Multiple sequence alignment - TraesCS3A01G107200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G107200 chr3A 100.000 3155 0 0 1 3155 71793158 71796312 0.000000e+00 5827
1 TraesCS3A01G107200 chr3A 80.781 333 48 15 1216 1537 749282526 749282853 2.430000e-61 246
2 TraesCS3A01G107200 chr3A 88.288 111 13 0 102 212 739292985 739292875 1.970000e-27 134
3 TraesCS3A01G107200 chr3A 83.871 124 17 3 87 210 675156043 675156163 7.150000e-22 115
4 TraesCS3A01G107200 chr3D 91.235 3012 126 55 211 3155 63006303 63009243 0.000000e+00 3973
5 TraesCS3A01G107200 chr3B 89.302 2449 134 47 216 2620 101798735 101801099 0.000000e+00 2953
6 TraesCS3A01G107200 chr3B 88.385 551 26 22 2622 3155 101801137 101801666 2.070000e-176 628
7 TraesCS3A01G107200 chr3B 79.472 341 56 13 1207 1537 822832876 822833212 2.450000e-56 230
8 TraesCS3A01G107200 chr1D 81.173 324 48 12 1222 1537 52576370 52576052 6.760000e-62 248
9 TraesCS3A01G107200 chr1A 81.173 324 48 11 1222 1537 52237545 52237227 6.760000e-62 248
10 TraesCS3A01G107200 chr1B 80.864 324 49 12 1222 1537 83640076 83639758 3.140000e-60 243
11 TraesCS3A01G107200 chr5B 87.821 156 12 3 1421 1573 243429413 243429262 3.230000e-40 176
12 TraesCS3A01G107200 chr4A 87.500 152 16 3 1421 1569 709223711 709223862 4.180000e-39 172
13 TraesCS3A01G107200 chr4A 85.217 115 16 1 95 209 625546199 625546312 1.990000e-22 117
14 TraesCS3A01G107200 chr5A 84.507 142 21 1 75 216 478013253 478013113 4.240000e-29 139
15 TraesCS3A01G107200 chr5A 86.842 114 15 0 103 216 383832235 383832122 9.190000e-26 128
16 TraesCS3A01G107200 chr2A 87.736 106 13 0 104 209 25336044 25335939 1.190000e-24 124
17 TraesCS3A01G107200 chr2A 86.607 112 14 1 98 209 120719859 120719749 4.270000e-24 122
18 TraesCS3A01G107200 chr2A 85.088 114 17 0 103 216 22592736 22592623 1.990000e-22 117
19 TraesCS3A01G107200 chr2D 84.252 127 17 3 90 214 638315902 638316027 1.540000e-23 121


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G107200 chr3A 71793158 71796312 3154 False 5827.0 5827 100.0000 1 3155 1 chr3A.!!$F1 3154
1 TraesCS3A01G107200 chr3D 63006303 63009243 2940 False 3973.0 3973 91.2350 211 3155 1 chr3D.!!$F1 2944
2 TraesCS3A01G107200 chr3B 101798735 101801666 2931 False 1790.5 2953 88.8435 216 3155 2 chr3B.!!$F2 2939

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
61 62 0.040781 CGTTGACGGCCGAACAAATT 60.041 50.0 35.90 7.12 35.37 1.82 F
64 65 0.250553 TGACGGCCGAACAAATTCCT 60.251 50.0 35.90 4.22 0.00 3.36 F
79 80 0.323633 TTCCTCCCCACACATGCATG 60.324 55.0 25.09 25.09 0.00 4.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2007 2085 1.990614 GGACTCCACCCTCTGGACC 60.991 68.421 0.00 0.00 44.99 4.46 R
2046 2124 2.259818 CTCAGCCGCTCGAACACT 59.740 61.111 0.00 0.00 0.00 3.55 R
2158 2236 2.904866 TTGCAAGAACGGCGGCTT 60.905 55.556 13.24 11.78 0.00 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 8.970691 TGGTTTTCGACAAGTACTACTATTAC 57.029 34.615 0.00 0.00 0.00 1.89
27 28 8.796475 TGGTTTTCGACAAGTACTACTATTACT 58.204 33.333 0.00 0.00 0.00 2.24
31 32 9.890629 TTTCGACAAGTACTACTATTACTAGGA 57.109 33.333 0.00 0.00 0.00 2.94
32 33 9.890629 TTCGACAAGTACTACTATTACTAGGAA 57.109 33.333 0.00 0.00 0.00 3.36
33 34 9.890629 TCGACAAGTACTACTATTACTAGGAAA 57.109 33.333 0.00 0.00 0.00 3.13
43 44 9.604626 CTACTATTACTAGGAAATTTACGGACG 57.395 37.037 0.00 0.00 0.00 4.79
44 45 8.000780 ACTATTACTAGGAAATTTACGGACGT 57.999 34.615 1.98 1.98 0.00 4.34
45 46 8.470002 ACTATTACTAGGAAATTTACGGACGTT 58.530 33.333 1.57 0.00 0.00 3.99
46 47 6.949578 TTACTAGGAAATTTACGGACGTTG 57.050 37.500 1.57 0.00 0.00 4.10
47 48 5.138125 ACTAGGAAATTTACGGACGTTGA 57.862 39.130 1.57 0.00 0.00 3.18
48 49 4.925646 ACTAGGAAATTTACGGACGTTGAC 59.074 41.667 1.57 0.00 0.00 3.18
