Multiple sequence alignment - TraesCS3A01G104800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G104800 chr3A 100.000 8748 0 0 1 8748 68274101 68282848 0.000000e+00 16155.0
1 TraesCS3A01G104800 chr3A 91.216 296 26 0 2479 2774 68276507 68276802 3.800000e-108 403.0
2 TraesCS3A01G104800 chr3A 91.216 296 26 0 2407 2702 68276579 68276874 3.800000e-108 403.0
3 TraesCS3A01G104800 chr3A 91.388 209 18 0 2560 2768 68276516 68276724 4.000000e-73 287.0
4 TraesCS3A01G104800 chr3A 91.388 209 18 0 2416 2624 68276660 68276868 4.000000e-73 287.0
5 TraesCS3A01G104800 chr3A 91.765 85 7 0 2206 2290 68276243 68276327 1.540000e-22 119.0
6 TraesCS3A01G104800 chr3A 91.765 85 7 0 2143 2227 68276306 68276390 1.540000e-22 119.0
7 TraesCS3A01G104800 chr3A 93.939 66 3 1 8519 8584 68282529 68282593 2.010000e-16 99.0
8 TraesCS3A01G104800 chr3A 93.939 66 3 1 8429 8493 68282619 68282684 2.010000e-16 99.0
9 TraesCS3A01G104800 chr3B 93.813 4655 203 41 3877 8493 95147716 95152323 0.000000e+00 6922.0
10 TraesCS3A01G104800 chr3B 94.042 1393 77 6 2479 3867 95146343 95147733 0.000000e+00 2108.0
11 TraesCS3A01G104800 chr3B 87.259 1554 125 33 739 2240 95144707 95146239 0.000000e+00 1705.0
12 TraesCS3A01G104800 chr3B 94.779 498 26 0 2205 2702 95146141 95146638 0.000000e+00 776.0
13 TraesCS3A01G104800 chr3B 86.081 546 28 21 1 523 95143997 95144517 2.150000e-150 544.0
14 TraesCS3A01G104800 chr3B 93.023 215 15 0 2560 2774 95146352 95146566 1.830000e-81 315.0
15 TraesCS3A01G104800 chr3B 90.435 230 16 6 8519 8748 95152259 95152482 1.850000e-76 298.0
16 TraesCS3A01G104800 chr3B 89.908 218 22 0 2407 2624 95146415 95146632 1.860000e-71 281.0
17 TraesCS3A01G104800 chr3D 95.353 3163 128 8 2479 5635 59284406 59287555 0.000000e+00 5009.0
18 TraesCS3A01G104800 chr3D 93.168 2737 121 37 5797 8493 59287556 59290266 0.000000e+00 3958.0
19 TraesCS3A01G104800 chr3D 87.875 1468 115 28 804 2228 59282864 59284311 0.000000e+00 1666.0
20 TraesCS3A01G104800 chr3D 92.453 477 36 0 2226 2702 59284225 59284701 0.000000e+00 682.0
21 TraesCS3A01G104800 chr3D 82.534 521 21 22 1 494 59282124 59282601 2.290000e-105 394.0
22 TraesCS3A01G104800 chr3D 92.093 215 17 0 2560 2774 59284415 59284629 3.970000e-78 303.0
23 TraesCS3A01G104800 chr3D 90.367 218 21 0 2407 2624 59284478 59284695 4.000000e-73 287.0
24 TraesCS3A01G104800 chr3D 89.041 219 14 7 8519 8737 59290208 59290416 6.740000e-66 263.0
25 TraesCS3A01G104800 chr7B 90.625 64 3 2 5520 5581 731441673 731441611 2.020000e-11 82.4
26 TraesCS3A01G104800 chr7B 88.060 67 5 2 5525 5588 162116709 162116643 9.420000e-10 76.8
27 TraesCS3A01G104800 chr7D 88.060 67 5 2 5525 5588 197879571 197879505 9.420000e-10 76.8
28 TraesCS3A01G104800 chr5A 85.714 70 5 3 5524 5588 591128300 591128369 1.580000e-07 69.4
29 TraesCS3A01G104800 chr5A 90.000 50 4 1 6085 6133 473042756 473042707 7.330000e-06 63.9
30 TraesCS3A01G104800 chr5D 91.837 49 3 1 6086 6133 370554402 370554354 5.670000e-07 67.6
31 TraesCS3A01G104800 chr5B 84.507 71 5 4 5524 5588 577877446 577877516 2.040000e-06 65.8
32 TraesCS3A01G104800 chr2A 88.000 50 4 1 5531 5578 676477661 676477710 3.410000e-04 58.4
33 TraesCS3A01G104800 chr2A 97.143 35 0 1 6092 6126 678426828 678426861 3.410000e-04 58.4
34 TraesCS3A01G104800 chr4A 88.000 50 2 3 6087 6132 19952444 19952395 1.000000e-03 56.5
35 TraesCS3A01G104800 chr4A 88.000 50 2 3 6087 6132 20001264 20001215 1.000000e-03 56.5
36 TraesCS3A01G104800 chr2D 88.000 50 2 4 6086 6131 175594185 175594136 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G104800 chr3A 68274101 68282848 8747 False 16155.000000 16155 100.000000 1 8748 1 chr3A.!!$F1 8747
1 TraesCS3A01G104800 chr3A 68276243 68276874 631 False 269.666667 403 91.456333 2143 2774 6 chr3A.!!$F2 631
2 TraesCS3A01G104800 chr3B 95143997 95152482 8485 False 1618.625000 6922 91.167500 1 8748 8 chr3B.!!$F1 8747
3 TraesCS3A01G104800 chr3D 59282124 59290416 8292 False 1570.250000 5009 90.360500 1 8737 8 chr3D.!!$F1 8736

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
657 698 0.041238 TACCTGTCCCTGCTGCTACT 59.959 55.0 0.00 0.00 0.00 2.57 F
1361 1458 0.250467 TGAGCAAACCACAGGAGAGC 60.250 55.0 0.00 0.00 0.00 4.09 F
2561 2780 0.116342 TGGCACCTCCTCCTTCACTA 59.884 55.0 0.00 0.00 35.26 2.74 F
2623 2842 0.035056 AATGTGCCACTAGTGCCTCC 60.035 55.0 17.86 5.83 0.00 4.30 F
2629 2848 0.107945 CCACTAGTGCCTCCTGCTTC 60.108 60.0 17.86 0.00 42.00 3.86 F
3623 3844 0.234884 CACCAACGAAAGGAGAACGC 59.765 55.0 0.00 0.00 0.00 4.84 F
5574 5829 0.252239 TGGGAGCTTCTAGCACTGGA 60.252 55.0 1.09 0.00 45.56 3.86 F
5886 6141 0.457443 TAGAGATGTGCAGCTGGTCG 59.543 55.0 17.12 0.00 0.00 4.79 F
7070 7329 0.679505 TCCTCCTCAACGTCTTGGTG 59.320 55.0 0.00 0.00 0.00 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1964 2099 0.251165 GAAGTAGGGGGTGCTGCAAA 60.251 55.0 2.77 0.0 0.00 3.68 R
2592 2811 0.453390 GGCACATTAGGCTTCACAGC 59.547 55.0 0.00 0.0 46.52 4.40 R
3585 3806 0.316841 GTCGGAGGATGAGATCTGCC 59.683 60.0 0.00 0.0 0.00 4.85 R
4133 4384 0.615331 GAGTTGATGGTGCTCTGGGA 59.385 55.0 0.00 0.0 0.00 4.37 R
4314 4565 1.127567 AGGCTCTGGGCACACTAACA 61.128 55.0 0.21 0.0 44.01 2.41 R
5612 5867 0.706433 ATGAAGGATGGTGCCAAGGT 59.294 50.0 0.00 0.0 0.00 3.50 R
7021 7280 0.392461 ACCCGAATGTTCCCATGACG 60.392 55.0 0.00 0.0 34.05 4.35 R
7567 7826 0.673022 CAGCTGGAGTGAAGACAGGC 60.673 60.0 5.57 0.0 32.98 4.85 R
8655 8963 1.013596 CAGTTTCACACCACGCAGAA 58.986 50.0 0.00 0.0 0.00 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 84 2.371259 GGGCAGGAGAGGAGAACCC 61.371 68.421 0.00 0.00 36.73 4.11
132 138 1.079888 CCATCCAAACGCAAAGCCC 60.080 57.895 0.00 0.00 0.00 5.19
151 157 2.039974 CGGCCACTGCTACATTGCA 61.040 57.895 2.24 0.00 41.05 4.08
234 257 3.155167 GCGGGAGGACGAGGGATT 61.155 66.667 0.00 0.00 35.47 3.01
267 290 3.507009 CGAGAGGGACGGACGGAC 61.507 72.222 0.00 0.00 0.00 4.79
268 291 2.045143 GAGAGGGACGGACGGACT 60.045 66.667 0.00 0.00 0.00 3.85
299 322 3.160269 GGGCTAGCTGGATTAATTGCAT 58.840 45.455 15.72 0.00 0.00 3.96
348 376 2.202703 GCGGCGGTACCACTACTG 60.203 66.667 13.54 4.27 39.03 2.74
394 422 3.758425 GGTTAAACTAAACCAGAGGCCA 58.242 45.455 5.01 0.00 46.85 5.36
424 452 2.025359 GATTCTTTCGGCCTCGTGCG 62.025 60.000 0.00 0.00 42.61 5.34
425 453 2.781595 ATTCTTTCGGCCTCGTGCGT 62.782 55.000 0.00 0.00 42.61 5.24
426 454 3.777925 CTTTCGGCCTCGTGCGTG 61.778 66.667 0.00 0.00 42.61 5.34
484 517 4.610945 CAGGAAGCAACGAATGTTTTCTT 58.389 39.130 0.00 0.00 36.04 2.52
485 518 4.676924 CAGGAAGCAACGAATGTTTTCTTC 59.323 41.667 0.00 9.58 36.04 2.87
486 519 4.338118 AGGAAGCAACGAATGTTTTCTTCA 59.662 37.500 15.60 0.00 41.83 3.02
489 522 3.049912 GCAACGAATGTTTTCTTCACCC 58.950 45.455 0.00 0.00 35.72 4.61
508 546 1.373371 GGCCGTCCGTCGTTAGTTT 60.373 57.895 0.00 0.00 37.94 2.66
509 547 0.945743 GGCCGTCCGTCGTTAGTTTT 60.946 55.000 0.00 0.00 37.94 2.43
510 548 0.436150 GCCGTCCGTCGTTAGTTTTC 59.564 55.000 0.00 0.00 37.94 2.29
511 549 1.063031 CCGTCCGTCGTTAGTTTTCC 58.937 55.000 0.00 0.00 37.94 3.13
512 550 1.336240 CCGTCCGTCGTTAGTTTTCCT 60.336 52.381 0.00 0.00 37.94 3.36
513 551 1.981533 CGTCCGTCGTTAGTTTTCCTC 59.018 52.381 0.00 0.00 34.52 3.71
515 553 1.879380 TCCGTCGTTAGTTTTCCTCGA 59.121 47.619 0.00 0.00 0.00 4.04
516 554 1.981533 CCGTCGTTAGTTTTCCTCGAC 59.018 52.381 0.00 0.00 44.49 4.20
517 555 1.981533 CGTCGTTAGTTTTCCTCGACC 59.018 52.381 9.71 0.00 44.91 4.79
518 556 2.332104 GTCGTTAGTTTTCCTCGACCC 58.668 52.381 0.00 0.00 42.94 4.46
519 557 1.068333 TCGTTAGTTTTCCTCGACCCG 60.068 52.381 0.00 0.00 0.00 5.28
520 558 1.718396 GTTAGTTTTCCTCGACCCGG 58.282 55.000 0.00 0.00 0.00 5.73
521 559 0.609662 TTAGTTTTCCTCGACCCGGG 59.390 55.000 22.25 22.25 0.00 5.73
522 560 1.891722 TAGTTTTCCTCGACCCGGGC 61.892 60.000 24.08 13.09 0.00 6.13
523 561 4.024545 TTTTCCTCGACCCGGGCC 62.025 66.667 24.08 9.30 0.00 5.80
554 592 2.096406 CGCATCGGTTTCGTGCTG 59.904 61.111 0.00 0.00 39.45 4.41
557 595 2.034879 CATCGGTTTCGTGCTGCCT 61.035 57.895 0.00 0.00 37.69 4.75
563 601 0.955428 GTTTCGTGCTGCCTGGATCA 60.955 55.000 0.00 0.00 0.00 2.92
575 613 3.564027 GGATCACCGCCGCTTTCG 61.564 66.667 0.00 0.00 0.00 3.46
582 620 2.399611 CGCCGCTTTCGCCTTTAG 59.600 61.111 0.00 0.00 0.00 1.85
583 621 2.100410 GCCGCTTTCGCCTTTAGC 59.900 61.111 0.00 0.00 38.52 3.09
585 623 1.087771 GCCGCTTTCGCCTTTAGCTA 61.088 55.000 0.00 0.00 40.39 3.32
586 624 1.365699 CCGCTTTCGCCTTTAGCTAA 58.634 50.000 0.86 0.86 40.39 3.09
587 625 1.940613 CCGCTTTCGCCTTTAGCTAAT 59.059 47.619 7.08 0.00 40.39 1.73
