Multiple sequence alignment - TraesCS3A01G106900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G106900 chr3A 100.000 2288 0 0 1 2288 71154420 71156707 0.000000e+00 4226
1 TraesCS3A01G106900 chr3D 93.509 1741 91 6 1 1728 81833369 81835100 0.000000e+00 2569
2 TraesCS3A01G106900 chr3D 79.545 440 58 16 1850 2284 62161166 62161578 3.720000e-73 285
3 TraesCS3A01G106900 chr7A 93.026 1692 109 4 38 1728 221704976 221706659 0.000000e+00 2462
4 TraesCS3A01G106900 chr2D 92.849 1692 94 12 38 1728 88299512 88301177 0.000000e+00 2429
5 TraesCS3A01G106900 chr2D 92.538 1434 81 6 298 1728 469162163 469163573 0.000000e+00 2032
6 TraesCS3A01G106900 chr3B 91.399 1744 109 16 1 1728 804610331 804612049 0.000000e+00 2351
7 TraesCS3A01G106900 chr3B 91.853 1117 79 6 614 1725 782819506 782820615 0.000000e+00 1548
8 TraesCS3A01G106900 chr2A 91.494 1693 125 11 39 1727 652573223 652574900 0.000000e+00 2311
9 TraesCS3A01G106900 chr2B 90.935 1743 118 16 1 1726 116318259 116319978 0.000000e+00 2307
10 TraesCS3A01G106900 chr1B 91.964 1543 89 15 1 1534 155744902 155746418 0.000000e+00 2130
11 TraesCS3A01G106900 chr5A 92.246 1367 93 9 368 1733 292010822 292012176 0.000000e+00 1925


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G106900 chr3A 71154420 71156707 2287 False 4226 4226 100.000 1 2288 1 chr3A.!!$F1 2287
1 TraesCS3A01G106900 chr3D 81833369 81835100 1731 False 2569 2569 93.509 1 1728 1 chr3D.!!$F2 1727
2 TraesCS3A01G106900 chr7A 221704976 221706659 1683 False 2462 2462 93.026 38 1728 1 chr7A.!!$F1 1690
3 TraesCS3A01G106900 chr2D 88299512 88301177 1665 False 2429 2429 92.849 38 1728 1 chr2D.!!$F1 1690
4 TraesCS3A01G106900 chr2D 469162163 469163573 1410 False 2032 2032 92.538 298 1728 1 chr2D.!!$F2 1430
5 TraesCS3A01G106900 chr3B 804610331 804612049 1718 False 2351 2351 91.399 1 1728 1 chr3B.!!$F2 1727
6 TraesCS3A01G106900 chr3B 782819506 782820615 1109 False 1548 1548 91.853 614 1725 1 chr3B.!!$F1 1111
7 TraesCS3A01G106900 chr2A 652573223 652574900 1677 False 2311 2311 91.494 39 1727 1 chr2A.!!$F1 1688
8 TraesCS3A01G106900 chr2B 116318259 116319978 1719 False 2307 2307 90.935 1 1726 1 chr2B.!!$F1 1725
9 TraesCS3A01G106900 chr1B 155744902 155746418 1516 False 2130 2130 91.964 1 1534 1 chr1B.!!$F1 1533
10 TraesCS3A01G106900 chr5A 292010822 292012176 1354 False 1925 1925 92.246 368 1733 1 chr5A.!!$F1 1365

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
173 189 0.104725 CTCCTCCTTAGGCTCCCCAT 60.105 60.0 0.0 0.0 43.31 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1935 1987 0.033109 AAGCCCAGCCTAAATGACCC 60.033 55.0 0.0 0.0 0.0 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 70 4.889856 CATCATCGTGCGGGCCGA 62.890 66.667 33.44 12.50 38.89 5.54
151 167 3.512516 GGCATCTGCACCGCTTCC 61.513 66.667 4.33 0.00 44.36 3.46
173 189 0.104725 CTCCTCCTTAGGCTCCCCAT 60.105 60.000 0.00 0.00 43.31 4.00
215 231 0.330604 AGCCGTCTCCCAGTACACTA 59.669 55.000 0.00 0.00 0.00 2.74
218 234 1.676916 CCGTCTCCCAGTACACTACGA 60.677 57.143 0.00 0.00 0.00 3.43
226 242 1.456923 CAGTACACTACGACACGACGA 59.543 52.381 0.00 0.00 37.03 4.20
278 294 4.097286 TGCACCACTTCTTCCTTTGTTTAC 59.903 41.667 0.00 0.00 0.00 2.01
310 326 4.613143 GCCTGATTCATGGCCCAT 57.387 55.556 0.00 0.00 43.11 4.00
341 357 4.845580 CTGCCATCGCGCCCTTCT 62.846 66.667 0.00 0.00 38.08 2.85
364 380 2.571653 TGGGTCAGGAATCATCGTCTTT 59.428 45.455 0.00 0.00 0.00 2.52
377 393 3.660501 TCGTCTTTAGCTCTTCTGCAA 57.339 42.857 0.00 0.00 34.99 4.08
534 550 2.283894 CCAAGGGAAGGGGTTGGC 60.284 66.667 0.00 0.00 34.65 4.52
535 551 2.676471 CAAGGGAAGGGGTTGGCG 60.676 66.667 0.00 0.00 0.00 5.69
536 552 3.182996 AAGGGAAGGGGTTGGCGT 61.183 61.111 0.00 0.00 0.00 5.68
537 553 2.774633 AAGGGAAGGGGTTGGCGTT 61.775 57.895 0.00 0.00 0.00 4.84
538 554 2.989253 GGGAAGGGGTTGGCGTTG 60.989 66.667 0.00 0.00 0.00 4.10
610 627 2.024846 CAGTGAGAGAAGAGAGGGGGTA 60.025 54.545 0.00 0.00 0.00 3.69
619 636 4.547427 AGAAGAGAGGGGGTAGGTAAGTAA 59.453 45.833 0.00 0.00 0.00 2.24
724 741 4.760530 ATAAGCCATGAACTCTGTGCTA 57.239 40.909 0.00 0.00 0.00 3.49
732 749 2.502947 TGAACTCTGTGCTATGCCTGAT 59.497 45.455 0.00 0.00 0.00 2.90
734 751 3.641434 ACTCTGTGCTATGCCTGATTT 57.359 42.857 0.00 0.00 0.00 2.17
832 850 2.391724 AATGCCCGACGAGGTTGTGT 62.392 55.000 0.00 0.00 38.74 3.72
865 883 0.818296 CGAGGAAGACCCGAAGATGT 59.182 55.000 0.00 0.00 40.87 3.06
867 885 1.137282 GAGGAAGACCCGAAGATGTCC 59.863 57.143 0.00 0.00 40.87 4.02
926 950 3.109547 CAAGCGCCGCAACTACGA 61.110 61.111 13.36 0.00 34.06 3.43
993 1019 0.463654 TTGCACCGAAGCTTGAGTGT 60.464 50.000 20.78 4.62 34.99 3.55
1033 1059 2.733218 CCAAGCACTTCGTCGCGA 60.733 61.111 3.71 3.71 0.00 5.87
1067 1093 0.663153 AAGCTCAGAAACAACACCGC 59.337 50.000 0.00 0.00 0.00 5.68
1132 1158 2.204291 TGGATCAGGGTTGGGCCT 60.204 61.111 4.53 0.00 37.43 5.19
1175 1201 2.700371 TCAAGATCGGCTACATGGTGAT 59.300 45.455 0.00 0.00 0.00 3.06
1182 1208 2.095853 CGGCTACATGGTGATGTTCAAC 59.904 50.000 0.00 0.00 40.05 3.18
1313 1349 3.255634 GGGCCTCCCTAAGTACTATCA 57.744 52.381 0.84 0.00 41.34 2.15
1327 1363 9.593134 CTAAGTACTATCAAGTCTGCTTTGAAT 57.407 33.333 0.00 0.00 37.15 2.57
1586 1622 1.306296 ACACCAGGCAGTGTGGTTT 59.694 52.632 11.91 0.00 46.73 3.27
1595 1647 0.752054 CAGTGTGGTTTTGCCCATGT 59.248 50.000 0.00 0.00 36.74 3.21
1651 1703 2.512692 TATGGTGCATTTGAGGCTGT 57.487 45.000 0.00 0.00 0.00 4.40