49 50 2.733026 AGGAAATTTACGGACGTTGACG 59.267 45.455 1.57 1.41 46.33 4.35
50 51 2.159801 GGAAATTTACGGACGTTGACGG 60.160 50.000 1.57 0.00 44.95 4.79
57 58 2.659244 GACGTTGACGGCCGAACA 60.659 61.111 35.90 27.01 42.67 3.18
58 59 2.202905 ACGTTGACGGCCGAACAA 60.203 55.556 35.90 30.69 44.95 2.83
59 60 1.764180 GACGTTGACGGCCGAACAAA 61.764 55.000 35.90 16.88 42.67 2.83
60 61 1.161563 ACGTTGACGGCCGAACAAAT 61.162 50.000 35.90 22.66 44.95 2.32
61 62 0.040781 CGTTGACGGCCGAACAAATT 60.041 50.000 35.90 7.12 35.37 1.82
62 63 1.681825 GTTGACGGCCGAACAAATTC 58.318 50.000 35.90 17.86 0.00 2.17
63 64 0.594110 TTGACGGCCGAACAAATTCC 59.406 50.000 35.90 9.00 0.00 3.01
64 65 0.250553 TGACGGCCGAACAAATTCCT 60.251 50.000 35.90 4.22 0.00 3.36
65 66 0.446616 GACGGCCGAACAAATTCCTC 59.553 55.000 35.90 11.13 0.00 3.71
66 67 0.958876 ACGGCCGAACAAATTCCTCC 60.959 55.000 35.90 0.00 0.00 4.30
67 68 1.654023 CGGCCGAACAAATTCCTCCC 61.654 60.000 24.07 0.00 0.00 4.30
68 69 1.320344 GGCCGAACAAATTCCTCCCC 61.320 60.000 0.00 0.00 0.00 4.81
69 70 0.610785 GCCGAACAAATTCCTCCCCA 60.611 55.000 0.00 0.00 0.00 4.96
70 71 1.173913 CCGAACAAATTCCTCCCCAC 58.826 55.000 0.00 0.00 0.00 4.61
71 72 1.546773 CCGAACAAATTCCTCCCCACA 60.547 52.381 0.00 0.00 0.00 4.17
72 73 1.539827 CGAACAAATTCCTCCCCACAC 59.460 52.381 0.00 0.00 0.00 3.82
73 74 2.593026 GAACAAATTCCTCCCCACACA 58.407 47.619 0.00 0.00 0.00 3.72
74 75 2.999185 ACAAATTCCTCCCCACACAT 57.001 45.000 0.00 0.00 0.00 3.21
75 76 2.528564 ACAAATTCCTCCCCACACATG 58.471 47.619 0.00 0.00 0.00 3.21
76 77 1.205417 CAAATTCCTCCCCACACATGC 59.795 52.381 0.00 0.00 0.00 4.06
77 78 0.409092 AATTCCTCCCCACACATGCA 59.591 50.000 0.00 0.00 0.00 3.96
78 79 0.632835 ATTCCTCCCCACACATGCAT 59.367 50.000 0.00 0.00 0.00 3.96
79 80 0.323633 TTCCTCCCCACACATGCATG 60.324 55.000 25.09 25.09 0.00 4.06
80 81 2.420568 CCTCCCCACACATGCATGC 61.421 63.158 26.53 11.82 0.00 4.06
81 82 1.679641 CTCCCCACACATGCATGCA 60.680 57.895 26.53 25.04 0.00 3.96
82 83 1.000612 TCCCCACACATGCATGCAT 59.999 52.632 27.46 27.46 37.08 3.96
108 109 7.008440 CATGCATGCATACATACATACTACC 57.992 40.000 31.73 0.00 38.05 3.18
109 110 6.358974 TGCATGCATACATACATACTACCT 57.641 37.500 18.46 0.00 33.67 3.08
110 111 6.768483 TGCATGCATACATACATACTACCTT 58.232 36.000 18.46 0.00 33.67 3.50
111 112 6.873605 TGCATGCATACATACATACTACCTTC 59.126 38.462 18.46 0.00 33.67 3.46
112 113 6.035005 GCATGCATACATACATACTACCTTCG 59.965 42.308 14.21 0.00 33.67 3.79
113 114 6.644248 TGCATACATACATACTACCTTCGT 57.356 37.500 0.00 0.00 0.00 3.85
114 115 7.046292 TGCATACATACATACTACCTTCGTT 57.954 36.000 0.00 0.00 0.00 3.85
115 116 7.494211 TGCATACATACATACTACCTTCGTTT 58.506 34.615 0.00 0.00 0.00 3.60
116 117 7.650504 TGCATACATACATACTACCTTCGTTTC 59.349 37.037 0.00 0.00 0.00 2.78
117 118 7.650504 GCATACATACATACTACCTTCGTTTCA 59.349 37.037 0.00 0.00 0.00 2.69
118 119 9.524106 CATACATACATACTACCTTCGTTTCAA 57.476 33.333 0.00 0.00 0.00 2.69
121 122 9.444600 ACATACATACTACCTTCGTTTCAAATT 57.555 29.630 0.00 0.00 0.00 1.82
125 126 9.148104 ACATACTACCTTCGTTTCAAATTACTC 57.852 33.333 0.00 0.00 0.00 2.59
126 127 6.701432 ACTACCTTCGTTTCAAATTACTCG 57.299 37.500 0.00 0.00 0.00 4.18
127 128 6.218746 ACTACCTTCGTTTCAAATTACTCGT 58.781 36.000 0.00 0.00 0.00 4.18
128 129 7.370383 ACTACCTTCGTTTCAAATTACTCGTA 58.630 34.615 0.00 0.00 0.00 3.43
129 130 7.867403 ACTACCTTCGTTTCAAATTACTCGTAA 59.133 33.333 0.00 0.00 0.00 3.18
130 131 7.662604 ACCTTCGTTTCAAATTACTCGTAAT 57.337 32.000 0.00 0.00 37.36 1.89
131 132 8.761575 ACCTTCGTTTCAAATTACTCGTAATA 57.238 30.769 2.98 0.00 34.90 0.98
132 133 9.374838 ACCTTCGTTTCAAATTACTCGTAATAT 57.625 29.630 2.98 0.00 34.90 1.28
188 189 7.966246 AGATACATCTATTTCTACGACGAGT 57.034 36.000 0.00 0.00 34.85 4.18