593 631 6.357240 CGCTTTCGCCTTTAGCTAATAAATTC 59.643 38.462 7.08 0.00 40.39 2.17
595 633 7.377131 GCTTTCGCCTTTAGCTAATAAATTCTG 59.623 37.037 7.08 0.00 40.39 3.02
596 634 6.300354 TCGCCTTTAGCTAATAAATTCTGC 57.700 37.500 7.08 1.33 40.39 4.26
598 636 6.017934 TCGCCTTTAGCTAATAAATTCTGCTG 60.018 38.462 7.08 0.00 40.39 4.41
599 637 5.917447 GCCTTTAGCTAATAAATTCTGCTGC 59.083 40.000 7.08 0.00 38.99 5.25
600 638 6.238869 GCCTTTAGCTAATAAATTCTGCTGCT 60.239 38.462 7.08 0.00 38.99 4.24
601 639 7.041098 GCCTTTAGCTAATAAATTCTGCTGCTA 60.041 37.037 7.08 0.00 38.99 3.49
602 640 8.502387 CCTTTAGCTAATAAATTCTGCTGCTAG 58.498 37.037 7.08 0.00 32.93 3.42
603 641 7.969536 TTAGCTAATAAATTCTGCTGCTAGG 57.030 36.000 0.86 0.00 34.06 3.02
604 642 5.312079 AGCTAATAAATTCTGCTGCTAGGG 58.688 41.667 0.00 0.00 31.63 3.53
605 643 5.066593 GCTAATAAATTCTGCTGCTAGGGT 58.933 41.667 0.00 0.00 0.00 4.34
609 650 2.276309 ATTCTGCTGCTAGGGTGGGC 62.276 60.000 0.00 0.00 0.00 5.36
625 666 1.271926 TGGGCTCTCTTTTTAGGGTGC 60.272 52.381 0.00 0.00 0.00 5.01
630 671 3.600388 CTCTCTTTTTAGGGTGCGTGAT 58.400 45.455 0.00 0.00 0.00 3.06
633 674 5.553123 TCTCTTTTTAGGGTGCGTGATTTA 58.447 37.500 0.00 0.00 0.00 1.40
634 675 5.410439 TCTCTTTTTAGGGTGCGTGATTTAC 59.590 40.000 0.00 0.00 0.00 2.01
635 676 5.064558 TCTTTTTAGGGTGCGTGATTTACA 58.935 37.500 0.00 0.00 0.00 2.41
638 679 5.968528 TTTAGGGTGCGTGATTTACATTT 57.031 34.783 0.00 0.00 0.00 2.32
639 680 7.450124 TTTTAGGGTGCGTGATTTACATTTA 57.550 32.000 0.00 0.00 0.00 1.40
640 681 4.957759 AGGGTGCGTGATTTACATTTAC 57.042 40.909 0.00 0.00 0.00 2.01
641 682 3.692593 AGGGTGCGTGATTTACATTTACC 59.307 43.478 0.00 0.00 0.00 2.85
643 684 4.438200 GGGTGCGTGATTTACATTTACCTG 60.438 45.833 0.00 0.00 32.22 4.00
644 685 4.155280 GGTGCGTGATTTACATTTACCTGT 59.845 41.667 0.00 0.00 0.00 4.00
646 687 4.393680 TGCGTGATTTACATTTACCTGTCC 59.606 41.667 0.00 0.00 0.00 4.02
647 688 4.201881 GCGTGATTTACATTTACCTGTCCC 60.202 45.833 0.00 0.00 0.00 4.46
648 689 5.183228 CGTGATTTACATTTACCTGTCCCT 58.817 41.667 0.00 0.00 0.00 4.20
649 690 5.064707 CGTGATTTACATTTACCTGTCCCTG 59.935 44.000 0.00 0.00 0.00 4.45
650 691 4.947388 TGATTTACATTTACCTGTCCCTGC 59.053 41.667 0.00 0.00 0.00 4.85
651 692 4.650972 TTTACATTTACCTGTCCCTGCT 57.349 40.909 0.00 0.00 0.00 4.24
652 693 2.496899 ACATTTACCTGTCCCTGCTG 57.503 50.000 0.00 0.00 0.00 4.41
653 694 1.098050 CATTTACCTGTCCCTGCTGC 58.902 55.000 0.00 0.00 0.00 5.25
654 695 0.995024 ATTTACCTGTCCCTGCTGCT 59.005 50.000 0.00 0.00 0.00 4.24
655 696 1.651737 TTTACCTGTCCCTGCTGCTA 58.348 50.000 0.00 0.00 0.00 3.49
656 697 0.902531 TTACCTGTCCCTGCTGCTAC 59.097 55.000 0.00 0.00 0.00 3.58
657 698 0.041238 TACCTGTCCCTGCTGCTACT 59.959 55.000 0.00 0.00 0.00 2.57
659 700 0.392193 CCTGTCCCTGCTGCTACTTG 60.392 60.000 0.00 0.00 0.00 3.16
660 701 0.322975 CTGTCCCTGCTGCTACTTGT 59.677 55.000 0.00 0.00 0.00 3.16
661 702 1.550524 CTGTCCCTGCTGCTACTTGTA 59.449 52.381 0.00 0.00 0.00 2.41
692 765 5.005740 TGGTACTGTACTGTACTGGTACTG 58.994 45.833 30.31 21.87 41.64 2.74
709 782 1.737355 CTGGTGGTGTTTGGTGCCTG 61.737 60.000 0.00 0.00 0.00 4.85
710 783 2.417097 GTGGTGTTTGGTGCCTGC 59.583 61.111 0.00 0.00 0.00 4.85
711 784 2.837291 TGGTGTTTGGTGCCTGCC 60.837 61.111 0.00 0.00 0.00 4.85
712 785 2.521708 GGTGTTTGGTGCCTGCCT 60.522 61.111 0.00 0.00 0.00 4.75
713 786 2.133641 GGTGTTTGGTGCCTGCCTT 61.134 57.895 0.00 0.00 0.00 4.35
714 787 1.067916 GTGTTTGGTGCCTGCCTTG 59.932 57.895 0.00 0.00 0.00 3.61
715 788 2.132996 TGTTTGGTGCCTGCCTTGG 61.133 57.895 0.00 0.00 0.00 3.61
728 801 4.168291 CTTGGCCGCCTCCTCCTC 62.168 72.222 11.61 0.00 0.00 3.71
736 809 2.767496 CCTCCTCCTCCTGGGCAG 60.767 72.222 0.00 0.00 34.39 4.85
737 810 2.040278 CTCCTCCTCCTGGGCAGT 59.960 66.667 0.00 0.00 34.39 4.40
789 866 1.222113 GCTGCTCTTCCCTACACCC 59.778 63.158 0.00 0.00 0.00 4.61
796 873 0.983378 CTTCCCTACACCCTCCCTGG 60.983 65.000 0.00 0.00 0.00 4.45
797 874 3.090532 CCCTACACCCTCCCTGGC 61.091 72.222 0.00 0.00 0.00 4.85
917 994 4.742201 GGCTCCGCGACTGCTGAA 62.742 66.667 8.23 0.00 39.65 3.02
918 995 3.482783 GCTCCGCGACTGCTGAAC 61.483 66.667 8.23 0.00 39.65 3.18
921 998 4.717629 CCGCGACTGCTGAACCGA 62.718 66.667 8.23 0.00 39.65 4.69
924 1001 2.651361 CGACTGCTGAACCGAGGT 59.349 61.111 0.00 0.00 0.00 3.85
925 1002 1.734477 CGACTGCTGAACCGAGGTG 60.734 63.158 0.00 0.00 0.00 4.00
926 1003 1.374758 GACTGCTGAACCGAGGTGG 60.375 63.158 0.00 0.00 46.41 4.61
927 1004 2.743928 CTGCTGAACCGAGGTGGC 60.744 66.667 0.00 2.11 43.94 5.01
928 1005 3.241530 TGCTGAACCGAGGTGGCT 61.242 61.111 13.27 0.00 43.94 4.75
929 1006 2.743928 GCTGAACCGAGGTGGCTG 60.744 66.667 0.00 0.00 43.94 4.85
932 1023 2.099652 CTGAACCGAGGTGGCTGTGA 62.100 60.000 0.00 0.00 43.94 3.58
934 1025 0.741221 GAACCGAGGTGGCTGTGATC 60.741 60.000 0.00 0.00 43.94 2.92
936 1027 2.187946 CGAGGTGGCTGTGATCCC 59.812 66.667 0.00 0.00 0.00 3.85
937 1028 2.592308 GAGGTGGCTGTGATCCCC 59.408 66.667 0.00 0.00 0.00 4.81
938 1029 1.997874 GAGGTGGCTGTGATCCCCT 60.998 63.158 0.00 0.00 0.00 4.79
943 1034 1.000396 GGCTGTGATCCCCTTGCTT 60.000 57.895 0.00 0.00 0.00 3.91
948 1039 1.078214 TGATCCCCTTGCTTCTGCG 60.078 57.895 0.00 0.00 43.34 5.18
957 1048 3.497932 GCTTCTGCGGCAGCTCTG 61.498 66.667 24.78 14.35 45.42 3.35
971 1062 3.756739 CTCTGGCTAGGAGCTTGTG 57.243 57.895 0.00 0.00 41.99 3.33
972 1063 0.461693 CTCTGGCTAGGAGCTTGTGC 60.462 60.000 0.00 0.00 41.99 4.57
973 1064 1.812922 CTGGCTAGGAGCTTGTGCG 60.813 63.158 0.00 0.00 45.42 5.34
974 1065 3.198489 GGCTAGGAGCTTGTGCGC 61.198 66.667 0.00 0.00 45.42 6.09
975 1066 3.558411 GCTAGGAGCTTGTGCGCG 61.558 66.667 0.00 0.00 45.42 6.86
976 1067 3.558411 CTAGGAGCTTGTGCGCGC 61.558 66.667 27.26 27.26 45.42 6.86
1014 1105 2.510238 GAGATGCGGCGTCTTGCT 60.510 61.111 24.40 3.74 45.43 3.91
1041 1132 3.858989 GCGCTGCTTCTCGCTTCC 61.859 66.667 0.00 0.00 46.92 3.46
1063 1154 0.615331 TCTTGGATCCACAGGTGAGC 59.385 55.000 15.91 0.00 0.00 4.26
1066 1157 0.770499 TGGATCCACAGGTGAGCAAA 59.230 50.000 11.44 0.00 0.00 3.68
1070 1161 1.967319 TCCACAGGTGAGCAAAGTTC 58.033 50.000 0.00 0.00 0.00 3.01
1082 1174 1.489574 CAAAGTTCAGCATTGCGCAA 58.510 45.000 27.24 27.24 46.13 4.85
1083 1175 1.454276 CAAAGTTCAGCATTGCGCAAG 59.546 47.619 28.62 19.92 46.13 4.01
1105 1197 3.368531 GCTTCGGCTTTCTTCTCCTCTTA 60.369 47.826 0.00 0.00 38.08 2.10
1161 1255 2.653234 ATTGGGGATCAGCTCATGTC 57.347 50.000 0.00 0.00 0.00 3.06
1162 1256 1.588239 TTGGGGATCAGCTCATGTCT 58.412 50.000 0.00 0.00 0.00 3.41
1172 1266 0.532417 GCTCATGTCTAGCTGCTGGG 60.532 60.000 13.43 5.27 37.01 4.45
1183 1277 1.226859 CTGCTGGGCAATGCGAATG 60.227 57.895 0.00 0.00 38.41 2.67
1188 1282 2.169146 GGGCAATGCGAATGCTTGC 61.169 57.895 0.00 12.70 45.87 4.01
1189 1283 1.153706 GGCAATGCGAATGCTTGCT 60.154 52.632 17.38 0.00 45.86 3.91
1203 1297 3.159472 TGCTTGCTTGTTTCTCCATGAT 58.841 40.909 0.00 0.00 0.00 2.45
1210 1304 5.951148 TGCTTGTTTCTCCATGATATTTCCA 59.049 36.000 0.00 0.00 0.00 3.53
1218 1312 4.803452 TCCATGATATTTCCACCCCTTTC 58.197 43.478 0.00 0.00 0.00 2.62
1219 1313 3.897505 CCATGATATTTCCACCCCTTTCC 59.102 47.826 0.00 0.00 0.00 3.13
1220 1314 3.680777 TGATATTTCCACCCCTTTCCC 57.319 47.619 0.00 0.00 0.00 3.97
1221 1315 2.246327 TGATATTTCCACCCCTTTCCCC 59.754 50.000 0.00 0.00 0.00 4.81
1253 1350 0.603065 AATTTGAGGCGGAAACCTGC 59.397 50.000 0.00 0.00 41.32 4.85
1361 1458 0.250467 TGAGCAAACCACAGGAGAGC 60.250 55.000 0.00 0.00 0.00 4.09
1396 1511 3.225104 TGTGCTCCTTGCTTCTGAATTT 58.775 40.909 0.00 0.00 43.37 1.82
1409 1524 5.393896 GCTTCTGAATTTTCATCAAGAGGGG 60.394 44.000 12.82 0.00 36.46 4.79
1438 1554 2.098298 CGGCGTCTTGGCATTTCG 59.902 61.111 0.00 0.00 45.16 3.46
1463 1579 0.890996 CCCTGTCTTTGGCTGTCACC 60.891 60.000 0.00 0.00 0.00 4.02
1542 1658 0.730265 TTTGGCCGTGATATCGCAAC 59.270 50.000 16.20 6.98 0.00 4.17
1646 1772 2.672381 TCTTGCTTTGCAACTTTTGTGC 59.328 40.909 0.00 0.00 43.99 4.57
1659 1785 4.986622 ACTTTTGTGCTGAAAAGACACTC 58.013 39.130 20.75 0.00 43.02 3.51
1660 1786 4.458989 ACTTTTGTGCTGAAAAGACACTCA 59.541 37.500 20.75 0.00 43.02 3.41
1694 1820 5.053145 CAGATAGCAACCTGTAGATTGTCC 58.947 45.833 0.00 0.00 0.00 4.02
1708 1838 8.234136 TGTAGATTGTCCGATACTAAACTCAT 57.766 34.615 0.00 0.00 0.00 2.90
1760 1894 2.840651 ACTGCATACTTTACCTGCTCCT 59.159 45.455 0.00 0.00 36.84 3.69
1811 1945 4.925861 GATCTGGCGCCTGCTCCC 62.926 72.222 29.70 12.42 42.25 4.30
1822 1956 3.006728 TGCTCCCGGGGTTGGTAG 61.007 66.667 23.50 10.83 0.00 3.18
1844 1978 0.389817 CGCCTGTCGATCAAGGACAA 60.390 55.000 14.09 0.00 43.27 3.18
