Multiple sequence alignment - TraesCS3A01G104600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G104600 chr3A 100.000 3288 0 0 1 3288 68118994 68122281 0.000000e+00 6072
1 TraesCS3A01G104600 chr3A 94.637 317 15 2 33 348 634661738 634662053 1.060000e-134 490
2 TraesCS3A01G104600 chr3D 93.510 2835 117 34 348 3167 59255697 59258479 0.000000e+00 4154
3 TraesCS3A01G104600 chr3B 92.654 2423 99 36 348 2745 94855299 94857667 0.000000e+00 3415
4 TraesCS3A01G104600 chr3B 92.056 428 32 2 2778 3204 94857740 94858166 4.690000e-168 601
5 TraesCS3A01G104600 chr2A 95.639 321 11 3 33 351 41605810 41605491 2.260000e-141 512
6 TraesCS3A01G104600 chr2A 93.269 104 7 0 3185 3288 109654254 109654151 1.580000e-33 154
7 TraesCS3A01G104600 chr2A 93.137 102 7 0 3187 3288 755331284 755331385 2.040000e-32 150
8 TraesCS3A01G104600 chr6A 94.953 317 15 1 33 348 457020892 457020576 2.280000e-136 496
9 TraesCS3A01G104600 chr6A 92.988 328 19 4 33 357 591888258 591887932 2.970000e-130 475
10 TraesCS3A01G104600 chr7A 94.136 324 15 3 29 351 612530596 612530916 1.060000e-134 490
11 TraesCS3A01G104600 chr7A 94.059 101 6 0 3188 3288 89922885 89922985 1.580000e-33 154
12 TraesCS3A01G104600 chr7A 92.453 106 8 0 3179 3284 688618074 688618179 5.680000e-33 152
13 TraesCS3A01G104600 chr2D 92.500 320 21 3 33 351 476698175 476698492 3.870000e-124 455
14 TraesCS3A01G104600 chr5B 92.212 321 23 2 31 350 537787491 537787810 1.390000e-123 453
15 TraesCS3A01G104600 chr6B 91.718 326 24 3 28 351 548176606 548176930 1.800000e-122 449
16 TraesCS3A01G104600 chr1D 91.925 322 24 2 31 351 9269568 9269888 1.800000e-122 449
17 TraesCS3A01G104600 chr1D 79.000 600 112 10 1377 1972 140785359 140784770 6.610000e-107 398
18 TraesCS3A01G104600 chr1A 78.631 599 116 8 1377 1972 150006898 150007487 1.430000e-103 387
19 TraesCS3A01G104600 chr1A 92.308 104 8 0 3185 3288 354686513 354686410 7.350000e-32 148
20 TraesCS3A01G104600 chr1A 89.565 115 9 3 3176 3288 16896864 16896977 3.420000e-30 143
21 TraesCS3A01G104600 chr4A 94.286 105 6 0 3184 3288 501937759 501937863 9.440000e-36 161
22 TraesCS3A01G104600 chr4A 93.137 102 7 0 3187 3288 137534832 137534731 2.040000e-32 150
23 TraesCS3A01G104600 chr5D 93.137 102 7 0 3187 3288 420915011 420915112 2.040000e-32 150