1702 1754 4.335315 GGCTATGCAATGCAACTACTGTTA 59.665 41.667 13.45 0.00 43.62 2.41
1704 1756 5.294306 GCTATGCAATGCAACTACTGTTAGA 59.706 40.000 13.45 0.00 43.62 2.10
1728 1780 0.887387 GCAACCAAACACGCCCTAGA 60.887 55.000 0.00 0.00 0.00 2.43
1729 1781 1.156736 CAACCAAACACGCCCTAGAG 58.843 55.000 0.00 0.00 0.00 2.43
1731 1783 0.763035 ACCAAACACGCCCTAGAGTT 59.237 50.000 0.00 0.00 0.00 3.01
1732 1784 1.972795 ACCAAACACGCCCTAGAGTTA 59.027 47.619 0.00 0.00 0.00 2.24
1733 1785 2.570302 ACCAAACACGCCCTAGAGTTAT 59.430 45.455 0.00 0.00 0.00 1.89
1734 1786 3.008704 ACCAAACACGCCCTAGAGTTATT 59.991 43.478 0.00 0.00 0.00 1.40
1735 1787 3.621715 CCAAACACGCCCTAGAGTTATTC 59.378 47.826 0.00 0.00 0.00 1.75
1736 1788 2.865343 ACACGCCCTAGAGTTATTCG 57.135 50.000 0.00 0.00 0.00 3.34
1737 1789 2.097825 ACACGCCCTAGAGTTATTCGT 58.902 47.619 0.00 0.00 0.00 3.85
1738 1790 3.282021 ACACGCCCTAGAGTTATTCGTA 58.718 45.455 0.00 0.00 0.00 3.43
1739 1791 3.314635 ACACGCCCTAGAGTTATTCGTAG 59.685 47.826 0.00 0.00 0.00 3.51
1740 1792 2.883386 ACGCCCTAGAGTTATTCGTAGG 59.117 50.000 0.00 0.00 33.10 3.18
1741 1793 2.883386 CGCCCTAGAGTTATTCGTAGGT 59.117 50.000 0.00 0.00 31.59 3.08
1742 1794 3.304525 CGCCCTAGAGTTATTCGTAGGTG 60.305 52.174 0.00 0.00 31.59 4.00
1743 1795 3.635836 GCCCTAGAGTTATTCGTAGGTGT 59.364 47.826 0.00 0.00 31.59 4.16
1744 1796 4.499357 GCCCTAGAGTTATTCGTAGGTGTG 60.499 50.000 0.00 0.00 31.59 3.82
1745 1797 4.643784 CCCTAGAGTTATTCGTAGGTGTGT 59.356 45.833 0.00 0.00 31.59 3.72
1746 1798 5.221009 CCCTAGAGTTATTCGTAGGTGTGTC 60.221 48.000 0.00 0.00 31.59 3.67
1747 1799 4.715527 AGAGTTATTCGTAGGTGTGTCC 57.284 45.455 0.00 0.00 0.00 4.02
1748 1800 4.084287 AGAGTTATTCGTAGGTGTGTCCA 58.916 43.478 0.00 0.00 39.02 4.02
1749 1801 4.158025 AGAGTTATTCGTAGGTGTGTCCAG 59.842 45.833 0.00 0.00 39.02 3.86
1750 1802 3.194968 AGTTATTCGTAGGTGTGTCCAGG 59.805 47.826 0.00 0.00 39.02 4.45
1751 1803 0.902531 ATTCGTAGGTGTGTCCAGGG 59.097 55.000 0.00 0.00 39.02 4.45
1752 1804 1.823169 TTCGTAGGTGTGTCCAGGGC 61.823 60.000 0.00 0.00 39.02 5.19
1753 1805 2.283529 CGTAGGTGTGTCCAGGGCT 61.284 63.158 0.00 0.00 39.02 5.19
1754 1806 1.597461 GTAGGTGTGTCCAGGGCTC 59.403 63.158 0.00 0.00 39.02 4.70
1755 1807 1.157513 TAGGTGTGTCCAGGGCTCA 59.842 57.895 0.00 0.00 39.02 4.26
1756 1808 0.252696 TAGGTGTGTCCAGGGCTCAT 60.253 55.000 0.00 0.00 39.02 2.90
1757 1809 1.136329 AGGTGTGTCCAGGGCTCATT 61.136 55.000 0.00 0.00 39.02 2.57
1758 1810 0.678048 GGTGTGTCCAGGGCTCATTC 60.678 60.000 0.00 0.00 35.97 2.67
1759 1811 0.678048 GTGTGTCCAGGGCTCATTCC 60.678 60.000 0.00 0.00 0.00 3.01
1760 1812 1.133181 TGTGTCCAGGGCTCATTCCA 61.133 55.000 0.00 0.00 0.00 3.53
1761 1813 0.393537 GTGTCCAGGGCTCATTCCAG 60.394 60.000 0.00 0.00 0.00 3.86
1762 1814 0.547471 TGTCCAGGGCTCATTCCAGA 60.547 55.000 0.00 0.00 0.00 3.86
1763 1815 0.620556 GTCCAGGGCTCATTCCAGAA 59.379 55.000 0.00 0.00 0.00 3.02
1764 1816 1.213926 GTCCAGGGCTCATTCCAGAAT 59.786 52.381 0.00 0.00 0.00 2.40
1765 1817 2.439507 GTCCAGGGCTCATTCCAGAATA 59.560 50.000 0.00 0.00 0.00 1.75
1766 1818 3.117888 GTCCAGGGCTCATTCCAGAATAA 60.118 47.826 0.00 0.00 0.00 1.40
1767 1819 3.137176 TCCAGGGCTCATTCCAGAATAAG 59.863 47.826 0.00 0.00 0.00 1.73
1768 1820 2.883386 CAGGGCTCATTCCAGAATAAGC 59.117 50.000 6.94 6.94 40.52 3.09
1771 1823 2.936202 GCTCATTCCAGAATAAGCCCA 58.064 47.619 4.41 0.00 36.32 5.36
1772 1824 2.620585 GCTCATTCCAGAATAAGCCCAC 59.379 50.000 4.41 0.00 36.32 4.61
1773 1825 3.217626 CTCATTCCAGAATAAGCCCACC 58.782 50.000 0.00 0.00 0.00 4.61
1774 1826 2.091885 TCATTCCAGAATAAGCCCACCC 60.092 50.000 0.00 0.00 0.00 4.61
1775 1827 0.629058 TTCCAGAATAAGCCCACCCC 59.371 55.000 0.00 0.00 0.00 4.95
1776 1828 1.230212 CCAGAATAAGCCCACCCCC 59.770 63.158 0.00 0.00 0.00 5.40
1777 1829 1.289244 CCAGAATAAGCCCACCCCCT 61.289 60.000 0.00 0.00 0.00 4.79
1778 1830 0.631212 CAGAATAAGCCCACCCCCTT 59.369 55.000 0.00 0.00 0.00 3.95
1779 1831 0.631212 AGAATAAGCCCACCCCCTTG 59.369 55.000 0.00 0.00 0.00 3.61
1780 1832 0.335019 GAATAAGCCCACCCCCTTGT 59.665 55.000 0.00 0.00 0.00 3.16
1781 1833 0.041090 AATAAGCCCACCCCCTTGTG 59.959 55.000 0.00 0.00 35.98 3.33
1782 1834 1.146544 ATAAGCCCACCCCCTTGTGT 61.147 55.000 0.00 0.00 34.35 3.72
1783 1835 2.075355 TAAGCCCACCCCCTTGTGTG 62.075 60.000 0.00 0.00 34.35 3.82
1784 1836 4.218686 GCCCACCCCCTTGTGTGT 62.219 66.667 0.00 0.00 34.35 3.72
1785 1837 2.606449 CCCACCCCCTTGTGTGTT 59.394 61.111 0.00 0.00 34.35 3.32
1786 1838 1.075600 CCCACCCCCTTGTGTGTTT 60.076 57.895 0.00 0.00 34.35 2.83
1787 1839 0.689412 CCCACCCCCTTGTGTGTTTT 60.689 55.000 0.00 0.00 34.35 2.43
1788 1840 1.199615 CCACCCCCTTGTGTGTTTTT 58.800 50.000 0.00 0.00 34.35 1.94
1813 1865 9.862371 TTTAAGCAAGTAAATTGACTTTGTTCA 57.138 25.926 5.36 0.00 41.83 3.18
1815 1867 8.579682 AAGCAAGTAAATTGACTTTGTTCATC 57.420 30.769 5.36 0.00 41.83 2.92
1816 1868 7.945134 AGCAAGTAAATTGACTTTGTTCATCT 58.055 30.769 5.36 0.00 41.83 2.90
1817 1869 9.066892 AGCAAGTAAATTGACTTTGTTCATCTA 57.933 29.630 5.36 0.00 41.83 1.98
1818 1870 9.846248 GCAAGTAAATTGACTTTGTTCATCTAT 57.154 29.630 5.36 0.00 41.83 1.98
1827 1879 8.675705 TGACTTTGTTCATCTATCAAGTTTCA 57.324 30.769 0.00 0.00 0.00 2.69
1828 1880 9.119418 TGACTTTGTTCATCTATCAAGTTTCAA 57.881 29.630 0.00 0.00 0.00 2.69
1891 1943 3.945981 AAAAACTTTGTCCGTTGGTGT 57.054 38.095 0.00 0.00 0.00 4.16
1892 1944 2.931512 AAACTTTGTCCGTTGGTGTG 57.068 45.000 0.00 0.00 0.00 3.82
1893 1945 1.828979 AACTTTGTCCGTTGGTGTGT 58.171 45.000 0.00 0.00 0.00 3.72