190 191 9.486497 AGATACATCTATTTCTACGACGAGTAA 57.514 33.333 0.00 0.00 34.85 2.24
230 231 2.169832 TACCAGCAGCTCACAGAAAC 57.830 50.000 0.00 0.00 0.00 2.78
238 239 3.364366 GCAGCTCACAGAAACACACATAC 60.364 47.826 0.00 0.00 0.00 2.39
240 241 3.809832 AGCTCACAGAAACACACATACAC 59.190 43.478 0.00 0.00 0.00 2.90
241 242 3.058914 GCTCACAGAAACACACATACACC 60.059 47.826 0.00 0.00 0.00 4.16
242 243 4.126437 CTCACAGAAACACACATACACCA 58.874 43.478 0.00 0.00 0.00 4.17
243 244 4.713553 TCACAGAAACACACATACACCAT 58.286 39.130 0.00 0.00 0.00 3.55
244 245 5.859495 TCACAGAAACACACATACACCATA 58.141 37.500 0.00 0.00 0.00 2.74
245 246 5.931724 TCACAGAAACACACATACACCATAG 59.068 40.000 0.00 0.00 0.00 2.23
326 327 2.175878 GTGACAAGCACATGAGAGGT 57.824 50.000 0.00 0.00 46.91 3.85
332 333 1.222936 GCACATGAGAGGTCAGGGG 59.777 63.158 0.00 0.00 41.05 4.79
333 334 1.267574 GCACATGAGAGGTCAGGGGA 61.268 60.000 0.00 0.00 40.52 4.81
335 336 1.630369 CACATGAGAGGTCAGGGGAAA 59.370 52.381 0.00 0.00 40.52 3.13
336 337 1.912043 ACATGAGAGGTCAGGGGAAAG 59.088 52.381 0.00 0.00 38.87 2.62
337 338 1.211457 CATGAGAGGTCAGGGGAAAGG 59.789 57.143 0.00 0.00 35.66 3.11
396 419 2.438975 ACCACCCATCTGCATGCG 60.439 61.111 14.09 8.20 0.00 4.73
469 492 6.196724 CCAGAAACTACACGAACGAATATCTC 59.803 42.308 0.14 0.00 0.00 2.75
473 521 3.712091 ACACGAACGAATATCTCCTCC 57.288 47.619 0.14 0.00 0.00 4.30
478 526 3.502356 GAACGAATATCTCCTCCTCCCT 58.498 50.000 0.00 0.00 0.00 4.20
489 537 1.229853 TCCTCCCTTCCCTTCCACC 60.230 63.158 0.00 0.00 0.00 4.61
568 616 7.281549 ACACGTAGGGCGAAAATAAATAAAGAT 59.718 33.333 0.00 0.00 44.77 2.40
569 617 7.797123 CACGTAGGGCGAAAATAAATAAAGATC 59.203 37.037 0.00 0.00 44.77 2.75
570 618 7.007697 CGTAGGGCGAAAATAAATAAAGATCG 58.992 38.462 0.00 0.00 44.77 3.69
695 748 4.483711 GTGTAACGCTCCGTACCC 57.516 61.111 0.00 0.00 39.99 3.69
705 758 1.331214 CTCCGTACCCCGCCTTTATA 58.669 55.000 0.00 0.00 34.38 0.98
706 759 1.271656 CTCCGTACCCCGCCTTTATAG 59.728 57.143 0.00 0.00 34.38 1.31
719 772 2.079020 TTTATAGCCGCCTCCCGTCG 62.079 60.000 0.00 0.00 34.38 5.12
764 817 3.513566 GGTTGGGGTGGGGGTCAA 61.514 66.667 0.00 0.00 0.00 3.18
774 827 1.073199 GGGGGTCAAGTGTCAGTGG 59.927 63.158 0.00 0.00 0.00 4.00
777 830 1.073199 GGTCAAGTGTCAGTGGGGG 59.927 63.158 0.00 0.00 0.00 5.40
828 881 1.511887 TTAGTTCGTACGACCGCGC 60.512 57.895 19.36 0.00 42.48 6.86
858 911 1.228306 CCGTGGCCTGGGTGTTTAA 60.228 57.895 3.32 0.00 0.00 1.52
912 965 2.696504 TCCCACACCCACCCACAA 60.697 61.111 0.00 0.00 0.00 3.33
913 966 2.520741 CCCACACCCACCCACAAC 60.521 66.667 0.00 0.00 0.00 3.32
914 967 2.277072 CCACACCCACCCACAACA 59.723 61.111 0.00 0.00 0.00 3.33
915 968 1.380515 CCACACCCACCCACAACAA 60.381 57.895 0.00 0.00 0.00 2.83
916 969 1.391157 CCACACCCACCCACAACAAG 61.391 60.000 0.00 0.00 0.00 3.16
917 970 1.076339 ACACCCACCCACAACAAGG 60.076 57.895 0.00 0.00 0.00 3.61
918 971 2.123468 ACCCACCCACAACAAGGC 60.123 61.111 0.00 0.00 0.00 4.35
919 972 2.917227 CCCACCCACAACAAGGCC 60.917 66.667 0.00 0.00 0.00 5.19
920 973 2.123511 CCACCCACAACAAGGCCA 60.124 61.111 5.01 0.00 0.00 5.36
921 974 2.498056 CCACCCACAACAAGGCCAC 61.498 63.158 5.01 0.00 0.00 5.01
922 975 1.756172 CACCCACAACAAGGCCACA 60.756 57.895 5.01 0.00 0.00 4.17
923 976 1.000993 ACCCACAACAAGGCCACAA 59.999 52.632 5.01 0.00 0.00 3.33
947 1000 1.668101 CCGCCTCAGTCCTCCACTAC 61.668 65.000 0.00 0.00 32.21 2.73
960 1013 4.727332 TCCTCCACTACCAGATCTCTTCTA 59.273 45.833 0.00 0.00 31.77 2.10
961 1014 4.825085 CCTCCACTACCAGATCTCTTCTAC 59.175 50.000 0.00 0.00 31.77 2.59
962 1015 4.794334 TCCACTACCAGATCTCTTCTACC 58.206 47.826 0.00 0.00 31.77 3.18
963 1016 4.479056 TCCACTACCAGATCTCTTCTACCT 59.521 45.833 0.00 0.00 31.77 3.08