1850 1984 2.003301 GTCGATCAAGGACAAGCTTCC 58.997 52.381 0.00 0.00 34.56 3.46
1928 2062 6.973474 GCTCTGAATTTTCAAAGATCATCAGG 59.027 38.462 0.00 0.00 36.64 3.86
1935 2070 6.764308 TTTCAAAGATCATCAGGGACATTC 57.236 37.500 0.00 0.00 0.00 2.67
1963 2098 2.175715 AGGCCCTTCCTTACATTGATCC 59.824 50.000 0.00 0.00 44.75 3.36
1964 2099 2.175715 GGCCCTTCCTTACATTGATCCT 59.824 50.000 0.00 0.00 0.00 3.24
1993 2128 1.561542 CCCCCTACTTCATCAGCAAGT 59.438 52.381 0.00 0.00 37.80 3.16
2558 2777 1.152030 ACTGGCACCTCCTCCTTCA 60.152 57.895 0.00 0.00 35.26 3.02
2559 2778 1.298014 CTGGCACCTCCTCCTTCAC 59.702 63.158 0.00 0.00 35.26 3.18
2560 2779 1.152030 TGGCACCTCCTCCTTCACT 60.152 57.895 0.00 0.00 35.26 3.41
2561 2780 0.116342 TGGCACCTCCTCCTTCACTA 59.884 55.000 0.00 0.00 35.26 2.74
2562 2781 0.537653 GGCACCTCCTCCTTCACTAC 59.462 60.000 0.00 0.00 0.00 2.73
2563 2782 0.537653 GCACCTCCTCCTTCACTACC 59.462 60.000 0.00 0.00 0.00 3.18
2564 2783 1.897647 GCACCTCCTCCTTCACTACCT 60.898 57.143 0.00 0.00 0.00 3.08
2565 2784 2.541466 CACCTCCTCCTTCACTACCTT 58.459 52.381 0.00 0.00 0.00 3.50
2566 2785 2.498078 CACCTCCTCCTTCACTACCTTC 59.502 54.545 0.00 0.00 0.00 3.46
2567 2786 2.111972 ACCTCCTCCTTCACTACCTTCA 59.888 50.000 0.00 0.00 0.00 3.02
2568 2787 3.173965 CCTCCTCCTTCACTACCTTCAA 58.826 50.000 0.00 0.00 0.00 2.69
2569 2788 3.055747 CCTCCTCCTTCACTACCTTCAAC 60.056 52.174 0.00 0.00 0.00 3.18
2570 2789 3.835395 CTCCTCCTTCACTACCTTCAACT 59.165 47.826 0.00 0.00 0.00 3.16
2571 2790 3.833070 TCCTCCTTCACTACCTTCAACTC 59.167 47.826 0.00 0.00 0.00 3.01
2572 2791 3.578716 CCTCCTTCACTACCTTCAACTCA 59.421 47.826 0.00 0.00 0.00 3.41
2573 2792 4.322349 CCTCCTTCACTACCTTCAACTCAG 60.322 50.000 0.00 0.00 0.00 3.35
2574 2793 3.578716 TCCTTCACTACCTTCAACTCAGG 59.421 47.826 0.00 0.00 37.45 3.86
2575 2794 3.330267 CTTCACTACCTTCAACTCAGGC 58.670 50.000 0.00 0.00 34.32 4.85
2576 2795 2.609747 TCACTACCTTCAACTCAGGCT 58.390 47.619 0.00 0.00 34.32 4.58
2577 2796 2.563179 TCACTACCTTCAACTCAGGCTC 59.437 50.000 0.00 0.00 34.32 4.70
2578 2797 1.903183 ACTACCTTCAACTCAGGCTCC 59.097 52.381 0.00 0.00 34.32 4.70
2579 2798 2.183679 CTACCTTCAACTCAGGCTCCT 58.816 52.381 0.00 0.00 34.32 3.69
2580 2799 2.327325 ACCTTCAACTCAGGCTCCTA 57.673 50.000 0.00 0.00 34.32 2.94
2581 2800 1.903183 ACCTTCAACTCAGGCTCCTAC 59.097 52.381 0.00 0.00 34.32 3.18
2582 2801 2.183679 CCTTCAACTCAGGCTCCTACT 58.816 52.381 0.00 0.00 0.00 2.57
2583 2802 2.167487 CCTTCAACTCAGGCTCCTACTC 59.833 54.545 0.00 0.00 0.00 2.59
2584 2803 1.853963 TCAACTCAGGCTCCTACTCC 58.146 55.000 0.00 0.00 0.00 3.85
2585 2804 1.077169 TCAACTCAGGCTCCTACTCCA 59.923 52.381 0.00 0.00 0.00 3.86
2586 2805 2.114616 CAACTCAGGCTCCTACTCCAT 58.885 52.381 0.00 0.00 0.00 3.41
2587 2806 2.080654 ACTCAGGCTCCTACTCCATC 57.919 55.000 0.00 0.00 0.00 3.51
2588 2807 1.573376 ACTCAGGCTCCTACTCCATCT 59.427 52.381 0.00 0.00 0.00 2.90
2589 2808 1.962807 CTCAGGCTCCTACTCCATCTG 59.037 57.143 0.00 0.00 0.00 2.90
2590 2809 1.289231 TCAGGCTCCTACTCCATCTGT 59.711 52.381 0.00 0.00 0.00 3.41
2591 2810 1.411977 CAGGCTCCTACTCCATCTGTG 59.588 57.143 0.00 0.00 0.00 3.66
2593 2812 0.105778 GCTCCTACTCCATCTGTGGC 59.894 60.000 0.00 0.00 45.63 5.01
2594 2813 1.786937 CTCCTACTCCATCTGTGGCT 58.213 55.000 0.00 0.00 45.63 4.75
2595 2814 1.411977 CTCCTACTCCATCTGTGGCTG 59.588 57.143 0.00 0.00 45.63 4.85
2596 2815 1.198713 CCTACTCCATCTGTGGCTGT 58.801 55.000 0.00 0.00 45.63 4.40
2597 2816 1.134580 CCTACTCCATCTGTGGCTGTG 60.135 57.143 0.00 0.00 45.63 3.66
2598 2817 1.827344 CTACTCCATCTGTGGCTGTGA 59.173 52.381 0.00 0.00 45.63 3.58
2599 2818 1.059098 ACTCCATCTGTGGCTGTGAA 58.941 50.000 0.00 0.00 45.63 3.18
2600 2819 1.002888 ACTCCATCTGTGGCTGTGAAG 59.997 52.381 0.00 0.00 45.63 3.02
2601 2820 0.321919 TCCATCTGTGGCTGTGAAGC 60.322 55.000 0.00 0.00 45.63 3.86
2611 2830 0.453390 GCTGTGAAGCCTAATGTGCC 59.547 55.000 0.00 0.00 0.00 5.01
2612 2831 1.825090 CTGTGAAGCCTAATGTGCCA 58.175 50.000 0.00 0.00 0.00 4.92
2613 2832 1.470098 CTGTGAAGCCTAATGTGCCAC 59.530 52.381 0.00 0.00 0.00 5.01
2614 2833 1.073763 TGTGAAGCCTAATGTGCCACT 59.926 47.619 0.00 0.00 0.00 4.00
2615 2834 2.304470 TGTGAAGCCTAATGTGCCACTA 59.696 45.455 0.00 0.00 0.00 2.74
2616 2835 2.939103 GTGAAGCCTAATGTGCCACTAG 59.061 50.000 0.00 0.00 0.00 2.57
2617 2836 2.571653 TGAAGCCTAATGTGCCACTAGT 59.428 45.455 0.00 0.00 0.00 2.57
2618 2837 2.698855 AGCCTAATGTGCCACTAGTG 57.301 50.000 16.34 16.34 0.00 2.74
2619 2838 1.017387 GCCTAATGTGCCACTAGTGC 58.983 55.000 17.86 13.07 0.00 4.40
2620 2839 1.668419 CCTAATGTGCCACTAGTGCC 58.332 55.000 17.86 7.19 0.00 5.01
2621 2840 1.210478 CCTAATGTGCCACTAGTGCCT 59.790 52.381 17.86 0.00 0.00 4.75
2622 2841 2.555199 CTAATGTGCCACTAGTGCCTC 58.445 52.381 17.86 8.17 0.00 4.70
2623 2842 0.035056 AATGTGCCACTAGTGCCTCC 60.035 55.000 17.86 5.83 0.00 4.30
2624 2843 0.911525 ATGTGCCACTAGTGCCTCCT 60.912 55.000 17.86 0.00 0.00 3.69
2625 2844 1.078848 GTGCCACTAGTGCCTCCTG 60.079 63.158 17.86 3.80 0.00 3.86
2626 2845 2.124942 GCCACTAGTGCCTCCTGC 60.125 66.667 17.86 10.35 41.77 4.85
2627 2846 2.664081 GCCACTAGTGCCTCCTGCT 61.664 63.158 17.86 0.00 42.00 4.24
2628 2847 1.986413 CCACTAGTGCCTCCTGCTT 59.014 57.895 17.86 0.00 42.00 3.91
2629 2848 0.107945 CCACTAGTGCCTCCTGCTTC 60.108 60.000 17.86 0.00 42.00 3.86
2794 3013 4.385825 TCTGTGAACAATCAACCAGGTAC 58.614 43.478 0.00 0.00 37.30 3.34
2825 3044 5.104776 TGGATCAGGTATATATTCTGCTGGC 60.105 44.000 9.77 0.00 0.00 4.85
2833 3052 6.149474 GGTATATATTCTGCTGGCAACGATTT 59.851 38.462 0.00 0.00 42.51 2.17
2863 3082 3.347216 AGGTTCCCGAATTCTTGATGTG 58.653 45.455 3.52 0.00 0.00 3.21
2882 3101 8.309163 TGATGTGCCAAAAGTTCATAAAAATC 57.691 30.769 0.00 0.00 0.00 2.17
2994 3213 2.125512 CGGCAGTTCCTCCTTCCG 60.126 66.667 0.00 0.00 0.00 4.30
3016 3235 5.116180 CGCTTCAGGTAAATCACTTCCATA 58.884 41.667 0.00 0.00 0.00 2.74
3021 3240 6.830912 TCAGGTAAATCACTTCCATAGGATG 58.169 40.000 0.00 0.00 33.73 3.51
3054 3273 4.155099 TGACAGGTTGCATATGTTTTACCG 59.845 41.667 4.29 6.37 0.00 4.02
3083 3302 4.422840 GTTCTTCTTAGTAGTTCCTCCGC 58.577 47.826 0.00 0.00 0.00 5.54
3327 3548 2.161855 ACCATGACATTCAACGTGCAT 58.838 42.857 0.00 0.00 0.00 3.96
3585 3806 1.377725 CCTAAGCCAGCACCCACTG 60.378 63.158 0.00 0.00 37.42 3.66
3623 3844 0.234884 CACCAACGAAAGGAGAACGC 59.765 55.000 0.00 0.00 0.00 4.84
3749 3970 4.287552 AGTTCAGTGTTATAGGTCCCGAT 58.712 43.478 0.00 0.00 0.00 4.18
3838 4059 7.147620 ACCGATGATTCAAGGTAATGGTAGTTA 60.148 37.037 13.47 0.00 34.83 2.24
4004 4252 1.396653 CCCCTCTAATGGCAGCAAAG 58.603 55.000 0.00 0.00 0.00 2.77
4034 4285 4.051237 GCCTTCTTACTTTGCCTTGTTTG 58.949 43.478 0.00 0.00 0.00 2.93
4040 4291 6.977213 TCTTACTTTGCCTTGTTTGGTATTC 58.023 36.000 0.00 0.00 0.00 1.75
4063 4314 6.120220 TCGTCTCCTGATTTCAGTACAGATA 58.880 40.000 6.81 0.00 42.27 1.98
4070 4321 9.958180 TCCTGATTTCAGTACAGATATTTGAAA 57.042 29.630 6.81 6.64 42.27 2.69
4133 4384 4.338879 CACCAATTCCTCCTGAAACAGAT 58.661 43.478 0.00 0.00 36.33 2.90
4138 4389 2.191400 TCCTCCTGAAACAGATCCCAG 58.809 52.381 0.00 0.00 32.44 4.45
4247 4498 5.592282 TGTCCTTTCAAACTTTACATGCTGA 59.408 36.000 0.00 0.00 0.00 4.26
4298 4549 7.380536 TGATTCTTACCTAGTGAAGCGTTAAA 58.619 34.615 0.00 0.00 0.00 1.52
4683 4934 3.452755 TGTTGTCTATCCAGGTATGCG 57.547 47.619 0.00 0.00 0.00 4.73
4685 4936 3.123804 GTTGTCTATCCAGGTATGCGTG 58.876 50.000 0.00 0.00 0.00 5.34
4711 4962 4.016444 TCTTTGCTTGTGTTCTTGGACTT 58.984 39.130 0.00 0.00 0.00 3.01
4904 5155 1.687493 AGGGCTTCCTCCTTCTCCG 60.687 63.158 0.00 0.00 35.60 4.63
4981 5232 1.212935 CCTGGGGGTTGATGTAGGAAG 59.787 57.143 0.00 0.00 0.00 3.46
5293 5544 5.416952 AGTTCCAACTGGCTATTGAATTCAG 59.583 40.000 8.41 0.00 37.98 3.02
5294 5545 3.696051 TCCAACTGGCTATTGAATTCAGC 59.304 43.478 8.41 8.82 34.44 4.26
5314 5565 4.627467 CAGCGTGTCCTATAGGCAAATATC 59.373 45.833 14.50 3.01 34.44 1.63
5424 5677 3.627577 ACATGCTTTCGAACATCCCATAC 59.372 43.478 0.00 0.00 0.00 2.39
5425 5678 2.276201 TGCTTTCGAACATCCCATACG 58.724 47.619 0.00 0.00 0.00 3.06
5444 5697 1.472480 CGGAAAAACTGCACCCCATAG 59.528 52.381 0.00 0.00 0.00 2.23
5446 5699 2.897326 GGAAAAACTGCACCCCATAGTT 59.103 45.455 0.00 0.00 36.29 2.24
5538 5791 7.813148 CACGATGTTATCCTCGTATAATCCTTT 59.187 37.037 4.17 0.00 45.63 3.11
5545 5800 5.455872 TCCTCGTATAATCCTTTCAGACCT 58.544 41.667 0.00 0.00 0.00 3.85
5574 5829 0.252239 TGGGAGCTTCTAGCACTGGA 60.252 55.000 1.09 0.00 45.56 3.86
5598 5853 9.838339 GGATCTGTCTTTATAGAAAATGGAAGA 57.162 33.333 0.00 0.00 30.65 2.87
5612 5867 3.040655 TGGAAGACTCATTATCCCCGA 57.959 47.619 0.00 0.00 0.00 5.14