1894 1946 1.828979 ACTTTGTCCGTTGGTGTGTT 58.171 45.000 0.00 0.00 0.00 3.32
1895 1947 1.470890 ACTTTGTCCGTTGGTGTGTTG 59.529 47.619 0.00 0.00 0.00 3.33
1896 1948 0.811915 TTTGTCCGTTGGTGTGTTGG 59.188 50.000 0.00 0.00 0.00 3.77
1897 1949 1.032657 TTGTCCGTTGGTGTGTTGGG 61.033 55.000 0.00 0.00 0.00 4.12
1898 1950 1.452470 GTCCGTTGGTGTGTTGGGT 60.452 57.895 0.00 0.00 0.00 4.51
1899 1951 1.033202 GTCCGTTGGTGTGTTGGGTT 61.033 55.000 0.00 0.00 0.00 4.11
1900 1952 1.032657 TCCGTTGGTGTGTTGGGTTG 61.033 55.000 0.00 0.00 0.00 3.77
1901 1953 1.226831 CGTTGGTGTGTTGGGTTGC 60.227 57.895 0.00 0.00 0.00 4.17
1902 1954 1.662438 CGTTGGTGTGTTGGGTTGCT 61.662 55.000 0.00 0.00 0.00 3.91
1903 1955 0.534873 GTTGGTGTGTTGGGTTGCTT 59.465 50.000 0.00 0.00 0.00 3.91
1904 1956 1.066502 GTTGGTGTGTTGGGTTGCTTT 60.067 47.619 0.00 0.00 0.00 3.51
1905 1957 1.270907 TGGTGTGTTGGGTTGCTTTT 58.729 45.000 0.00 0.00 0.00 2.27
1906 1958 1.066573 TGGTGTGTTGGGTTGCTTTTG 60.067 47.619 0.00 0.00 0.00 2.44
1908 1960 0.107945 TGTGTTGGGTTGCTTTTGCC 60.108 50.000 0.00 0.00 46.87 4.52
1909 1961 0.813610 GTGTTGGGTTGCTTTTGCCC 60.814 55.000 0.00 0.00 46.87 5.36
1910 1962 1.594021 GTTGGGTTGCTTTTGCCCG 60.594 57.895 0.00 0.00 45.19 6.13
1911 1963 2.060980 TTGGGTTGCTTTTGCCCGT 61.061 52.632 0.00 0.00 45.19 5.28
1912 1964 2.022240 TTGGGTTGCTTTTGCCCGTC 62.022 55.000 0.00 0.00 45.19 4.79
1913 1965 2.494530 GGGTTGCTTTTGCCCGTCA 61.495 57.895 0.00 0.00 46.87 4.35
1914 1966 1.665442 GGTTGCTTTTGCCCGTCAT 59.335 52.632 0.00 0.00 46.87 3.06
1915 1967 0.033366 GGTTGCTTTTGCCCGTCATT 59.967 50.000 0.00 0.00 46.87 2.57
1916 1968 1.418373 GTTGCTTTTGCCCGTCATTC 58.582 50.000 0.00 0.00 46.87 2.67
1917 1969 1.035923 TTGCTTTTGCCCGTCATTCA 58.964 45.000 0.00 0.00 46.87 2.57
1918 1970 1.255882 TGCTTTTGCCCGTCATTCAT 58.744 45.000 0.00 0.00 46.87 2.57
1919 1971 1.202114 TGCTTTTGCCCGTCATTCATC 59.798 47.619 0.00 0.00 46.87 2.92
1920 1972 1.202114 GCTTTTGCCCGTCATTCATCA 59.798 47.619 0.00 0.00 40.15 3.07
1921 1973 2.352617 GCTTTTGCCCGTCATTCATCAA 60.353 45.455 0.00 0.00 40.15 2.57
1922 1974 3.504863 CTTTTGCCCGTCATTCATCAAG 58.495 45.455 0.00 0.00 0.00 3.02
1923 1975 0.810648 TTGCCCGTCATTCATCAAGC 59.189 50.000 0.00 0.00 0.00 4.01
1924 1976 0.035152 TGCCCGTCATTCATCAAGCT 60.035 50.000 0.00 0.00 0.00 3.74
1925 1977 1.098050 GCCCGTCATTCATCAAGCTT 58.902 50.000 0.00 0.00 0.00 3.74
1926 1978 1.474077 GCCCGTCATTCATCAAGCTTT 59.526 47.619 0.00 0.00 0.00 3.51
1927 1979 2.733227 GCCCGTCATTCATCAAGCTTTG 60.733 50.000 0.00 0.00 0.00 2.77
1928 1980 2.159338 CCCGTCATTCATCAAGCTTTGG 60.159 50.000 0.00 0.00 0.00 3.28
1929 1981 2.489329 CCGTCATTCATCAAGCTTTGGT 59.511 45.455 0.00 0.00 0.00 3.67
1930 1982 3.426695 CCGTCATTCATCAAGCTTTGGTC 60.427 47.826 0.00 0.00 0.00 4.02
1931 1983 3.189080 CGTCATTCATCAAGCTTTGGTCA 59.811 43.478 0.00 0.00 0.00 4.02
1932 1984 4.479619 GTCATTCATCAAGCTTTGGTCAC 58.520 43.478 0.00 0.00 0.00 3.67
1933 1985 3.189080 TCATTCATCAAGCTTTGGTCACG 59.811 43.478 0.00 0.00 0.00 4.35
1934 1986 2.542020 TCATCAAGCTTTGGTCACGA 57.458 45.000 0.00 0.00 0.00 4.35
1935 1987 2.416747 TCATCAAGCTTTGGTCACGAG 58.583 47.619 0.00 0.00 0.00 4.18
1936 1988 1.466167 CATCAAGCTTTGGTCACGAGG 59.534 52.381 0.00 0.00 0.00 4.63
1937 1989 0.250295 TCAAGCTTTGGTCACGAGGG 60.250 55.000 0.00 0.00 0.00 4.30
1938 1990 0.535102 CAAGCTTTGGTCACGAGGGT 60.535 55.000 0.00 0.00 0.00 4.34
1939 1991 0.250338 AAGCTTTGGTCACGAGGGTC 60.250 55.000 0.00 0.00 0.00 4.46
1940 1992 1.070786 GCTTTGGTCACGAGGGTCA 59.929 57.895 0.00 0.00 0.00 4.02
1941 1993 0.321653 GCTTTGGTCACGAGGGTCAT 60.322 55.000 0.00 0.00 0.00 3.06
1942 1994 1.882352 GCTTTGGTCACGAGGGTCATT 60.882 52.381 0.00 0.00 0.00 2.57
1943 1995 2.504367 CTTTGGTCACGAGGGTCATTT 58.496 47.619 0.00 0.00 0.00 2.32
1944 1996 3.670625 CTTTGGTCACGAGGGTCATTTA 58.329 45.455 0.00 0.00 0.00 1.40
1945 1997 3.328382 TTGGTCACGAGGGTCATTTAG 57.672 47.619 0.00 0.00 0.00 1.85
1946 1998 1.553248 TGGTCACGAGGGTCATTTAGG 59.447 52.381 0.00 0.00 0.00 2.69
1947 1999 1.653151 GTCACGAGGGTCATTTAGGC 58.347 55.000 0.00 0.00 0.00 3.93
1948 2000 1.207329 GTCACGAGGGTCATTTAGGCT 59.793 52.381 0.00 0.00 0.00 4.58
1949 2001 1.207089 TCACGAGGGTCATTTAGGCTG 59.793 52.381 0.00 0.00 0.00 4.85
1950 2002 0.541863 ACGAGGGTCATTTAGGCTGG 59.458 55.000 0.00 0.00 0.00 4.85
1951 2003 0.179045 CGAGGGTCATTTAGGCTGGG 60.179 60.000 0.00 0.00 0.00 4.45
1952 2004 0.466372 GAGGGTCATTTAGGCTGGGC 60.466 60.000 0.00 0.00 0.00 5.36
1953 2005 0.921256 AGGGTCATTTAGGCTGGGCT 60.921 55.000 0.00 1.68 0.00 5.19
1954 2006 0.033109 GGGTCATTTAGGCTGGGCTT 60.033 55.000 0.00 0.00 0.00 4.35
1955 2007 1.619704 GGGTCATTTAGGCTGGGCTTT 60.620 52.381 0.00 0.00 0.00 3.51
1956 2008 2.357777 GGGTCATTTAGGCTGGGCTTTA 60.358 50.000 0.00 0.00 0.00 1.85
1957 2009 2.952310 GGTCATTTAGGCTGGGCTTTAG 59.048 50.000 0.00 0.00 0.00 1.85
1958 2010 3.621558 GTCATTTAGGCTGGGCTTTAGT 58.378 45.455 0.00 0.00 0.00 2.24
1959 2011 3.378427 GTCATTTAGGCTGGGCTTTAGTG 59.622 47.826 0.00 0.00 0.00 2.74
1960 2012 1.834188 TTTAGGCTGGGCTTTAGTGC 58.166 50.000 0.00 0.00 0.00 4.40
1961 2013 0.392461 TTAGGCTGGGCTTTAGTGCG 60.392 55.000 0.00 0.00 0.00 5.34
1962 2014 1.550130 TAGGCTGGGCTTTAGTGCGT 61.550 55.000 0.00 0.00 0.00 5.24
1963 2015 1.971695 GGCTGGGCTTTAGTGCGTT 60.972 57.895 0.00 0.00 0.00 4.84
1964 2016 1.210155 GCTGGGCTTTAGTGCGTTG 59.790 57.895 0.00 0.00 0.00 4.10