968 1021 2.969262 CCAGATCTCTTCTACCTTCCCC 59.031 54.545 0.00 0.00 31.77 4.81
990 1043 0.954449 GAGCAGAGCAAGCAGAGCAA 60.954 55.000 0.00 0.00 0.00 3.91
991 1044 0.956410 AGCAGAGCAAGCAGAGCAAG 60.956 55.000 0.00 0.00 0.00 4.01
993 1046 1.674980 AGAGCAAGCAGAGCAAGGC 60.675 57.895 0.00 0.00 0.00 4.35
994 1047 2.675772 AGCAAGCAGAGCAAGGCC 60.676 61.111 0.00 0.00 0.00 5.19
995 1048 2.987547 GCAAGCAGAGCAAGGCCA 60.988 61.111 5.01 0.00 0.00 5.36
1257 1326 4.090057 GACTTCAAGGTGCGCCGC 62.090 66.667 11.42 0.00 40.50 6.53
1656 1725 2.629051 CTCAGCAAGAGCATCATGTCA 58.371 47.619 0.00 0.00 45.49 3.58
1797 1875 4.891566 GTCAATGACGTCCTCGCT 57.108 55.556 14.12 0.00 41.18 4.93
1895 1973 4.530857 CTACGGCTCGCCCAAGGG 62.531 72.222 0.00 0.00 38.57 3.95
2158 2236 0.247460 CGACCTGATCAACTGAGGCA 59.753 55.000 0.00 0.00 0.00 4.75
2194 2272 0.517316 AGTTCATTTTGCGACGAGGC 59.483 50.000 0.00 0.00 0.00 4.70
2208 2286 0.371645 CGAGGCGCTCAACAAGATTC 59.628 55.000 7.64 0.00 0.00 2.52
2278 2357 1.900245 TACCCCCGAGTTTCTTTTGC 58.100 50.000 0.00 0.00 0.00 3.68
2279 2358 0.185175 ACCCCCGAGTTTCTTTTGCT 59.815 50.000 0.00 0.00 0.00 3.91
2280 2359 1.422402 ACCCCCGAGTTTCTTTTGCTA 59.578 47.619 0.00 0.00 0.00 3.49
2373 2453 0.253044 CGGAAGGGAGGCAAGATGAA 59.747 55.000 0.00 0.00 0.00 2.57
2374 2454 1.745141 CGGAAGGGAGGCAAGATGAAG 60.745 57.143 0.00 0.00 0.00 3.02
2375 2455 1.561542 GGAAGGGAGGCAAGATGAAGA 59.438 52.381 0.00 0.00 0.00 2.87
2376 2456 2.174424 GGAAGGGAGGCAAGATGAAGAT 59.826 50.000 0.00 0.00 0.00 2.40
2377 2457 3.212685 GAAGGGAGGCAAGATGAAGATG 58.787 50.000 0.00 0.00 0.00 2.90
2379 2459 2.848694 AGGGAGGCAAGATGAAGATGAA 59.151 45.455 0.00 0.00 0.00 2.57
2380 2460 3.117963 AGGGAGGCAAGATGAAGATGAAG 60.118 47.826 0.00 0.00 0.00 3.02
2381 2461 3.118112 GGGAGGCAAGATGAAGATGAAGA 60.118 47.826 0.00 0.00 0.00 2.87
2382 2462 4.446023 GGGAGGCAAGATGAAGATGAAGAT 60.446 45.833 0.00 0.00 0.00 2.40
2383 2463 4.515944 GGAGGCAAGATGAAGATGAAGATG 59.484 45.833 0.00 0.00 0.00 2.90
2489 2570 1.923356 TGGATTGGAACTTGGAAGGC 58.077 50.000 0.00 0.00 0.00 4.35
2492 2573 1.250840 ATTGGAACTTGGAAGGCGGC 61.251 55.000 0.00 0.00 0.00 6.53
2539 2623 0.959553 GCTGAAGCATGGATGGATGG 59.040 55.000 0.00 0.00 41.59 3.51
2540 2624 1.478105 GCTGAAGCATGGATGGATGGA 60.478 52.381 0.00 0.00 41.59 3.41
2620 2704 4.091509 GCTGATGTTTGTTTATCGTCGTCT 59.908 41.667 0.00 0.00 0.00 4.18
2634 2758 2.667448 CGTCGTCTGAAGACCGATTTCA 60.667 50.000 16.25 0.00 41.86 2.69
2734 2874 7.227512 AGCATATTTTGTACCTTAGCTGCTTAG 59.772 37.037 7.79 8.28 32.72 2.18
2735 2875 5.819825 ATTTTGTACCTTAGCTGCTTAGC 57.180 39.130 7.79 0.00 0.00 3.09
2736 2876 3.973206 TTGTACCTTAGCTGCTTAGCA 57.027 42.857 7.79 6.76 37.25 3.49
2754 2894 2.041620 AGCAGCCTTTAATCCCTGTTCA 59.958 45.455 0.00 0.00 0.00 3.18
2914 3060 7.240674 CACGTCTTGCTACATCTATCTATCTC 58.759 42.308 0.00 0.00 0.00 2.75
2925 3071 7.895759 ACATCTATCTATCTCTTCTTTCCAGC 58.104 38.462 0.00 0.00 0.00 4.85
2928 3074 7.950512 TCTATCTATCTCTTCTTTCCAGCAAG 58.049 38.462 0.00 0.00 0.00 4.01
2930 3076 7.667575 ATCTATCTCTTCTTTCCAGCAAGTA 57.332 36.000 0.00 0.00 0.00 2.24
2931 3077 7.482169 TCTATCTCTTCTTTCCAGCAAGTAA 57.518 36.000 0.00 0.00 0.00 2.24
2937 3083 5.299279 TCTTCTTTCCAGCAAGTAAAAGTGG 59.701 40.000 0.00 0.00 32.03 4.00
2948 3094 6.041979 AGCAAGTAAAAGTGGGAATGAAATGT 59.958 34.615 0.00 0.00 0.00 2.71
2958 3116 6.153340 AGTGGGAATGAAATGTAATGGTTGAG 59.847 38.462 0.00 0.00 0.00 3.02
3045 3204 1.705337 CGGCATGGTCGACAATGGTC 61.705 60.000 29.61 16.39 40.77 4.02
3054 3213 2.434884 ACAATGGTCGCTGCGGAG 60.435 61.111 23.03 0.00 0.00 4.63
3067 3226 3.842923 CGGAGCTCGGATGGCTGT 61.843 66.667 15.82 0.00 40.40 4.40
3120 3280 2.415010 CATGAGAGAGACCGGCGG 59.585 66.667 27.06 27.06 0.00 6.13