5616 5871 3.047695 AGACTCATTATCCCCGACCTT 57.952 47.619 0.00 0.00 0.00 3.50
5642 5897 5.533903 GCACCATCCTTCATGAAATGTCTAT 59.466 40.000 9.88 0.00 46.80 1.98
5704 5959 1.555075 AGCCACTGCCTCTAAATTCGA 59.445 47.619 0.00 0.00 38.69 3.71
5719 5974 2.941453 TTCGAGCGCTATTCTCAAGT 57.059 45.000 11.50 0.00 0.00 3.16
5720 5975 2.194800 TCGAGCGCTATTCTCAAGTG 57.805 50.000 11.50 0.00 0.00 3.16
5734 5989 9.838339 CTATTCTCAAGTGTTTACTTATGGGAT 57.162 33.333 0.00 0.00 45.12 3.85
5745 6000 9.420118 TGTTTACTTATGGGATCATTGCTAAAT 57.580 29.630 0.00 0.00 34.96 1.40
5755 6010 7.721842 TGGGATCATTGCTAAATTTATAACGGA 59.278 33.333 0.00 1.13 0.00 4.69
5847 6102 6.519679 TCTAACGGTTAATTCAGTAGCTGA 57.480 37.500 0.00 0.00 38.87 4.26
5886 6141 0.457443 TAGAGATGTGCAGCTGGTCG 59.543 55.000 17.12 0.00 0.00 4.79
5887 6142 2.435586 AGATGTGCAGCTGGTCGC 60.436 61.111 17.12 6.90 39.57 5.19
5956 6211 4.389992 CGTAGACTTGATGATGTGCAACTT 59.610 41.667 0.00 0.00 38.04 2.66
6097 6352 5.386924 TCAAAAGGTCGAAAAGGGGATAAA 58.613 37.500 0.00 0.00 0.00 1.40
6146 6402 7.441428 GCACACAGCCAACTTTTAGTAAAAGG 61.441 42.308 29.84 19.05 43.86 3.11
6387 6643 1.867233 GGTCAAGTATGGCAGCATACG 59.133 52.381 7.27 0.00 41.53 3.06
6446 6702 3.942130 AAGGCTACAAATGGCTTTGAC 57.058 42.857 13.77 5.46 45.96 3.18
6623 6879 5.357314 TCACCGAAATTTGGTCAAGTTGTTA 59.643 36.000 0.99 0.00 37.72 2.41
6635 6891 3.373748 TCAAGTTGTTAGGCATATGCGTG 59.626 43.478 28.43 12.23 43.26 5.34
6644 6900 1.271054 GGCATATGCGTGGAGGAGAAT 60.271 52.381 21.04 0.00 43.26 2.40
6647 6903 0.829990 TATGCGTGGAGGAGAATGCA 59.170 50.000 0.00 0.00 42.20 3.96
6751 7010 4.162131 TCTGCCAGCATATAGAAGTGTCAA 59.838 41.667 0.00 0.00 0.00 3.18
6786 7045 8.851145 TGAAACTAATTACTTAATGTGTTGGCA 58.149 29.630 0.00 0.00 0.00 4.92
6802 7061 1.090052 GGCACATTGTAGGAGCCGAC 61.090 60.000 0.64 0.00 35.42 4.79
7021 7280 2.821366 CAGCACATCTCCACCCGC 60.821 66.667 0.00 0.00 0.00 6.13
7070 7329 0.679505 TCCTCCTCAACGTCTTGGTG 59.320 55.000 0.00 0.00 0.00 4.17
7508 7767 2.178521 CTCGTACGACAGCGGCTT 59.821 61.111 15.28 0.00 43.17 4.35
7561 7820 6.058183 GGTGCTATTATCTGAGATGTTTGGT 58.942 40.000 4.96 0.00 0.00 3.67
7567 7826 6.480524 TTATCTGAGATGTTTGGTTCAACG 57.519 37.500 4.96 0.00 0.00 4.10
7587 7846 0.972134 CCTGTCTTCACTCCAGCTGA 59.028 55.000 17.39 0.00 0.00 4.26
7588 7847 1.337635 CCTGTCTTCACTCCAGCTGAC 60.338 57.143 17.39 2.82 0.00 3.51
7702 7961 1.423395 GTAGTATGAGCGAGCATGGC 58.577 55.000 0.00 0.00 41.64 4.40
7754 8014 6.204882 ACAGTGTAGCAATAGGTGAGTTTTTC 59.795 38.462 0.00 0.00 0.00 2.29
7755 8015 6.428159 CAGTGTAGCAATAGGTGAGTTTTTCT 59.572 38.462 0.00 0.00 0.00 2.52
7757 8017 7.173390 AGTGTAGCAATAGGTGAGTTTTTCTTC 59.827 37.037 0.00 0.00 0.00 2.87
7785 8048 0.534412 AGCTTCCAGTCTCGACATGG 59.466 55.000 0.00 4.87 33.68 3.66
7808 8071 8.033178 TGGATATTCAGATGACTGGACATAAA 57.967 34.615 0.00 0.00 43.60 1.40
7854 8117 8.620416 GTGTACATTATGCATGTGGAGATAAAA 58.380 33.333 10.16 0.00 46.37 1.52
7856 8119 7.281040 ACATTATGCATGTGGAGATAAAAGG 57.719 36.000 10.16 0.00 45.12 3.11
7857 8120 5.772825 TTATGCATGTGGAGATAAAAGGC 57.227 39.130 10.16 0.00 0.00 4.35
7858 8121 3.370840 TGCATGTGGAGATAAAAGGCT 57.629 42.857 0.00 0.00 0.00 4.58
7859 8122 4.502105 TGCATGTGGAGATAAAAGGCTA 57.498 40.909 0.00 0.00 0.00 3.93
7891 8188 6.198639 AGTTCAGGATTATCAGAGTACCTGT 58.801 40.000 0.00 3.04 43.39 4.00
7893 8190 7.285858 AGTTCAGGATTATCAGAGTACCTGTAC 59.714 40.741 0.00 0.00 43.39 2.90
7909 8206 6.406400 GTACCTGTACAAGATCTGCTCAGATT 60.406 42.308 13.05 1.25 40.52 2.40
7919 8216 2.833943 TCTGCTCAGATTTGGCTCTACA 59.166 45.455 0.00 0.00 31.41 2.74
7920 8217 3.453717 TCTGCTCAGATTTGGCTCTACAT 59.546 43.478 0.00 0.00 31.41 2.29
7921 8218 4.080695 TCTGCTCAGATTTGGCTCTACATT 60.081 41.667 0.00 0.00 31.41 2.71
7922 8219 4.592942 TGCTCAGATTTGGCTCTACATTT 58.407 39.130 0.00 0.00 0.00 2.32
7923 8220 4.397103 TGCTCAGATTTGGCTCTACATTTG 59.603 41.667 0.00 0.00 0.00 2.32
7924 8221 4.201990 GCTCAGATTTGGCTCTACATTTGG 60.202 45.833 0.00 0.00 0.00 3.28
7925 8222 4.922206 TCAGATTTGGCTCTACATTTGGT 58.078 39.130 0.00 0.00 0.00 3.67
7926 8223 5.324409 TCAGATTTGGCTCTACATTTGGTT 58.676 37.500 0.00 0.00 0.00 3.67
7927 8224 5.774690 TCAGATTTGGCTCTACATTTGGTTT 59.225 36.000 0.00 0.00 0.00 3.27
7928 8225 5.865552 CAGATTTGGCTCTACATTTGGTTTG 59.134 40.000 0.00 0.00 0.00 2.93
7990 8287 0.742990 TACGCCTGCCTTCCGATTTG 60.743 55.000 0.00 0.00 0.00 2.32
7993 8290 1.459450 GCCTGCCTTCCGATTTGTAA 58.541 50.000 0.00 0.00 0.00 2.41
7994 8291 2.024414 GCCTGCCTTCCGATTTGTAAT 58.976 47.619 0.00 0.00 0.00 1.89
7996 8293 3.016736 CCTGCCTTCCGATTTGTAATGT 58.983 45.455 0.00 0.00 0.00 2.71
8072 8371 5.243060 GGTTAGCTGTTTGGTAGGAATTGTT 59.757 40.000 0.00 0.00 0.00 2.83
8124 8427 3.581024 TTGCCATGTGAATTTCAGCTC 57.419 42.857 0.00 0.00 0.00 4.09
8129 8432 3.444916 CATGTGAATTTCAGCTCCATGC 58.555 45.455 12.18 0.00 43.29 4.06
8133 8436 1.470098 GAATTTCAGCTCCATGCACGT 59.530 47.619 0.00 0.00 45.94 4.49
8134 8437 2.401583 ATTTCAGCTCCATGCACGTA 57.598 45.000 0.00 0.00 45.94 3.57
8135 8438 1.438651 TTTCAGCTCCATGCACGTAC 58.561 50.000 0.00 0.00 45.94 3.67
8136 8439 0.320050 TTCAGCTCCATGCACGTACA 59.680 50.000 0.00 0.00 45.94 2.90
8168 8471 4.036380 TGCTGCAATGAAGATGATAGCTTG 59.964 41.667 0.00 0.00 33.45 4.01
8190 8493 6.389830 TGTCAGTGTTGTGATTATTTGCTT 57.610 33.333 0.00 0.00 0.00 3.91
8192 8495 6.262944 TGTCAGTGTTGTGATTATTTGCTTCT 59.737 34.615 0.00 0.00 0.00 2.85
8193 8496 7.141363 GTCAGTGTTGTGATTATTTGCTTCTT 58.859 34.615 0.00 0.00 0.00 2.52
8194 8497 7.324616 GTCAGTGTTGTGATTATTTGCTTCTTC 59.675 37.037 0.00 0.00 0.00 2.87
8195 8498 7.013178 TCAGTGTTGTGATTATTTGCTTCTTCA 59.987 33.333 0.00 0.00 0.00 3.02
8196 8499 7.113965 CAGTGTTGTGATTATTTGCTTCTTCAC 59.886 37.037 0.00 0.00 35.27 3.18
8197 8500 6.917477 GTGTTGTGATTATTTGCTTCTTCACA 59.083 34.615 0.00 0.00 41.03 3.58
8198 8501 7.434897 GTGTTGTGATTATTTGCTTCTTCACAA 59.565 33.333 11.12 11.12 46.19 3.33
8216 8519 7.757624 TCTTCACAATTCACAACTTGTTTTACC 59.242 33.333 0.00 0.00 33.45 2.85
8240 8543 7.976175 ACCAGTGAAATTCTTTTCTGAAGAAAC 59.024 33.333 4.99 0.53 43.01 2.78
8296 8599 8.325787 TCTCTCCTCTAGTCAGATTGGATATAC 58.674 40.741 0.00 0.00 27.80 1.47
8297 8600 8.225863 TCTCCTCTAGTCAGATTGGATATACT 57.774 38.462 0.00 0.00 27.80 2.12
8298 8601 8.325787 TCTCCTCTAGTCAGATTGGATATACTC 58.674 40.741 0.00 0.00 27.80 2.59
8333 8637 5.499139 TTTGCTGTGGAACTTGTTAAGAG 57.501 39.130 0.00 0.00 38.04 2.85
8348 8652 9.236006 ACTTGTTAAGAGCTGATGTATTTTGAT 57.764 29.630 0.00 0.00 0.00 2.57
8355 8659 9.638176 AAGAGCTGATGTATTTTGATTAGGAAT 57.362 29.630 0.00 0.00 0.00 3.01
8398 8702 2.655090 TTCTGCAACATTCCAGGACA 57.345 45.000 0.00 0.00 0.00 4.02
8412 8719 2.430465 CAGGACACACCCTTCAGAATG 58.570 52.381 0.00 0.00 40.05 2.67
8435 8743 1.831736 TGAGTTAGCTCTAAGGGCACC 59.168 52.381 8.15 0.00 46.01 5.01
8451 8759 4.400529 GGCACCTTCTTTTCCTGAAAAA 57.599 40.909 6.53 0.00 39.49 1.94
8467 8775 9.889128 TTCCTGAAAAATTTCACTTCATTTTCT 57.111 25.926 4.52 0.00 41.88 2.52
8474 8782 9.546428 AAAATTTCACTTCATTTTCTAGTTGGG 57.454 29.630 0.00 0.00 28.34 4.12
8475 8783 6.648879 TTTCACTTCATTTTCTAGTTGGGG 57.351 37.500 0.00 0.00 0.00 4.96
8476 8784 5.576563 TCACTTCATTTTCTAGTTGGGGA 57.423 39.130 0.00 0.00 0.00 4.81
8477 8785 6.139679 TCACTTCATTTTCTAGTTGGGGAT 57.860 37.500 0.00 0.00 0.00 3.85
8478 8786 6.180472 TCACTTCATTTTCTAGTTGGGGATC 58.820 40.000 0.00 0.00 0.00 3.36
8479 8787 5.945784 CACTTCATTTTCTAGTTGGGGATCA 59.054 40.000 0.00 0.00 0.00 2.92
8480 8788 6.434028 CACTTCATTTTCTAGTTGGGGATCAA 59.566 38.462 0.00 0.00 0.00 2.57
8481 8789 7.010160 ACTTCATTTTCTAGTTGGGGATCAAA 58.990 34.615 0.00 0.00 37.08 2.69
8482 8790 7.508977 ACTTCATTTTCTAGTTGGGGATCAAAA 59.491 33.333 0.00 0.00 37.08 2.44
8483 8791 7.466746 TCATTTTCTAGTTGGGGATCAAAAG 57.533 36.000 0.00 0.00 37.08 2.27
8484 8792 7.010160 TCATTTTCTAGTTGGGGATCAAAAGT 58.990 34.615 0.00 0.00 37.08 2.66
8485 8793 7.508977 TCATTTTCTAGTTGGGGATCAAAAGTT 59.491 33.333 0.00 0.00 37.08 2.66
8486 8794 7.669089 TTTTCTAGTTGGGGATCAAAAGTTT 57.331 32.000 0.00 0.00 37.08 2.66
8487 8795 6.894339 TTCTAGTTGGGGATCAAAAGTTTC 57.106 37.500 0.00 0.00 37.08 2.78
8488 8796 5.947663 TCTAGTTGGGGATCAAAAGTTTCA 58.052 37.500 0.00 0.00 37.08 2.69
8489 8797 6.003950 TCTAGTTGGGGATCAAAAGTTTCAG 58.996 40.000 0.00 0.00 37.08 3.02
8490 8798 3.321968 AGTTGGGGATCAAAAGTTTCAGC 59.678 43.478 0.00 0.00 37.08 4.26
8491 8799 3.243359 TGGGGATCAAAAGTTTCAGCT 57.757 42.857 0.00 0.00 0.00 4.24