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G104600 chr3A 68118994 68122281 3287 False 6072 6072 100.000 1 3288 1 chr3A.!!$F1 3287
1 TraesCS3A01G104600 chr3D 59255697 59258479 2782 False 4154 4154 93.510 348 3167 1 chr3D.!!$F1 2819
2 TraesCS3A01G104600 chr3B 94855299 94858166 2867 False 2008 3415 92.355 348 3204 2 chr3B.!!$F1 2856
3 TraesCS3A01G104600 chr1D 140784770 140785359 589 True 398 398 79.000 1377 1972 1 chr1D.!!$R1 595
4 TraesCS3A01G104600 chr1A 150006898 150007487 589 False 387 387 78.631 1377 1972 1 chr1A.!!$F2 595

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
223 224 0.032815 TTTGCCTAGGTTTTTGCGCC 59.967 50.0 11.31 0.0 0.00 6.53 F
225 226 0.037017 TGCCTAGGTTTTTGCGCCTA 59.963 50.0 11.31 0.0 36.38 3.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1218 1238 1.613630 CTAGGTGCCTGGACTGGGT 60.614 63.158 0.0 0.0 0.0 4.51 R
2331 2363 1.768077 CATCACTCCTCCCCTCCCC 60.768 68.421 0.0 0.0 0.0 4.81 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.188247 TGTTCTAGACATCCTCAAACCG 57.812 45.455 0.00 0.00 32.00 4.44
22 23 3.830178 TGTTCTAGACATCCTCAAACCGA 59.170 43.478 0.00 0.00 32.00 4.69
23 24 4.466370 TGTTCTAGACATCCTCAAACCGAT 59.534 41.667 0.00 0.00 32.00 4.18
24 25 5.046591 TGTTCTAGACATCCTCAAACCGATT 60.047 40.000 0.00 0.00 32.00 3.34
25 26 5.677319 TCTAGACATCCTCAAACCGATTT 57.323 39.130 0.00 0.00 0.00 2.17
26 27 6.049955 TCTAGACATCCTCAAACCGATTTT 57.950 37.500 0.00 0.00 0.00 1.82
27 28 6.106673 TCTAGACATCCTCAAACCGATTTTC 58.893 40.000 0.00 0.00 0.00 2.29
28 29 4.911390 AGACATCCTCAAACCGATTTTCT 58.089 39.130 0.00 0.00 0.00 2.52
29 30 6.049955 AGACATCCTCAAACCGATTTTCTA 57.950 37.500 0.00 0.00 0.00 2.10
30 31 6.653989 AGACATCCTCAAACCGATTTTCTAT 58.346 36.000 0.00 0.00 0.00 1.98
31 32 7.112779 AGACATCCTCAAACCGATTTTCTATT 58.887 34.615 0.00 0.00 0.00 1.73
32 33 8.265055 AGACATCCTCAAACCGATTTTCTATTA 58.735 33.333 0.00 0.00 0.00 0.98
33 34 8.438676 ACATCCTCAAACCGATTTTCTATTAG 57.561 34.615 0.00 0.00 0.00 1.73
34 35 8.265055 ACATCCTCAAACCGATTTTCTATTAGA 58.735 33.333 0.00 0.00 0.00 2.10
35 36 8.552034 CATCCTCAAACCGATTTTCTATTAGAC 58.448 37.037 0.00 0.00 0.00 2.59
36 37 7.046033 TCCTCAAACCGATTTTCTATTAGACC 58.954 38.462 0.00 0.00 0.00 3.85
37 38 7.048512 CCTCAAACCGATTTTCTATTAGACCT 58.951 38.462 0.00 0.00 0.00 3.85
38 39 7.224949 CCTCAAACCGATTTTCTATTAGACCTC 59.775 40.741 0.00 0.00 0.00 3.85
