Multiple sequence alignment - TraesCS3A01G106500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G106500 chr3A 100.000 2717 0 0 1 2717 70731766 70729050 0.000000e+00 5018
1 TraesCS3A01G106500 chr3D 88.423 2004 97 53 264 2223 61704375 61702463 0.000000e+00 2290
2 TraesCS3A01G106500 chr3D 82.540 252 30 9 1 250 61704599 61704360 2.740000e-50 209
3 TraesCS3A01G106500 chr3B 86.050 2258 111 81 264 2407 99172430 99170263 0.000000e+00 2237
4 TraesCS3A01G106500 chr3B 89.231 260 18 4 1 250 99172674 99172415 1.570000e-82 316
5 TraesCS3A01G106500 chr6A 87.222 180 19 4 1118 1294 520355710 520355532 4.590000e-48 202
6 TraesCS3A01G106500 chr6A 88.136 118 10 2 2601 2715 419600040 419599924 1.310000e-28 137
7 TraesCS3A01G106500 chr6A 86.441 118 12 2 2601 2715 419632604 419632488 2.840000e-25 126
8 TraesCS3A01G106500 chr6A 86.441 118 12 2 2601 2715 419642798 419642682 2.840000e-25 126
9 TraesCS3A01G106500 chr6A 84.746 118 14 2 2601 2715 419671487 419671371 6.150000e-22 115
10 TraesCS3A01G106500 chr5A 83.036 224 27 9 1054 1267 467585769 467585991 2.760000e-45 193
11 TraesCS3A01G106500 chr6D 87.730 163 18 2 1118 1279 378379440 378379279 3.570000e-44 189
12 TraesCS3A01G106500 chr7D 85.246 183 21 6 1118 1296 174992614 174992794 1.660000e-42 183
13 TraesCS3A01G106500 chr7B 85.556 180 20 6 1117 1292 140652906 140653083 1.660000e-42 183
14 TraesCS3A01G106500 chr7A 85.556 180 20 6 1118 1293 177136164 177136341 1.660000e-42 183
15 TraesCS3A01G106500 chr6B 85.000 180 23 3 1118 1294 564993598 564993420 2.150000e-41 180
16 TraesCS3A01G106500 chr4D 91.379 116 8 2 2601 2715 3691070 3691184 1.010000e-34 158
17 TraesCS3A01G106500 chr4A 90.678 118 7 4 2601 2715 618414631 618414515 1.300000e-33 154
18 TraesCS3A01G106500 chr2B 90.517 116 10 1 2600 2715 11443355 11443241 4.690000e-33 152
19 TraesCS3A01G106500 chr1B 87.826 115 9 3 2601 2715 533820025 533819916 2.200000e-26 130
20 TraesCS3A01G106500 chr2A 85.047 107 13 2 2610 2715 24362579 24362475 3.700000e-19 106


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G106500 chr3A 70729050 70731766 2716 True 5018.0 5018 100.0000 1 2717 1 chr3A.!!$R1 2716
1 TraesCS3A01G106500 chr3D 61702463 61704599 2136 True 1249.5 2290 85.4815 1 2223 2 chr3D.!!$R1 2222
2 TraesCS3A01G106500 chr3B 99170263 99172674 2411 True 1276.5 2237 87.6405 1 2407 2 chr3B.!!$R1 2406

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
495 553 0.259065 ACCACGCAGAGGAGAGGATA 59.741 55.0 0.0 0.0 42.26 2.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2465 2602 0.111253 CCAGTGGGCTTCAAGGAAGT 59.889 55.0 0.0 0.0 41.27 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 1.463214 TTGGTCTCCAAGGCCTCCA 60.463 57.895 5.23 4.79 41.63 3.86
40 41 2.271497 CTCCAAGGCCTCCAGCAG 59.729 66.667 5.23 0.00 46.50 4.24
72 73 1.179174 TGACTCACCTGACCTGACCG 61.179 60.000 0.00 0.00 0.00 4.79
74 75 3.302347 CTCACCTGACCTGACCGGC 62.302 68.421 0.00 0.00 35.61 6.13
153 164 1.898902 GCTAGGAGTAGCCTCGATCA 58.101 55.000 0.00 0.00 46.97 2.92
159 170 1.951631 GTAGCCTCGATCAAGCCGC 60.952 63.158 0.00 0.00 0.00 6.53
165 176 3.853330 CGATCAAGCCGCCGTGTG 61.853 66.667 0.00 0.00 0.00 3.82
189 200 2.293677 TCAACATCGGTCTGGATTCG 57.706 50.000 0.00 0.00 0.00 3.34
198 209 2.278857 CTGGATTCGTCGCTCCGG 60.279 66.667 0.00 0.00 34.05 5.14
200 211 3.524606 GGATTCGTCGCTCCGGGA 61.525 66.667 0.00 0.00 0.00 5.14
201 212 2.278661 GATTCGTCGCTCCGGGAC 60.279 66.667 0.00 0.00 41.19 4.46
242 253 4.884164 CCAACAGTCAAGAGGAAGAAACTT 59.116 41.667 0.00 0.00 0.00 2.66
243 254 5.220931 CCAACAGTCAAGAGGAAGAAACTTG 60.221 44.000 0.00 0.00 41.27 3.16
244 255 3.879892 ACAGTCAAGAGGAAGAAACTTGC 59.120 43.478 0.00 0.00 40.20 4.01
245 256 3.251972 CAGTCAAGAGGAAGAAACTTGCC 59.748 47.826 0.00 0.00 40.20 4.52
246 257 3.117888 AGTCAAGAGGAAGAAACTTGCCA 60.118 43.478 0.00 0.00 40.20 4.92
247 258 3.823304 GTCAAGAGGAAGAAACTTGCCAT 59.177 43.478 0.00 0.00 40.20 4.40
248 259 3.822735 TCAAGAGGAAGAAACTTGCCATG 59.177 43.478 0.00 0.00 40.20 3.66
249 260 2.165998 AGAGGAAGAAACTTGCCATGC 58.834 47.619 0.00 0.00 0.00 4.06
250 261 0.883833 AGGAAGAAACTTGCCATGCG 59.116 50.000 0.00 0.00 0.00 4.73
251 262 0.881118 GGAAGAAACTTGCCATGCGA 59.119 50.000 0.00 0.00 0.00 5.10
252 263 1.269448 GGAAGAAACTTGCCATGCGAA 59.731 47.619 0.00 0.00 0.00 4.70
253 264 2.319472 GAAGAAACTTGCCATGCGAAC 58.681 47.619 0.00 0.00 0.00 3.95
254 265 1.609208 AGAAACTTGCCATGCGAACT 58.391 45.000 0.00 0.00 0.00 3.01
255 266 1.537202 AGAAACTTGCCATGCGAACTC 59.463 47.619 0.00 0.00 0.00 3.01
256 267 1.537202 GAAACTTGCCATGCGAACTCT 59.463 47.619 0.00 0.00 0.00 3.24
257 268 2.472695 AACTTGCCATGCGAACTCTA 57.527 45.000 0.00 0.00 0.00 2.43
258 269 2.472695 ACTTGCCATGCGAACTCTAA 57.527 45.000 0.00 0.00 0.00 2.10
259 270 2.778299 ACTTGCCATGCGAACTCTAAA 58.222 42.857 0.00 0.00 0.00 1.85
260 271 3.146066 ACTTGCCATGCGAACTCTAAAA 58.854 40.909 0.00 0.00 0.00 1.52
261 272 3.568007 ACTTGCCATGCGAACTCTAAAAA 59.432 39.130 0.00 0.00 0.00 1.94
285 298 2.129607 GAAACTTGCCATGCACTTGTG 58.870 47.619 0.00 0.00 38.71 3.33
342 356 8.598202 AAACGGAATGGGGTTAAAAATAGTAT 57.402 30.769 0.00 0.00 0.00 2.12
343 357 9.697990 AAACGGAATGGGGTTAAAAATAGTATA 57.302 29.630 0.00 0.00 0.00 1.47
344 358 9.697990 AACGGAATGGGGTTAAAAATAGTATAA 57.302 29.630 0.00 0.00 0.00 0.98
345 359 9.871175 ACGGAATGGGGTTAAAAATAGTATAAT 57.129 29.630 0.00 0.00 0.00 1.28
388 426 4.211389 CAGATGTTTCGTGTTTGTGCTAC 58.789 43.478 0.00 0.00 0.00 3.58
392 430 3.062909 TGTTTCGTGTTTGTGCTACTCAC 59.937 43.478 0.00 0.00 45.82 3.51
413 454 8.939929 ACTCACAATCATTGTTACAATCTACAG 58.060 33.333 7.71 0.00 43.23 2.74
416 457 8.896744 CACAATCATTGTTACAATCTACAGGAT 58.103 33.333 7.71 4.32 43.23 3.24
417 458 8.896744 ACAATCATTGTTACAATCTACAGGATG 58.103 33.333 7.71 5.19 42.22 3.51
445 503 2.643044 CTCAACGTACGAGCTGCTC 58.357 57.895 24.41 19.53 0.00 4.26
495 553 0.259065 ACCACGCAGAGGAGAGGATA 59.741 55.000 0.00 0.00 42.26 2.59
496 554 0.958091 CCACGCAGAGGAGAGGATAG 59.042 60.000 0.00 0.00 42.26 2.08
497 555 1.477740 CCACGCAGAGGAGAGGATAGA 60.478 57.143 0.00 0.00 42.26 1.98
498 556 1.879380 CACGCAGAGGAGAGGATAGAG 59.121 57.143 0.00 0.00 0.00 2.43
499 557 1.771854 ACGCAGAGGAGAGGATAGAGA 59.228 52.381 0.00 0.00 0.00 3.10
500 558 2.375174 ACGCAGAGGAGAGGATAGAGAT 59.625 50.000 0.00 0.00 0.00 2.75