8492 8800 3.157087 TGGGGATCAAAAGTTTCAGCTC 58.843 45.455 0.00 0.00 0.00 4.09
8493 8801 3.181429 TGGGGATCAAAAGTTTCAGCTCT 60.181 43.478 0.00 0.00 0.00 4.09
8494 8802 3.441922 GGGGATCAAAAGTTTCAGCTCTC 59.558 47.826 0.00 0.00 0.00 3.20
8495 8803 4.074970 GGGATCAAAAGTTTCAGCTCTCA 58.925 43.478 0.00 0.00 0.00 3.27
8496 8804 4.083057 GGGATCAAAAGTTTCAGCTCTCAC 60.083 45.833 0.00 0.00 0.00 3.51
8497 8805 4.759183 GGATCAAAAGTTTCAGCTCTCACT 59.241 41.667 0.00 0.00 0.00 3.41
8498 8806 5.240403 GGATCAAAAGTTTCAGCTCTCACTT 59.760 40.000 0.00 0.00 0.00 3.16
8499 8807 5.741388 TCAAAAGTTTCAGCTCTCACTTC 57.259 39.130 2.23 0.00 0.00 3.01
8500 8808 5.185454 TCAAAAGTTTCAGCTCTCACTTCA 58.815 37.500 2.23 0.00 0.00 3.02
8501 8809 5.824624 TCAAAAGTTTCAGCTCTCACTTCAT 59.175 36.000 2.23 0.00 0.00 2.57
8502 8810 6.319658 TCAAAAGTTTCAGCTCTCACTTCATT 59.680 34.615 2.23 0.00 0.00 2.57
8503 8811 6.705863 AAAGTTTCAGCTCTCACTTCATTT 57.294 33.333 2.23 0.00 0.00 2.32
8504 8812 6.705863 AAGTTTCAGCTCTCACTTCATTTT 57.294 33.333 0.00 0.00 0.00 1.82
8505 8813 6.705863 AGTTTCAGCTCTCACTTCATTTTT 57.294 33.333 0.00 0.00 0.00 1.94
8506 8814 7.807977 AGTTTCAGCTCTCACTTCATTTTTA 57.192 32.000 0.00 0.00 0.00 1.52
8507 8815 8.401490 AGTTTCAGCTCTCACTTCATTTTTAT 57.599 30.769 0.00 0.00 0.00 1.40
8508 8816 8.854117 AGTTTCAGCTCTCACTTCATTTTTATT 58.146 29.630 0.00 0.00 0.00 1.40
8509 8817 9.122613 GTTTCAGCTCTCACTTCATTTTTATTC 57.877 33.333 0.00 0.00 0.00 1.75
8510 8818 8.627208 TTCAGCTCTCACTTCATTTTTATTCT 57.373 30.769 0.00 0.00 0.00 2.40
8511 8819 8.627208 TCAGCTCTCACTTCATTTTTATTCTT 57.373 30.769 0.00 0.00 0.00 2.52
8512 8820 9.071276 TCAGCTCTCACTTCATTTTTATTCTTT 57.929 29.630 0.00 0.00 0.00 2.52
8513 8821 9.688592 CAGCTCTCACTTCATTTTTATTCTTTT 57.311 29.630 0.00 0.00 0.00 2.27
8514 8822 9.688592 AGCTCTCACTTCATTTTTATTCTTTTG 57.311 29.630 0.00 0.00 0.00 2.44
8515 8823 9.683069 GCTCTCACTTCATTTTTATTCTTTTGA 57.317 29.630 0.00 0.00 0.00 2.69
8529 8837 4.998051 TTCTTTTGAATAGGGCACCTTCT 58.002 39.130 0.00 0.00 46.42 2.85
8530 8838 5.393866 TTCTTTTGAATAGGGCACCTTCTT 58.606 37.500 0.00 0.00 46.42 2.52
8531 8839 5.838521 TTCTTTTGAATAGGGCACCTTCTTT 59.161 36.000 0.00 0.00 46.42 2.52
8532 8840 6.326323 TTCTTTTGAATAGGGCACCTTCTTTT 59.674 34.615 0.00 0.00 46.42 2.27
8533 8841 7.147567 TTCTTTTGAATAGGGCACCTTCTTTTT 60.148 33.333 0.00 0.00 46.42 1.94
8541 8849 4.400529 GGCACCTTCTTTTTCCTGAAAA 57.599 40.909 1.04 1.04 38.40 2.29
8554 8862 9.599866 CTTTTTCCTGAAAAGTTTAACCTCATT 57.400 29.630 5.32 0.00 45.91 2.57
8555 8863 9.952030 TTTTTCCTGAAAAGTTTAACCTCATTT 57.048 25.926 5.32 0.00 40.83 2.32
8556 8864 9.952030 TTTTCCTGAAAAGTTTAACCTCATTTT 57.048 25.926 1.04 0.00 35.57 1.82
8557 8865 9.594478 TTTCCTGAAAAGTTTAACCTCATTTTC 57.406 29.630 11.07 11.07 39.28 2.29
8573 8881 6.437162 CCTCATTTTCTAGTTGGGGATCAAAA 59.563 38.462 0.00 0.00 37.08 2.44
8655 8963 5.966853 TTTTTGTTCTCCATTTCCCCTTT 57.033 34.783 0.00 0.00 0.00 3.11
8737 9045 9.965902 ATTTAGTCCTTGATTAAACAGAGTGAT 57.034 29.630 0.00 0.00 29.26 3.06
8739 9047 9.871238 TTAGTCCTTGATTAAACAGAGTGATAC 57.129 33.333 0.00 0.00 0.00 2.24
8740 9048 8.140112 AGTCCTTGATTAAACAGAGTGATACT 57.860 34.615 0.00 0.00 0.00 2.12
8742 9050 9.522804 GTCCTTGATTAAACAGAGTGATACTAG 57.477 37.037 0.00 0.00 0.00 2.57
8743 9051 8.198109 TCCTTGATTAAACAGAGTGATACTAGC 58.802 37.037 0.00 0.00 0.00 3.42
8744 9052 7.981789 CCTTGATTAAACAGAGTGATACTAGCA 59.018 37.037 0.00 0.00 0.00 3.49
8745 9053 8.703604 TTGATTAAACAGAGTGATACTAGCAC 57.296 34.615 0.00 0.00 36.53 4.40
8746 9054 7.836842 TGATTAAACAGAGTGATACTAGCACA 58.163 34.615 7.19 0.00 38.70 4.57
8747 9055 7.976175 TGATTAAACAGAGTGATACTAGCACAG 59.024 37.037 7.19 0.00 38.70 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 1.984570 TTCTCCTCTCCTGCCCGTG 60.985 63.158 0.00 0.00 0.00 4.94
63 64 1.985116 GTTCTCCTCTCCTGCCCGT 60.985 63.158 0.00 0.00 0.00 5.28
65 66 2.371259 GGGTTCTCCTCTCCTGCCC 61.371 68.421 0.00 0.00 0.00 5.36
67 68 2.726351 CCGGGTTCTCCTCTCCTGC 61.726 68.421 0.00 0.00 0.00 4.85
68 69 2.726351 GCCGGGTTCTCCTCTCCTG 61.726 68.421 2.18 0.00 0.00 3.86
69 70 2.364448 GCCGGGTTCTCCTCTCCT 60.364 66.667 2.18 0.00 0.00 3.69
70 71 3.839432 CGCCGGGTTCTCCTCTCC 61.839 72.222 2.18 0.00 0.00 3.71
71 72 4.516195 GCGCCGGGTTCTCCTCTC 62.516 72.222 2.18 0.00 0.00 3.20
73 74 4.516195 GAGCGCCGGGTTCTCCTC 62.516 72.222 2.29 0.00 0.00 3.71
75 76 3.682292 ATTGAGCGCCGGGTTCTCC 62.682 63.158 2.29 0.00 0.00 3.71
83 84 2.764314 CCCCTGAAATTGAGCGCCG 61.764 63.158 2.29 0.00 0.00 6.46
109 115 1.861542 TTTGCGTTTGGATGGGAGCG 61.862 55.000 0.00 0.00 0.00 5.03
132 138 2.764314 GCAATGTAGCAGTGGCCGG 61.764 63.158 0.00 0.00 42.56 6.13
151 157 2.210116 CTTGTCGCTTTACCACTGTGT 58.790 47.619 7.08 0.00 0.00 3.72
227 250 0.629058 TGGGGCTTTGGTAATCCCTC 59.371 55.000 0.00 0.00 39.28 4.30
229 252 0.040499 TGTGGGGCTTTGGTAATCCC 59.960 55.000 0.00 0.00 38.71 3.85
234 257 2.033448 CGCTGTGGGGCTTTGGTA 59.967 61.111 0.00 0.00 0.00 3.25
266 289 0.817229 GCTAGCCCGTAGTCCGTAGT 60.817 60.000 2.29 0.00 33.66 2.73
267 290 0.534652 AGCTAGCCCGTAGTCCGTAG 60.535 60.000 12.13 0.00 33.66 3.51
268 291 0.816825 CAGCTAGCCCGTAGTCCGTA 60.817 60.000 12.13 0.00 33.66 4.02
299 322 1.135315 GCAAATGCAGATCTTTGGCGA 60.135 47.619 11.40 0.00 41.59 5.54
348 376 1.336240 ACGTTAGTACCACGAACTGGC 60.336 52.381 19.21 0.00 45.32 4.85
350 378 2.030893 TGGACGTTAGTACCACGAACTG 60.031 50.000 19.21 5.48 40.20 3.16
389 417 2.503356 AGAATCTCGTGATCTTTGGCCT 59.497 45.455 3.32 0.00 31.51 5.19
390 418 2.911484 AGAATCTCGTGATCTTTGGCC 58.089 47.619 0.00 0.00 31.51 5.36
391 419 4.493220 CGAAAGAATCTCGTGATCTTTGGC 60.493 45.833 19.86 11.43 33.97 4.52
392 420 4.033358 CCGAAAGAATCTCGTGATCTTTGG 59.967 45.833 19.86 18.45 33.97 3.28
393 421 4.493220 GCCGAAAGAATCTCGTGATCTTTG 60.493 45.833 19.86 14.62 33.97 2.77
394 422 3.619038 GCCGAAAGAATCTCGTGATCTTT 59.381 43.478 17.15 17.15 35.18 2.52
424 452 2.978010 CCACCTCCACCGTTGCAC 60.978 66.667 0.00 0.00 0.00 4.57
425 453 3.484806 ACCACCTCCACCGTTGCA 61.485 61.111 0.00 0.00 0.00 4.08
426 454 2.978010 CACCACCTCCACCGTTGC 60.978 66.667 0.00 0.00 0.00 4.17
455 483 2.281484 GTTGCTTCCTGCCCGTGA 60.281 61.111 0.00 0.00 42.00 4.35
504 542 3.066198 CCCGGGTCGAGGAAAACT 58.934 61.111 14.18 0.00 0.00 2.66
537 575 2.096406 CAGCACGAAACCGATGCG 59.904 61.111 0.00 0.00 38.30 4.73
538 576 2.202349 GCAGCACGAAACCGATGC 60.202 61.111 0.00 0.00 35.71 3.91
539 577 2.034879 AGGCAGCACGAAACCGATG 61.035 57.895 0.00 0.00 0.00 3.84
540 578 2.034879 CAGGCAGCACGAAACCGAT 61.035 57.895 0.00 0.00 0.00 4.18
541 579 2.664851 CAGGCAGCACGAAACCGA 60.665 61.111 0.00 0.00 0.00 4.69
542 580 3.726517 CCAGGCAGCACGAAACCG 61.727 66.667 0.00 0.00 0.00 4.44
543 581 1.648467 GATCCAGGCAGCACGAAACC 61.648 60.000 0.00 0.00 0.00 3.27
544 582 0.955428 TGATCCAGGCAGCACGAAAC 60.955 55.000 0.00 0.00 0.00 2.78
545 583 0.955428 GTGATCCAGGCAGCACGAAA 60.955 55.000 0.00 0.00 0.00 3.46
546 584 1.375908 GTGATCCAGGCAGCACGAA 60.376 57.895 0.00 0.00 0.00 3.85
547 585 2.265739 GTGATCCAGGCAGCACGA 59.734 61.111 0.00 0.00 0.00 4.35
550 588 4.783621 GCGGTGATCCAGGCAGCA 62.784 66.667 0.00 0.00 33.59 4.41
557 595 2.435938 GAAAGCGGCGGTGATCCA 60.436 61.111 14.17 0.00 0.00 3.41
568 606 5.748592 ATTTATTAGCTAAAGGCGAAAGCG 58.251 37.500 10.85 0.00 43.79 4.68
575 613 5.917447 GCAGCAGAATTTATTAGCTAAAGGC 59.083 40.000 10.85 5.75 42.19 4.35
582 620 5.049129 CACCCTAGCAGCAGAATTTATTAGC 60.049 44.000 0.00 0.00 0.00 3.09
583 621 5.471456 CCACCCTAGCAGCAGAATTTATTAG 59.529 44.000 0.00 0.00 0.00 1.73
585 623 4.210331 CCACCCTAGCAGCAGAATTTATT 58.790 43.478 0.00 0.00 0.00 1.40
586 624 3.435601 CCCACCCTAGCAGCAGAATTTAT 60.436 47.826 0.00 0.00 0.00 1.40
587 625 2.092429 CCCACCCTAGCAGCAGAATTTA 60.092 50.000 0.00 0.00 0.00 1.40
593 631 3.397613 GAGCCCACCCTAGCAGCAG 62.398 68.421 0.00 0.00 0.00 4.24
595 633 3.086600 AGAGCCCACCCTAGCAGC 61.087 66.667 0.00 0.00 0.00 5.25
596 634 0.980231 AAGAGAGCCCACCCTAGCAG 60.980 60.000 0.00 0.00 0.00 4.24
598 636 0.621082 AAAAGAGAGCCCACCCTAGC 59.379 55.000 0.00 0.00 0.00 3.42
599 637 3.118223 CCTAAAAAGAGAGCCCACCCTAG 60.118 52.174 0.00 0.00 0.00 3.02
600 638 2.844348 CCTAAAAAGAGAGCCCACCCTA 59.156 50.000 0.00 0.00 0.00 3.53
601 639 1.636003 CCTAAAAAGAGAGCCCACCCT 59.364 52.381 0.00 0.00 0.00 4.34
602 640 1.341089 CCCTAAAAAGAGAGCCCACCC 60.341 57.143 0.00 0.00 0.00 4.61
603 641 1.354705 ACCCTAAAAAGAGAGCCCACC 59.645 52.381 0.00 0.00 0.00 4.61
604 642 2.437413 CACCCTAAAAAGAGAGCCCAC 58.563 52.381 0.00 0.00 0.00 4.61