1965 2017 1.875963 CTGGGCTTTAGTGCGTTGG 59.124 57.895 0.00 0.00 0.00 3.77
1966 2018 2.200170 CTGGGCTTTAGTGCGTTGGC 62.200 60.000 0.00 0.00 40.52 4.52
1967 2019 1.971695 GGGCTTTAGTGCGTTGGCT 60.972 57.895 0.00 0.00 40.82 4.75
1968 2020 1.524008 GGGCTTTAGTGCGTTGGCTT 61.524 55.000 0.00 0.00 40.82 4.35
1969 2021 0.387239 GGCTTTAGTGCGTTGGCTTG 60.387 55.000 0.00 0.00 40.82 4.01
1970 2022 0.310854 GCTTTAGTGCGTTGGCTTGT 59.689 50.000 0.00 0.00 40.82 3.16
1971 2023 1.269051 GCTTTAGTGCGTTGGCTTGTT 60.269 47.619 0.00 0.00 40.82 2.83
1972 2024 2.798145 GCTTTAGTGCGTTGGCTTGTTT 60.798 45.455 0.00 0.00 40.82 2.83
1973 2025 3.443976 CTTTAGTGCGTTGGCTTGTTTT 58.556 40.909 0.00 0.00 40.82 2.43
1974 2026 2.766970 TAGTGCGTTGGCTTGTTTTC 57.233 45.000 0.00 0.00 40.82 2.29
1975 2027 0.814457 AGTGCGTTGGCTTGTTTTCA 59.186 45.000 0.00 0.00 40.82 2.69
1976 2028 1.199624 GTGCGTTGGCTTGTTTTCAG 58.800 50.000 0.00 0.00 40.82 3.02
1977 2029 0.102120 TGCGTTGGCTTGTTTTCAGG 59.898 50.000 0.00 0.00 40.82 3.86
1978 2030 0.102300 GCGTTGGCTTGTTTTCAGGT 59.898 50.000 0.00 0.00 35.83 4.00
1979 2031 1.470805 GCGTTGGCTTGTTTTCAGGTT 60.471 47.619 0.00 0.00 35.83 3.50
1980 2032 2.223618 GCGTTGGCTTGTTTTCAGGTTA 60.224 45.455 0.00 0.00 35.83 2.85
1981 2033 3.552068 GCGTTGGCTTGTTTTCAGGTTAT 60.552 43.478 0.00 0.00 35.83 1.89
1982 2034 4.616953 CGTTGGCTTGTTTTCAGGTTATT 58.383 39.130 0.00 0.00 0.00 1.40
1983 2035 5.047188 CGTTGGCTTGTTTTCAGGTTATTT 58.953 37.500 0.00 0.00 0.00 1.40
1984 2036 5.051106 CGTTGGCTTGTTTTCAGGTTATTTG 60.051 40.000 0.00 0.00 0.00 2.32
1985 2037 5.606348 TGGCTTGTTTTCAGGTTATTTGT 57.394 34.783 0.00 0.00 0.00 2.83
1986 2038 5.983540 TGGCTTGTTTTCAGGTTATTTGTT 58.016 33.333 0.00 0.00 0.00 2.83
1987 2039 6.410540 TGGCTTGTTTTCAGGTTATTTGTTT 58.589 32.000 0.00 0.00 0.00 2.83
1988 2040 6.881602 TGGCTTGTTTTCAGGTTATTTGTTTT 59.118 30.769 0.00 0.00 0.00 2.43
1989 2041 7.065204 TGGCTTGTTTTCAGGTTATTTGTTTTC 59.935 33.333 0.00 0.00 0.00 2.29
1990 2042 7.065204 GGCTTGTTTTCAGGTTATTTGTTTTCA 59.935 33.333 0.00 0.00 0.00 2.69
1991 2043 8.116136 GCTTGTTTTCAGGTTATTTGTTTTCAG 58.884 33.333 0.00 0.00 0.00 3.02
1992 2044 8.485976 TTGTTTTCAGGTTATTTGTTTTCAGG 57.514 30.769 0.00 0.00 0.00 3.86
1993 2045 7.616313 TGTTTTCAGGTTATTTGTTTTCAGGT 58.384 30.769 0.00 0.00 0.00 4.00
1994 2046 8.097662 TGTTTTCAGGTTATTTGTTTTCAGGTT 58.902 29.630 0.00 0.00 0.00 3.50
1995 2047 8.387354 GTTTTCAGGTTATTTGTTTTCAGGTTG 58.613 33.333 0.00 0.00 0.00 3.77
1996 2048 6.783708 TCAGGTTATTTGTTTTCAGGTTGT 57.216 33.333 0.00 0.00 0.00 3.32
1997 2049 7.176589 TCAGGTTATTTGTTTTCAGGTTGTT 57.823 32.000 0.00 0.00 0.00 2.83
1998 2050 7.038659 TCAGGTTATTTGTTTTCAGGTTGTTG 58.961 34.615 0.00 0.00 0.00 3.33
1999 2051 5.815222 AGGTTATTTGTTTTCAGGTTGTTGC 59.185 36.000 0.00 0.00 0.00 4.17
2000 2052 5.815222 GGTTATTTGTTTTCAGGTTGTTGCT 59.185 36.000 0.00 0.00 0.00 3.91
2001 2053 6.315144 GGTTATTTGTTTTCAGGTTGTTGCTT 59.685 34.615 0.00 0.00 0.00 3.91
2002 2054 7.398746 GTTATTTGTTTTCAGGTTGTTGCTTC 58.601 34.615 0.00 0.00 0.00 3.86
2003 2055 3.518634 TGTTTTCAGGTTGTTGCTTCC 57.481 42.857 0.00 0.00 0.00 3.46
2004 2056 3.096092 TGTTTTCAGGTTGTTGCTTCCT 58.904 40.909 0.00 0.00 0.00 3.36
2005 2057 4.274147 TGTTTTCAGGTTGTTGCTTCCTA 58.726 39.130 0.00 0.00 0.00 2.94
2006 2058 4.892934 TGTTTTCAGGTTGTTGCTTCCTAT 59.107 37.500 0.00 0.00 0.00 2.57
2007 2059 5.362430 TGTTTTCAGGTTGTTGCTTCCTATT 59.638 36.000 0.00 0.00 0.00 1.73
2008 2060 5.705609 TTTCAGGTTGTTGCTTCCTATTC 57.294 39.130 0.00 0.00 0.00 1.75
2009 2061 4.365514 TCAGGTTGTTGCTTCCTATTCA 57.634 40.909 0.00 0.00 0.00 2.57
2010 2062 4.326826 TCAGGTTGTTGCTTCCTATTCAG 58.673 43.478 0.00 0.00 0.00 3.02
2011 2063 3.084786 AGGTTGTTGCTTCCTATTCAGC 58.915 45.455 0.00 0.00 36.49 4.26
2012 2064 3.084786 GGTTGTTGCTTCCTATTCAGCT 58.915 45.455 0.00 0.00 36.92 4.24
2013 2065 3.127721 GGTTGTTGCTTCCTATTCAGCTC 59.872 47.826 0.00 0.00 36.92 4.09
2014 2066 2.621338 TGTTGCTTCCTATTCAGCTCG 58.379 47.619 0.00 0.00 36.92 5.03
2015 2067 2.233676 TGTTGCTTCCTATTCAGCTCGA 59.766 45.455 0.00 0.00 36.92 4.04
2016 2068 3.118629 TGTTGCTTCCTATTCAGCTCGAT 60.119 43.478 0.00 0.00 36.92 3.59
2017 2069 3.377346 TGCTTCCTATTCAGCTCGATC 57.623 47.619 0.00 0.00 36.92 3.69
2018 2070 2.695147 TGCTTCCTATTCAGCTCGATCA 59.305 45.455 0.00 0.00 36.92 2.92
2019 2071 3.243670 TGCTTCCTATTCAGCTCGATCAG 60.244 47.826 0.00 0.00 36.92 2.90
2020 2072 3.860378 GCTTCCTATTCAGCTCGATCAGG 60.860 52.174 0.00 0.00 32.87 3.86
2021 2073 1.615883 TCCTATTCAGCTCGATCAGGC 59.384 52.381 0.00 0.00 0.00 4.85
2022 2074 1.342496 CCTATTCAGCTCGATCAGGCA 59.658 52.381 9.14 0.00 0.00 4.75
2023 2075 2.402305 CTATTCAGCTCGATCAGGCAC 58.598 52.381 9.14 0.00 0.00 5.01
2024 2076 0.529337 ATTCAGCTCGATCAGGCACG 60.529 55.000 9.14 0.00 0.00 5.34
2025 2077 1.877576 TTCAGCTCGATCAGGCACGT 61.878 55.000 9.14 0.00 0.00 4.49
2026 2078 1.029947 TCAGCTCGATCAGGCACGTA 61.030 55.000 9.14 0.00 0.00 3.57
2027 2079 0.867753 CAGCTCGATCAGGCACGTAC 60.868 60.000 9.14 0.00 0.00 3.67
2028 2080 1.032657 AGCTCGATCAGGCACGTACT 61.033 55.000 9.14 0.00 0.00 2.73
2029 2081 0.867753 GCTCGATCAGGCACGTACTG 60.868 60.000 11.96 11.96 37.30 2.74
2030 2082 0.867753 CTCGATCAGGCACGTACTGC 60.868 60.000 13.05 8.31 46.31 4.40
2031 2083 1.139734 CGATCAGGCACGTACTGCT 59.860 57.895 13.05 5.24 46.25 4.24
2032 2084 0.867753 CGATCAGGCACGTACTGCTC 60.868 60.000 13.05 12.07 46.25 4.26
2033 2085 0.867753 GATCAGGCACGTACTGCTCG 60.868 60.000 13.05 8.03 46.25 5.03