39 40 7.848128 TCAAACCGATTTTCTATTAGACCTCT 58.152 34.615 0.00 0.00 0.00 3.69
40 41 8.319146 TCAAACCGATTTTCTATTAGACCTCTT 58.681 33.333 0.00 0.00 0.00 2.85
41 42 8.604890 CAAACCGATTTTCTATTAGACCTCTTC 58.395 37.037 0.00 0.00 0.00 2.87
42 43 6.818233 ACCGATTTTCTATTAGACCTCTTCC 58.182 40.000 0.00 0.00 0.00 3.46
43 44 6.383147 ACCGATTTTCTATTAGACCTCTTCCA 59.617 38.462 0.00 0.00 0.00 3.53
44 45 7.093024 ACCGATTTTCTATTAGACCTCTTCCAA 60.093 37.037 0.00 0.00 0.00 3.53
45 46 7.934120 CCGATTTTCTATTAGACCTCTTCCAAT 59.066 37.037 0.00 0.00 0.00 3.16
46 47 8.768955 CGATTTTCTATTAGACCTCTTCCAATG 58.231 37.037 0.00 0.00 0.00 2.82
47 48 7.865706 TTTTCTATTAGACCTCTTCCAATGC 57.134 36.000 0.00 0.00 0.00 3.56
48 49 6.560003 TTCTATTAGACCTCTTCCAATGCA 57.440 37.500 0.00 0.00 0.00 3.96
49 50 6.560003 TCTATTAGACCTCTTCCAATGCAA 57.440 37.500 0.00 0.00 0.00 4.08
50 51 6.957631 TCTATTAGACCTCTTCCAATGCAAA 58.042 36.000 0.00 0.00 0.00 3.68
51 52 7.050377 TCTATTAGACCTCTTCCAATGCAAAG 58.950 38.462 0.00 0.00 0.00 2.77
52 53 2.800250 AGACCTCTTCCAATGCAAAGG 58.200 47.619 0.00 0.00 0.00 3.11
53 54 2.108952 AGACCTCTTCCAATGCAAAGGT 59.891 45.455 7.57 4.39 39.76 3.50
54 55 2.229784 GACCTCTTCCAATGCAAAGGTG 59.770 50.000 7.57 3.35 37.26 4.00
68 69 2.409948 AAGGTGCTTAGATGAGGTGC 57.590 50.000 0.00 0.00 0.00 5.01
69 70 1.577736 AGGTGCTTAGATGAGGTGCT 58.422 50.000 0.00 0.00 0.00 4.40
70 71 2.752030 AGGTGCTTAGATGAGGTGCTA 58.248 47.619 0.00 0.00 0.00 3.49
71 72 3.107601 AGGTGCTTAGATGAGGTGCTAA 58.892 45.455 0.00 0.00 0.00 3.09
72 73 3.133721 AGGTGCTTAGATGAGGTGCTAAG 59.866 47.826 0.00 0.00 43.95 2.18
73 74 3.118592 GGTGCTTAGATGAGGTGCTAAGT 60.119 47.826 0.00 0.00 43.36 2.24
74 75 3.868077 GTGCTTAGATGAGGTGCTAAGTG 59.132 47.826 0.00 0.00 43.36 3.16
75 76 2.869192 GCTTAGATGAGGTGCTAAGTGC 59.131 50.000 0.00 0.00 43.36 4.40
91 92 7.259290 GCTAAGTGCATTAAATACCTTAGCA 57.741 36.000 24.94 0.00 44.06 3.49
92 93 7.703328 GCTAAGTGCATTAAATACCTTAGCAA 58.297 34.615 24.94 0.00 44.06 3.91
93 94 7.644157 GCTAAGTGCATTAAATACCTTAGCAAC 59.356 37.037 24.94 6.67 44.06 4.17
94 95 7.703058 AAGTGCATTAAATACCTTAGCAACT 57.297 32.000 0.00 0.00 31.78 3.16
95 96 7.321745 AGTGCATTAAATACCTTAGCAACTC 57.678 36.000 0.00 0.00 31.78 3.01
96 97 6.884295 AGTGCATTAAATACCTTAGCAACTCA 59.116 34.615 0.00 0.00 31.78 3.41
97 98 7.393234 AGTGCATTAAATACCTTAGCAACTCAA 59.607 33.333 0.00 0.00 31.78 3.02