501 559 3.181434 ACGCAGAGGAGAGGATAGAGATT 60.181 47.826 0.00 0.00 0.00 2.40
542 600 1.595093 GGAATCAAACGGTGCAGGGG 61.595 60.000 0.00 0.00 0.00 4.79
544 602 2.075355 AATCAAACGGTGCAGGGGGA 62.075 55.000 0.00 0.00 0.00 4.81
551 609 2.665603 GTGCAGGGGGAGTCAGAC 59.334 66.667 0.00 0.00 0.00 3.51
621 688 2.352225 CCTCTCGTCTTTGACTGGAGTG 60.352 54.545 12.10 6.77 31.93 3.51
626 697 2.760374 GTCTTTGACTGGAGTGTCTGG 58.240 52.381 0.00 0.00 37.79 3.86
637 708 0.908656 AGTGTCTGGGATGCTGAGCT 60.909 55.000 5.83 0.00 0.00 4.09
641 712 3.457625 CTGGGATGCTGAGCTCCGG 62.458 68.421 12.15 6.25 31.95 5.14
698 769 1.106944 CGGGACAAACCACAGCCTTT 61.107 55.000 0.00 0.00 41.20 3.11
779 851 1.228124 TGTTCAAACTGCCCCTCCG 60.228 57.895 0.00 0.00 0.00 4.63
781 853 3.860930 TTCAAACTGCCCCTCCGCC 62.861 63.158 0.00 0.00 0.00 6.13
782 854 4.351054 CAAACTGCCCCTCCGCCT 62.351 66.667 0.00 0.00 0.00 5.52
783 855 4.351054 AAACTGCCCCTCCGCCTG 62.351 66.667 0.00 0.00 0.00 4.85
793 866 3.602513 CTCCGCCTGTCAGCTTGCT 62.603 63.158 0.00 0.00 0.00 3.91
794 867 3.123620 CCGCCTGTCAGCTTGCTC 61.124 66.667 0.00 0.00 0.00 4.26
795 868 2.047465 CGCCTGTCAGCTTGCTCT 60.047 61.111 0.00 0.00 0.00 4.09
796 869 2.389020 CGCCTGTCAGCTTGCTCTG 61.389 63.158 0.00 0.00 35.46 3.35
800 873 0.887836 CTGTCAGCTTGCTCTGCCAA 60.888 55.000 0.00 0.00 34.19 4.52
811 884 1.461268 TCTGCCAACCCACCAGAGA 60.461 57.895 0.00 0.00 32.30 3.10
812 885 0.842030 TCTGCCAACCCACCAGAGAT 60.842 55.000 0.00 0.00 32.30 2.75
886 977 3.181440 ACTTCCATTGTCTTCTTCCTGCA 60.181 43.478 0.00 0.00 0.00 4.41
933 1024 1.430632 CGCGCCATCTTCTTGCAAT 59.569 52.632 0.00 0.00 0.00 3.56
935 1026 0.737219 GCGCCATCTTCTTGCAATCT 59.263 50.000 0.00 0.00 0.00 2.40
936 1027 1.268437 GCGCCATCTTCTTGCAATCTC 60.268 52.381 0.00 0.00 0.00 2.75
937 1028 2.011947 CGCCATCTTCTTGCAATCTCA 58.988 47.619 0.00 0.00 0.00 3.27
938 1029 2.031807 CGCCATCTTCTTGCAATCTCAG 59.968 50.000 0.00 0.00 0.00 3.35
944 1035 4.245660 TCTTCTTGCAATCTCAGTTACCG 58.754 43.478 0.00 0.00 0.00 4.02
950 1041 2.699954 CAATCTCAGTTACCGGCAAGT 58.300 47.619 0.00 0.00 0.00 3.16
963 1054 0.869454 GGCAAGTGAGAGCTCGATCG 60.869 60.000 9.36 9.36 0.00 3.69
964 1055 0.869454 GCAAGTGAGAGCTCGATCGG 60.869 60.000 16.41 7.26 0.00 4.18
1047 1138 3.775654 GAGGCGGAGGAGGTGGTG 61.776 72.222 0.00 0.00 0.00 4.17
1471 1577 3.672295 GAGCTGACCTTCCTGCCGG 62.672 68.421 0.00 0.00 0.00 6.13
1587 1693 2.946762 GCCACCAGCTTCGTGTTC 59.053 61.111 9.32 0.00 38.99 3.18
1774 1880 1.233019 GCCAAGATCATGGATGACGG 58.767 55.000 21.00 0.00 43.54 4.79
1827 1954 3.367992 TCGTTGACGGTAGCTTGTTAA 57.632 42.857 3.48 0.00 40.29 2.01
1839 1966 7.874528 ACGGTAGCTTGTTAATTAGTGTTACTT 59.125 33.333 0.00 0.00 0.00 2.24
1906 2037 3.384668 TCGAAGCGATCTTGATCAATCC 58.615 45.455 8.96 0.48 31.48 3.01
1922 2053 0.595588 ATCCGTCAGAGCTAGCGATG 59.404 55.000 9.55 12.25 0.00 3.84
1961 2093 1.808411 TCGTTCAGGAGAAATGGTGC 58.192 50.000 0.00 0.00 35.08 5.01
1975 2107 0.172578 TGGTGCGGTTATGAGAGTCG 59.827 55.000 0.00 0.00 0.00 4.18
2026 2158 6.050454 TGTTAATCCGTGTGTTTTGTACTG 57.950 37.500 0.00 0.00 0.00 2.74
2027 2159 5.585445 TGTTAATCCGTGTGTTTTGTACTGT 59.415 36.000 0.00 0.00 0.00 3.55
2028 2160 4.545823 AATCCGTGTGTTTTGTACTGTG 57.454 40.909 0.00 0.00 0.00 3.66
2041 2173 1.873270 TACTGTGTCCGCGACTGCAT 61.873 55.000 8.23 0.00 42.97 3.96
2042 2174 2.733671 CTGTGTCCGCGACTGCATG 61.734 63.158 8.23 0.00 42.97 4.06
2043 2175 4.152625 GTGTCCGCGACTGCATGC 62.153 66.667 11.82 11.82 42.97 4.06
2044 2176 4.678499 TGTCCGCGACTGCATGCA 62.678 61.111 21.29 21.29 42.97 3.96
2045 2177 3.197790 GTCCGCGACTGCATGCAT 61.198 61.111 22.97 11.62 42.97 3.96
2046 2178 3.197092 TCCGCGACTGCATGCATG 61.197 61.111 22.97 22.70 42.97 4.06
2047 2179 4.246206 CCGCGACTGCATGCATGG 62.246 66.667 27.34 13.40 42.97 3.66
2048 2180 3.502455 CGCGACTGCATGCATGGT 61.502 61.111 27.34 16.97 42.97 3.55
2049 2181 2.406401 GCGACTGCATGCATGGTC 59.594 61.111 27.34 23.25 42.15 4.02
2089 2221 2.480419 CCAAGCGTAGAACTGAAACTGG 59.520 50.000 0.00 0.00 0.00 4.00
2090 2222 3.390135 CAAGCGTAGAACTGAAACTGGA 58.610 45.455 0.00 0.00 0.00 3.86
2091 2223 3.746045 AGCGTAGAACTGAAACTGGAA 57.254 42.857 0.00 0.00 0.00 3.53
2092 2224 3.391049 AGCGTAGAACTGAAACTGGAAC 58.609 45.455 0.00 0.00 0.00 3.62
2093 2225 3.069729 AGCGTAGAACTGAAACTGGAACT 59.930 43.478 0.00 0.00 0.00 3.01
2094 2226 3.184581 GCGTAGAACTGAAACTGGAACTG 59.815 47.826 0.00 0.00 0.00 3.16
2106 2238 2.196749 CTGGAACTGATGGAACGATCG 58.803 52.381 14.88 14.88 0.00 3.69
2139 2271 7.591006 AGCTTATTGATGTTGAAAATGCAAG 57.409 32.000 0.00 0.00 0.00 4.01
2149 2281 5.580297 TGTTGAAAATGCAAGTCTTGTTTCC 59.420 36.000 17.78 9.04 0.00 3.13
2171 2304 6.913170 TCCTTTGATTTCACTAGTTGAATGC 58.087 36.000 0.00 0.00 43.99 3.56
2201 2334 9.494271 TCATTATAGCACTTCATTATTGTCTCC 57.506 33.333 0.00 0.00 0.00 3.71
2225 2358 3.469899 TCTTTGTCGATGCGATTTTGG 57.530 42.857 0.00 0.00 38.42 3.28
2231 2364 0.305922 CGATGCGATTTTGGAGCTCC 59.694 55.000 26.78 26.78 0.00 4.70
2232 2365 0.305922 GATGCGATTTTGGAGCTCCG 59.694 55.000 27.43 15.18 39.43 4.63
2240 2374 0.035439 TTTGGAGCTCCGGATTGACC 60.035 55.000 27.43 7.39 39.43 4.02
2260 2394 4.886579 ACCATTTGCTCAAGATTTTCCAC 58.113 39.130 0.00 0.00 0.00 4.02
2268 2402 3.556999 TCAAGATTTTCCACCGGTTCAA 58.443 40.909 2.97 0.00 0.00 2.69
2269 2403 3.954904 TCAAGATTTTCCACCGGTTCAAA 59.045 39.130 2.97 3.59 0.00 2.69
2270 2404 4.037446 TCAAGATTTTCCACCGGTTCAAAG 59.963 41.667 2.97 0.00 0.00 2.77
2272 2406 3.958147 AGATTTTCCACCGGTTCAAAGTT 59.042 39.130 2.97 0.00 0.00 2.66
2274 2408 1.394618 TTCCACCGGTTCAAAGTTGG 58.605 50.000 2.97 0.00 0.00 3.77
2275 2409 0.547075 TCCACCGGTTCAAAGTTGGA 59.453 50.000 2.97 2.49 0.00 3.53
2277 2411 1.960689 CCACCGGTTCAAAGTTGGATT 59.039 47.619 2.97 0.00 0.00 3.01
2279 2413 3.570550 CCACCGGTTCAAAGTTGGATTAA 59.429 43.478 2.97 0.00 0.00 1.40
2280 2414 4.542735 CACCGGTTCAAAGTTGGATTAAC 58.457 43.478 2.97 0.00 39.65 2.01
2281 2415 3.251487 ACCGGTTCAAAGTTGGATTAACG 59.749 43.478 0.00 0.00 44.15 3.18
2282 2416 3.251487 CCGGTTCAAAGTTGGATTAACGT 59.749 43.478 0.00 0.00 44.15 3.99
2283 2417 4.261280 CCGGTTCAAAGTTGGATTAACGTT 60.261 41.667 5.88 5.88 44.15 3.99
2284 2418 4.907582 CGGTTCAAAGTTGGATTAACGTTC 59.092 41.667 2.82 0.00 44.15 3.95
2289 2426 7.979115 TCAAAGTTGGATTAACGTTCTTTTG 57.021 32.000 2.82 5.86 44.15 2.44