3121 3281 2.835431 ATGAGAGAGACCGGCGGG 60.835 66.667 31.78 12.53 40.11 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.070149 GTAATAGTAGTACTTGTCGAAAACCAG 57.930 37.037 8.40 0.00 0.00 4.00
1 2 8.796475 AGTAATAGTAGTACTTGTCGAAAACCA 58.204 33.333 8.40 0.00 0.00 3.67
5 6 9.890629 TCCTAGTAATAGTAGTACTTGTCGAAA 57.109 33.333 14.94 0.00 33.80 3.46
6 7 9.890629 TTCCTAGTAATAGTAGTACTTGTCGAA 57.109 33.333 14.94 10.01 33.80 3.71
7 8 9.890629 TTTCCTAGTAATAGTAGTACTTGTCGA 57.109 33.333 14.94 5.20 33.80 4.20
17 18 9.604626 CGTCCGTAAATTTCCTAGTAATAGTAG 57.395 37.037 0.00 0.00 0.00 2.57
18 19 9.120538 ACGTCCGTAAATTTCCTAGTAATAGTA 57.879 33.333 0.00 0.00 0.00 1.82
19 20 8.000780 ACGTCCGTAAATTTCCTAGTAATAGT 57.999 34.615 0.00 0.00 0.00 2.12
20 21 8.749499 CAACGTCCGTAAATTTCCTAGTAATAG 58.251 37.037 0.00 0.00 0.00 1.73
21 22 8.465999 TCAACGTCCGTAAATTTCCTAGTAATA 58.534 33.333 0.00 0.00 0.00 0.98
22 23 7.276438 GTCAACGTCCGTAAATTTCCTAGTAAT 59.724 37.037 0.00 0.00 0.00 1.89
23 24 6.586082 GTCAACGTCCGTAAATTTCCTAGTAA 59.414 38.462 0.00 0.00 0.00 2.24
24 25 6.092748 GTCAACGTCCGTAAATTTCCTAGTA 58.907 40.000 0.00 0.00 0.00 1.82
25 26 4.925646 GTCAACGTCCGTAAATTTCCTAGT 59.074 41.667 0.00 0.00 0.00 2.57
26 27 4.030977 CGTCAACGTCCGTAAATTTCCTAG 59.969 45.833 0.00 0.00 34.11 3.02
27 28 3.919804 CGTCAACGTCCGTAAATTTCCTA 59.080 43.478 0.00 0.00 34.11 2.94
28 29 2.733026 CGTCAACGTCCGTAAATTTCCT 59.267 45.455 0.00 0.00 34.11 3.36
29 30 2.159801 CCGTCAACGTCCGTAAATTTCC 60.160 50.000 0.00 0.00 37.74 3.13
30 31 2.722706 GCCGTCAACGTCCGTAAATTTC 60.723 50.000 0.00 0.00 37.74 2.17
31 32 1.195222 GCCGTCAACGTCCGTAAATTT 59.805 47.619 1.48 0.00 37.74 1.82
32 33 0.792031 GCCGTCAACGTCCGTAAATT 59.208 50.000 1.48 0.00 37.74 1.82
33 34 1.015607 GGCCGTCAACGTCCGTAAAT 61.016 55.000 1.48 0.00 37.74 1.40
34 35 1.664333 GGCCGTCAACGTCCGTAAA 60.664 57.895 1.48 0.00 37.74 2.01
35 36 2.049248 GGCCGTCAACGTCCGTAA 60.049 61.111 1.48 0.00 37.74 3.18
39 40 3.408851 GTTCGGCCGTCAACGTCC 61.409 66.667 27.15 0.00 37.74 4.79
40 41 1.764180 TTTGTTCGGCCGTCAACGTC 61.764 55.000 27.15 9.19 37.74 4.34
41 42 1.161563 ATTTGTTCGGCCGTCAACGT 61.162 50.000 27.15 17.81 37.74 3.99
42 43 0.040781 AATTTGTTCGGCCGTCAACG 60.041 50.000 27.15 0.00 39.44 4.10
43 44 1.664874 GGAATTTGTTCGGCCGTCAAC 60.665 52.381 27.15 22.90 0.00 3.18
44 45 0.594110 GGAATTTGTTCGGCCGTCAA 59.406 50.000 27.15 26.00 0.00 3.18
45 46 0.250553 AGGAATTTGTTCGGCCGTCA 60.251 50.000 27.15 21.90 0.00 4.35
46 47 0.446616 GAGGAATTTGTTCGGCCGTC 59.553 55.000 27.15 19.50 0.00 4.79
47 48 0.958876 GGAGGAATTTGTTCGGCCGT 60.959 55.000 27.15 2.66 0.00 5.68
48 49 1.654023 GGGAGGAATTTGTTCGGCCG 61.654 60.000 22.12 22.12 0.00 6.13
49 50 1.320344 GGGGAGGAATTTGTTCGGCC 61.320 60.000 0.00 0.00 0.00 6.13
50 51 0.610785 TGGGGAGGAATTTGTTCGGC 60.611 55.000 0.00 0.00 0.00 5.54
51 52 1.173913 GTGGGGAGGAATTTGTTCGG 58.826 55.000 0.00 0.00 0.00 4.30
52 53 1.539827 GTGTGGGGAGGAATTTGTTCG 59.460 52.381 0.00 0.00 0.00 3.95
53 54 2.593026 TGTGTGGGGAGGAATTTGTTC 58.407 47.619 0.00 0.00 0.00 3.18
54 55 2.765689 TGTGTGGGGAGGAATTTGTT 57.234 45.000 0.00 0.00 0.00 2.83
55 56 2.528564 CATGTGTGGGGAGGAATTTGT 58.471 47.619 0.00 0.00 0.00 2.83
56 57 1.205417 GCATGTGTGGGGAGGAATTTG 59.795 52.381 0.00 0.00 0.00 2.32
57 58 1.203162 TGCATGTGTGGGGAGGAATTT 60.203 47.619 0.00 0.00 0.00 1.82
58 59 0.409092 TGCATGTGTGGGGAGGAATT 59.591 50.000 0.00 0.00 0.00 2.17
59 60 0.632835 ATGCATGTGTGGGGAGGAAT 59.367 50.000 0.00 0.00 0.00 3.01
60 61 0.323633 CATGCATGTGTGGGGAGGAA 60.324 55.000 18.91 0.00 0.00 3.36
61 62 1.303948 CATGCATGTGTGGGGAGGA 59.696 57.895 18.91 0.00 0.00 3.71
62 63 2.420568 GCATGCATGTGTGGGGAGG 61.421 63.158 26.79 0.00 0.00 4.30