98 99 7.484959 GTGCATTAAATACCTTAGCAACTCAAC 59.515 37.037 0.00 0.00 31.78 3.18
99 100 7.175816 TGCATTAAATACCTTAGCAACTCAACA 59.824 33.333 0.00 0.00 0.00 3.33
100 101 7.484959 GCATTAAATACCTTAGCAACTCAACAC 59.515 37.037 0.00 0.00 0.00 3.32
101 102 5.959618 AAATACCTTAGCAACTCAACACC 57.040 39.130 0.00 0.00 0.00 4.16
102 103 2.271944 ACCTTAGCAACTCAACACCC 57.728 50.000 0.00 0.00 0.00 4.61
103 104 1.202891 ACCTTAGCAACTCAACACCCC 60.203 52.381 0.00 0.00 0.00 4.95
104 105 1.202879 CCTTAGCAACTCAACACCCCA 60.203 52.381 0.00 0.00 0.00 4.96
105 106 2.582052 CTTAGCAACTCAACACCCCAA 58.418 47.619 0.00 0.00 0.00 4.12
106 107 2.969821 TAGCAACTCAACACCCCAAT 57.030 45.000 0.00 0.00 0.00 3.16
107 108 1.331214 AGCAACTCAACACCCCAATG 58.669 50.000 0.00 0.00 0.00 2.82
108 109 0.319813 GCAACTCAACACCCCAATGC 60.320 55.000 0.00 0.00 0.00 3.56
109 110 1.039068 CAACTCAACACCCCAATGCA 58.961 50.000 0.00 0.00 0.00 3.96
110 111 1.619827 CAACTCAACACCCCAATGCAT 59.380 47.619 0.00 0.00 0.00 3.96
111 112 2.824936 CAACTCAACACCCCAATGCATA 59.175 45.455 0.00 0.00 0.00 3.14
112 113 2.726821 ACTCAACACCCCAATGCATAG 58.273 47.619 0.00 0.00 0.00 2.23
113 114 2.026641 CTCAACACCCCAATGCATAGG 58.973 52.381 0.00 3.90 0.00 2.57
114 115 1.357420 TCAACACCCCAATGCATAGGT 59.643 47.619 13.23 11.45 0.00 3.08
131 132 5.869350 CATAGGTGCTTAGCTTGTTGTTAC 58.131 41.667 5.60 0.00 0.00 2.50
132 133 4.086706 AGGTGCTTAGCTTGTTGTTACT 57.913 40.909 5.60 0.00 0.00 2.24
133 134 5.223449 AGGTGCTTAGCTTGTTGTTACTA 57.777 39.130 5.60 0.00 0.00 1.82
134 135 5.617252 AGGTGCTTAGCTTGTTGTTACTAA 58.383 37.500 5.60 0.00 0.00 2.24
135 136 5.701290 AGGTGCTTAGCTTGTTGTTACTAAG 59.299 40.000 5.60 0.00 42.83 2.18
139 140 6.539649 CTTAGCTTGTTGTTACTAAGCACA 57.460 37.500 16.73 6.26 46.90 4.57
140 141 4.813296 AGCTTGTTGTTACTAAGCACAC 57.187 40.909 16.73 0.00 46.90 3.82
141 142 4.196193 AGCTTGTTGTTACTAAGCACACA 58.804 39.130 16.73 0.00 46.90 3.72
142 143 4.821805 AGCTTGTTGTTACTAAGCACACAT 59.178 37.500 16.73 0.17 46.90 3.21
143 144 5.299279 AGCTTGTTGTTACTAAGCACACATT 59.701 36.000 16.73 0.00 46.90 2.71
144 145 6.485313 AGCTTGTTGTTACTAAGCACACATTA 59.515 34.615 16.73 0.00 46.90 1.90
145 146 7.174946 AGCTTGTTGTTACTAAGCACACATTAT 59.825 33.333 16.73 0.00 46.90 1.28
146 147 7.807907 GCTTGTTGTTACTAAGCACACATTATT 59.192 33.333 12.11 0.00 44.59 1.40