2034 2086 2.890847 ATCAGGCACGTACTGCTCGC 62.891 60.000 13.05 0.00 46.25 5.03
2035 2087 3.374402 AGGCACGTACTGCTCGCT 61.374 61.111 14.28 4.00 46.25 4.93
2036 2088 2.432628 GGCACGTACTGCTCGCTT 60.433 61.111 14.28 0.00 46.25 4.68
2037 2089 2.027625 GGCACGTACTGCTCGCTTT 61.028 57.895 14.28 0.00 46.25 3.51
2038 2090 1.566018 GGCACGTACTGCTCGCTTTT 61.566 55.000 14.28 0.00 46.25 2.27
2039 2091 0.451135 GCACGTACTGCTCGCTTTTG 60.451 55.000 9.26 0.00 43.33 2.44
2040 2092 0.859232 CACGTACTGCTCGCTTTTGT 59.141 50.000 0.00 0.00 0.00 2.83
2041 2093 1.260561 CACGTACTGCTCGCTTTTGTT 59.739 47.619 0.00 0.00 0.00 2.83
2042 2094 1.525619 ACGTACTGCTCGCTTTTGTTC 59.474 47.619 0.00 0.00 0.00 3.18
2043 2095 1.460267 CGTACTGCTCGCTTTTGTTCG 60.460 52.381 0.00 0.00 0.00 3.95
2044 2096 1.525619 GTACTGCTCGCTTTTGTTCGT 59.474 47.619 0.00 0.00 0.00 3.85
2045 2097 1.014352 ACTGCTCGCTTTTGTTCGTT 58.986 45.000 0.00 0.00 0.00 3.85
2046 2098 1.400494 ACTGCTCGCTTTTGTTCGTTT 59.600 42.857 0.00 0.00 0.00 3.60
2047 2099 1.775208 CTGCTCGCTTTTGTTCGTTTG 59.225 47.619 0.00 0.00 0.00 2.93
2048 2100 1.131504 TGCTCGCTTTTGTTCGTTTGT 59.868 42.857 0.00 0.00 0.00 2.83
2049 2101 2.182014 GCTCGCTTTTGTTCGTTTGTT 58.818 42.857 0.00 0.00 0.00 2.83
2050 2102 2.596862 GCTCGCTTTTGTTCGTTTGTTT 59.403 40.909 0.00 0.00 0.00 2.83
2051 2103 3.060230 GCTCGCTTTTGTTCGTTTGTTTT 59.940 39.130 0.00 0.00 0.00 2.43
2052 2104 4.433674 GCTCGCTTTTGTTCGTTTGTTTTT 60.434 37.500 0.00 0.00 0.00 1.94
2089 2141 7.518731 TTTTTGCTGATACTTGTTTGTTGTC 57.481 32.000 0.00 0.00 0.00 3.18
2090 2142 6.449635 TTTGCTGATACTTGTTTGTTGTCT 57.550 33.333 0.00 0.00 0.00 3.41
2091 2143 6.449635 TTGCTGATACTTGTTTGTTGTCTT 57.550 33.333 0.00 0.00 0.00 3.01
2092 2144 5.820131 TGCTGATACTTGTTTGTTGTCTTG 58.180 37.500 0.00 0.00 0.00 3.02
2093 2145 5.215160 GCTGATACTTGTTTGTTGTCTTGG 58.785 41.667 0.00 0.00 0.00 3.61
2094 2146 5.221048 GCTGATACTTGTTTGTTGTCTTGGT 60.221 40.000 0.00 0.00 0.00 3.67
2095 2147 6.017440 GCTGATACTTGTTTGTTGTCTTGGTA 60.017 38.462 0.00 0.00 0.00 3.25
2096 2148 7.468084 GCTGATACTTGTTTGTTGTCTTGGTAA 60.468 37.037 0.00 0.00 0.00 2.85
2097 2149 8.282455 TGATACTTGTTTGTTGTCTTGGTAAA 57.718 30.769 0.00 0.00 0.00 2.01
2098 2150 8.740906 TGATACTTGTTTGTTGTCTTGGTAAAA 58.259 29.630 0.00 0.00 0.00 1.52
2099 2151 9.575783 GATACTTGTTTGTTGTCTTGGTAAAAA 57.424 29.630 0.00 0.00 0.00 1.94
2236 2288 8.419076 AAAAAGTGAGCGAATACATTGTTTTT 57.581 26.923 0.00 0.00 0.00 1.94
2281 2333 7.462109 CAACAATTTGGAAAAAGATGACGAA 57.538 32.000 0.78 0.00 0.00 3.85
2282 2334 8.075593 CAACAATTTGGAAAAAGATGACGAAT 57.924 30.769 0.78 0.00 0.00 3.34
2283 2335 8.550376 CAACAATTTGGAAAAAGATGACGAATT 58.450 29.630 0.78 0.00 0.00 2.17
2284 2336 9.757227 AACAATTTGGAAAAAGATGACGAATTA 57.243 25.926 0.78 0.00 0.00 1.40
2285 2337 9.757227 ACAATTTGGAAAAAGATGACGAATTAA 57.243 25.926 0.78 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 4.074526 GCTCGACCTGCTGCTCCA 62.075 66.667 0.00 0.00 0.00 3.86
57 70 1.432251 GATGACGACGATGACCCGT 59.568 57.895 0.00 0.00 46.43 5.28
97 110 2.652530 GGTCGTCGTACCTGGCAA 59.347 61.111 0.00 0.00 36.53 4.52
215 231 2.011947 TCCTAATGATCGTCGTGTCGT 58.988 47.619 0.00 0.00 0.00 4.34
218 234 1.067212 GGCTCCTAATGATCGTCGTGT 59.933 52.381 0.00 0.00 0.00 4.49
226 242 4.561752 AGAACTACTGGGCTCCTAATGAT 58.438 43.478 0.00 0.00 0.00 2.45
310 326 2.470983 TGGCAGTTGACATCATTCGA 57.529 45.000 0.00 0.00 0.00 3.71
341 357 1.757118 GACGATGATTCCTGACCCAGA 59.243 52.381 0.00 0.00 32.44 3.86
364 380 0.914644 AGGCCATTGCAGAAGAGCTA 59.085 50.000 5.01 0.00 40.13 3.32
377 393 1.035932 GCAGTGCTCATGAAGGCCAT 61.036 55.000 8.18 0.00 35.44 4.40
535 551 2.281484 TCCAGCTCCAACGCCAAC 60.281 61.111 0.00 0.00 0.00 3.77
536 552 2.032528 CTCCAGCTCCAACGCCAA 59.967 61.111 0.00 0.00 0.00 4.52
537 553 4.704833 GCTCCAGCTCCAACGCCA 62.705 66.667 0.00 0.00 38.21 5.69
557 573 0.758734 CTCCCCATCGCCATGAACTA 59.241 55.000 0.00 0.00 30.57 2.24
610 627 2.025321 CCCTGCCCAACATTACTTACCT 60.025 50.000 0.00 0.00 0.00 3.08
619 636 1.072266 TTACTCACCCTGCCCAACAT 58.928 50.000 0.00 0.00 0.00 2.71
724 741 5.416083 CACACAATTCATGAAATCAGGCAT 58.584 37.500 13.09 0.00 0.00 4.40
732 749 4.455190 TCGATCTGCACACAATTCATGAAA 59.545 37.500 13.09 0.00 0.00 2.69
734 751 3.598299 TCGATCTGCACACAATTCATGA 58.402 40.909 0.00 0.00 0.00 3.07
775 793 1.388065 CCCTTGTTGTCAACGGCCAA 61.388 55.000 11.03 0.00 0.00 4.52
926 950 2.402564 CATCCTCCTGATGGTAGTGGT 58.597 52.381 0.00 0.00 45.99 4.16
993 1019 1.774217 GTCCAGGGGCATGGGGATA 60.774 63.158 7.99 0.00 41.01 2.59
1033 1059 1.741770 GCTTGAACTCCGTCGGCAT 60.742 57.895 6.34 0.00 0.00 4.40
1067 1093 1.298014 GTCACCTTCCAGGAGCAGG 59.702 63.158 5.69 5.69 37.67 4.85
1132 1158 1.141019 GATGAACGGCTGCGTAGGA 59.859 57.895 1.76 0.00 0.00 2.94
1175 1201 1.056660 GGGAGTGAGGAGGTTGAACA 58.943 55.000 0.00 0.00 0.00 3.18
1182 1208 2.352032 GGTGTCGGGAGTGAGGAGG 61.352 68.421 0.00 0.00 0.00 4.30
1313 1349 8.947055 AAACATAAACAATTCAAAGCAGACTT 57.053 26.923 0.00 0.00 37.90 3.01
1355 1391 3.125316 GCAGTACCACACTTCATAACAGC 59.875 47.826 0.00 0.00 34.26 4.40
1424 1460 5.003160 TGTAGCACACATCATAAGCAAAGT 58.997 37.500 0.00 0.00 30.04 2.66
1534 1570 3.935818 TGTTAGTGGACAAACCCAAGA 57.064 42.857 0.00 0.00 38.06 3.02
1595 1647 1.225426 CTGCATGCCCTCTTGCCTA 59.775 57.895 16.68 0.00 41.20 3.93
1651 1703 4.760530 ACTCAGTCTGGCTATGCAAATA 57.239 40.909 0.00 0.00 0.00 1.40