2315 2452 0.388134 ATGGCACGACGTACAGTGTC 60.388 55.000 13.71 13.71 42.73 3.67
2316 2453 1.285023 GGCACGACGTACAGTGTCT 59.715 57.895 16.25 0.00 39.63 3.41
2317 2454 0.518636 GGCACGACGTACAGTGTCTA 59.481 55.000 16.25 0.00 39.63 2.59
2329 2466 6.592607 ACGTACAGTGTCTATTTTGGTATTGG 59.407 38.462 0.00 0.00 0.00 3.16
2339 2476 9.203421 GTCTATTTTGGTATTGGTTTCTTTTGG 57.797 33.333 0.00 0.00 0.00 3.28
2342 2479 3.309296 TGGTATTGGTTTCTTTTGGCCA 58.691 40.909 0.00 0.00 0.00 5.36
2354 2491 3.076785 TCTTTTGGCCATTCTTCCCCTTA 59.923 43.478 6.09 0.00 0.00 2.69
2355 2492 3.774842 TTTGGCCATTCTTCCCCTTAT 57.225 42.857 6.09 0.00 0.00 1.73
2359 2496 2.175715 GGCCATTCTTCCCCTTATCTGT 59.824 50.000 0.00 0.00 0.00 3.41
2363 2500 3.350219 TTCTTCCCCTTATCTGTGCAC 57.650 47.619 10.75 10.75 0.00 4.57
2366 2503 3.073798 TCTTCCCCTTATCTGTGCACAAA 59.926 43.478 21.98 8.53 0.00 2.83
2368 2505 3.420893 TCCCCTTATCTGTGCACAAAAG 58.579 45.455 21.98 21.41 0.00 2.27
2369 2506 2.493278 CCCCTTATCTGTGCACAAAAGG 59.507 50.000 30.56 30.56 33.53 3.11
2370 2507 3.420893 CCCTTATCTGTGCACAAAAGGA 58.579 45.455 34.93 24.86 34.66 3.36
2371 2508 3.826157 CCCTTATCTGTGCACAAAAGGAA 59.174 43.478 34.93 20.32 34.66 3.36
2372 2509 4.280677 CCCTTATCTGTGCACAAAAGGAAA 59.719 41.667 34.93 19.38 34.66 3.13
2379 2516 2.802247 GTGCACAAAAGGAAATTGAGGC 59.198 45.455 13.17 0.00 34.56 4.70
2390 2527 4.414846 AGGAAATTGAGGCACCAGATCTAT 59.585 41.667 0.00 0.00 0.00 1.98
2402 2539 4.020396 CACCAGATCTATGAGGATTGAGGG 60.020 50.000 3.90 0.00 0.00 4.30
2407 2544 2.641321 TCTATGAGGATTGAGGGCCATG 59.359 50.000 6.18 0.00 0.00 3.66
2408 2545 1.526315 ATGAGGATTGAGGGCCATGA 58.474 50.000 6.18 0.00 0.00 3.07
2409 2546 0.841961 TGAGGATTGAGGGCCATGAG 59.158 55.000 6.18 0.00 0.00 2.90
2410 2547 1.135094 GAGGATTGAGGGCCATGAGA 58.865 55.000 6.18 0.00 0.00 3.27
2411 2548 0.842635 AGGATTGAGGGCCATGAGAC 59.157 55.000 6.18 0.00 0.00 3.36
2412 2549 0.179006 GGATTGAGGGCCATGAGACC 60.179 60.000 6.18 0.00 0.00 3.85
2413 2550 0.548031 GATTGAGGGCCATGAGACCA 59.452 55.000 6.18 0.00 0.00 4.02
2414 2551 1.144503 GATTGAGGGCCATGAGACCAT 59.855 52.381 6.18 0.00 0.00 3.55
2415 2552 0.548031 TTGAGGGCCATGAGACCATC 59.452 55.000 6.18 7.73 37.27 3.51
2416 2553 0.326904 TGAGGGCCATGAGACCATCT 60.327 55.000 6.18 0.00 37.63 2.90
2417 2554 0.842635 GAGGGCCATGAGACCATCTT 59.157 55.000 6.18 0.00 33.97 2.40
2418 2555 1.213926 GAGGGCCATGAGACCATCTTT 59.786 52.381 6.18 0.00 33.97 2.52
2419 2556 1.642762 AGGGCCATGAGACCATCTTTT 59.357 47.619 6.18 0.00 0.00 2.27
2420 2557 2.043526 AGGGCCATGAGACCATCTTTTT 59.956 45.455 6.18 0.00 0.00 1.94
2445 2582 9.640952 TTTTTAGGGGATGAGACCATTTATTAG 57.359 33.333 0.00 0.00 32.09 1.73
2446 2583 7.947782 TTAGGGGATGAGACCATTTATTAGT 57.052 36.000 0.00 0.00 32.09 2.24
2447 2584 6.848562 AGGGGATGAGACCATTTATTAGTT 57.151 37.500 0.00 0.00 32.09 2.24
2448 2585 7.947782 AGGGGATGAGACCATTTATTAGTTA 57.052 36.000 0.00 0.00 32.09 2.24
2449 2586 7.978925 AGGGGATGAGACCATTTATTAGTTAG 58.021 38.462 0.00 0.00 32.09 2.34
2450 2587 7.572861 AGGGGATGAGACCATTTATTAGTTAGT 59.427 37.037 0.00 0.00 32.09 2.24
2451 2588 7.661847 GGGGATGAGACCATTTATTAGTTAGTG 59.338 40.741 0.00 0.00 32.09 2.74
2452 2589 7.173390 GGGATGAGACCATTTATTAGTTAGTGC 59.827 40.741 0.00 0.00 32.09 4.40
2453 2590 7.934120 GGATGAGACCATTTATTAGTTAGTGCT 59.066 37.037 0.00 0.00 32.09 4.40
2454 2591 9.331282 GATGAGACCATTTATTAGTTAGTGCTT 57.669 33.333 0.00 0.00 32.09 3.91
2455 2592 8.492673 TGAGACCATTTATTAGTTAGTGCTTG 57.507 34.615 0.00 0.00 0.00 4.01
2456 2593 8.318412 TGAGACCATTTATTAGTTAGTGCTTGA 58.682 33.333 0.00 0.00 0.00 3.02
2457 2594 8.494016 AGACCATTTATTAGTTAGTGCTTGAC 57.506 34.615 0.00 0.00 0.00 3.18
2458 2595 8.322091 AGACCATTTATTAGTTAGTGCTTGACT 58.678 33.333 0.00 0.00 38.88 3.41
2459 2596 8.268850 ACCATTTATTAGTTAGTGCTTGACTG 57.731 34.615 0.00 0.00 35.96 3.51
2460 2597 7.883311 ACCATTTATTAGTTAGTGCTTGACTGT 59.117 33.333 0.00 0.00 35.96 3.55
2461 2598 8.730680 CCATTTATTAGTTAGTGCTTGACTGTT 58.269 33.333 0.00 0.00 35.96 3.16
2462 2599 9.760660 CATTTATTAGTTAGTGCTTGACTGTTC 57.239 33.333 0.00 0.00 35.96 3.18
2463 2600 7.576750 TTATTAGTTAGTGCTTGACTGTTCG 57.423 36.000 0.00 0.00 35.96 3.95
2464 2601 3.454371 AGTTAGTGCTTGACTGTTCGT 57.546 42.857 0.00 0.00 35.96 3.85
2465 2602 4.579454 AGTTAGTGCTTGACTGTTCGTA 57.421 40.909 0.00 0.00 35.96 3.43
2466 2603 4.296690 AGTTAGTGCTTGACTGTTCGTAC 58.703 43.478 0.00 0.00 35.96 3.67
2467 2604 4.037684 AGTTAGTGCTTGACTGTTCGTACT 59.962 41.667 0.00 0.00 35.96 2.73
2468 2605 3.454371 AGTGCTTGACTGTTCGTACTT 57.546 42.857 0.00 0.00 31.75 2.24
2469 2606 3.381949 AGTGCTTGACTGTTCGTACTTC 58.618 45.455 0.00 0.00 31.75 3.01
2470 2607 2.475487 GTGCTTGACTGTTCGTACTTCC 59.525 50.000 0.00 0.00 0.00 3.46
2471 2608 2.364324 TGCTTGACTGTTCGTACTTCCT 59.636 45.455 0.00 0.00 0.00 3.36
2472 2609 3.181469 TGCTTGACTGTTCGTACTTCCTT 60.181 43.478 0.00 0.00 0.00 3.36
2473 2610 3.184581 GCTTGACTGTTCGTACTTCCTTG 59.815 47.826 0.00 0.00 0.00 3.61
2474 2611 4.617959 CTTGACTGTTCGTACTTCCTTGA 58.382 43.478 0.00 0.00 0.00 3.02
2475 2612 4.659111 TGACTGTTCGTACTTCCTTGAA 57.341 40.909 0.00 0.00 0.00 2.69
2476 2613 4.617959 TGACTGTTCGTACTTCCTTGAAG 58.382 43.478 2.40 2.40 44.37 3.02
2477 2614 3.391049 ACTGTTCGTACTTCCTTGAAGC 58.609 45.455 3.82 0.00 42.79 3.86
2478 2615 2.737252 CTGTTCGTACTTCCTTGAAGCC 59.263 50.000 3.82 0.00 42.79 4.35
2479 2616 2.074576 GTTCGTACTTCCTTGAAGCCC 58.925 52.381 3.82 0.00 42.79 5.19
2480 2617 1.344065 TCGTACTTCCTTGAAGCCCA 58.656 50.000 3.82 0.00 42.79 5.36
2481 2618 1.001633 TCGTACTTCCTTGAAGCCCAC 59.998 52.381 3.82 0.15 42.79 4.61
2482 2619 1.002087 CGTACTTCCTTGAAGCCCACT 59.998 52.381 3.82 0.00 42.79 4.00
2483 2620 2.427506 GTACTTCCTTGAAGCCCACTG 58.572 52.381 3.82 0.00 42.79 3.66
2484 2621 0.111253 ACTTCCTTGAAGCCCACTGG 59.889 55.000 3.82 0.00 42.79 4.00
2494 2631 2.352805 CCCACTGGGCTTGGAGTC 59.647 66.667 0.00 0.00 35.35 3.36
2495 2632 2.352805 CCACTGGGCTTGGAGTCC 59.647 66.667 0.73 0.73 41.40 3.85
2499 2636 3.089838 TGGGCTTGGAGTCCATGG 58.910 61.111 22.80 4.97 46.76 3.66
2500 2637 2.276740 GGGCTTGGAGTCCATGGG 59.723 66.667 22.80 13.24 40.51 4.00
2501 2638 2.440980 GGCTTGGAGTCCATGGGC 60.441 66.667 22.80 20.54 31.53 5.36
2502 2639 2.679716 GCTTGGAGTCCATGGGCT 59.320 61.111 21.57 21.57 31.53 5.19