147 148 9.677567 CTTGTTGTTACTAAGCACACATTATTT 57.322 29.630 0.00 0.00 0.00 1.40
159 160 8.279970 AGCACACATTATTTAATGAGTTAGCA 57.720 30.769 15.39 0.00 42.20 3.49
160 161 8.184192 AGCACACATTATTTAATGAGTTAGCAC 58.816 33.333 15.39 3.36 42.20 4.40
161 162 7.432252 GCACACATTATTTAATGAGTTAGCACC 59.568 37.037 15.39 0.00 42.20 5.01
162 163 8.677300 CACACATTATTTAATGAGTTAGCACCT 58.323 33.333 15.39 0.00 42.20 4.00
163 164 9.899661 ACACATTATTTAATGAGTTAGCACCTA 57.100 29.630 15.39 0.00 42.20 3.08
170 171 9.740710 ATTTAATGAGTTAGCACCTAAAGTCTT 57.259 29.630 0.00 0.00 0.00 3.01
171 172 9.569122 TTTAATGAGTTAGCACCTAAAGTCTTT 57.431 29.630 2.81 2.81 0.00 2.52
172 173 7.674471 AATGAGTTAGCACCTAAAGTCTTTC 57.326 36.000 0.00 0.00 0.00 2.62
173 174 6.169557 TGAGTTAGCACCTAAAGTCTTTCA 57.830 37.500 0.00 0.00 0.00 2.69
174 175 6.769512 TGAGTTAGCACCTAAAGTCTTTCAT 58.230 36.000 0.00 0.00 0.00 2.57
175 176 6.650807 TGAGTTAGCACCTAAAGTCTTTCATG 59.349 38.462 0.00 0.53 0.00 3.07
176 177 6.534634 AGTTAGCACCTAAAGTCTTTCATGT 58.465 36.000 0.00 0.00 0.00 3.21
177 178 7.676947 AGTTAGCACCTAAAGTCTTTCATGTA 58.323 34.615 0.00 0.00 0.00 2.29
178 179 8.322091 AGTTAGCACCTAAAGTCTTTCATGTAT 58.678 33.333 0.00 0.00 0.00 2.29
179 180 8.947115 GTTAGCACCTAAAGTCTTTCATGTATT 58.053 33.333 0.00 0.00 0.00 1.89
180 181 7.383102 AGCACCTAAAGTCTTTCATGTATTG 57.617 36.000 0.00 0.00 0.00 1.90
181 182 6.375455 AGCACCTAAAGTCTTTCATGTATTGG 59.625 38.462 0.00 0.00 0.00 3.16
182 183 6.151144 GCACCTAAAGTCTTTCATGTATTGGT 59.849 38.462 0.00 0.00 0.00 3.67
183 184 7.626452 GCACCTAAAGTCTTTCATGTATTGGTC 60.626 40.741 0.00 0.00 0.00 4.02
184 185 7.390440 CACCTAAAGTCTTTCATGTATTGGTCA 59.610 37.037 0.00 0.00 0.00 4.02
185 186 7.942341 ACCTAAAGTCTTTCATGTATTGGTCAA 59.058 33.333 0.00 0.00 0.00 3.18
186 187 8.792633 CCTAAAGTCTTTCATGTATTGGTCAAA 58.207 33.333 0.00 0.00 0.00 2.69
189 190 9.480053 AAAGTCTTTCATGTATTGGTCAAATTG 57.520 29.630 0.00 0.00 0.00 2.32
190 191 8.181904 AGTCTTTCATGTATTGGTCAAATTGT 57.818 30.769 0.00 0.00 0.00 2.71
191 192 8.641541 AGTCTTTCATGTATTGGTCAAATTGTT 58.358 29.630 0.00 0.00 0.00 2.83
192 193 9.260002 GTCTTTCATGTATTGGTCAAATTGTTT 57.740 29.630 0.00 0.00 0.00 2.83
193 194 9.474920 TCTTTCATGTATTGGTCAAATTGTTTC 57.525 29.630 0.00 0.00 0.00 2.78
194 195 9.258826 CTTTCATGTATTGGTCAAATTGTTTCA 57.741 29.630 0.00 0.00 0.00 2.69
195 196 9.775854 TTTCATGTATTGGTCAAATTGTTTCAT 57.224 25.926 0.00 0.00 0.00 2.57