1702 1754 1.153353 CGTGTTTGGTTGCCGTATCT 58.847 50.000 0.00 0.00 0.00 1.98
1704 1756 1.577421 GCGTGTTTGGTTGCCGTAT 59.423 52.632 0.00 0.00 0.00 3.06
1728 1780 3.194968 CCTGGACACACCTACGAATAACT 59.805 47.826 0.00 0.00 39.86 2.24
1729 1781 3.518590 CCTGGACACACCTACGAATAAC 58.481 50.000 0.00 0.00 39.86 1.89
1731 1783 2.104967 CCCTGGACACACCTACGAATA 58.895 52.381 0.00 0.00 39.86 1.75
1732 1784 0.902531 CCCTGGACACACCTACGAAT 59.097 55.000 0.00 0.00 39.86 3.34
1733 1785 1.823169 GCCCTGGACACACCTACGAA 61.823 60.000 0.00 0.00 39.86 3.85
1734 1786 2.280552 GCCCTGGACACACCTACGA 61.281 63.158 0.00 0.00 39.86 3.43
1735 1787 2.227089 GAGCCCTGGACACACCTACG 62.227 65.000 0.00 0.00 39.86 3.51
1736 1788 1.192146 TGAGCCCTGGACACACCTAC 61.192 60.000 0.00 0.00 39.86 3.18
1737 1789 0.252696 ATGAGCCCTGGACACACCTA 60.253 55.000 0.00 0.00 39.86 3.08
1738 1790 1.136329 AATGAGCCCTGGACACACCT 61.136 55.000 0.00 0.00 39.86 4.00
1739 1791 0.678048 GAATGAGCCCTGGACACACC 60.678 60.000 0.00 0.00 39.54 4.16
1740 1792 0.678048 GGAATGAGCCCTGGACACAC 60.678 60.000 0.00 0.00 0.00 3.82
1741 1793 1.133181 TGGAATGAGCCCTGGACACA 61.133 55.000 0.00 0.00 0.00 3.72
1742 1794 0.393537 CTGGAATGAGCCCTGGACAC 60.394 60.000 0.00 0.00 0.00 3.67
1743 1795 0.547471 TCTGGAATGAGCCCTGGACA 60.547 55.000 0.00 0.00 0.00 4.02
1744 1796 0.620556 TTCTGGAATGAGCCCTGGAC 59.379 55.000 0.00 0.00 0.00 4.02
1745 1797 1.600058 ATTCTGGAATGAGCCCTGGA 58.400 50.000 0.00 0.00 0.00 3.86
1746 1798 3.484407 CTTATTCTGGAATGAGCCCTGG 58.516 50.000 6.13 0.00 29.60 4.45
1752 1804 3.217626 GGTGGGCTTATTCTGGAATGAG 58.782 50.000 9.74 9.74 37.44 2.90
1753 1805 2.091885 GGGTGGGCTTATTCTGGAATGA 60.092 50.000 6.13 0.00 32.50 2.57
1754 1806 2.310538 GGGTGGGCTTATTCTGGAATG 58.689 52.381 6.13 0.00 32.50 2.67
1755 1807 1.217942 GGGGTGGGCTTATTCTGGAAT 59.782 52.381 1.40 1.40 34.93 3.01
1756 1808 0.629058 GGGGTGGGCTTATTCTGGAA 59.371 55.000 0.00 0.00 0.00 3.53
1757 1809 1.286305 GGGGGTGGGCTTATTCTGGA 61.286 60.000 0.00 0.00 0.00 3.86
1758 1810 1.230212 GGGGGTGGGCTTATTCTGG 59.770 63.158 0.00 0.00 0.00 3.86
1759 1811 0.631212 AAGGGGGTGGGCTTATTCTG 59.369 55.000 0.00 0.00 0.00 3.02
1760 1812 0.631212 CAAGGGGGTGGGCTTATTCT 59.369 55.000 0.00 0.00 0.00 2.40
1761 1813 0.335019 ACAAGGGGGTGGGCTTATTC 59.665 55.000 0.00 0.00 0.00 1.75
1762 1814 0.041090 CACAAGGGGGTGGGCTTATT 59.959 55.000 0.00 0.00 35.13 1.40
1763 1815 1.146544 ACACAAGGGGGTGGGCTTAT 61.147 55.000 0.00 0.00 43.08 1.73
1764 1816 1.776710 ACACAAGGGGGTGGGCTTA 60.777 57.895 0.00 0.00 43.08 3.09
1765 1817 3.110031 ACACAAGGGGGTGGGCTT 61.110 61.111 0.00 0.00 43.08 4.35
1766 1818 3.902112 CACACAAGGGGGTGGGCT 61.902 66.667 0.00 0.00 43.08 5.19
1767 1819 3.749284 AACACACAAGGGGGTGGGC 62.749 63.158 1.84 0.00 46.17 5.36
1769 1821 1.199615 AAAAACACACAAGGGGGTGG 58.800 50.000 1.84 0.00 43.08 4.61
1787 1839 9.862371 TGAACAAAGTCAATTTACTTGCTTAAA 57.138 25.926 5.80 0.00 39.62 1.52
1789 1841 9.677567 GATGAACAAAGTCAATTTACTTGCTTA 57.322 29.630 5.80 0.00 39.62 3.09
1790 1842 8.416329 AGATGAACAAAGTCAATTTACTTGCTT 58.584 29.630 5.80 1.17 39.62 3.91
1791 1843 7.945134 AGATGAACAAAGTCAATTTACTTGCT 58.055 30.769 5.80 0.00 39.62 3.91
1792 1844 9.846248 ATAGATGAACAAAGTCAATTTACTTGC 57.154 29.630 5.80 0.00 39.62 4.01
1801 1853 9.119418 TGAAACTTGATAGATGAACAAAGTCAA 57.881 29.630 0.00 0.00 0.00 3.18
1802 1854 8.675705 TGAAACTTGATAGATGAACAAAGTCA 57.324 30.769 0.00 0.00 0.00 3.41
1871 1923 3.006003 ACACACCAACGGACAAAGTTTTT 59.994 39.130 0.00 0.00 0.00 1.94
1872 1924 2.559231 ACACACCAACGGACAAAGTTTT 59.441 40.909 0.00 0.00 0.00 2.43
1873 1925 2.164338 ACACACCAACGGACAAAGTTT 58.836 42.857 0.00 0.00 0.00 2.66
1874 1926 1.828979 ACACACCAACGGACAAAGTT 58.171 45.000 0.00 0.00 0.00 2.66
1875 1927 1.470890 CAACACACCAACGGACAAAGT 59.529 47.619 0.00 0.00 0.00 2.66
1876 1928 1.202245 CCAACACACCAACGGACAAAG 60.202 52.381 0.00 0.00 0.00 2.77
1877 1929 0.811915 CCAACACACCAACGGACAAA 59.188 50.000 0.00 0.00 0.00 2.83
1878 1930 1.032657 CCCAACACACCAACGGACAA 61.033 55.000 0.00 0.00 0.00 3.18
1879 1931 1.452289 CCCAACACACCAACGGACA 60.452 57.895 0.00 0.00 0.00 4.02
1880 1932 1.033202 AACCCAACACACCAACGGAC 61.033 55.000 0.00 0.00 0.00 4.79
1881 1933 1.032657 CAACCCAACACACCAACGGA 61.033 55.000 0.00 0.00 0.00 4.69
1882 1934 1.435515 CAACCCAACACACCAACGG 59.564 57.895 0.00 0.00 0.00 4.44
1883 1935 1.226831 GCAACCCAACACACCAACG 60.227 57.895 0.00 0.00 0.00 4.10
1884 1936 0.534873 AAGCAACCCAACACACCAAC 59.465 50.000 0.00 0.00 0.00 3.77
1885 1937 1.270907 AAAGCAACCCAACACACCAA 58.729 45.000 0.00 0.00 0.00 3.67
1886 1938 1.066573 CAAAAGCAACCCAACACACCA 60.067 47.619 0.00 0.00 0.00 4.17
1887 1939 1.650825 CAAAAGCAACCCAACACACC 58.349 50.000 0.00 0.00 0.00 4.16
1888 1940 1.006086 GCAAAAGCAACCCAACACAC 58.994 50.000 0.00 0.00 0.00 3.82
1889 1941 0.107945 GGCAAAAGCAACCCAACACA 60.108 50.000 0.00 0.00 0.00 3.72
1890 1942 0.813610 GGGCAAAAGCAACCCAACAC 60.814 55.000 0.00 0.00 43.64 3.32
1891 1943 1.524482 GGGCAAAAGCAACCCAACA 59.476 52.632 0.00 0.00 43.64 3.33
1892 1944 1.594021 CGGGCAAAAGCAACCCAAC 60.594 57.895 0.00 0.00 44.49 3.77
1893 1945 2.022240 GACGGGCAAAAGCAACCCAA 62.022 55.000 0.00 0.00 44.49 4.12
1894 1946 2.443016 ACGGGCAAAAGCAACCCA 60.443 55.556 0.00 0.00 44.49 4.51
1895 1947 1.815817 ATGACGGGCAAAAGCAACCC 61.816 55.000 0.00 0.00 40.51 4.11
1896 1948 0.033366 AATGACGGGCAAAAGCAACC 59.967 50.000 0.00 0.00 0.00 3.77