605 643 1.271926 GCACCCTAAAAAGAGAGCCCA 60.272 52.381 0.00 0.00 0.00 5.36
609 650 3.040147 TCACGCACCCTAAAAAGAGAG 57.960 47.619 0.00 0.00 0.00 3.20
625 666 5.064707 CAGGGACAGGTAAATGTAAATCACG 59.935 44.000 0.00 0.00 32.25 4.35
630 671 4.331968 CAGCAGGGACAGGTAAATGTAAA 58.668 43.478 0.00 0.00 32.25 2.01
633 674 1.614317 GCAGCAGGGACAGGTAAATGT 60.614 52.381 0.00 0.00 35.68 2.71
634 675 1.098050 GCAGCAGGGACAGGTAAATG 58.902 55.000 0.00 0.00 0.00 2.32
635 676 0.995024 AGCAGCAGGGACAGGTAAAT 59.005 50.000 0.00 0.00 0.00 1.40
638 679 0.041238 AGTAGCAGCAGGGACAGGTA 59.959 55.000 0.00 0.00 0.00 3.08
639 680 0.838122 AAGTAGCAGCAGGGACAGGT 60.838 55.000 0.00 0.00 0.00 4.00
640 681 0.392193 CAAGTAGCAGCAGGGACAGG 60.392 60.000 0.00 0.00 0.00 4.00
641 682 0.322975 ACAAGTAGCAGCAGGGACAG 59.677 55.000 0.00 0.00 0.00 3.51
643 684 1.275291 TGTACAAGTAGCAGCAGGGAC 59.725 52.381 0.00 0.00 0.00 4.46
644 685 1.639722 TGTACAAGTAGCAGCAGGGA 58.360 50.000 0.00 0.00 0.00 4.20
676 749 3.057033 CACCACCAGTACCAGTACAGTAC 60.057 52.174 15.00 15.00 40.34 2.73
685 758 0.920438 ACCAAACACCACCAGTACCA 59.080 50.000 0.00 0.00 0.00 3.25
686 759 1.314730 CACCAAACACCACCAGTACC 58.685 55.000 0.00 0.00 0.00 3.34
692 765 3.128375 CAGGCACCAAACACCACC 58.872 61.111 0.00 0.00 0.00 4.61
711 784 4.168291 GAGGAGGAGGCGGCCAAG 62.168 72.222 23.09 0.00 0.00 3.61
719 792 2.767496 CTGCCCAGGAGGAGGAGG 60.767 72.222 0.00 0.00 38.24 4.30
720 793 2.040278 ACTGCCCAGGAGGAGGAG 59.960 66.667 0.00 0.00 38.24 3.69
721 794 2.284921 CACTGCCCAGGAGGAGGA 60.285 66.667 0.00 0.00 38.24 3.71
722 795 3.406200 CCACTGCCCAGGAGGAGG 61.406 72.222 0.00 0.00 38.24 4.30
723 796 4.106925 GCCACTGCCCAGGAGGAG 62.107 72.222 11.64 0.00 38.24 3.69
734 807 3.260100 AGGGGAAGGTGGCCACTG 61.260 66.667 33.91 0.00 37.88 3.66
735 808 2.936032 GAGGGGAAGGTGGCCACT 60.936 66.667 33.91 17.10 43.31 4.00
736 809 4.048470 GGAGGGGAAGGTGGCCAC 62.048 72.222 28.57 28.57 0.00 5.01
737 810 4.285790 AGGAGGGGAAGGTGGCCA 62.286 66.667 0.00 0.00 0.00 5.36
789 866 4.101077 AGGGAGGGAGCCAGGGAG 62.101 72.222 0.00 0.00 0.00 4.30
796 873 4.741239 TGTGGGGAGGGAGGGAGC 62.741 72.222 0.00 0.00 0.00 4.70
797 874 2.074948 CATGTGGGGAGGGAGGGAG 61.075 68.421 0.00 0.00 0.00 4.30
824 901 1.425428 GTAGCACGCCATGAGCAAC 59.575 57.895 0.00 0.00 44.04 4.17
903 980 4.717629 CGGTTCAGCAGTCGCGGA 62.718 66.667 6.13 0.00 45.49 5.54
909 986 2.743718 CCACCTCGGTTCAGCAGT 59.256 61.111 0.00 0.00 0.00 4.40
913 990 1.669115 CACAGCCACCTCGGTTCAG 60.669 63.158 0.00 0.00 36.97 3.02
914 991 1.480212 ATCACAGCCACCTCGGTTCA 61.480 55.000 0.00 0.00 36.97 3.18
915 992 0.741221 GATCACAGCCACCTCGGTTC 60.741 60.000 0.00 0.00 36.97 3.62
916 993 1.296715 GATCACAGCCACCTCGGTT 59.703 57.895 0.00 0.00 36.97 4.44
917 994 2.660064 GGATCACAGCCACCTCGGT 61.660 63.158 0.00 0.00 36.97 4.69
918 995 2.187946 GGATCACAGCCACCTCGG 59.812 66.667 0.00 0.00 38.11 4.63
921 998 1.542375 AAGGGGATCACAGCCACCT 60.542 57.895 0.00 0.00 0.00 4.00
924 1001 1.792757 AAGCAAGGGGATCACAGCCA 61.793 55.000 0.00 0.00 0.00 4.75
925 1002 1.000396 AAGCAAGGGGATCACAGCC 60.000 57.895 0.00 0.00 0.00 4.85
926 1003 0.034670 AGAAGCAAGGGGATCACAGC 60.035 55.000 0.00 0.00 0.00 4.40
927 1004 1.747709 CAGAAGCAAGGGGATCACAG 58.252 55.000 0.00 0.00 0.00 3.66
928 1005 0.322816 GCAGAAGCAAGGGGATCACA 60.323 55.000 0.00 0.00 41.58 3.58
929 1006 1.372087 CGCAGAAGCAAGGGGATCAC 61.372 60.000 0.00 0.00 42.27 3.06
932 1023 2.273449 CCGCAGAAGCAAGGGGAT 59.727 61.111 0.00 0.00 42.27 3.85
936 1027 4.112341 GCTGCCGCAGAAGCAAGG 62.112 66.667 24.80 0.00 40.35 3.61
937 1028 3.036783 GAGCTGCCGCAGAAGCAAG 62.037 63.158 24.80 0.00 40.35 4.01
938 1029 3.052082 GAGCTGCCGCAGAAGCAA 61.052 61.111 24.80 0.00 40.35 3.91
957 1048 3.198489 GCGCACAAGCTCCTAGCC 61.198 66.667 0.30 0.00 43.77 3.93
983 1074 3.417275 ATCTCGCCGTCGCCTGAAG 62.417 63.158 0.00 0.00 35.26 3.02
984 1075 3.449227 ATCTCGCCGTCGCCTGAA 61.449 61.111 0.00 0.00 35.26 3.02
985 1076 4.193334 CATCTCGCCGTCGCCTGA 62.193 66.667 0.00 0.00 35.26 3.86
1041 1132 1.630369 TCACCTGTGGATCCAAGAAGG 59.370 52.381 26.86 26.86 39.47 3.46
1063 1154 1.454276 CTTGCGCAATGCTGAACTTTG 59.546 47.619 25.26 3.00 46.63 2.77
1066 1157 1.080974 GCTTGCGCAATGCTGAACT 60.081 52.632 25.26 0.00 46.63 3.01
1070 1161 2.150218 CGAAGCTTGCGCAATGCTG 61.150 57.895 32.73 22.94 46.63 4.41
1083 1175 1.066502 AGAGGAGAAGAAAGCCGAAGC 60.067 52.381 0.00 0.00 40.32 3.86
1084 1176 3.326836 AAGAGGAGAAGAAAGCCGAAG 57.673 47.619 0.00 0.00 0.00 3.79
1088 1180 2.092861 GGGGTAAGAGGAGAAGAAAGCC 60.093 54.545 0.00 0.00 0.00 4.35
1092 1184 2.113777 ACCTGGGGTAAGAGGAGAAGAA 59.886 50.000 0.00 0.00 32.11 2.52
1096 1188 1.273666 GGAACCTGGGGTAAGAGGAGA 60.274 57.143 0.00 0.00 33.12 3.71
1105 1197 4.047125 CGCCATGGAACCTGGGGT 62.047 66.667 18.40 0.00 40.74 4.95
1161 1255 2.831366 CGCATTGCCCAGCAGCTAG 61.831 63.158 2.41 0.00 40.61 3.42
1162 1256 2.818291 TTCGCATTGCCCAGCAGCTA 62.818 55.000 2.41 0.00 40.61 3.32
1169 1263 1.215912 CAAGCATTCGCATTGCCCA 59.784 52.632 2.41 0.00 41.06 5.36
1172 1266 0.368907 CAAGCAAGCATTCGCATTGC 59.631 50.000 0.00 0.00 45.08 3.56
1183 1277 3.863142 ATCATGGAGAAACAAGCAAGC 57.137 42.857 0.00 0.00 0.00 4.01
1188 1282 6.183360 GGGTGGAAATATCATGGAGAAACAAG 60.183 42.308 0.00 0.00 0.00 3.16
1189 1283 5.656416 GGGTGGAAATATCATGGAGAAACAA 59.344 40.000 0.00 0.00 0.00 2.83
1203 1297 1.012395 GGGGGAAAGGGGTGGAAATA 58.988 55.000 0.00 0.00 0.00 1.40
1219 1313 0.611896 AAATTGCTCAACCGAGGGGG 60.612 55.000 0.00 0.00 39.88 5.40
1220 1314 0.527565 CAAATTGCTCAACCGAGGGG 59.472 55.000 0.00 0.00 39.88 4.79
1221 1315 1.470098 CTCAAATTGCTCAACCGAGGG 59.530 52.381 0.00 0.00 39.88 4.30
1253 1350 7.475771 TTTGGAAGAAAAATTGTTGAATCCG 57.524 32.000 0.00 0.00 0.00 4.18
1361 1458 1.465354 GAGCACATGCGCTTCAGAAAG 60.465 52.381 10.05 0.00 44.01 2.62
1396 1511 2.272146 GCCGCCCCTCTTGATGAA 59.728 61.111 0.00 0.00 0.00 2.57
1438 1554 2.626780 GCCAAAGACAGGGGAACGC 61.627 63.158 0.00 0.00 43.76 4.84
1542 1658 6.835914 TGCGGCCAAAAATTATTAATTGTTG 58.164 32.000 19.05 19.05 42.94 3.33
1646 1772 5.009410 AGGCAAATCTTGAGTGTCTTTTCAG 59.991 40.000 0.00 0.00 0.00 3.02
1708 1838 9.458727 ACTACTAACTGTGTAATGACTAAGCTA 57.541 33.333 0.00 0.00 0.00 3.32
1811 1945 2.435410 GGCGAACTACCAACCCCG 60.435 66.667 0.00 0.00 0.00 5.73
1813 1947 0.672711 GACAGGCGAACTACCAACCC 60.673 60.000 0.00 0.00 0.00 4.11
1886 2020 3.750828 GCTACCTGCTGGAAGAGTC 57.249 57.895 17.64 3.82 38.95 3.36
1928 2062 1.669999 GGGCCTGCACATGAATGTCC 61.670 60.000 0.84 0.00 39.39 4.02
1963 2098 0.251341 AAGTAGGGGGTGCTGCAAAG 60.251 55.000 2.77 0.00 0.00 2.77
1964 2099 0.251165 GAAGTAGGGGGTGCTGCAAA 60.251 55.000 2.77 0.00 0.00 3.68
2105 2252 7.772292 ACATAAGATTCAGTTAGTGATGCACAT 59.228 33.333 0.00 0.00 36.74 3.21
2138 2285 4.514577 ATCGGAGGAGGCGCGTTG 62.515 66.667 8.43 0.00 0.00 4.10
2141 2288 4.207281 TCAATCGGAGGAGGCGCG 62.207 66.667 0.00 0.00 0.00 6.86
2558 2777 1.903183 GGAGCCTGAGTTGAAGGTAGT 59.097 52.381 0.00 0.00 37.13 2.73
2559 2778 2.183679 AGGAGCCTGAGTTGAAGGTAG 58.816 52.381 0.00 0.00 37.13 3.18
2560 2779 2.327325 AGGAGCCTGAGTTGAAGGTA 57.673 50.000 0.00 0.00 37.13 3.08
2561 2780 1.903183 GTAGGAGCCTGAGTTGAAGGT 59.097 52.381 0.00 0.00 37.13 3.50
2562 2781 2.167487 GAGTAGGAGCCTGAGTTGAAGG 59.833 54.545 0.00 0.00 37.91 3.46
2563 2782 2.167487 GGAGTAGGAGCCTGAGTTGAAG 59.833 54.545 0.00 0.00 0.00 3.02
2564 2783 2.180276 GGAGTAGGAGCCTGAGTTGAA 58.820 52.381 0.00 0.00 0.00 2.69
2565 2784 1.077169 TGGAGTAGGAGCCTGAGTTGA 59.923 52.381 0.00 0.00 0.00 3.18
2566 2785 1.561643 TGGAGTAGGAGCCTGAGTTG 58.438 55.000 0.00 0.00 0.00 3.16
2567 2786 2.023501 AGATGGAGTAGGAGCCTGAGTT 60.024 50.000 0.00 0.00 0.00 3.01
2568 2787 1.573376 AGATGGAGTAGGAGCCTGAGT 59.427 52.381 0.00 0.00 0.00 3.41
2569 2788 1.962807 CAGATGGAGTAGGAGCCTGAG 59.037 57.143 0.00 0.00 0.00 3.35
2570 2789 1.289231 ACAGATGGAGTAGGAGCCTGA 59.711 52.381 0.00 0.00 0.00 3.86
2571 2790 1.411977 CACAGATGGAGTAGGAGCCTG 59.588 57.143 0.00 0.00 0.00 4.85
2572 2791 1.786937 CACAGATGGAGTAGGAGCCT 58.213 55.000 0.00 0.00 0.00 4.58
2592 2811 0.453390 GGCACATTAGGCTTCACAGC 59.547 55.000 0.00 0.00 46.52 4.40
2593 2812 1.470098 GTGGCACATTAGGCTTCACAG 59.530 52.381 13.86 0.00 44.52 3.66
2594 2813 1.073763 AGTGGCACATTAGGCTTCACA 59.926 47.619 21.41 0.00 44.52 3.58
2595 2814 1.826385 AGTGGCACATTAGGCTTCAC 58.174 50.000 21.41 0.00 44.52 3.18
2596 2815 3.266510 CTAGTGGCACATTAGGCTTCA 57.733 47.619 21.41 0.00 43.63 3.02
2618 2837 0.615850 AAGGTAGTGAAGCAGGAGGC 59.384 55.000 0.00 0.00 45.30 4.70