196 197 9.775854 TTCATGTATTGGTCAAATTGTTTCATT 57.224 25.926 0.00 0.00 0.00 2.57
197 198 9.775854 TCATGTATTGGTCAAATTGTTTCATTT 57.224 25.926 0.00 0.00 0.00 2.32
203 204 8.430801 TTGGTCAAATTGTTTCATTTAAGTGG 57.569 30.769 0.00 0.00 0.00 4.00
204 205 7.560368 TGGTCAAATTGTTTCATTTAAGTGGT 58.440 30.769 0.00 0.00 0.00 4.16
205 206 8.043710 TGGTCAAATTGTTTCATTTAAGTGGTT 58.956 29.630 0.00 0.00 0.00 3.67
206 207 8.888716 GGTCAAATTGTTTCATTTAAGTGGTTT 58.111 29.630 0.00 0.00 0.00 3.27
207 208 9.701355 GTCAAATTGTTTCATTTAAGTGGTTTG 57.299 29.630 0.00 0.00 0.00 2.93
208 209 8.394121 TCAAATTGTTTCATTTAAGTGGTTTGC 58.606 29.630 0.00 0.00 0.00 3.68
209 210 6.859420 ATTGTTTCATTTAAGTGGTTTGCC 57.141 33.333 0.00 0.00 0.00 4.52
210 211 5.606348 TGTTTCATTTAAGTGGTTTGCCT 57.394 34.783 0.00 0.00 35.27 4.75
211 212 6.716934 TGTTTCATTTAAGTGGTTTGCCTA 57.283 33.333 0.00 0.00 35.27 3.93
212 213 6.744112 TGTTTCATTTAAGTGGTTTGCCTAG 58.256 36.000 0.00 0.00 35.27 3.02
213 214 5.975693 TTCATTTAAGTGGTTTGCCTAGG 57.024 39.130 3.67 3.67 35.27 3.02
214 215 4.993028 TCATTTAAGTGGTTTGCCTAGGT 58.007 39.130 11.31 0.00 35.27 3.08
215 216 5.390387 TCATTTAAGTGGTTTGCCTAGGTT 58.610 37.500 11.31 0.00 35.27 3.50
216 217 5.836358 TCATTTAAGTGGTTTGCCTAGGTTT 59.164 36.000 11.31 0.00 35.27 3.27
217 218 6.325286 TCATTTAAGTGGTTTGCCTAGGTTTT 59.675 34.615 11.31 0.00 35.27 2.43
218 219 6.547930 TTTAAGTGGTTTGCCTAGGTTTTT 57.452 33.333 11.31 0.00 35.27 1.94
219 220 4.400529 AAGTGGTTTGCCTAGGTTTTTG 57.599 40.909 11.31 0.00 35.27 2.44
220 221 2.102420 AGTGGTTTGCCTAGGTTTTTGC 59.898 45.455 11.31 0.00 35.27 3.68
221 222 1.067821 TGGTTTGCCTAGGTTTTTGCG 59.932 47.619 11.31 0.00 35.27 4.85
222 223 1.136690 GTTTGCCTAGGTTTTTGCGC 58.863 50.000 11.31 0.00 0.00 6.09
223 224 0.032815 TTTGCCTAGGTTTTTGCGCC 59.967 50.000 11.31 0.00 0.00 6.53
224 225 0.825840 TTGCCTAGGTTTTTGCGCCT 60.826 50.000 11.31 0.00 38.81 5.52
225 226 0.037017 TGCCTAGGTTTTTGCGCCTA 59.963 50.000 11.31 0.00 36.38 3.93
239 240 2.278026 CGCCTAGCATTGGTTTTTCC 57.722 50.000 0.00 0.00 0.00 3.13
240 241 1.818674 CGCCTAGCATTGGTTTTTCCT 59.181 47.619 0.00 0.00 37.07 3.36
241 242 2.415893 CGCCTAGCATTGGTTTTTCCTG 60.416 50.000 0.00 0.00 37.07 3.86
242 243 2.094026 GCCTAGCATTGGTTTTTCCTGG 60.094 50.000 0.00 0.00 37.07 4.45
243 244 2.497273 CCTAGCATTGGTTTTTCCTGGG 59.503 50.000 0.00 0.00 37.07 4.45