63 64 1.040893 ATGCATGCATGTGTGGGGAG 61.041 55.000 31.74 0.00 35.03 4.30
64 65 1.000612 ATGCATGCATGTGTGGGGA 59.999 52.632 31.74 0.21 35.03 4.81
65 66 1.142965 CATGCATGCATGTGTGGGG 59.857 57.895 40.30 21.55 46.20 4.96
66 67 4.825377 CATGCATGCATGTGTGGG 57.175 55.556 40.30 22.20 46.20 4.61
87 88 6.035005 CGAAGGTAGTATGTATGTATGCATGC 59.965 42.308 11.82 11.82 38.06 4.06
88 89 7.090808 ACGAAGGTAGTATGTATGTATGCATG 58.909 38.462 10.16 0.00 36.58 4.06
89 90 7.228314 ACGAAGGTAGTATGTATGTATGCAT 57.772 36.000 3.79 3.79 39.03 3.96
90 91 6.644248 ACGAAGGTAGTATGTATGTATGCA 57.356 37.500 0.00 0.00 0.00 3.96
91 92 7.650504 TGAAACGAAGGTAGTATGTATGTATGC 59.349 37.037 0.00 0.00 0.00 3.14
92 93 9.524106 TTGAAACGAAGGTAGTATGTATGTATG 57.476 33.333 0.00 0.00 0.00 2.39
95 96 9.444600 AATTTGAAACGAAGGTAGTATGTATGT 57.555 29.630 0.00 0.00 0.00 2.29
99 100 9.148104 GAGTAATTTGAAACGAAGGTAGTATGT 57.852 33.333 0.00 0.00 0.00 2.29
100 101 8.318876 CGAGTAATTTGAAACGAAGGTAGTATG 58.681 37.037 0.00 0.00 0.00 2.39
101 102 8.031277 ACGAGTAATTTGAAACGAAGGTAGTAT 58.969 33.333 0.00 0.00 0.00 2.12
102 103 7.370383 ACGAGTAATTTGAAACGAAGGTAGTA 58.630 34.615 0.00 0.00 0.00 1.82
103 104 6.218746 ACGAGTAATTTGAAACGAAGGTAGT 58.781 36.000 0.00 0.00 0.00 2.73
104 105 6.701432 ACGAGTAATTTGAAACGAAGGTAG 57.299 37.500 0.00 0.00 0.00 3.18
105 106 8.761575 ATTACGAGTAATTTGAAACGAAGGTA 57.238 30.769 2.87 0.00 32.21 3.08
106 107 7.662604 ATTACGAGTAATTTGAAACGAAGGT 57.337 32.000 2.87 0.00 32.21 3.50
162 163 9.486497 ACTCGTCGTAGAAATAGATGTATCTAA 57.514 33.333 5.75 0.00 39.88 2.10
164 165 7.966246 ACTCGTCGTAGAAATAGATGTATCT 57.034 36.000 0.00 0.00 39.69 1.98
168 169 7.797587 CGAATTACTCGTCGTAGAAATAGATGT 59.202 37.037 0.00 0.00 42.89 3.06
169 170 8.136701 CGAATTACTCGTCGTAGAAATAGATG 57.863 38.462 0.00 0.00 42.89 2.90
184 185 3.504863 TCCCTTCGTTTCGAATTACTCG 58.495 45.455 0.00 0.05 44.85 4.18
185 186 4.492611 ACTCCCTTCGTTTCGAATTACTC 58.507 43.478 0.00 0.00 44.85 2.59
186 187 4.532314 ACTCCCTTCGTTTCGAATTACT 57.468 40.909 0.00 0.00 44.85 2.24
187 188 5.163513 TGTACTCCCTTCGTTTCGAATTAC 58.836 41.667 0.00 0.00 44.85 1.89
188 189 5.389859 TGTACTCCCTTCGTTTCGAATTA 57.610 39.130 0.00 0.00 44.85 1.40
189 190 4.261578 TGTACTCCCTTCGTTTCGAATT 57.738 40.909 0.00 0.00 44.85 2.17
190 191 3.947910 TGTACTCCCTTCGTTTCGAAT 57.052 42.857 0.00 0.00 44.85 3.34
191 192 3.947910 ATGTACTCCCTTCGTTTCGAA 57.052 42.857 0.00 0.00 43.75 3.71
192 193 3.129287 GGTATGTACTCCCTTCGTTTCGA 59.871 47.826 0.00 0.00 0.00 3.71
193 194 3.119388 TGGTATGTACTCCCTTCGTTTCG 60.119 47.826 0.00 0.00 0.00 3.46
194 195 4.430908 CTGGTATGTACTCCCTTCGTTTC 58.569 47.826 0.00 0.00 0.00 2.78
195 196 3.369157 GCTGGTATGTACTCCCTTCGTTT 60.369 47.826 0.00 0.00 0.00 3.60
196 197 2.167900 GCTGGTATGTACTCCCTTCGTT 59.832 50.000 0.00 0.00 0.00 3.85
197 198 1.755380 GCTGGTATGTACTCCCTTCGT 59.245 52.381 0.00 0.00 0.00 3.85
198 199 1.754803 TGCTGGTATGTACTCCCTTCG 59.245 52.381 0.00 0.00 0.00 3.79
199 200 2.483889 GCTGCTGGTATGTACTCCCTTC 60.484 54.545 0.00 0.00 0.00 3.46
200 201 1.486726 GCTGCTGGTATGTACTCCCTT 59.513 52.381 0.00 0.00 0.00 3.95
201 202 1.123928 GCTGCTGGTATGTACTCCCT 58.876 55.000 0.00 0.00 0.00 4.20
202 203 1.069358 GAGCTGCTGGTATGTACTCCC 59.931 57.143 7.01 0.00 0.00 4.30
203 204 1.757118 TGAGCTGCTGGTATGTACTCC 59.243 52.381 7.01 0.00 0.00 3.85
204 205 2.166459 TGTGAGCTGCTGGTATGTACTC 59.834 50.000 7.01 0.00 0.00 2.59
205 206 2.167281 CTGTGAGCTGCTGGTATGTACT 59.833 50.000 7.01 0.00 0.00 2.73
206 207 2.166459 TCTGTGAGCTGCTGGTATGTAC 59.834 50.000 7.01 0.00 0.00 2.90
207 208 2.456577 TCTGTGAGCTGCTGGTATGTA 58.543 47.619 7.01 0.00 0.00 2.29
208 209 1.269958 TCTGTGAGCTGCTGGTATGT 58.730 50.000 7.01 0.00 0.00 2.29
