58.542 43.478 11.69 0.00 42.95 2.73
618 619 5.434352 TTCTCCGTAGATTCAATCGGTAG 57.566 43.478 11.69 9.07 42.95 3.18
619 620 5.840243 TTTCTCCGTAGATTCAATCGGTA 57.160 39.130 11.69 2.89 42.95 4.02
620 621 4.730949 TTTCTCCGTAGATTCAATCGGT 57.269 40.909 11.69 0.00 42.95 4.69
621 622 6.604735 AATTTTCTCCGTAGATTCAATCGG 57.395 37.500 7.53 7.53 43.65 4.18
622 623 8.126871 TGTAATTTTCTCCGTAGATTCAATCG 57.873 34.615 0.00 0.00 0.00 3.34
624 625 9.838339 AGATGTAATTTTCTCCGTAGATTCAAT 57.162 29.630 0.00 0.00 0.00 2.57
626 627 9.745880 GTAGATGTAATTTTCTCCGTAGATTCA 57.254 33.333 0.00 0.00 0.00 2.57
627 628 9.745880 TGTAGATGTAATTTTCTCCGTAGATTC 57.254 33.333 0.00 0.00 0.00 2.52
628 629 9.751542 CTGTAGATGTAATTTTCTCCGTAGATT 57.248 33.333 0.00 0.00 0.00 2.40
629 630 8.915036 ACTGTAGATGTAATTTTCTCCGTAGAT 58.085 33.333 0.00 0.00 0.00 1.98
630 631 8.289939 ACTGTAGATGTAATTTTCTCCGTAGA 57.710 34.615 0.00 0.00 0.00 2.59
632 633 9.793252 GTTACTGTAGATGTAATTTTCTCCGTA 57.207 33.333 0.00 0.00 33.29 4.02
633 634 8.529476 AGTTACTGTAGATGTAATTTTCTCCGT 58.471 33.333 0.00 0.00 33.29 4.69
683 684 3.306166 CGATTTCGTGAATACAGTGACCC 59.694 47.826 0.00 0.00 34.11 4.46
937 974 0.678950 GAGGAGTAGAGGATGCAGCC 59.321 60.000 14.72 14.72 0.00 4.85
1088 1126 4.142381 GCTTTTCAGTTGTGGACTCAAACT 60.142 41.667 0.00 0.00 36.10 2.66
1169 1207 4.275936 AGCAGAGTTAACAACAACATCCAC 59.724 41.667 8.61 0.00 0.00 4.02
1195 1233 8.552083 ACCAATCTGGAAATAAATTGAAAAGC 57.448 30.769 0.00 0.00 40.96 3.51
1338 1379 7.496346 TTTACTATCCACAGATTCACCTCTT 57.504 36.000 0.00 0.00 33.67 2.85
1389 1430 3.081710 TCAGGATCCACTTCTGTCGTA 57.918 47.619 15.82 0.00 0.00 3.43
1528 1578 5.423610 ACAGCACTCACATCCTAACTAGAAT 59.576 40.000 0.00 0.00 0.00 2.40
1760 3634 9.209175 GAATGTTCAGTTCAGTACTTATGTTCT 57.791 33.333 0.00 0.00 33.85 3.01
1990 3980 0.109689 GCAGCAGCAGAAGCAAAGAG 60.110 55.000 0.00 0.00 45.49 2.85
2276 4269 4.159321 CAGCTAGAGTTGAAGTGATGAGGA 59.841 45.833 0.00 0.00 0.00 3.71
2328 4352 2.026915 TGCAATGTCATCTGTAGGCAGT 60.027 45.455 0.00 0.00 43.05 4.40
2342 4366 5.494724 TCAAAGAAGCTAGAGATGCAATGT 58.505 37.500 0.00 0.00 0.00 2.71
2386 4563 3.157087 GGAAAAGAAAGATGCCAGGACA 58.843 45.455 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.