2619 2838 1.902508 TGAAGGTAGTGAAGCAGGAGG 59.097 52.381 0.00 0.00 0.00 4.30
2620 2839 2.564947 ACTGAAGGTAGTGAAGCAGGAG 59.435 50.000 0.00 0.00 0.00 3.69
2621 2840 2.609747 ACTGAAGGTAGTGAAGCAGGA 58.390 47.619 0.00 0.00 0.00 3.86
2622 2841 3.244215 TGAACTGAAGGTAGTGAAGCAGG 60.244 47.826 0.00 0.00 0.00 4.85
2623 2842 3.993081 CTGAACTGAAGGTAGTGAAGCAG 59.007 47.826 0.00 0.00 0.00 4.24
2624 2843 3.244215 CCTGAACTGAAGGTAGTGAAGCA 60.244 47.826 0.00 0.00 0.00 3.91
2625 2844 3.330267 CCTGAACTGAAGGTAGTGAAGC 58.670 50.000 0.00 0.00 0.00 3.86
2626 2845 3.007398 AGCCTGAACTGAAGGTAGTGAAG 59.993 47.826 0.00 0.00 37.13 3.02
2627 2846 2.972713 AGCCTGAACTGAAGGTAGTGAA 59.027 45.455 0.00 0.00 37.13 3.18
2628 2847 2.563179 GAGCCTGAACTGAAGGTAGTGA 59.437 50.000 0.00 0.00 37.13 3.41
2629 2848 2.354203 GGAGCCTGAACTGAAGGTAGTG 60.354 54.545 0.00 0.00 37.13 2.74
2794 3013 9.170734 CAGAATATATACCTGATCCAATTGGTG 57.829 37.037 23.76 12.24 36.34 4.17
2863 3082 5.176590 TGCACGATTTTTATGAACTTTTGGC 59.823 36.000 0.00 0.00 0.00 4.52
2882 3101 3.016736 AGGGAAGGAACATATTTGCACG 58.983 45.455 0.00 0.00 0.00 5.34
2994 3213 5.529060 CCTATGGAAGTGATTTACCTGAAGC 59.471 44.000 0.00 0.00 0.00 3.86
3016 3235 4.939255 ACCTGTCAAATTTGATCCATCCT 58.061 39.130 23.05 1.30 39.73 3.24
3021 3240 4.255833 TGCAACCTGTCAAATTTGATCC 57.744 40.909 23.05 12.28 39.73 3.36
3054 3273 7.374272 AGGAACTACTAAGAAGAACGGTAAAC 58.626 38.462 0.00 0.00 36.02 2.01
3083 3302 5.599732 TGAAATTGGAGGTTTCACATGTTG 58.400 37.500 0.00 0.00 39.81 3.33
3191 3412 6.029346 AGAACATTGGCAAAGAAATACCAG 57.971 37.500 9.74 0.00 32.79 4.00
3194 3415 8.986477 ATGTAAGAACATTGGCAAAGAAATAC 57.014 30.769 9.74 7.34 44.07 1.89
3327 3548 2.986050 ACTAGGTTCCTTTGGTGGAGA 58.014 47.619 0.00 0.00 37.43 3.71
3476 3697 1.352622 TGTTGTGGGGCAGAGGACTT 61.353 55.000 0.00 0.00 0.00 3.01
3585 3806 0.316841 GTCGGAGGATGAGATCTGCC 59.683 60.000 0.00 0.00 0.00 4.85
3623 3844 3.897505 GGTAAGATGGGGAAAATGATGGG 59.102 47.826 0.00 0.00 0.00 4.00
3749 3970 2.201436 GAGGTTGAGCTCGCGAGACA 62.201 60.000 38.74 30.66 35.39 3.41
4004 4252 4.634883 GGCAAAGTAAGAAGGCTAAGTACC 59.365 45.833 0.00 0.00 0.00 3.34
4020 4271 3.634910 ACGAATACCAAACAAGGCAAAGT 59.365 39.130 0.00 0.00 0.00 2.66
4070 4321 4.697352 CGAGGTCCTGAAAATGATTGAAGT 59.303 41.667 0.00 0.00 0.00 3.01
4076 4327 3.703001 ACACGAGGTCCTGAAAATGAT 57.297 42.857 0.00 0.00 0.00 2.45
4133 4384 0.615331 GAGTTGATGGTGCTCTGGGA 59.385 55.000 0.00 0.00 0.00 4.37
4138 4389 2.706339 AGGATGAGTTGATGGTGCTC 57.294 50.000 0.00 0.00 0.00 4.26
4219 4470 6.978080 GCATGTAAAGTTTGAAAGGACAAAGA 59.022 34.615 0.00 0.00 39.83 2.52
4243 4494 2.954318 ACCCAATATGCACAGATTCAGC 59.046 45.455 0.00 0.00 0.00 4.26
4247 4498 7.517320 TCAGTATTACCCAATATGCACAGATT 58.483 34.615 0.00 0.00 0.00 2.40
4314 4565 1.127567 AGGCTCTGGGCACACTAACA 61.128 55.000 0.21 0.00 44.01 2.41
4696 4947 7.123547 ACCAAATAAGAAAGTCCAAGAACACAA 59.876 33.333 0.00 0.00 0.00 3.33
4981 5232 4.343814 TCCCATTCACTTTTCTTTTGGGTC 59.656 41.667 5.09 0.00 42.41 4.46
5293 5544 4.822026 AGATATTTGCCTATAGGACACGC 58.178 43.478 23.61 6.97 37.39 5.34
5294 5545 5.047306 TGGAGATATTTGCCTATAGGACACG 60.047 44.000 23.61 0.00 37.39 4.49
5314 5565 1.284785 TCCCAAAGGGCATTACTGGAG 59.715 52.381 4.26 0.00 43.94 3.86
5424 5677 1.472480 CTATGGGGTGCAGTTTTTCCG 59.528 52.381 0.00 0.00 0.00 4.30
5425 5678 2.525368 ACTATGGGGTGCAGTTTTTCC 58.475 47.619 0.00 0.00 0.00 3.13
5598 5853 1.768870 CCAAGGTCGGGGATAATGAGT 59.231 52.381 0.00 0.00 0.00 3.41
5599 5854 1.543429 GCCAAGGTCGGGGATAATGAG 60.543 57.143 0.00 0.00 0.00 2.90
5612 5867 0.706433 ATGAAGGATGGTGCCAAGGT 59.294 50.000 0.00 0.00 0.00 3.50
5616 5871 2.601240 TTTCATGAAGGATGGTGCCA 57.399 45.000 8.41 0.00 32.26 4.92
5662 5917 9.249053 TGGCTAATTTAATCCTCACAACATTAA 57.751 29.630 0.00 0.00 0.00 1.40
5671 5926 4.079787 AGGCAGTGGCTAATTTAATCCTCA 60.080 41.667 19.12 0.00 40.87 3.86
5704 5959 4.822026 AGTAAACACTTGAGAATAGCGCT 58.178 39.130 17.26 17.26 0.00 5.92
5719 5974 8.815565 TTTAGCAATGATCCCATAAGTAAACA 57.184 30.769 0.00 0.00 31.59 2.83
5734 5989 7.561021 TGCTCCGTTATAAATTTAGCAATGA 57.439 32.000 7.01 0.00 35.70 2.57
5745 6000 5.359860 TGAGAGACAGATGCTCCGTTATAAA 59.640 40.000 0.00 0.00 32.82 1.40
5755 6010 1.477700 GTGAGCTGAGAGACAGATGCT 59.522 52.381 0.00 0.00 45.71 3.79
5793 6048 8.542497 AATCAACTTTCAAAATCATCCACATG 57.458 30.769 0.00 0.00 0.00 3.21
5795 6050 7.954835 AGAATCAACTTTCAAAATCATCCACA 58.045 30.769 0.00 0.00 0.00 4.17
5796 6051 8.822652 AAGAATCAACTTTCAAAATCATCCAC 57.177 30.769 0.00 0.00 0.00 4.02
5886 6141 6.729187 ACTTTGTGTCTAGAAATGTTTGAGC 58.271 36.000 0.00 0.00 0.00 4.26
5887 6142 7.166473 GCAACTTTGTGTCTAGAAATGTTTGAG 59.834 37.037 0.00 0.00 0.00 3.02
5889 6144 6.751425 TGCAACTTTGTGTCTAGAAATGTTTG 59.249 34.615 0.00 0.00 0.00 2.93
5932 6187 3.866883 TGCACATCATCAAGTCTACGA 57.133 42.857 0.00 0.00 0.00 3.43
6097 6352 0.395311 CAATGATGCAGAGGCTGGGT 60.395 55.000 0.00 0.00 41.91 4.51
6146 6402 6.322491 GGTTAGCATTTGAAATGTGGACTAC 58.678 40.000 18.12 8.71 0.00 2.73
6250 6506 5.070313 ACTTGTTGCTGGTAAAAATGGACAT 59.930 36.000 0.00 0.00 0.00 3.06
6387 6643 1.538687 AATGTCTTTGCCTGCCCTGC 61.539 55.000 0.00 0.00 0.00 4.85
6521 6777 8.579863 CCATCAAATCTTTTCAGAACCTTTACT 58.420 33.333 0.00 0.00 30.76 2.24
6623 6879 0.760567 TCTCCTCCACGCATATGCCT 60.761 55.000 21.77 7.79 37.91 4.75
6635 6891 0.741221 GACACCGTGCATTCTCCTCC 60.741 60.000 0.00 0.00 0.00 4.30
6644 6900 2.104170 TCATATACCAGACACCGTGCA 58.896 47.619 0.00 0.00 0.00 4.57
6647 6903 6.726490 ATAAGTTCATATACCAGACACCGT 57.274 37.500 0.00 0.00 0.00 4.83
6725 6981 4.895889 ACACTTCTATATGCTGGCAGAGTA 59.104 41.667 20.86 10.19 0.00 2.59
6730 6986 4.191544 GTTGACACTTCTATATGCTGGCA 58.808 43.478 0.00 0.00 0.00 4.92
6786 7045 1.515954 CGGTCGGCTCCTACAATGT 59.484 57.895 0.00 0.00 0.00 2.71
6802 7061 0.596083 CAAGTGGAGCTATCTCGCGG 60.596 60.000 6.13 0.00 40.26 6.46
7021 7280 0.392461 ACCCGAATGTTCCCATGACG 60.392 55.000 0.00 0.00 34.05 4.35
7508 7767 3.792401 CTTCCATGCCAGTTACATCGTA 58.208 45.455 0.00 0.00 0.00 3.43
7561 7820 1.540363 GGAGTGAAGACAGGCGTTGAA 60.540 52.381 0.00 0.00 0.00 2.69
7567 7826 0.673022 CAGCTGGAGTGAAGACAGGC 60.673 60.000 5.57 0.00 32.98 4.85
7587 7846 1.270625 TGCGGAAAGAACCTGAATCGT 60.271 47.619 0.00 0.00 0.00 3.73
7588 7847 1.438651 TGCGGAAAGAACCTGAATCG 58.561 50.000 0.00 0.00 0.00 3.34
7702 7961 0.740868 TCTCAAAATCTGGCGAGGCG 60.741 55.000 0.00 0.00 0.00 5.52
7754 8014 2.038295 ACTGGAAGCTGGACAGAAGAAG 59.962 50.000 16.61 0.00 37.60 2.85
7755 8015 2.037772 GACTGGAAGCTGGACAGAAGAA 59.962 50.000 16.61 0.00 37.60 2.52
7757 8017 1.622811 AGACTGGAAGCTGGACAGAAG 59.377 52.381 16.61 0.00 37.60 2.85
7785 8048 9.421806 CTCTTTATGTCCAGTCATCTGAATATC 57.578 37.037 0.00 0.00 43.76 1.63
7808 8071 5.990668 ACACAAACTAGGTCTTCAAACTCT 58.009 37.500 0.00 0.00 0.00 3.24
7871 8134 6.961360 TGTACAGGTACTCTGATAATCCTG 57.039 41.667 15.59 7.36 46.18 3.86
7872 8135 7.355101 TCTTGTACAGGTACTCTGATAATCCT 58.645 38.462 15.59 0.00 46.18 3.24
7877 8140 6.263392 GCAGATCTTGTACAGGTACTCTGATA 59.737 42.308 24.59 1.09 46.18 2.15
7879 8142 4.399618 GCAGATCTTGTACAGGTACTCTGA 59.600 45.833 24.59 12.89 46.18 3.27
7887 8150 4.669206 ATCTGAGCAGATCTTGTACAGG 57.331 45.455 7.15 0.00 44.37 4.00
7891 8188 4.080695 AGCCAAATCTGAGCAGATCTTGTA 60.081 41.667 12.95 0.00 46.75 2.41
7893 8190 3.280295 AGCCAAATCTGAGCAGATCTTG 58.720 45.455 12.95 16.30 46.75 3.02
7909 8206 6.418057 AAATCAAACCAAATGTAGAGCCAA 57.582 33.333 0.00 0.00 0.00 4.52
7913 8210 7.027161 CCCGTTAAATCAAACCAAATGTAGAG 58.973 38.462 0.00 0.00 0.00 2.43
7917 8214 5.538849 ACCCGTTAAATCAAACCAAATGT 57.461 34.783 0.00 0.00 0.00 2.71
7919 8216 6.220201 CAGAACCCGTTAAATCAAACCAAAT 58.780 36.000 0.00 0.00 0.00 2.32
7920 8217 5.593010 CAGAACCCGTTAAATCAAACCAAA 58.407 37.500 0.00 0.00 0.00 3.28
7921 8218 4.500035 GCAGAACCCGTTAAATCAAACCAA 60.500 41.667 0.00 0.00 0.00 3.67
7922 8219 3.004944 GCAGAACCCGTTAAATCAAACCA 59.995 43.478 0.00 0.00 0.00 3.67
7923 8220 3.571571 GCAGAACCCGTTAAATCAAACC 58.428 45.455 0.00 0.00 0.00 3.27
7924 8221 3.571571 GGCAGAACCCGTTAAATCAAAC 58.428 45.455 0.00 0.00 0.00 2.93
7925 8222 2.226912 CGGCAGAACCCGTTAAATCAAA 59.773 45.455 0.00 0.00 43.24 2.69
7926 8223 1.807742 CGGCAGAACCCGTTAAATCAA 59.192 47.619 0.00 0.00 43.24 2.57
7927 8224 1.444836 CGGCAGAACCCGTTAAATCA 58.555 50.000 0.00 0.00 43.24 2.57
8072 8371 8.701895 AGTCCGAAACTCCAAATCTATACATTA 58.298 33.333 0.00 0.00 30.02 1.90
8086 8385 3.119955 GGCAAAATGTAGTCCGAAACTCC 60.120 47.826 0.00 0.00 39.55 3.85