209 210 2.391616 TTCTGTGAGCTGCTGGTATG 57.608 50.000 7.01 0.00 0.00 2.39
212 213 0.181114 TGTTTCTGTGAGCTGCTGGT 59.819 50.000 7.01 0.00 0.00 4.00
230 231 6.096987 AGAGGAACTACTATGGTGTATGTGTG 59.903 42.308 0.00 0.00 41.55 3.82
238 239 4.338682 AGCGTAAGAGGAACTACTATGGTG 59.661 45.833 0.00 0.00 41.55 4.17
240 241 6.262720 ACTTAGCGTAAGAGGAACTACTATGG 59.737 42.308 10.46 0.00 41.55 2.74
241 242 7.133513 CACTTAGCGTAAGAGGAACTACTATG 58.866 42.308 10.46 0.00 41.55 2.23
242 243 6.262720 CCACTTAGCGTAAGAGGAACTACTAT 59.737 42.308 12.49 0.00 45.74 2.12
243 244 5.587844 CCACTTAGCGTAAGAGGAACTACTA 59.412 44.000 12.49 0.00 45.74 1.82
244 245 4.398673 CCACTTAGCGTAAGAGGAACTACT 59.601 45.833 12.49 0.00 45.74 2.57
245 246 4.670347 CCACTTAGCGTAAGAGGAACTAC 58.330 47.826 12.49 0.00 45.74 2.73
321 322 2.133858 TTTCCTTTCCCCTGACCTCT 57.866 50.000 0.00 0.00 0.00 3.69
364 387 4.699522 GGTGAGGTGGGGTCGTGC 62.700 72.222 0.00 0.00 0.00 5.34
369 392 3.829311 ATGGGTGGTGAGGTGGGGT 62.829 63.158 0.00 0.00 0.00 4.95
396 419 3.499737 CGGGTTGGACAGATGCGC 61.500 66.667 0.00 0.00 0.00 6.09
421 444 1.995626 CTGGGGTAGGGACTGGTGG 60.996 68.421 0.00 0.00 41.52 4.61
469 492 1.082954 TGGAAGGGAAGGGAGGAGG 59.917 63.158 0.00 0.00 0.00 4.30
473 521 2.309504 GGGGTGGAAGGGAAGGGAG 61.310 68.421 0.00 0.00 0.00 4.30
478 526 3.315949 CGTCGGGGTGGAAGGGAA 61.316 66.667 0.00 0.00 0.00 3.97
553 601 8.008279 GCCCTACGACGATCTTTATTTATTTTC 58.992 37.037 0.00 0.00 0.00 2.29
719 772 3.827898 CCGTCAGCGAGAGGGGAC 61.828 72.222 11.62 0.00 46.26 4.46
751 804 3.182996 ACACTTGACCCCCACCCC 61.183 66.667 0.00 0.00 0.00 4.95
752 805 2.411765 CTGACACTTGACCCCCACCC 62.412 65.000 0.00 0.00 0.00 4.61
760 813 4.800554 CCCCCACTGACACTTGAC 57.199 61.111 0.00 0.00 0.00 3.18
798 851 1.266718 ACGAACTAACTGACGCCGTTA 59.733 47.619 0.00 0.00 0.00 3.18
828 881 2.125673 CCACGGCCGGAGTAACAG 60.126 66.667 31.76 8.03 0.00 3.16
929 982 1.668101 GGTAGTGGAGGACTGAGGCG 61.668 65.000 0.00 0.00 35.96 5.52
947 1000 2.969262 GGGGAAGGTAGAAGAGATCTGG 59.031 54.545 0.00 0.00 39.30 3.86
960 1013 0.689412 GCTCTGCTCTAGGGGAAGGT 60.689 60.000 0.00 0.00 0.00 3.50
961 1014 0.689080 TGCTCTGCTCTAGGGGAAGG 60.689 60.000 0.00 0.00 0.00 3.46
962 1015 1.138661 CTTGCTCTGCTCTAGGGGAAG 59.861 57.143 0.00 0.00 46.88 3.46
963 1016 1.198713 CTTGCTCTGCTCTAGGGGAA 58.801 55.000 0.00 0.00 34.49 3.97
968 1021 1.803625 GCTCTGCTTGCTCTGCTCTAG 60.804 57.143 0.00 0.00 0.00 2.43
990 1043 3.137728 TCATCATCATCATGTCTTGGCCT 59.862 43.478 3.32 0.00 0.00 5.19
991 1044 3.483421 TCATCATCATCATGTCTTGGCC 58.517 45.455 0.00 0.00 0.00 5.36
993 1046 3.186613 CGCTCATCATCATCATGTCTTGG 59.813 47.826 0.00 0.00 0.00 3.61
994 1047 4.056050 TCGCTCATCATCATCATGTCTTG 58.944 43.478 0.00 0.00 0.00 3.02
995 1048 4.308265 CTCGCTCATCATCATCATGTCTT 58.692 43.478 0.00 0.00 0.00 3.01
1656 1725 4.101448 GTGCTGGTGGGCGAGGAT 62.101 66.667 0.00 0.00 34.52 3.24
1848 1926 3.782443 GTGGGGTAGCCGGACCAG 61.782 72.222 5.05 0.00 41.73 4.00
1935 2013 3.385384 CTGGAGGCGCTGGTCTGA 61.385 66.667 7.64 0.00 0.00 3.27
2007 2085 1.990614 GGACTCCACCCTCTGGACC 60.991 68.421 0.00 0.00 44.99 4.46
2046 2124 2.259818 CTCAGCCGCTCGAACACT 59.740 61.111 0.00 0.00 0.00 3.55
2158 2236 2.904866 TTGCAAGAACGGCGGCTT 60.905 55.556 13.24 11.78 0.00 4.35
2186 2264 2.720758 CTTGTTGAGCGCCTCGTCG 61.721 63.158 2.29 0.00 32.35 5.12
2194 2272 0.443869 CCGTGGAATCTTGTTGAGCG 59.556 55.000 0.00 0.00 0.00 5.03
2261 2340 1.810755 GTAGCAAAAGAAACTCGGGGG 59.189 52.381 0.00 0.00 0.00 5.40
2266 2345 8.100508 ACTGGAAATAGTAGCAAAAGAAACTC 57.899 34.615 0.00 0.00 0.00 3.01
2278 2357 5.627499 TTTGCAGCAACTGGAAATAGTAG 57.373 39.130 7.54 0.00 44.42 2.57
2373 2453 3.074094 CACCCATCCATCCATCTTCATCT 59.926 47.826 0.00 0.00 0.00 2.90