2503 2640 1.635817 GGCTTGGAGTCCATGGGCTA 61.636 60.000 21.43 0.50 31.53 3.93
2504 2641 0.475906 GCTTGGAGTCCATGGGCTAT 59.524 55.000 21.43 0.00 31.53 2.97
2505 2642 1.816961 GCTTGGAGTCCATGGGCTATG 60.817 57.143 21.43 8.26 36.50 2.23
2506 2643 1.770658 CTTGGAGTCCATGGGCTATGA 59.229 52.381 21.43 6.85 39.21 2.15
2507 2644 1.131638 TGGAGTCCATGGGCTATGAC 58.868 55.000 21.43 10.73 39.21 3.06
2508 2645 0.398318 GGAGTCCATGGGCTATGACC 59.602 60.000 21.43 12.83 39.21 4.02
2515 2652 2.822399 GGGCTATGACCCCGAGTG 59.178 66.667 0.00 0.00 45.00 3.51
2516 2653 2.808206 GGGCTATGACCCCGAGTGG 61.808 68.421 0.00 0.00 45.00 4.00
2517 2654 1.760875 GGCTATGACCCCGAGTGGA 60.761 63.158 0.00 0.00 37.49 4.02
2518 2655 1.442148 GCTATGACCCCGAGTGGAC 59.558 63.158 0.00 0.00 37.49 4.02
2519 2656 1.327690 GCTATGACCCCGAGTGGACA 61.328 60.000 0.00 0.00 37.49 4.02
2520 2657 0.747255 CTATGACCCCGAGTGGACAG 59.253 60.000 0.00 0.00 37.49 3.51
2521 2658 0.686441 TATGACCCCGAGTGGACAGG 60.686 60.000 0.00 0.00 37.49 4.00
2522 2659 3.391382 GACCCCGAGTGGACAGGG 61.391 72.222 0.00 0.00 45.75 4.45
2538 2675 3.821886 GGGGGCTGGTGTCTACTT 58.178 61.111 0.00 0.00 0.00 2.24
2539 2676 1.602771 GGGGGCTGGTGTCTACTTC 59.397 63.158 0.00 0.00 0.00 3.01
2540 2677 0.910088 GGGGGCTGGTGTCTACTTCT 60.910 60.000 0.00 0.00 0.00 2.85
2541 2678 0.984995 GGGGCTGGTGTCTACTTCTT 59.015 55.000 0.00 0.00 0.00 2.52
2542 2679 1.066071 GGGGCTGGTGTCTACTTCTTC 60.066 57.143 0.00 0.00 0.00 2.87
2543 2680 1.903183 GGGCTGGTGTCTACTTCTTCT 59.097 52.381 0.00 0.00 0.00 2.85
2544 2681 2.093921 GGGCTGGTGTCTACTTCTTCTC 60.094 54.545 0.00 0.00 0.00 2.87
2545 2682 2.093921 GGCTGGTGTCTACTTCTTCTCC 60.094 54.545 0.00 0.00 0.00 3.71
2546 2683 2.093921 GCTGGTGTCTACTTCTTCTCCC 60.094 54.545 0.00 0.00 0.00 4.30
2547 2684 3.436243 CTGGTGTCTACTTCTTCTCCCT 58.564 50.000 0.00 0.00 0.00 4.20
2548 2685 3.835395 CTGGTGTCTACTTCTTCTCCCTT 59.165 47.826 0.00 0.00 0.00 3.95
2549 2686 4.232091 TGGTGTCTACTTCTTCTCCCTTT 58.768 43.478 0.00 0.00 0.00 3.11
2550 2687 4.283722 TGGTGTCTACTTCTTCTCCCTTTC 59.716 45.833 0.00 0.00 0.00 2.62
2551 2688 4.528987 GGTGTCTACTTCTTCTCCCTTTCT 59.471 45.833 0.00 0.00 0.00 2.52
2552 2689 5.012251 GGTGTCTACTTCTTCTCCCTTTCTT 59.988 44.000 0.00 0.00 0.00 2.52
2553 2690 6.160684 GTGTCTACTTCTTCTCCCTTTCTTC 58.839 44.000 0.00 0.00 0.00 2.87
2554 2691 6.014925 GTGTCTACTTCTTCTCCCTTTCTTCT 60.015 42.308 0.00 0.00 0.00 2.85
2555 2692 6.555360 TGTCTACTTCTTCTCCCTTTCTTCTT 59.445 38.462 0.00 0.00 0.00 2.52
2556 2693 7.094631 GTCTACTTCTTCTCCCTTTCTTCTTC 58.905 42.308 0.00 0.00 0.00 2.87
2557 2694 7.013834 TCTACTTCTTCTCCCTTTCTTCTTCT 58.986 38.462 0.00 0.00 0.00 2.85
2558 2695 6.508030 ACTTCTTCTCCCTTTCTTCTTCTT 57.492 37.500 0.00 0.00 0.00 2.52
2559 2696 6.905736 ACTTCTTCTCCCTTTCTTCTTCTTT 58.094 36.000 0.00 0.00 0.00 2.52
2560 2697 7.350382 ACTTCTTCTCCCTTTCTTCTTCTTTT 58.650 34.615 0.00 0.00 0.00 2.27
2561 2698 7.284261 ACTTCTTCTCCCTTTCTTCTTCTTTTG 59.716 37.037 0.00 0.00 0.00 2.44
2562 2699 6.900194 TCTTCTCCCTTTCTTCTTCTTTTGA 58.100 36.000 0.00 0.00 0.00 2.69
2563 2700 7.521669 TCTTCTCCCTTTCTTCTTCTTTTGAT 58.478 34.615 0.00 0.00 0.00 2.57
2564 2701 7.446625 TCTTCTCCCTTTCTTCTTCTTTTGATG 59.553 37.037 0.00 0.00 0.00 3.07
2565 2702 6.006449 TCTCCCTTTCTTCTTCTTTTGATGG 58.994 40.000 0.00 0.00 0.00 3.51
2566 2703 5.079643 TCCCTTTCTTCTTCTTTTGATGGG 58.920 41.667 0.00 0.00 0.00 4.00
2567 2704 4.835056 CCCTTTCTTCTTCTTTTGATGGGT 59.165 41.667 0.00 0.00 0.00 4.51
2568 2705 5.305386 CCCTTTCTTCTTCTTTTGATGGGTT 59.695 40.000 0.00 0.00 0.00 4.11
2569 2706 6.183361 CCCTTTCTTCTTCTTTTGATGGGTTT 60.183 38.462 0.00 0.00 0.00 3.27
2570 2707 7.275183 CCTTTCTTCTTCTTTTGATGGGTTTT 58.725 34.615 0.00 0.00 0.00 2.43
2571 2708 7.439356 CCTTTCTTCTTCTTTTGATGGGTTTTC 59.561 37.037 0.00 0.00 0.00 2.29
2572 2709 6.405278 TCTTCTTCTTTTGATGGGTTTTCC 57.595 37.500 0.00 0.00 39.75 3.13
2586 2723 4.345859 GGTTTTCCCCGAAAATCCTTTT 57.654 40.909 3.11 0.00 42.31 2.27
2587 2724 4.710324 GGTTTTCCCCGAAAATCCTTTTT 58.290 39.130 3.11 0.00 42.31 1.94
2588 2725 4.753107 GGTTTTCCCCGAAAATCCTTTTTC 59.247 41.667 3.11 1.94 42.31 2.29
2589 2726 5.454187 GGTTTTCCCCGAAAATCCTTTTTCT 60.454 40.000 3.11 0.00 45.60 2.52
2590 2727 6.239373 GGTTTTCCCCGAAAATCCTTTTTCTA 60.239 38.462 3.11 0.00 45.60 2.10
2591 2728 6.980416 TTTCCCCGAAAATCCTTTTTCTAA 57.020 33.333 8.92 0.00 45.60 2.10
2592 2729 6.584185 TTCCCCGAAAATCCTTTTTCTAAG 57.416 37.500 8.92 0.00 45.60 2.18
2593 2730 4.461431 TCCCCGAAAATCCTTTTTCTAAGC 59.539 41.667 8.92 0.00 45.60 3.09
2594 2731 4.462834 CCCCGAAAATCCTTTTTCTAAGCT 59.537 41.667 8.92 0.00 45.60 3.74
2595 2732 5.393135 CCCCGAAAATCCTTTTTCTAAGCTC 60.393 44.000 8.92 0.00 45.60 4.09
2596 2733 5.324697 CCGAAAATCCTTTTTCTAAGCTCG 58.675 41.667 8.92 0.00 45.60 5.03
2597 2734 5.324697 CGAAAATCCTTTTTCTAAGCTCGG 58.675 41.667 8.92 0.00 45.60 4.63
2598 2735 5.641709 GAAAATCCTTTTTCTAAGCTCGGG 58.358 41.667 4.39 0.00 44.78 5.14
2599 2736 2.109425 TCCTTTTTCTAAGCTCGGGC 57.891 50.000 0.00 0.00 39.06 6.13
2600 2737 1.349688 TCCTTTTTCTAAGCTCGGGCA 59.650 47.619 11.40 0.00 41.70 5.36
2601 2738 2.159382 CCTTTTTCTAAGCTCGGGCAA 58.841 47.619 11.40 0.00 41.70 4.52
2602 2739 2.755103 CCTTTTTCTAAGCTCGGGCAAT 59.245 45.455 11.40 0.00 41.70 3.56
2603 2740 3.945285 CCTTTTTCTAAGCTCGGGCAATA 59.055 43.478 11.40 0.44 41.70 1.90
2604 2741 4.398044 CCTTTTTCTAAGCTCGGGCAATAA 59.602 41.667 11.40 0.00 41.70 1.40
2605 2742 5.105917 CCTTTTTCTAAGCTCGGGCAATAAA 60.106 40.000 11.40 1.03 41.70 1.40
2606 2743 5.968528 TTTTCTAAGCTCGGGCAATAAAA 57.031 34.783 11.40 7.88 41.70 1.52
2607 2744 5.968528 TTTCTAAGCTCGGGCAATAAAAA 57.031 34.783 11.40 0.00 41.70 1.94
2670 2807 4.839668 TTTTCCGTGGTAGACAATTTGG 57.160 40.909 0.78 0.00 0.00 3.28
2671 2808 1.816074 TCCGTGGTAGACAATTTGGC 58.184 50.000 0.78 0.00 0.00 4.52
2672 2809 0.446222 CCGTGGTAGACAATTTGGCG 59.554 55.000 0.78 0.00 0.00 5.69
2673 2810 0.179200 CGTGGTAGACAATTTGGCGC 60.179 55.000 0.00 0.00 0.00 6.53
2674 2811 0.179200 GTGGTAGACAATTTGGCGCG 60.179 55.000 0.00 0.00 0.00 6.86
2675 2812 0.604243 TGGTAGACAATTTGGCGCGT 60.604 50.000 8.43 0.00 0.00 6.01
2676 2813 0.179200 GGTAGACAATTTGGCGCGTG 60.179 55.000 8.43 0.00 0.00 5.34
2677 2814 0.793861 GTAGACAATTTGGCGCGTGA 59.206 50.000 8.43 0.00 0.00 4.35
2678 2815 1.396996 GTAGACAATTTGGCGCGTGAT 59.603 47.619 8.43 0.00 0.00 3.06