8093 8394 2.746904 TCACATGGCAAAATGTAGTCCG 59.253 45.455 0.00 0.00 38.75 4.79
8105 8408 1.820519 GGAGCTGAAATTCACATGGCA 59.179 47.619 7.51 0.00 0.00 4.92
8124 8427 1.939974 ATGCTAGTGTACGTGCATGG 58.060 50.000 10.21 4.49 43.41 3.66
8158 8461 4.898320 TCACAACACTGACAAGCTATCAT 58.102 39.130 1.27 0.00 0.00 2.45
8168 8471 6.672147 AGAAGCAAATAATCACAACACTGAC 58.328 36.000 0.00 0.00 0.00 3.51
8190 8493 7.757624 GGTAAAACAAGTTGTGAATTGTGAAGA 59.242 33.333 9.79 0.00 39.50 2.87
8192 8495 7.378966 TGGTAAAACAAGTTGTGAATTGTGAA 58.621 30.769 9.79 0.00 39.50 3.18
8193 8496 6.925211 TGGTAAAACAAGTTGTGAATTGTGA 58.075 32.000 9.79 0.00 39.50 3.58
8194 8497 6.811170 ACTGGTAAAACAAGTTGTGAATTGTG 59.189 34.615 9.79 1.67 39.50 3.33
8195 8498 6.811170 CACTGGTAAAACAAGTTGTGAATTGT 59.189 34.615 9.79 0.91 41.28 2.71
8196 8499 7.032580 TCACTGGTAAAACAAGTTGTGAATTG 58.967 34.615 9.79 0.30 31.49 2.32
8197 8500 7.164230 TCACTGGTAAAACAAGTTGTGAATT 57.836 32.000 9.79 8.07 31.49 2.17
8198 8501 6.767524 TCACTGGTAAAACAAGTTGTGAAT 57.232 33.333 9.79 1.57 31.49 2.57
8240 8543 4.400884 ACCTGACAGAGTTAGACTGCATAG 59.599 45.833 3.32 0.00 38.74 2.23
8296 8599 8.450578 TCCACAGCAAAAATTACCATATAGAG 57.549 34.615 0.00 0.00 0.00 2.43
8297 8600 8.682710 GTTCCACAGCAAAAATTACCATATAGA 58.317 33.333 0.00 0.00 0.00 1.98
8298 8601 8.686334 AGTTCCACAGCAAAAATTACCATATAG 58.314 33.333 0.00 0.00 0.00 1.31
8318 8622 4.973168 ACATCAGCTCTTAACAAGTTCCA 58.027 39.130 0.00 0.00 0.00 3.53
8333 8637 9.674824 CAAGATTCCTAATCAAAATACATCAGC 57.325 33.333 2.74 0.00 40.42 4.26
8348 8652 4.842531 TGCACAGATCCAAGATTCCTAA 57.157 40.909 0.00 0.00 0.00 2.69
8386 8690 1.073923 GAAGGGTGTGTCCTGGAATGT 59.926 52.381 0.00 0.00 37.20 2.71
8392 8696 2.430465 CATTCTGAAGGGTGTGTCCTG 58.570 52.381 0.00 0.00 37.20 3.86
8395 8699 1.896220 TGCATTCTGAAGGGTGTGTC 58.104 50.000 4.09 0.00 0.00 3.67
8398 8702 2.040813 ACTCATGCATTCTGAAGGGTGT 59.959 45.455 0.00 0.00 0.00 4.16
8412 8719 2.158900 TGCCCTTAGAGCTAACTCATGC 60.159 50.000 0.00 0.00 46.09 4.06
8435 8743 9.369904 TGAAGTGAAATTTTTCAGGAAAAGAAG 57.630 29.630 5.99 0.00 46.80 2.85
8451 8759 7.010160 TCCCCAACTAGAAAATGAAGTGAAAT 58.990 34.615 0.00 0.00 0.00 2.17
8466 8774 5.335976 GCTGAAACTTTTGATCCCCAACTAG 60.336 44.000 0.00 0.00 33.85 2.57
8467 8775 4.522789 GCTGAAACTTTTGATCCCCAACTA 59.477 41.667 0.00 0.00 33.85 2.24
8468 8776 3.321968 GCTGAAACTTTTGATCCCCAACT 59.678 43.478 0.00 0.00 33.85 3.16
8469 8777 3.321968 AGCTGAAACTTTTGATCCCCAAC 59.678 43.478 0.00 0.00 33.85 3.77
8470 8778 3.573967 GAGCTGAAACTTTTGATCCCCAA 59.426 43.478 0.00 0.00 0.00 4.12
8471 8779 3.157087 GAGCTGAAACTTTTGATCCCCA 58.843 45.455 0.00 0.00 0.00 4.96
8472 8780 3.425659 AGAGCTGAAACTTTTGATCCCC 58.574 45.455 0.00 0.00 0.00 4.81
8473 8781 4.074970 TGAGAGCTGAAACTTTTGATCCC 58.925 43.478 0.00 0.00 0.00 3.85
8474 8782 4.759183 AGTGAGAGCTGAAACTTTTGATCC 59.241 41.667 0.00 0.00 0.00 3.36
8475 8783 5.938438 AGTGAGAGCTGAAACTTTTGATC 57.062 39.130 0.00 0.00 0.00 2.92
8476 8784 5.824624 TGAAGTGAGAGCTGAAACTTTTGAT 59.175 36.000 0.00 0.00 33.14 2.57
8477 8785 5.185454 TGAAGTGAGAGCTGAAACTTTTGA 58.815 37.500 0.00 0.00 33.14 2.69
8478 8786 5.490139 TGAAGTGAGAGCTGAAACTTTTG 57.510 39.130 0.00 0.00 33.14 2.44
8479 8787 6.705863 AATGAAGTGAGAGCTGAAACTTTT 57.294 33.333 0.00 0.00 33.14 2.27
8480 8788 6.705863 AAATGAAGTGAGAGCTGAAACTTT 57.294 33.333 0.00 0.00 33.14 2.66
8481 8789 6.705863 AAAATGAAGTGAGAGCTGAAACTT 57.294 33.333 0.00 0.00 35.62 2.66
8482 8790 6.705863 AAAAATGAAGTGAGAGCTGAAACT 57.294 33.333 0.00 0.00 0.00 2.66
8483 8791 9.122613 GAATAAAAATGAAGTGAGAGCTGAAAC 57.877 33.333 0.00 0.00 0.00 2.78
8484 8792 9.071276 AGAATAAAAATGAAGTGAGAGCTGAAA 57.929 29.630 0.00 0.00 0.00 2.69
8485 8793 8.627208 AGAATAAAAATGAAGTGAGAGCTGAA 57.373 30.769 0.00 0.00 0.00 3.02
8486 8794 8.627208 AAGAATAAAAATGAAGTGAGAGCTGA 57.373 30.769 0.00 0.00 0.00 4.26
8487 8795 9.688592 AAAAGAATAAAAATGAAGTGAGAGCTG 57.311 29.630 0.00 0.00 0.00 4.24
8488 8796 9.688592 CAAAAGAATAAAAATGAAGTGAGAGCT 57.311 29.630 0.00 0.00 0.00 4.09
8489 8797 9.683069 TCAAAAGAATAAAAATGAAGTGAGAGC 57.317 29.630 0.00 0.00 0.00 4.09
8498 8806 9.651913 GTGCCCTATTCAAAAGAATAAAAATGA 57.348 29.630 0.00 0.00 0.00 2.57
8499 8807 8.882736 GGTGCCCTATTCAAAAGAATAAAAATG 58.117 33.333 0.00 0.00 0.00 2.32
8500 8808 8.825774 AGGTGCCCTATTCAAAAGAATAAAAAT 58.174 29.630 0.00 0.00 28.47 1.82
8501 8809 8.201242 AGGTGCCCTATTCAAAAGAATAAAAA 57.799 30.769 0.00 0.00 28.47 1.94
8502 8810 7.790782 AGGTGCCCTATTCAAAAGAATAAAA 57.209 32.000 0.00 0.00 28.47 1.52
8503 8811 7.673926 AGAAGGTGCCCTATTCAAAAGAATAAA 59.326 33.333 0.00 0.00 31.13 1.40
8504 8812 7.182060 AGAAGGTGCCCTATTCAAAAGAATAA 58.818 34.615 0.00 0.00 31.13 1.40
8505 8813 6.731467 AGAAGGTGCCCTATTCAAAAGAATA 58.269 36.000 0.00 0.00 31.13 1.75
8506 8814 5.583932 AGAAGGTGCCCTATTCAAAAGAAT 58.416 37.500 0.00 0.00 31.13 2.40
8507 8815 4.998051 AGAAGGTGCCCTATTCAAAAGAA 58.002 39.130 0.00 0.00 31.13 2.52
8508 8816 4.657814 AGAAGGTGCCCTATTCAAAAGA 57.342 40.909 0.00 0.00 31.13 2.52
8509 8817 5.728637 AAAGAAGGTGCCCTATTCAAAAG 57.271 39.130 0.00 0.00 31.13 2.27
8510 8818 6.463755 GGAAAAAGAAGGTGCCCTATTCAAAA 60.464 38.462 0.00 0.00 31.13 2.44
8511 8819 5.011635 GGAAAAAGAAGGTGCCCTATTCAAA 59.988 40.000 0.00 0.00 31.13 2.69
8512 8820 4.526650 GGAAAAAGAAGGTGCCCTATTCAA 59.473 41.667 0.00 0.00 31.13 2.69
8513 8821 4.086457 GGAAAAAGAAGGTGCCCTATTCA 58.914 43.478 0.00 0.00 31.13 2.57
8514 8822 4.158579 CAGGAAAAAGAAGGTGCCCTATTC 59.841 45.833 0.00 0.00 31.13 1.75
8515 8823 4.089361 CAGGAAAAAGAAGGTGCCCTATT 58.911 43.478 0.00 0.00 31.13 1.73
8516 8824 3.333680 TCAGGAAAAAGAAGGTGCCCTAT 59.666 43.478 0.00 0.00 31.13 2.57
8517 8825 2.714250 TCAGGAAAAAGAAGGTGCCCTA 59.286 45.455 0.00 0.00 31.13 3.53
8518 8826 1.499007 TCAGGAAAAAGAAGGTGCCCT 59.501 47.619 0.00 0.00 33.87 5.19
8519 8827 1.995376 TCAGGAAAAAGAAGGTGCCC 58.005 50.000 0.00 0.00 0.00 5.36
8520 8828 4.400529 TTTTCAGGAAAAAGAAGGTGCC 57.599 40.909 4.79 0.00 37.35 5.01
8529 8837 9.952030 AAATGAGGTTAAACTTTTCAGGAAAAA 57.048 25.926 8.39 0.00 39.49 1.94
8530 8838 9.952030 AAAATGAGGTTAAACTTTTCAGGAAAA 57.048 25.926 6.97 6.97 37.90 2.29
8531 8839 9.594478 GAAAATGAGGTTAAACTTTTCAGGAAA 57.406 29.630 10.10 0.00 36.38 3.13
8532 8840 8.977412 AGAAAATGAGGTTAAACTTTTCAGGAA 58.023 29.630 15.26 0.00 37.95 3.36
8533 8841 8.533569 AGAAAATGAGGTTAAACTTTTCAGGA 57.466 30.769 15.26 0.00 37.95 3.86
8534 8842 9.899226 CTAGAAAATGAGGTTAAACTTTTCAGG 57.101 33.333 15.26 6.51 37.95 3.86
8539 8847 8.638873 CCCAACTAGAAAATGAGGTTAAACTTT 58.361 33.333 0.00 0.00 0.00 2.66
8540 8848 7.232737 CCCCAACTAGAAAATGAGGTTAAACTT 59.767 37.037 0.00 0.00 0.00 2.66
8541 8849 6.719829 CCCCAACTAGAAAATGAGGTTAAACT 59.280 38.462 0.00 0.00 0.00 2.66
8542 8850 6.717997 TCCCCAACTAGAAAATGAGGTTAAAC 59.282 38.462 0.00 0.00 0.00 2.01
8543 8851 6.854578 TCCCCAACTAGAAAATGAGGTTAAA 58.145 36.000 0.00 0.00 0.00 1.52
8544 8852 6.457159 TCCCCAACTAGAAAATGAGGTTAA 57.543 37.500 0.00 0.00 0.00 2.01
8545 8853 6.216662 TGATCCCCAACTAGAAAATGAGGTTA 59.783 38.462 0.00 0.00 0.00 2.85
8546 8854 5.015178 TGATCCCCAACTAGAAAATGAGGTT 59.985 40.000 0.00 0.00 0.00 3.50
8547 8855 4.540099 TGATCCCCAACTAGAAAATGAGGT 59.460 41.667 0.00 0.00 0.00 3.85
8548 8856 5.116084 TGATCCCCAACTAGAAAATGAGG 57.884 43.478 0.00 0.00 0.00 3.86
8549 8857 7.177392 ACTTTTGATCCCCAACTAGAAAATGAG 59.823 37.037 0.00 0.00 33.85 2.90
8550 8858 7.010160 ACTTTTGATCCCCAACTAGAAAATGA 58.990 34.615 0.00 0.00 33.85 2.57
8551 8859 7.232118 ACTTTTGATCCCCAACTAGAAAATG 57.768 36.000 0.00 0.00 33.85 2.32
8552 8860 7.855784 AACTTTTGATCCCCAACTAGAAAAT 57.144 32.000 0.00 0.00 33.85 1.82
8553 8861 7.343316 TGAAACTTTTGATCCCCAACTAGAAAA 59.657 33.333 0.00 0.00 33.85 2.29
8554 8862 6.836527 TGAAACTTTTGATCCCCAACTAGAAA 59.163 34.615 0.00 0.00 33.85 2.52
8555 8863 6.369629 TGAAACTTTTGATCCCCAACTAGAA 58.630 36.000 0.00 0.00 33.85 2.10
8556 8864 5.947663 TGAAACTTTTGATCCCCAACTAGA 58.052 37.500 0.00 0.00 33.85 2.43
8557 8865 5.335976 GCTGAAACTTTTGATCCCCAACTAG 60.336 44.000 0.00 0.00 33.85 2.57
8573 8881 1.882912 TGCAACATCGAGCTGAAACT 58.117 45.000 0.00 0.00 0.00 2.66
8635 8943 5.070313 CAGAAAAGGGGAAATGGAGAACAAA 59.930 40.000 0.00 0.00 0.00 2.83
8637 8945 4.151883 CAGAAAAGGGGAAATGGAGAACA 58.848 43.478 0.00 0.00 0.00 3.18
8638 8946 3.056536 GCAGAAAAGGGGAAATGGAGAAC 60.057 47.826 0.00 0.00 0.00 3.01
8655 8963 1.013596 CAGTTTCACACCACGCAGAA 58.986 50.000 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.