2374 2454 3.418995 CACCCATCCATCCATCTTCATC 58.581 50.000 0.00 0.00 0.00 2.92
2375 2455 2.109480 CCACCCATCCATCCATCTTCAT 59.891 50.000 0.00 0.00 0.00 2.57
2376 2456 1.496001 CCACCCATCCATCCATCTTCA 59.504 52.381 0.00 0.00 0.00 3.02
2377 2457 1.776667 TCCACCCATCCATCCATCTTC 59.223 52.381 0.00 0.00 0.00 2.87
2379 2459 2.144800 ATCCACCCATCCATCCATCT 57.855 50.000 0.00 0.00 0.00 2.90
2380 2460 2.895404 CAAATCCACCCATCCATCCATC 59.105 50.000 0.00 0.00 0.00 3.51
2381 2461 2.248160 ACAAATCCACCCATCCATCCAT 59.752 45.455 0.00 0.00 0.00 3.41
2382 2462 1.645391 ACAAATCCACCCATCCATCCA 59.355 47.619 0.00 0.00 0.00 3.41
2383 2463 2.459555 ACAAATCCACCCATCCATCC 57.540 50.000 0.00 0.00 0.00 3.51
2533 2617 1.426215 CACCATCCATCCATCCATCCA 59.574 52.381 0.00 0.00 0.00 3.41
2534 2618 1.706866 TCACCATCCATCCATCCATCC 59.293 52.381 0.00 0.00 0.00 3.51
2535 2619 3.073503 TCTTCACCATCCATCCATCCATC 59.926 47.826 0.00 0.00 0.00 3.51
2536 2620 3.058341 TCTTCACCATCCATCCATCCAT 58.942 45.455 0.00 0.00 0.00 3.41
2537 2621 2.490961 TCTTCACCATCCATCCATCCA 58.509 47.619 0.00 0.00 0.00 3.41
2538 2622 3.073503 TCATCTTCACCATCCATCCATCC 59.926 47.826 0.00 0.00 0.00 3.51
2539 2623 4.325119 CTCATCTTCACCATCCATCCATC 58.675 47.826 0.00 0.00 0.00 3.51
2540 2624 3.074094 CCTCATCTTCACCATCCATCCAT 59.926 47.826 0.00 0.00 0.00 3.41
2620 2704 1.153353 GCGGTTGAAATCGGTCTTCA 58.847 50.000 0.00 0.00 0.00 3.02
2634 2758 2.304761 TGAAATCAACTAGAGGGCGGTT 59.695 45.455 0.00 0.00 0.00 4.44
2692 2816 0.475475 TGCTGTGGGGGATCATCATC 59.525 55.000 0.00 0.00 0.00 2.92
2693 2817 1.155323 ATGCTGTGGGGGATCATCAT 58.845 50.000 0.00 0.00 0.00 2.45
2694 2818 1.818419 TATGCTGTGGGGGATCATCA 58.182 50.000 0.00 0.00 0.00 3.07
2734 2874 2.446435 TGAACAGGGATTAAAGGCTGC 58.554 47.619 0.00 0.00 0.00 5.25
2735 2875 3.633986 GGATGAACAGGGATTAAAGGCTG 59.366 47.826 0.00 0.00 0.00 4.85
2736 2876 3.269381 TGGATGAACAGGGATTAAAGGCT 59.731 43.478 0.00 0.00 0.00 4.58
2737 2877 3.631250 TGGATGAACAGGGATTAAAGGC 58.369 45.455 0.00 0.00 0.00 4.35
2738 2878 5.069516 CCATTGGATGAACAGGGATTAAAGG 59.930 44.000 0.00 0.00 0.00 3.11
2739 2879 5.452356 GCCATTGGATGAACAGGGATTAAAG 60.452 44.000 6.95 0.00 0.00 1.85
2740 2880 4.405358 GCCATTGGATGAACAGGGATTAAA 59.595 41.667 6.95 0.00 0.00 1.52
2741 2881 3.960102 GCCATTGGATGAACAGGGATTAA 59.040 43.478 6.95 0.00 0.00 1.40
2742 2882 3.565307 GCCATTGGATGAACAGGGATTA 58.435 45.455 6.95 0.00 0.00 1.75
2754 2894 1.670811 GTTCGTTCATCGCCATTGGAT 59.329 47.619 6.95 0.00 39.67 3.41
2848 2990 6.830324 GGGTAAAAGAGTAACCGGGAATATTT 59.170 38.462 6.32 0.00 33.89 1.40
2901 3043 7.894708 TGCTGGAAAGAAGAGATAGATAGATG 58.105 38.462 0.00 0.00 0.00 2.90
2911 3053 6.260936 CACTTTTACTTGCTGGAAAGAAGAGA 59.739 38.462 0.00 0.00 34.20 3.10
2914 3060 5.507985 CCCACTTTTACTTGCTGGAAAGAAG 60.508 44.000 0.00 0.00 34.20 2.85
2925 3071 9.927668 ATTACATTTCATTCCCACTTTTACTTG 57.072 29.630 0.00 0.00 0.00 3.16
2928 3074 8.311109 ACCATTACATTTCATTCCCACTTTTAC 58.689 33.333 0.00 0.00 0.00 2.01
2930 3076 7.315066 ACCATTACATTTCATTCCCACTTTT 57.685 32.000 0.00 0.00 0.00 2.27
2931 3077 6.933514 ACCATTACATTTCATTCCCACTTT 57.066 33.333 0.00 0.00 0.00 2.66
2937 3083 6.808212 CACACTCAACCATTACATTTCATTCC 59.192 38.462 0.00 0.00 0.00 3.01
2948 3094 6.016360 CCAAGAACAATCACACTCAACCATTA 60.016 38.462 0.00 0.00 0.00 1.90
2958 3116 0.593128 AGCGCCAAGAACAATCACAC 59.407 50.000 2.29 0.00 0.00 3.82
3050 3209 3.842923 ACAGCCATCCGAGCTCCG 61.843 66.667 8.47 1.13 38.95 4.63
3054 3213 2.894387 GCTCACAGCCATCCGAGC 60.894 66.667 0.00 0.00 43.60 5.03
3067 3226 1.766059 ATCGCCCCCATACTGCTCA 60.766 57.895 0.00 0.00 0.00 4.26
3104 3264 2.835431 CCCGCCGGTCTCTCTCAT 60.835 66.667 1.90 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.