2679 2816 0.168788 AGACAATTTGGCGCGTGATG 59.831 50.000 8.43 0.00 0.00 3.07
2680 2817 0.109781 GACAATTTGGCGCGTGATGT 60.110 50.000 8.43 2.41 0.00 3.06
2681 2818 0.109781 ACAATTTGGCGCGTGATGTC 60.110 50.000 8.43 0.00 0.00 3.06
2682 2819 0.798009 CAATTTGGCGCGTGATGTCC 60.798 55.000 8.43 0.00 0.00 4.02
2683 2820 2.252127 AATTTGGCGCGTGATGTCCG 62.252 55.000 8.43 0.00 0.00 4.79
2684 2821 3.867700 TTTGGCGCGTGATGTCCGA 62.868 57.895 8.43 0.00 0.00 4.55
2688 2825 4.429212 CGCGTGATGTCCGACCCA 62.429 66.667 0.00 0.00 0.00 4.51
2689 2826 2.047655 GCGTGATGTCCGACCCAA 60.048 61.111 0.00 0.00 0.00 4.12
2690 2827 1.449601 GCGTGATGTCCGACCCAAT 60.450 57.895 0.00 0.00 0.00 3.16
2691 2828 1.024579 GCGTGATGTCCGACCCAATT 61.025 55.000 0.00 0.00 0.00 2.32
2692 2829 1.448985 CGTGATGTCCGACCCAATTT 58.551 50.000 0.00 0.00 0.00 1.82
2693 2830 1.810151 CGTGATGTCCGACCCAATTTT 59.190 47.619 0.00 0.00 0.00 1.82
2694 2831 2.159572 CGTGATGTCCGACCCAATTTTC 60.160 50.000 0.00 0.00 0.00 2.29
2695 2832 2.817258 GTGATGTCCGACCCAATTTTCA 59.183 45.455 0.00 0.00 0.00 2.69
2696 2833 3.443681 GTGATGTCCGACCCAATTTTCAT 59.556 43.478 0.00 0.00 0.00 2.57
2697 2834 4.638421 GTGATGTCCGACCCAATTTTCATA 59.362 41.667 0.00 0.00 0.00 2.15
2698 2835 5.299279 GTGATGTCCGACCCAATTTTCATAT 59.701 40.000 0.00 0.00 0.00 1.78
2699 2836 5.299028 TGATGTCCGACCCAATTTTCATATG 59.701 40.000 0.00 0.00 0.00 1.78
2700 2837 4.849518 TGTCCGACCCAATTTTCATATGA 58.150 39.130 0.00 0.00 0.00 2.15
2701 2838 5.445069 TGTCCGACCCAATTTTCATATGAT 58.555 37.500 6.17 0.00 0.00 2.45
2702 2839 5.890985 TGTCCGACCCAATTTTCATATGATT 59.109 36.000 6.17 0.00 0.00 2.57
2703 2840 6.379703 TGTCCGACCCAATTTTCATATGATTT 59.620 34.615 6.17 0.00 0.00 2.17
2704 2841 6.697019 GTCCGACCCAATTTTCATATGATTTG 59.303 38.462 6.17 10.60 0.00 2.32
2705 2842 5.984926 CCGACCCAATTTTCATATGATTTGG 59.015 40.000 23.24 23.24 32.91 3.28
2706 2843 6.183360 CCGACCCAATTTTCATATGATTTGGA 60.183 38.462 27.74 6.96 33.99 3.53
2707 2844 6.697019 CGACCCAATTTTCATATGATTTGGAC 59.303 38.462 27.74 22.06 33.99 4.02
2708 2845 7.493499 ACCCAATTTTCATATGATTTGGACA 57.507 32.000 27.74 5.77 33.99 4.02
2709 2846 7.915930 ACCCAATTTTCATATGATTTGGACAA 58.084 30.769 27.74 10.47 33.99 3.18
2710 2847 7.823799 ACCCAATTTTCATATGATTTGGACAAC 59.176 33.333 27.74 0.00 33.99 3.32
2711 2848 8.042515 CCCAATTTTCATATGATTTGGACAACT 58.957 33.333 27.74 6.26 33.99 3.16
2712 2849 8.875803 CCAATTTTCATATGATTTGGACAACTG 58.124 33.333 24.66 9.43 33.99 3.16
2713 2850 9.642327 CAATTTTCATATGATTTGGACAACTGA 57.358 29.630 6.17 0.00 0.00 3.41
2714 2851 9.865321 AATTTTCATATGATTTGGACAACTGAG 57.135 29.630 6.17 0.00 0.00 3.35
2715 2852 7.395190 TTTCATATGATTTGGACAACTGAGG 57.605 36.000 6.17 0.00 0.00 3.86
2716 2853 4.883585 TCATATGATTTGGACAACTGAGGC 59.116 41.667 0.00 0.00 0.00 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 0.394899 GGCCTTGGAGACCAATCCTG 60.395 60.000 0.00 0.00 43.07 3.86
24 25 1.719063 AAACTGCTGGAGGCCTTGGA 61.719 55.000 6.77 0.48 40.92 3.53
32 33 2.866028 GCTGCGAAACTGCTGGAG 59.134 61.111 0.00 0.00 39.94 3.86
36 37 2.588877 ACACGCTGCGAAACTGCT 60.589 55.556 30.47 0.16 40.84 4.24
40 41 1.201825 GAGTCACACGCTGCGAAAC 59.798 57.895 30.47 18.64 0.00 2.78
74 75 2.243957 TGCAACGGTCTGCGTCAAG 61.244 57.895 9.56 0.00 45.74 3.02
159 170 1.715585 GATGTTGATCGGCACACGG 59.284 57.895 0.00 0.00 44.45 4.94
198 209 0.384353 GAACTTTCGTTGCAGCGTCC 60.384 55.000 22.48 3.52 32.39 4.79
200 211 0.027586 GTGAACTTTCGTTGCAGCGT 59.972 50.000 22.48 2.44 32.39 5.07
201 212 0.657368 GGTGAACTTTCGTTGCAGCG 60.657 55.000 17.58 17.58 32.39 5.18
260 271 4.141233 AGTGCATGGCAAGTTTCTTTTT 57.859 36.364 0.00 0.00 41.47 1.94
261 272 3.825143 AGTGCATGGCAAGTTTCTTTT 57.175 38.095 0.00 0.00 41.47 2.27
262 273 3.118665 ACAAGTGCATGGCAAGTTTCTTT 60.119 39.130 0.00 0.00 41.47 2.52
263 274 2.431782 ACAAGTGCATGGCAAGTTTCTT 59.568 40.909 0.00 0.00 41.47 2.52
264 275 2.034124 ACAAGTGCATGGCAAGTTTCT 58.966 42.857 0.00 0.00 41.47 2.52
265 276 2.129607 CACAAGTGCATGGCAAGTTTC 58.870 47.619 0.00 0.00 41.47 2.78
266 277 2.228138 CACAAGTGCATGGCAAGTTT 57.772 45.000 0.00 0.00 41.47 2.66
267 278 3.972107 CACAAGTGCATGGCAAGTT 57.028 47.368 0.00 0.00 41.47 2.66
285 298 2.426024 AGAACTGCACATGGATCAATGC 59.574 45.455 10.19 6.40 38.59 3.56
342 356 9.109393 CTGGCTGCTCTTTTTGTATAGTAATTA 57.891 33.333 0.00 0.00 0.00 1.40
343 357 7.829211 TCTGGCTGCTCTTTTTGTATAGTAATT 59.171 33.333 0.00 0.00 0.00 1.40
344 358 7.338710 TCTGGCTGCTCTTTTTGTATAGTAAT 58.661 34.615 0.00 0.00 0.00 1.89
345 359 6.707290 TCTGGCTGCTCTTTTTGTATAGTAA 58.293 36.000 0.00 0.00 0.00 2.24
346 360 6.294361 TCTGGCTGCTCTTTTTGTATAGTA 57.706 37.500 0.00 0.00 0.00 1.82
347 361 5.165961 TCTGGCTGCTCTTTTTGTATAGT 57.834 39.130 0.00 0.00 0.00 2.12
351 389 3.754965 ACATCTGGCTGCTCTTTTTGTA 58.245 40.909 0.00 0.00 0.00 2.41
362 400 2.033299 ACAAACACGAAACATCTGGCTG 59.967 45.455 0.00 0.00 0.00 4.85
364 402 2.384382 CACAAACACGAAACATCTGGC 58.616 47.619 0.00 0.00 0.00 4.85
388 426 8.393366 CCTGTAGATTGTAACAATGATTGTGAG 58.607 37.037 12.09 0.00 44.59 3.51
392 430 8.896744 ACATCCTGTAGATTGTAACAATGATTG 58.103 33.333 3.16 3.16 30.59 2.67
395 433 9.952030 TTTACATCCTGTAGATTGTAACAATGA 57.048 29.630 0.00 0.00 33.92 2.57
403 441 9.277783 GAGCATTATTTACATCCTGTAGATTGT 57.722 33.333 0.00 0.00 33.92 2.71
413 454 6.199531 TCGTACGTTGAGCATTATTTACATCC 59.800 38.462 16.05 0.00 0.00 3.51
416 457 6.563398 CTCGTACGTTGAGCATTATTTACA 57.437 37.500 16.05 0.00 0.00 2.41
427 468 2.643044 GAGCAGCTCGTACGTTGAG 58.357 57.895 16.05 11.87 36.53 3.02
428 469 4.861883 GAGCAGCTCGTACGTTGA 57.138 55.556 16.05 0.00 0.00 3.18
471 529 4.373116 TCCTCTGCGTGGTTCGGC 62.373 66.667 0.00 0.00 40.26 5.54
495 553 6.910191 TCCTGTTCATCTCTCTCTAATCTCT 58.090 40.000 0.00 0.00 0.00 3.10
496 554 6.998074 TCTCCTGTTCATCTCTCTCTAATCTC 59.002 42.308 0.00 0.00 0.00 2.75
497 555 6.910191 TCTCCTGTTCATCTCTCTCTAATCT 58.090 40.000 0.00 0.00 0.00 2.40
498 556 6.207417 CCTCTCCTGTTCATCTCTCTCTAATC 59.793 46.154 0.00 0.00 0.00 1.75
499 557 6.070656 CCTCTCCTGTTCATCTCTCTCTAAT 58.929 44.000 0.00 0.00 0.00 1.73
500 558 5.445069 CCTCTCCTGTTCATCTCTCTCTAA 58.555 45.833 0.00 0.00 0.00 2.10
501 559 4.141274 CCCTCTCCTGTTCATCTCTCTCTA 60.141 50.000 0.00 0.00 0.00 2.43
542 600 2.955660 CCTGACCTATCTGTCTGACTCC 59.044 54.545 9.51 0.00 36.60 3.85