244 245 2.397044 AGCATTGGTTTTTCCTGGGA 57.603 45.000 0.00 0.00 37.07 4.37
245 246 2.906568 AGCATTGGTTTTTCCTGGGAT 58.093 42.857 0.00 0.00 37.07 3.85
246 247 2.833943 AGCATTGGTTTTTCCTGGGATC 59.166 45.455 0.00 0.00 37.07 3.36
247 248 2.566724 GCATTGGTTTTTCCTGGGATCA 59.433 45.455 0.00 0.00 37.07 2.92
248 249 3.617288 GCATTGGTTTTTCCTGGGATCAC 60.617 47.826 0.00 0.00 37.07 3.06
249 250 2.302587 TGGTTTTTCCTGGGATCACC 57.697 50.000 0.00 0.00 40.81 4.02
263 264 5.622346 GGGATCACCAAAGTATTCTCTCT 57.378 43.478 0.00 0.00 39.85 3.10
264 265 5.606505 GGGATCACCAAAGTATTCTCTCTC 58.393 45.833 0.00 0.00 39.85 3.20
265 266 5.454045 GGGATCACCAAAGTATTCTCTCTCC 60.454 48.000 0.00 0.00 39.85 3.71
266 267 5.365314 GGATCACCAAAGTATTCTCTCTCCT 59.635 44.000 0.00 0.00 35.97 3.69
267 268 5.923733 TCACCAAAGTATTCTCTCTCCTC 57.076 43.478 0.00 0.00 0.00 3.71
268 269 5.584913 TCACCAAAGTATTCTCTCTCCTCT 58.415 41.667 0.00 0.00 0.00 3.69
269 270 6.019748 TCACCAAAGTATTCTCTCTCCTCTT 58.980 40.000 0.00 0.00 0.00 2.85
270 271 6.498651 TCACCAAAGTATTCTCTCTCCTCTTT 59.501 38.462 0.00 0.00 0.00 2.52
271 272 7.674348 TCACCAAAGTATTCTCTCTCCTCTTTA 59.326 37.037 0.00 0.00 0.00 1.85
272 273 8.314751 CACCAAAGTATTCTCTCTCCTCTTTAA 58.685 37.037 0.00 0.00 0.00 1.52
273 274 8.881262 ACCAAAGTATTCTCTCTCCTCTTTAAA 58.119 33.333 0.00 0.00 0.00 1.52
274 275 9.898152 CCAAAGTATTCTCTCTCCTCTTTAAAT 57.102 33.333 0.00 0.00 0.00 1.40
281 282 6.868622 TCTCTCTCCTCTTTAAATGTAGTGC 58.131 40.000 0.00 0.00 0.00 4.40
282 283 5.978814 TCTCTCCTCTTTAAATGTAGTGCC 58.021 41.667 0.00 0.00 0.00 5.01
283 284 5.483937 TCTCTCCTCTTTAAATGTAGTGCCA 59.516 40.000 0.00 0.00 0.00 4.92
284 285 6.156949 TCTCTCCTCTTTAAATGTAGTGCCAT 59.843 38.462 0.00 0.00 0.00 4.40
285 286 6.115446 TCTCCTCTTTAAATGTAGTGCCATG 58.885 40.000 0.00 0.00 0.00 3.66
286 287 5.815581 TCCTCTTTAAATGTAGTGCCATGT 58.184 37.500 0.00 0.00 0.00 3.21
287 288 5.880332 TCCTCTTTAAATGTAGTGCCATGTC 59.120 40.000 0.00 0.00 0.00 3.06
288 289 5.647658 CCTCTTTAAATGTAGTGCCATGTCA 59.352 40.000 0.00 0.00 0.00 3.58
289 290 6.319658 CCTCTTTAAATGTAGTGCCATGTCAT 59.680 38.462 0.00 0.00 0.00 3.06
290 291 7.148018 CCTCTTTAAATGTAGTGCCATGTCATT 60.148 37.037 0.00 0.00 0.00 2.57
291 292 8.121305 TCTTTAAATGTAGTGCCATGTCATTT 57.879 30.769 0.00 0.00 40.32 2.32