1897 1949 1.269517 TGAATGACGGGCAAAAGCAAC 60.270 47.619 0.00 0.00 0.00 4.17
1898 1950 1.035923 TGAATGACGGGCAAAAGCAA 58.964 45.000 0.00 0.00 0.00 3.91
1899 1951 1.202114 GATGAATGACGGGCAAAAGCA 59.798 47.619 0.00 0.00 0.00 3.91
1900 1952 1.202114 TGATGAATGACGGGCAAAAGC 59.798 47.619 0.00 0.00 0.00 3.51
1901 1953 3.504863 CTTGATGAATGACGGGCAAAAG 58.495 45.455 0.00 0.00 0.00 2.27
1902 1954 2.352617 GCTTGATGAATGACGGGCAAAA 60.353 45.455 0.00 0.00 0.00 2.44
1903 1955 1.202114 GCTTGATGAATGACGGGCAAA 59.798 47.619 0.00 0.00 0.00 3.68
1904 1956 0.810648 GCTTGATGAATGACGGGCAA 59.189 50.000 0.00 0.00 0.00 4.52
1905 1957 0.035152 AGCTTGATGAATGACGGGCA 60.035 50.000 0.00 0.00 0.00 5.36
1906 1958 1.098050 AAGCTTGATGAATGACGGGC 58.902 50.000 0.00 0.00 0.00 6.13
1907 1959 2.159338 CCAAAGCTTGATGAATGACGGG 60.159 50.000 0.00 0.00 0.00 5.28
1908 1960 2.489329 ACCAAAGCTTGATGAATGACGG 59.511 45.455 0.00 0.00 0.00 4.79
1909 1961 3.189080 TGACCAAAGCTTGATGAATGACG 59.811 43.478 0.00 0.00 0.00 4.35
1910 1962 4.479619 GTGACCAAAGCTTGATGAATGAC 58.520 43.478 0.00 0.00 0.00 3.06
1911 1963 3.189080 CGTGACCAAAGCTTGATGAATGA 59.811 43.478 0.00 0.00 0.00 2.57
1912 1964 3.189080 TCGTGACCAAAGCTTGATGAATG 59.811 43.478 0.00 0.00 0.00 2.67
1913 1965 3.411446 TCGTGACCAAAGCTTGATGAAT 58.589 40.909 0.00 0.00 0.00 2.57
1914 1966 2.807967 CTCGTGACCAAAGCTTGATGAA 59.192 45.455 0.00 0.00 0.00 2.57
1915 1967 2.416747 CTCGTGACCAAAGCTTGATGA 58.583 47.619 0.00 0.00 0.00 2.92
1916 1968 1.466167 CCTCGTGACCAAAGCTTGATG 59.534 52.381 0.00 0.00 0.00 3.07
1917 1969 1.611673 CCCTCGTGACCAAAGCTTGAT 60.612 52.381 0.00 0.00 0.00 2.57
1918 1970 0.250295 CCCTCGTGACCAAAGCTTGA 60.250 55.000 0.00 0.00 0.00 3.02
1919 1971 0.535102 ACCCTCGTGACCAAAGCTTG 60.535 55.000 0.00 0.00 0.00 4.01
1920 1972 0.250338 GACCCTCGTGACCAAAGCTT 60.250 55.000 0.00 0.00 0.00 3.74
1921 1973 1.371558 GACCCTCGTGACCAAAGCT 59.628 57.895 0.00 0.00 0.00 3.74
1922 1974 0.321653 ATGACCCTCGTGACCAAAGC 60.322 55.000 0.00 0.00 0.00 3.51
1923 1975 2.185004 AATGACCCTCGTGACCAAAG 57.815 50.000 0.00 0.00 0.00 2.77
1924 1976 2.649531 AAATGACCCTCGTGACCAAA 57.350 45.000 0.00 0.00 0.00 3.28
1925 1977 2.027561 CCTAAATGACCCTCGTGACCAA 60.028 50.000 0.00 0.00 0.00 3.67
1926 1978 1.553248 CCTAAATGACCCTCGTGACCA 59.447 52.381 0.00 0.00 0.00 4.02
1927 1979 1.742750 GCCTAAATGACCCTCGTGACC 60.743 57.143 0.00 0.00 0.00 4.02
1928 1980 1.207329 AGCCTAAATGACCCTCGTGAC 59.793 52.381 0.00 0.00 0.00 3.67
1929 1981 1.207089 CAGCCTAAATGACCCTCGTGA 59.793 52.381 0.00 0.00 0.00 4.35
1930 1982 1.656652 CAGCCTAAATGACCCTCGTG 58.343 55.000 0.00 0.00 0.00 4.35
1931 1983 0.541863 CCAGCCTAAATGACCCTCGT 59.458 55.000 0.00 0.00 0.00 4.18
1932 1984 0.179045 CCCAGCCTAAATGACCCTCG 60.179 60.000 0.00 0.00 0.00 4.63
1933 1985 0.466372 GCCCAGCCTAAATGACCCTC 60.466 60.000 0.00 0.00 0.00 4.30
1934 1986 0.921256 AGCCCAGCCTAAATGACCCT 60.921 55.000 0.00 0.00 0.00 4.34
1935 1987 0.033109 AAGCCCAGCCTAAATGACCC 60.033 55.000 0.00 0.00 0.00 4.46
1936 1988 1.852633 AAAGCCCAGCCTAAATGACC 58.147 50.000 0.00 0.00 0.00 4.02
1937 1989 3.378427 CACTAAAGCCCAGCCTAAATGAC 59.622 47.826 0.00 0.00 0.00 3.06
1938 1990 3.620488 CACTAAAGCCCAGCCTAAATGA 58.380 45.455 0.00 0.00 0.00 2.57
1939 1991 2.099756 GCACTAAAGCCCAGCCTAAATG 59.900 50.000 0.00 0.00 0.00 2.32
1940 1992 2.379005 GCACTAAAGCCCAGCCTAAAT 58.621 47.619 0.00 0.00 0.00 1.40
1941 1993 1.834188 GCACTAAAGCCCAGCCTAAA 58.166 50.000 0.00 0.00 0.00 1.85
1942 1994 0.392461 CGCACTAAAGCCCAGCCTAA 60.392 55.000 0.00 0.00 0.00 2.69
1943 1995 1.220749 CGCACTAAAGCCCAGCCTA 59.779 57.895 0.00 0.00 0.00 3.93
1944 1996 2.045926 CGCACTAAAGCCCAGCCT 60.046 61.111 0.00 0.00 0.00 4.58
1945 1997 1.971695 AACGCACTAAAGCCCAGCC 60.972 57.895 0.00 0.00 0.00 4.85
1946 1998 1.210155 CAACGCACTAAAGCCCAGC 59.790 57.895 0.00 0.00 0.00 4.85
1947 1999 1.875963 CCAACGCACTAAAGCCCAG 59.124 57.895 0.00 0.00 0.00 4.45
1948 2000 2.265182 GCCAACGCACTAAAGCCCA 61.265 57.895 0.00 0.00 34.03 5.36
1949 2001 1.524008 AAGCCAACGCACTAAAGCCC 61.524 55.000 0.00 0.00 37.52 5.19
1950 2002 0.387239 CAAGCCAACGCACTAAAGCC 60.387 55.000 0.00 0.00 37.52 4.35
1951 2003 0.310854 ACAAGCCAACGCACTAAAGC 59.689 50.000 0.00 0.00 37.52 3.51
1952 2004 2.774439 AACAAGCCAACGCACTAAAG 57.226 45.000 0.00 0.00 37.52 1.85
1953 2005 3.119459 TGAAAACAAGCCAACGCACTAAA 60.119 39.130 0.00 0.00 37.52 1.85
1954 2006 2.423892 TGAAAACAAGCCAACGCACTAA 59.576 40.909 0.00 0.00 37.52 2.24
1955 2007 2.017782 TGAAAACAAGCCAACGCACTA 58.982 42.857 0.00 0.00 37.52 2.74
1956 2008 0.814457 TGAAAACAAGCCAACGCACT 59.186 45.000 0.00 0.00 37.52 4.40
1957 2009 1.199624 CTGAAAACAAGCCAACGCAC 58.800 50.000 0.00 0.00 37.52 5.34
1958 2010 0.102120 CCTGAAAACAAGCCAACGCA 59.898 50.000 0.00 0.00 37.52 5.24
1959 2011 0.102300 ACCTGAAAACAAGCCAACGC 59.898 50.000 0.00 0.00 0.00 4.84
1960 2012 2.577449 AACCTGAAAACAAGCCAACG 57.423 45.000 0.00 0.00 0.00 4.10
1961 2013 5.815222 ACAAATAACCTGAAAACAAGCCAAC 59.185 36.000 0.00 0.00 0.00 3.77
1962 2014 5.983540 ACAAATAACCTGAAAACAAGCCAA 58.016 33.333 0.00 0.00 0.00 4.52
1963 2015 5.606348 ACAAATAACCTGAAAACAAGCCA 57.394 34.783 0.00 0.00 0.00 4.75
1964 2016 6.918892 AAACAAATAACCTGAAAACAAGCC 57.081 33.333 0.00 0.00 0.00 4.35
1965 2017 7.969314 TGAAAACAAATAACCTGAAAACAAGC 58.031 30.769 0.00 0.00 0.00 4.01
1966 2018 8.603181 CCTGAAAACAAATAACCTGAAAACAAG 58.397 33.333 0.00 0.00 0.00 3.16