544 602 2.952702 GCCCTGACCTATCTGTCTGACT 60.953 54.545 9.51 0.00 36.60 3.41
551 609 0.106335 CTGCAGCCCTGACCTATCTG 59.894 60.000 0.00 0.00 0.00 2.90
621 688 1.145819 GGAGCTCAGCATCCCAGAC 59.854 63.158 17.19 0.00 0.00 3.51
779 851 2.688794 GCAGAGCAAGCTGACAGGC 61.689 63.158 4.26 0.00 38.14 4.85
781 853 3.576004 GGCAGAGCAAGCTGACAG 58.424 61.111 0.00 0.00 43.57 3.51
783 855 1.578423 GTTGGCAGAGCAAGCTGAC 59.422 57.895 0.00 3.13 44.38 3.51
786 858 2.282745 GGGTTGGCAGAGCAAGCT 60.283 61.111 0.00 0.00 0.00 3.74
789 861 2.203480 GGTGGGTTGGCAGAGCAA 60.203 61.111 0.00 0.00 0.00 3.91
793 866 0.842030 ATCTCTGGTGGGTTGGCAGA 60.842 55.000 0.00 0.00 0.00 4.26
794 867 0.679002 CATCTCTGGTGGGTTGGCAG 60.679 60.000 0.00 0.00 0.00 4.85
795 868 1.379916 CATCTCTGGTGGGTTGGCA 59.620 57.895 0.00 0.00 0.00 4.92
796 869 2.048603 GCATCTCTGGTGGGTTGGC 61.049 63.158 0.00 0.00 0.00 4.52
811 884 2.437359 GACGGGAAGCAGCAGCAT 60.437 61.111 3.17 0.00 45.49 3.79
921 1012 4.872691 CGGTAACTGAGATTGCAAGAAGAT 59.127 41.667 4.94 0.00 0.00 2.40
933 1024 1.272490 CTCACTTGCCGGTAACTGAGA 59.728 52.381 26.58 12.01 0.00 3.27
935 1026 1.272490 CTCTCACTTGCCGGTAACTGA 59.728 52.381 12.59 12.59 0.00 3.41
936 1027 1.714794 CTCTCACTTGCCGGTAACTG 58.285 55.000 0.00 3.03 0.00 3.16
937 1028 0.037232 GCTCTCACTTGCCGGTAACT 60.037 55.000 0.00 0.00 0.00 2.24
938 1029 0.037232 AGCTCTCACTTGCCGGTAAC 60.037 55.000 0.00 0.00 0.00 2.50
944 1035 0.869454 CGATCGAGCTCTCACTTGCC 60.869 60.000 10.26 0.00 0.00 4.52
963 1054 1.447314 CAACCTAAGCCGGACGACC 60.447 63.158 5.05 0.00 0.00 4.79
964 1055 0.320160 AACAACCTAAGCCGGACGAC 60.320 55.000 5.05 0.00 0.00 4.34
971 1062 3.487372 AGAAACCTGAACAACCTAAGCC 58.513 45.455 0.00 0.00 0.00 4.35
1008 1099 0.107831 GCTGGTCCATGGCCGTAATA 59.892 55.000 6.96 0.00 0.00 0.98
1014 1105 3.711059 CTCCAGCTGGTCCATGGCC 62.711 68.421 31.58 12.55 36.34 5.36
1717 1823 0.119155 TGGGGAGGTTGATGGAGACT 59.881 55.000 0.00 0.00 0.00 3.24
1718 1824 0.253327 GTGGGGAGGTTGATGGAGAC 59.747 60.000 0.00 0.00 0.00 3.36
1774 1880 0.601311 ATCGATTAGAGCTTGGCCGC 60.601 55.000 0.00 0.00 0.00 6.53
1827 1954 6.058183 GGATGGATGCAGAAGTAACACTAAT 58.942 40.000 0.00 0.00 0.00 1.73
1839 1966 1.353358 GGATGGATGGATGGATGCAGA 59.647 52.381 0.00 0.00 0.00 4.26
1893 2024 3.387374 AGCTCTGACGGATTGATCAAGAT 59.613 43.478 14.54 0.00 0.00 2.40
1906 2037 0.660488 ACTCATCGCTAGCTCTGACG 59.340 55.000 13.93 10.87 0.00 4.35
1922 2053 8.981647 TGAACGAACCTAACTAACAAAATACTC 58.018 33.333 0.00 0.00 0.00 2.59
1961 2093 3.058570 CCTCAGATCGACTCTCATAACCG 60.059 52.174 0.00 0.00 29.16 4.44
1975 2107 2.768527 TCTTCACCACCATCCTCAGATC 59.231 50.000 0.00 0.00 0.00 2.75
2026 2158 4.152625 GCATGCAGTCGCGGACAC 62.153 66.667 14.21 0.00 42.97 3.67
2027 2159 3.956305 ATGCATGCAGTCGCGGACA 62.956 57.895 26.69 0.00 42.97 4.02
2028 2160 3.197790 ATGCATGCAGTCGCGGAC 61.198 61.111 26.69 3.09 42.97 4.79
2089 2221 1.846782 CGTCGATCGTTCCATCAGTTC 59.153 52.381 15.94 0.00 34.52 3.01
2090 2222 1.471287 TCGTCGATCGTTCCATCAGTT 59.529 47.619 15.94 0.00 40.80 3.16
2091 2223 1.092348 TCGTCGATCGTTCCATCAGT 58.908 50.000 15.94 0.00 40.80 3.41
2092 2224 2.047040 CATCGTCGATCGTTCCATCAG 58.953 52.381 15.94 0.00 40.80 2.90
2093 2225 1.269051 CCATCGTCGATCGTTCCATCA 60.269 52.381 15.94 0.00 40.80 3.07
2094 2226 1.269102 ACCATCGTCGATCGTTCCATC 60.269 52.381 15.94 0.00 40.80 3.51
2106 2238 5.753438 TCAACATCAATAAGCTACCATCGTC 59.247 40.000 0.00 0.00 0.00 4.20
2139 2271 7.931275 ACTAGTGAAATCAAAGGAAACAAGAC 58.069 34.615 0.00 0.00 0.00 3.01
2171 2304 9.071276 ACAATAATGAAGTGCTATAATGAAGGG 57.929 33.333 0.00 0.00 0.00 3.95
2199 2332 2.694213 TCGCATCGACAAAGAAATGGA 58.306 42.857 0.00 0.00 0.00 3.41
2201 2334 5.220080 CCAAAATCGCATCGACAAAGAAATG 60.220 40.000 0.00 0.00 39.18 2.32
2225 2358 1.672881 CAAATGGTCAATCCGGAGCTC 59.327 52.381 11.34 4.71 39.52 4.09
2240 2374 3.922240 CGGTGGAAAATCTTGAGCAAATG 59.078 43.478 0.00 0.00 0.00 2.32
2260 2394 3.251487 ACGTTAATCCAACTTTGAACCGG 59.749 43.478 0.00 0.00 34.77 5.28
2268 2402 5.595133 TCCCAAAAGAACGTTAATCCAACTT 59.405 36.000 0.00 0.00 34.77 2.66
2269 2403 5.134661 TCCCAAAAGAACGTTAATCCAACT 58.865 37.500 0.00 0.00 34.77 3.16
2270 2404 5.441709 TCCCAAAAGAACGTTAATCCAAC 57.558 39.130 0.00 0.00 0.00 3.77
2272 2406 5.317808 TGATCCCAAAAGAACGTTAATCCA 58.682 37.500 0.00 0.00 0.00 3.41
2274 2408 6.751888 CCATTGATCCCAAAAGAACGTTAATC 59.248 38.462 0.00 0.00 35.67 1.75
2275 2409 6.630071 CCATTGATCCCAAAAGAACGTTAAT 58.370 36.000 0.00 0.00 35.67 1.40
2277 2411 4.082463 GCCATTGATCCCAAAAGAACGTTA 60.082 41.667 0.00 0.00 35.67 3.18
2279 2413 2.231235 GCCATTGATCCCAAAAGAACGT 59.769 45.455 0.00 0.00 35.67 3.99
2280 2414 2.230992 TGCCATTGATCCCAAAAGAACG 59.769 45.455 0.00 0.00 35.67 3.95
2281 2415 3.588955 GTGCCATTGATCCCAAAAGAAC 58.411 45.455 0.00 0.00 35.67 3.01
2282 2416 2.230992 CGTGCCATTGATCCCAAAAGAA 59.769 45.455 0.00 0.00 35.67 2.52
2283 2417 1.818060 CGTGCCATTGATCCCAAAAGA 59.182 47.619 0.00 0.00 35.67 2.52
2284 2418 1.818060 TCGTGCCATTGATCCCAAAAG 59.182 47.619 0.00 0.00 35.67 2.27
2289 2426 0.179094 TACGTCGTGCCATTGATCCC 60.179 55.000 8.47 0.00 0.00 3.85
2315 2452 7.119116 GGCCAAAAGAAACCAATACCAAAATAG 59.881 37.037 0.00 0.00 0.00 1.73
2316 2453 6.937465 GGCCAAAAGAAACCAATACCAAAATA 59.063 34.615 0.00 0.00 0.00 1.40
2317 2454 5.767665 GGCCAAAAGAAACCAATACCAAAAT 59.232 36.000 0.00 0.00 0.00 1.82
2329 2466 3.557054 GGGGAAGAATGGCCAAAAGAAAC 60.557 47.826 10.96 0.00 0.00 2.78
2339 2476 3.217626 CACAGATAAGGGGAAGAATGGC 58.782 50.000 0.00 0.00 0.00 4.40
2342 2479 3.266772 TGTGCACAGATAAGGGGAAGAAT 59.733 43.478 17.42 0.00 0.00 2.40
2354 2491 5.510179 CCTCAATTTCCTTTTGTGCACAGAT 60.510 40.000 20.59 4.27 0.00 2.90
2355 2492 4.202141 CCTCAATTTCCTTTTGTGCACAGA 60.202 41.667 20.59 13.53 0.00 3.41
2359 2496 2.433604 TGCCTCAATTTCCTTTTGTGCA 59.566 40.909 0.00 0.00 33.70 4.57
2363 2500 3.321682 TCTGGTGCCTCAATTTCCTTTTG 59.678 43.478 0.00 0.00 0.00 2.44
2366 2503 2.978156 TCTGGTGCCTCAATTTCCTT 57.022 45.000 0.00 0.00 0.00 3.36
2368 2505 3.010200 AGATCTGGTGCCTCAATTTCC 57.990 47.619 0.00 0.00 0.00 3.13
2369 2506 5.371526 TCATAGATCTGGTGCCTCAATTTC 58.628 41.667 5.18 0.00 0.00 2.17
2370 2507 5.374921 CTCATAGATCTGGTGCCTCAATTT 58.625 41.667 5.18 0.00 0.00 1.82
2371 2508 4.202440 CCTCATAGATCTGGTGCCTCAATT 60.202 45.833 5.18 0.00 0.00 2.32
2372 2509 3.327172 CCTCATAGATCTGGTGCCTCAAT 59.673 47.826 5.18 0.00 0.00 2.57
2379 2516 4.020396 CCCTCAATCCTCATAGATCTGGTG 60.020 50.000 5.18 4.53 0.00 4.17
2390 2527 0.841961 CTCATGGCCCTCAATCCTCA 59.158 55.000 0.00 0.00 0.00 3.86
2419 2556 9.640952 CTAATAAATGGTCTCATCCCCTAAAAA 57.359 33.333 0.00 0.00 32.24 1.94
2420 2557 8.787818 ACTAATAAATGGTCTCATCCCCTAAAA 58.212 33.333 0.00 0.00 32.24 1.52
2421 2558 8.344939 ACTAATAAATGGTCTCATCCCCTAAA 57.655 34.615 0.00 0.00 32.24 1.85
2422 2559 7.947782 ACTAATAAATGGTCTCATCCCCTAA 57.052 36.000 0.00 0.00 32.24 2.69
2423 2560 7.947782 AACTAATAAATGGTCTCATCCCCTA 57.052 36.000 0.00 0.00 32.24 3.53
2424 2561 6.848562 AACTAATAAATGGTCTCATCCCCT 57.151 37.500 0.00 0.00 32.24 4.79
2425 2562 7.661847 CACTAACTAATAAATGGTCTCATCCCC 59.338 40.741 0.00 0.00 32.24 4.81
2426 2563 7.173390 GCACTAACTAATAAATGGTCTCATCCC 59.827 40.741 0.00 0.00 32.24 3.85
2427 2564 7.934120 AGCACTAACTAATAAATGGTCTCATCC 59.066 37.037 0.00 0.00 32.24 3.51
2428 2565 8.894768 AGCACTAACTAATAAATGGTCTCATC 57.105 34.615 0.00 0.00 32.24 2.92
2429 2566 9.113838 CAAGCACTAACTAATAAATGGTCTCAT 57.886 33.333 0.00 0.00 34.56 2.90
2430 2567 8.318412 TCAAGCACTAACTAATAAATGGTCTCA 58.682 33.333 0.00 0.00 0.00 3.27
2431 2568 8.604890 GTCAAGCACTAACTAATAAATGGTCTC 58.395 37.037 0.00 0.00 0.00 3.36
2432 2569 8.322091 AGTCAAGCACTAACTAATAAATGGTCT 58.678 33.333 0.00 0.00 31.37 3.85
2433 2570 8.391106 CAGTCAAGCACTAACTAATAAATGGTC 58.609 37.037 0.00 0.00 32.21 4.02
2434 2571 7.883311 ACAGTCAAGCACTAACTAATAAATGGT 59.117 33.333 0.00 0.00 32.21 3.55
2435 2572 8.268850 ACAGTCAAGCACTAACTAATAAATGG 57.731 34.615 0.00 0.00 32.21 3.16
2436 2573 9.760660 GAACAGTCAAGCACTAACTAATAAATG 57.239 33.333 0.00 0.00 32.21 2.32
2437 2574 8.656849 CGAACAGTCAAGCACTAACTAATAAAT 58.343 33.333 0.00 0.00 32.21 1.40
2438 2575 7.654520 ACGAACAGTCAAGCACTAACTAATAAA 59.345 33.333 0.00 0.00 32.21 1.40
2439 2576 7.149973 ACGAACAGTCAAGCACTAACTAATAA 58.850 34.615 0.00 0.00 32.21 1.40
2440 2577 6.684686 ACGAACAGTCAAGCACTAACTAATA 58.315 36.000 0.00 0.00 32.21 0.98
2441 2578 5.539048 ACGAACAGTCAAGCACTAACTAAT 58.461 37.500 0.00 0.00 32.21 1.73
2442 2579 4.940463 ACGAACAGTCAAGCACTAACTAA 58.060 39.130 0.00 0.00 32.21 2.24
2443 2580 4.579454 ACGAACAGTCAAGCACTAACTA 57.421 40.909 0.00 0.00 32.21 2.24
2444 2581 3.454371 ACGAACAGTCAAGCACTAACT 57.546 42.857 0.00 0.00 32.21 2.24
2445 2582 4.296690 AGTACGAACAGTCAAGCACTAAC 58.703 43.478 0.00 0.00 32.21 2.34
2446 2583 4.579454 AGTACGAACAGTCAAGCACTAA 57.421 40.909 0.00 0.00 32.21 2.24
2447 2584 4.543692 GAAGTACGAACAGTCAAGCACTA 58.456 43.478 0.00 0.00 32.21 2.74
2448 2585 3.381949 GAAGTACGAACAGTCAAGCACT 58.618 45.455 0.00 0.00 34.67 4.40
2449 2586 2.475487 GGAAGTACGAACAGTCAAGCAC 59.525 50.000 0.00 0.00 0.00 4.40
2450 2587 2.364324 AGGAAGTACGAACAGTCAAGCA 59.636 45.455 0.00 0.00 0.00 3.91
2451 2588 3.027974 AGGAAGTACGAACAGTCAAGC 57.972 47.619 0.00 0.00 0.00 4.01
2452 2589 4.617959 TCAAGGAAGTACGAACAGTCAAG 58.382 43.478 0.00 0.00 0.00 3.02
2453 2590 4.659111 TCAAGGAAGTACGAACAGTCAA 57.341 40.909 0.00 0.00 0.00 3.18
2454 2591 4.617959 CTTCAAGGAAGTACGAACAGTCA 58.382 43.478 0.00 0.00 35.21 3.41
2455 2592 3.429207 GCTTCAAGGAAGTACGAACAGTC 59.571 47.826 7.71 0.00 41.27 3.51
2456 2593 3.391049 GCTTCAAGGAAGTACGAACAGT 58.609 45.455 7.71 0.00 41.27 3.55
2457 2594 2.737252 GGCTTCAAGGAAGTACGAACAG 59.263 50.000 7.71 0.00 41.27 3.16
2458 2595 2.549349 GGGCTTCAAGGAAGTACGAACA 60.549 50.000 7.71 0.00 41.27 3.18
2459 2596 2.074576 GGGCTTCAAGGAAGTACGAAC 58.925 52.381 7.71 0.00 41.27 3.95
2460 2597 1.695242 TGGGCTTCAAGGAAGTACGAA 59.305 47.619 7.71 0.00 41.27 3.85
2461 2598 1.001633 GTGGGCTTCAAGGAAGTACGA 59.998 52.381 7.71 0.00 41.27 3.43
2462 2599 1.002087 AGTGGGCTTCAAGGAAGTACG 59.998 52.381 7.71 0.00 41.27 3.67
2463 2600 2.427506 CAGTGGGCTTCAAGGAAGTAC 58.572 52.381 7.71 5.35 41.27 2.73
2464 2601 1.351017 CCAGTGGGCTTCAAGGAAGTA 59.649 52.381 0.00 0.00 41.27 2.24
2465 2602 0.111253 CCAGTGGGCTTCAAGGAAGT 59.889 55.000 0.00 0.00 41.27 3.01
2466 2603 0.610232 CCCAGTGGGCTTCAAGGAAG 60.610 60.000 17.33 1.67 42.03 3.46
2467 2604 1.460255 CCCAGTGGGCTTCAAGGAA 59.540 57.895 17.33 0.00 35.35 3.36
2468 2605 3.170362 CCCAGTGGGCTTCAAGGA 58.830 61.111 17.33 0.00 35.35 3.36
2478 2615 1.856539 ATGGACTCCAAGCCCAGTGG 61.857 60.000 0.63 0.63 36.95 4.00
2479 2616 0.679002 CATGGACTCCAAGCCCAGTG 60.679 60.000 0.66 0.00 36.95 3.66
2480 2617 1.687612 CATGGACTCCAAGCCCAGT 59.312 57.895 0.66 0.00 36.95 4.00
2481 2618 1.077212 CCATGGACTCCAAGCCCAG 60.077 63.158 5.56 0.00 36.95 4.45
2482 2619 2.615465 CCCATGGACTCCAAGCCCA 61.615 63.158 15.22 0.00 36.95 5.36
2483 2620 2.276740 CCCATGGACTCCAAGCCC 59.723 66.667 15.22 0.00 36.95 5.19
2484 2621 1.635817 TAGCCCATGGACTCCAAGCC 61.636 60.000 15.22 0.00 36.95 4.35
2485 2622 0.475906 ATAGCCCATGGACTCCAAGC 59.524 55.000 15.22 6.00 36.95 4.01
2486 2623 1.770658 TCATAGCCCATGGACTCCAAG 59.229 52.381 15.22 0.00 36.95 3.61
2487 2624 1.490490 GTCATAGCCCATGGACTCCAA 59.510 52.381 15.22 0.00 36.95 3.53
2488 2625 1.131638 GTCATAGCCCATGGACTCCA 58.868 55.000 15.22 0.00 38.19 3.86
2489 2626 0.398318 GGTCATAGCCCATGGACTCC 59.602 60.000 15.22 0.00 35.16 3.85
2499 2636 1.760875 TCCACTCGGGGTCATAGCC 60.761 63.158 0.00 0.00 37.22 3.93
2500 2637 1.327690 TGTCCACTCGGGGTCATAGC 61.328 60.000 0.00 0.00 37.22 2.97
2501 2638 0.747255 CTGTCCACTCGGGGTCATAG 59.253 60.000 0.00 0.00 37.22 2.23
2502 2639 0.686441 CCTGTCCACTCGGGGTCATA 60.686 60.000 0.00 0.00 37.22 2.15
2503 2640 1.990060 CCTGTCCACTCGGGGTCAT 60.990 63.158 0.00 0.00 37.22 3.06
2504 2641 2.603473 CCTGTCCACTCGGGGTCA 60.603 66.667 0.00 0.00 37.22 4.02
2505 2642 3.391382 CCCTGTCCACTCGGGGTC 61.391 72.222 2.68 0.00 46.12 4.46
2521 2658 0.910088 AGAAGTAGACACCAGCCCCC 60.910 60.000 0.00 0.00 0.00 5.40
2522 2659 0.984995 AAGAAGTAGACACCAGCCCC 59.015 55.000 0.00 0.00 0.00 5.80
2523 2660 1.903183 AGAAGAAGTAGACACCAGCCC 59.097 52.381 0.00 0.00 0.00 5.19
2524 2661 2.093921 GGAGAAGAAGTAGACACCAGCC 60.094 54.545 0.00 0.00 0.00 4.85
2525 2662 2.093921 GGGAGAAGAAGTAGACACCAGC 60.094 54.545 0.00 0.00 0.00 4.85
2526 2663 3.436243 AGGGAGAAGAAGTAGACACCAG 58.564 50.000 0.00 0.00 0.00 4.00
2527 2664 3.544698 AGGGAGAAGAAGTAGACACCA 57.455 47.619 0.00 0.00 0.00 4.17
2528 2665 4.528987 AGAAAGGGAGAAGAAGTAGACACC 59.471 45.833 0.00 0.00 0.00 4.16