1967 2019 8.097662 ACCTGAAAACAAATAACCTGAAAACAA 58.902 29.630 0.00 0.00 0.00 2.83
1968 2020 7.616313 ACCTGAAAACAAATAACCTGAAAACA 58.384 30.769 0.00 0.00 0.00 2.83
1969 2021 8.387354 CAACCTGAAAACAAATAACCTGAAAAC 58.613 33.333 0.00 0.00 0.00 2.43
1970 2022 8.097662 ACAACCTGAAAACAAATAACCTGAAAA 58.902 29.630 0.00 0.00 0.00 2.29
1971 2023 7.616313 ACAACCTGAAAACAAATAACCTGAAA 58.384 30.769 0.00 0.00 0.00 2.69
1972 2024 7.176589 ACAACCTGAAAACAAATAACCTGAA 57.823 32.000 0.00 0.00 0.00 3.02
1973 2025 6.783708 ACAACCTGAAAACAAATAACCTGA 57.216 33.333 0.00 0.00 0.00 3.86
1974 2026 6.238076 GCAACAACCTGAAAACAAATAACCTG 60.238 38.462 0.00 0.00 0.00 4.00
1975 2027 5.815222 GCAACAACCTGAAAACAAATAACCT 59.185 36.000 0.00 0.00 0.00 3.50
1976 2028 5.815222 AGCAACAACCTGAAAACAAATAACC 59.185 36.000 0.00 0.00 0.00 2.85
1977 2029 6.902224 AGCAACAACCTGAAAACAAATAAC 57.098 33.333 0.00 0.00 0.00 1.89
1978 2030 6.536941 GGAAGCAACAACCTGAAAACAAATAA 59.463 34.615 0.00 0.00 0.00 1.40
1979 2031 6.045955 GGAAGCAACAACCTGAAAACAAATA 58.954 36.000 0.00 0.00 0.00 1.40
1980 2032 4.875536 GGAAGCAACAACCTGAAAACAAAT 59.124 37.500 0.00 0.00 0.00 2.32
1981 2033 4.020662 AGGAAGCAACAACCTGAAAACAAA 60.021 37.500 0.00 0.00 32.39 2.83
1982 2034 3.513515 AGGAAGCAACAACCTGAAAACAA 59.486 39.130 0.00 0.00 32.39 2.83
1983 2035 3.096092 AGGAAGCAACAACCTGAAAACA 58.904 40.909 0.00 0.00 32.39 2.83
1984 2036 3.801114 AGGAAGCAACAACCTGAAAAC 57.199 42.857 0.00 0.00 32.39 2.43
1985 2037 5.596361 TGAATAGGAAGCAACAACCTGAAAA 59.404 36.000 0.00 0.00 35.52 2.29
1986 2038 5.136828 TGAATAGGAAGCAACAACCTGAAA 58.863 37.500 0.00 0.00 35.52 2.69
1987 2039 4.724399 TGAATAGGAAGCAACAACCTGAA 58.276 39.130 0.00 0.00 35.52 3.02
1988 2040 4.326826 CTGAATAGGAAGCAACAACCTGA 58.673 43.478 0.00 0.00 35.52 3.86
1989 2041 3.119708 GCTGAATAGGAAGCAACAACCTG 60.120 47.826 0.00 0.00 39.31 4.00
1990 2042 3.084786 GCTGAATAGGAAGCAACAACCT 58.915 45.455 0.00 0.00 39.31 3.50
1991 2043 3.084786 AGCTGAATAGGAAGCAACAACC 58.915 45.455 0.00 0.00 42.06 3.77
1992 2044 3.181516 CGAGCTGAATAGGAAGCAACAAC 60.182 47.826 0.00 0.00 42.06 3.32
1993 2045 3.002791 CGAGCTGAATAGGAAGCAACAA 58.997 45.455 0.00 0.00 42.06 2.83
1994 2046 2.233676 TCGAGCTGAATAGGAAGCAACA 59.766 45.455 0.00 0.00 42.06 3.33
1995 2047 2.893637 TCGAGCTGAATAGGAAGCAAC 58.106 47.619 0.00 0.00 42.06 4.17
1996 2048 3.132824 TGATCGAGCTGAATAGGAAGCAA 59.867 43.478 0.90 0.00 42.06 3.91
1997 2049 2.695147 TGATCGAGCTGAATAGGAAGCA 59.305 45.455 0.90 0.00 42.06 3.91
1998 2050 3.316283 CTGATCGAGCTGAATAGGAAGC 58.684 50.000 0.90 0.00 39.82 3.86
1999 2051 3.860378 GCCTGATCGAGCTGAATAGGAAG 60.860 52.174 9.30 0.00 36.41 3.46
2000 2052 2.036475 GCCTGATCGAGCTGAATAGGAA 59.964 50.000 9.30 0.00 36.41 3.36
2001 2053 1.615883 GCCTGATCGAGCTGAATAGGA 59.384 52.381 9.30 0.00 36.41 2.94
2002 2054 1.342496 TGCCTGATCGAGCTGAATAGG 59.658 52.381 9.30 4.35 37.03 2.57
2003 2055 2.402305 GTGCCTGATCGAGCTGAATAG 58.598 52.381 9.30 0.00 0.00 1.73
2004 2056 1.269257 CGTGCCTGATCGAGCTGAATA 60.269 52.381 9.30 0.00 0.00 1.75
2005 2057 0.529337 CGTGCCTGATCGAGCTGAAT 60.529 55.000 9.30 0.00 0.00 2.57
2006 2058 1.153765 CGTGCCTGATCGAGCTGAA 60.154 57.895 9.30 0.00 0.00 3.02
2007 2059 1.029947 TACGTGCCTGATCGAGCTGA 61.030 55.000 9.30 0.00 0.00 4.26
2008 2060 0.867753 GTACGTGCCTGATCGAGCTG 60.868 60.000 0.90 0.38 0.00 4.24
2009 2061 1.032657 AGTACGTGCCTGATCGAGCT 61.033 55.000 0.90 0.00 0.00 4.09
2010 2062 0.867753 CAGTACGTGCCTGATCGAGC 60.868 60.000 10.58 0.00 31.38 5.03
2011 2063 3.242268 CAGTACGTGCCTGATCGAG 57.758 57.895 10.58 0.00 31.38 4.04
2021 2073 0.859232 ACAAAAGCGAGCAGTACGTG 59.141 50.000 0.00 0.00 0.00 4.49
2022 2074 1.525619 GAACAAAAGCGAGCAGTACGT 59.474 47.619 0.00 0.00 0.00 3.57
2023 2075 1.460267 CGAACAAAAGCGAGCAGTACG 60.460 52.381 0.00 0.00 0.00 3.67
2024 2076 1.525619 ACGAACAAAAGCGAGCAGTAC 59.474 47.619 0.00 0.00 0.00 2.73
2025 2077 1.860676 ACGAACAAAAGCGAGCAGTA 58.139 45.000 0.00 0.00 0.00 2.74
2026 2078 1.014352 AACGAACAAAAGCGAGCAGT 58.986 45.000 0.00 0.00 0.00 4.40
2027 2079 1.775208 CAAACGAACAAAAGCGAGCAG 59.225 47.619 0.00 0.00 0.00 4.24
2028 2080 1.131504 ACAAACGAACAAAAGCGAGCA 59.868 42.857 0.00 0.00 0.00 4.26
2029 2081 1.822581 ACAAACGAACAAAAGCGAGC 58.177 45.000 0.00 0.00 0.00 5.03
2030 2082 4.816277 AAAACAAACGAACAAAAGCGAG 57.184 36.364 0.00 0.00 0.00 5.03
2065 2117 7.319646 AGACAACAAACAAGTATCAGCAAAAA 58.680 30.769 0.00 0.00 0.00 1.94
2066 2118 6.862209 AGACAACAAACAAGTATCAGCAAAA 58.138 32.000 0.00 0.00 0.00 2.44
2067 2119 6.449635 AGACAACAAACAAGTATCAGCAAA 57.550 33.333 0.00 0.00 0.00 3.68
2068 2120 6.264832 CAAGACAACAAACAAGTATCAGCAA 58.735 36.000 0.00 0.00 0.00 3.91
2069 2121 5.221028 CCAAGACAACAAACAAGTATCAGCA 60.221 40.000 0.00 0.00 0.00 4.41
2070 2122 5.215160 CCAAGACAACAAACAAGTATCAGC 58.785 41.667 0.00 0.00 0.00 4.26
2071 2123 6.377327 ACCAAGACAACAAACAAGTATCAG 57.623 37.500 0.00 0.00 0.00 2.90
2072 2124 7.867305 TTACCAAGACAACAAACAAGTATCA 57.133 32.000 0.00 0.00 0.00 2.15
2073 2125 9.575783 TTTTTACCAAGACAACAAACAAGTATC 57.424 29.630 0.00 0.00 0.00 2.24
2211 2263 8.419076 AAAAACAATGTATTCGCTCACTTTTT 57.581 26.923 0.00 0.00 0.00 1.94
2257 2309 7.462109 TTCGTCATCTTTTTCCAAATTGTTG 57.538 32.000 0.00 0.00 34.25 3.33
2258 2310 8.661352 AATTCGTCATCTTTTTCCAAATTGTT 57.339 26.923 0.00 0.00 0.00 2.83
2259 2311 9.757227 TTAATTCGTCATCTTTTTCCAAATTGT 57.243 25.926 0.00 0.00 0.00 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.