2529 2666 5.731957 AGAAAGGGAGAAGAAGTAGACAC 57.268 43.478 0.00 0.00 0.00 3.67
2530 2667 6.078664 AGAAGAAAGGGAGAAGAAGTAGACA 58.921 40.000 0.00 0.00 0.00 3.41
2531 2668 6.599356 AGAAGAAAGGGAGAAGAAGTAGAC 57.401 41.667 0.00 0.00 0.00 2.59
2532 2669 7.013834 AGAAGAAGAAAGGGAGAAGAAGTAGA 58.986 38.462 0.00 0.00 0.00 2.59
2533 2670 7.239763 AGAAGAAGAAAGGGAGAAGAAGTAG 57.760 40.000 0.00 0.00 0.00 2.57
2534 2671 7.619512 AAGAAGAAGAAAGGGAGAAGAAGTA 57.380 36.000 0.00 0.00 0.00 2.24
2535 2672 6.508030 AAGAAGAAGAAAGGGAGAAGAAGT 57.492 37.500 0.00 0.00 0.00 3.01
2536 2673 7.500559 TCAAAAGAAGAAGAAAGGGAGAAGAAG 59.499 37.037 0.00 0.00 0.00 2.85
2537 2674 7.346471 TCAAAAGAAGAAGAAAGGGAGAAGAA 58.654 34.615 0.00 0.00 0.00 2.52
2538 2675 6.900194 TCAAAAGAAGAAGAAAGGGAGAAGA 58.100 36.000 0.00 0.00 0.00 2.87
2539 2676 7.309073 CCATCAAAAGAAGAAGAAAGGGAGAAG 60.309 40.741 0.00 0.00 0.00 2.85
2540 2677 6.491403 CCATCAAAAGAAGAAGAAAGGGAGAA 59.509 38.462 0.00 0.00 0.00 2.87
2541 2678 6.006449 CCATCAAAAGAAGAAGAAAGGGAGA 58.994 40.000 0.00 0.00 0.00 3.71
2542 2679 5.184671 CCCATCAAAAGAAGAAGAAAGGGAG 59.815 44.000 0.00 0.00 33.62 4.30
2543 2680 5.079643 CCCATCAAAAGAAGAAGAAAGGGA 58.920 41.667 0.00 0.00 33.62 4.20
2544 2681 4.835056 ACCCATCAAAAGAAGAAGAAAGGG 59.165 41.667 0.00 0.00 36.22 3.95
2545 2682 6.410942 AACCCATCAAAAGAAGAAGAAAGG 57.589 37.500 0.00 0.00 0.00 3.11
2546 2683 7.439356 GGAAAACCCATCAAAAGAAGAAGAAAG 59.561 37.037 0.00 0.00 34.14 2.62
2547 2684 7.272244 GGAAAACCCATCAAAAGAAGAAGAAA 58.728 34.615 0.00 0.00 34.14 2.52
2548 2685 6.183360 GGGAAAACCCATCAAAAGAAGAAGAA 60.183 38.462 0.00 0.00 36.34 2.52
2549 2686 5.304357 GGGAAAACCCATCAAAAGAAGAAGA 59.696 40.000 0.00 0.00 36.34 2.87
2550 2687 5.541845 GGGAAAACCCATCAAAAGAAGAAG 58.458 41.667 0.00 0.00 36.34 2.85
2551 2688 5.545063 GGGAAAACCCATCAAAAGAAGAA 57.455 39.130 0.00 0.00 36.34 2.52
2575 2712 5.903875 GCCCGAGCTTAGAAAAAGGATTTTC 60.904 44.000 6.03 6.03 41.33 2.29
2576 2713 4.082190 GCCCGAGCTTAGAAAAAGGATTTT 60.082 41.667 0.00 0.00 43.06 1.82
2577 2714 3.444034 GCCCGAGCTTAGAAAAAGGATTT 59.556 43.478 0.00 0.00 36.24 2.17
2578 2715 3.017442 GCCCGAGCTTAGAAAAAGGATT 58.983 45.455 0.00 0.00 35.50 3.01
2579 2716 2.026262 TGCCCGAGCTTAGAAAAAGGAT 60.026 45.455 0.00 0.00 40.80 3.24
2580 2717 1.349688 TGCCCGAGCTTAGAAAAAGGA 59.650 47.619 0.00 0.00 40.80 3.36
2581 2718 1.821216 TGCCCGAGCTTAGAAAAAGG 58.179 50.000 0.00 0.00 40.80 3.11
2582 2719 5.560966 TTATTGCCCGAGCTTAGAAAAAG 57.439 39.130 0.00 0.00 40.80 2.27
2583 2720 5.968528 TTTATTGCCCGAGCTTAGAAAAA 57.031 34.783 0.00 0.00 40.80 1.94
2584 2721 5.968528 TTTTATTGCCCGAGCTTAGAAAA 57.031 34.783 0.00 0.00 40.80 2.29
2585 2722 5.968528 TTTTTATTGCCCGAGCTTAGAAA 57.031 34.783 0.00 0.00 40.80 2.52
2648 2785 4.500035 GCCAAATTGTCTACCACGGAAAAA 60.500 41.667 0.00 0.00 0.00 1.94
2649 2786 3.004944 GCCAAATTGTCTACCACGGAAAA 59.995 43.478 0.00 0.00 0.00 2.29
2650 2787 2.554893 GCCAAATTGTCTACCACGGAAA 59.445 45.455 0.00 0.00 0.00 3.13
2651 2788 2.156098 GCCAAATTGTCTACCACGGAA 58.844 47.619 0.00 0.00 0.00 4.30
2652 2789 1.816074 GCCAAATTGTCTACCACGGA 58.184 50.000 0.00 0.00 0.00 4.69
2653 2790 0.446222 CGCCAAATTGTCTACCACGG 59.554 55.000 0.00 0.00 0.00 4.94
2654 2791 0.179200 GCGCCAAATTGTCTACCACG 60.179 55.000 0.00 0.00 0.00 4.94
2655 2792 0.179200 CGCGCCAAATTGTCTACCAC 60.179 55.000 0.00 0.00 0.00 4.16
2656 2793 0.604243 ACGCGCCAAATTGTCTACCA 60.604 50.000 5.73 0.00 0.00 3.25
2657 2794 0.179200 CACGCGCCAAATTGTCTACC 60.179 55.000 5.73 0.00 0.00 3.18
2658 2795 0.793861 TCACGCGCCAAATTGTCTAC 59.206 50.000 5.73 0.00 0.00 2.59
2659 2796 1.396648 CATCACGCGCCAAATTGTCTA 59.603 47.619 5.73 0.00 0.00 2.59
2660 2797 0.168788 CATCACGCGCCAAATTGTCT 59.831 50.000 5.73 0.00 0.00 3.41
2661 2798 0.109781 ACATCACGCGCCAAATTGTC 60.110 50.000 5.73 0.00 0.00 3.18
2662 2799 0.109781 GACATCACGCGCCAAATTGT 60.110 50.000 5.73 1.22 0.00 2.71
2663 2800 0.798009 GGACATCACGCGCCAAATTG 60.798 55.000 5.73 0.00 0.00 2.32
2664 2801 1.506262 GGACATCACGCGCCAAATT 59.494 52.632 5.73 0.00 0.00 1.82
2665 2802 2.749865 CGGACATCACGCGCCAAAT 61.750 57.895 5.73 0.00 0.00 2.32
2666 2803 3.418913 CGGACATCACGCGCCAAA 61.419 61.111 5.73 0.00 0.00 3.28
2667 2804 4.365505 TCGGACATCACGCGCCAA 62.366 61.111 5.73 0.00 0.00 4.52
2671 2808 3.925362 TTGGGTCGGACATCACGCG 62.925 63.158 3.53 3.53 0.00 6.01
2672 2809 1.024579 AATTGGGTCGGACATCACGC 61.025 55.000 10.76 0.00 0.00 5.34
2673 2810 1.448985 AAATTGGGTCGGACATCACG 58.551 50.000 10.76 0.00 0.00 4.35
2674 2811 2.817258 TGAAAATTGGGTCGGACATCAC 59.183 45.455 10.76 0.00 0.00 3.06
2675 2812 3.147553 TGAAAATTGGGTCGGACATCA 57.852 42.857 10.76 4.97 0.00 3.07
2676 2813 5.530915 TCATATGAAAATTGGGTCGGACATC 59.469 40.000 10.76 2.26 0.00 3.06
2677 2814 5.445069 TCATATGAAAATTGGGTCGGACAT 58.555 37.500 10.76 0.00 0.00 3.06
2678 2815 4.849518 TCATATGAAAATTGGGTCGGACA 58.150 39.130 10.76 0.00 0.00 4.02
2679 2816 6.391227 AATCATATGAAAATTGGGTCGGAC 57.609 37.500 9.99 0.00 0.00 4.79
2680 2817 6.183360 CCAAATCATATGAAAATTGGGTCGGA 60.183 38.462 25.87 0.00 34.99 4.55
2681 2818 5.984926 CCAAATCATATGAAAATTGGGTCGG 59.015 40.000 25.87 11.33 34.99 4.79
2682 2819 6.697019 GTCCAAATCATATGAAAATTGGGTCG 59.303 38.462 29.27 15.75 37.16 4.79
2683 2820 7.555087 TGTCCAAATCATATGAAAATTGGGTC 58.445 34.615 29.27 24.61 37.16 4.46
2684 2821 7.493499 TGTCCAAATCATATGAAAATTGGGT 57.507 32.000 29.27 6.84 37.16 4.51
2685 2822 8.042515 AGTTGTCCAAATCATATGAAAATTGGG 58.957 33.333 29.27 19.54 37.16 4.12
2686 2823 8.875803 CAGTTGTCCAAATCATATGAAAATTGG 58.124 33.333 26.79 26.79 37.53 3.16
2687 2824 9.642327 TCAGTTGTCCAAATCATATGAAAATTG 57.358 29.630 9.99 14.19 0.00 2.32
2688 2825 9.865321 CTCAGTTGTCCAAATCATATGAAAATT 57.135 29.630 9.99 2.88 0.00 1.82
2689 2826 8.472413 CCTCAGTTGTCCAAATCATATGAAAAT 58.528 33.333 9.99 0.00 0.00 1.82
2690 2827 7.577426 GCCTCAGTTGTCCAAATCATATGAAAA 60.577 37.037 9.99 0.00 0.00 2.29
2691 2828 6.127647 GCCTCAGTTGTCCAAATCATATGAAA 60.128 38.462 9.99 0.00 0.00 2.69
2692 2829 5.357878 GCCTCAGTTGTCCAAATCATATGAA 59.642 40.000 9.99 0.00 0.00 2.57
2693 2830 4.883585 GCCTCAGTTGTCCAAATCATATGA 59.116 41.667 8.10 8.10 0.00 2.15
2694 2831 5.179045 GCCTCAGTTGTCCAAATCATATG 57.821 43.478 0.00 0.00 0.00 1.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.