292 293 8.584157 TCTTTAAATGTAGTGCCATGTCATTTT 58.416 29.630 0.00 0.00 38.83 1.82
293 294 9.206870 CTTTAAATGTAGTGCCATGTCATTTTT 57.793 29.630 0.00 0.00 38.83 1.94
312 313 4.870123 TTTTCACTTATGTGGCAATGCT 57.130 36.364 4.82 0.00 43.94 3.79
313 314 4.870123 TTTCACTTATGTGGCAATGCTT 57.130 36.364 4.82 0.00 43.94 3.91
314 315 5.973899 TTTCACTTATGTGGCAATGCTTA 57.026 34.783 4.82 0.00 43.94 3.09
315 316 5.565592 TTCACTTATGTGGCAATGCTTAG 57.434 39.130 4.82 0.00 43.94 2.18
316 317 3.378112 TCACTTATGTGGCAATGCTTAGC 59.622 43.478 4.82 0.00 43.94 3.09
317 318 3.129113 CACTTATGTGGCAATGCTTAGCA 59.871 43.478 10.09 10.09 40.75 3.49
318 319 3.129287 ACTTATGTGGCAATGCTTAGCAC 59.871 43.478 9.82 5.27 43.04 4.40
319 320 0.819582 ATGTGGCAATGCTTAGCACC 59.180 50.000 9.82 7.27 43.04 5.01
320 321 0.251297 TGTGGCAATGCTTAGCACCT 60.251 50.000 9.82 0.00 43.04 4.00
321 322 0.171903 GTGGCAATGCTTAGCACCTG 59.828 55.000 9.82 11.34 43.04 4.00
322 323 0.251297 TGGCAATGCTTAGCACCTGT 60.251 50.000 9.82 0.00 43.04 4.00
323 324 0.890683 GGCAATGCTTAGCACCTGTT 59.109 50.000 9.82 0.00 43.04 3.16
324 325 1.135286 GGCAATGCTTAGCACCTGTTC 60.135 52.381 9.82 3.85 43.04 3.18
325 326 1.541147 GCAATGCTTAGCACCTGTTCA 59.459 47.619 9.82 0.00 43.04 3.18
326 327 2.669391 GCAATGCTTAGCACCTGTTCAC 60.669 50.000 9.82 0.00 43.04 3.18
327 328 1.442769 ATGCTTAGCACCTGTTCACG 58.557 50.000 9.82 0.00 43.04 4.35
328 329 0.602638 TGCTTAGCACCTGTTCACGG 60.603 55.000 1.39 0.00 31.71 4.94
329 330 0.602905 GCTTAGCACCTGTTCACGGT 60.603 55.000 0.00 0.00 34.38 4.83
333 334 4.361253 CACCTGTTCACGGTGGAG 57.639 61.111 8.50 2.37 46.38 3.86
334 335 1.961277 CACCTGTTCACGGTGGAGC 60.961 63.158 8.50 0.00 46.38 4.70
335 336 2.425592 CCTGTTCACGGTGGAGCA 59.574 61.111 8.50 4.42 0.00 4.26
336 337 1.003355 CCTGTTCACGGTGGAGCAT 60.003 57.895 8.50 0.00 0.00 3.79
337 338 0.606401 CCTGTTCACGGTGGAGCATT 60.606 55.000 8.50 0.00 0.00 3.56
338 339 0.518636 CTGTTCACGGTGGAGCATTG 59.481 55.000 8.50 0.00 0.00 2.82
339 340 0.888736 TGTTCACGGTGGAGCATTGG 60.889 55.000 8.50 0.00 0.00 3.16
340 341 1.303236 TTCACGGTGGAGCATTGGG 60.303 57.895 8.50 0.00 0.00 4.12
341 342 1.773856 TTCACGGTGGAGCATTGGGA 61.774 55.000 8.50 0.00 0.00 4.37
342 343 1.746615 CACGGTGGAGCATTGGGAG 60.747 63.158 0.00 0.00 0.00 4.30
343 344 2.124570 CGGTGGAGCATTGGGAGG 60.125 66.667 0.00 0.00 0.00 4.30
344 345 2.276740 GGTGGAGCATTGGGAGGG 59.723 66.667 0.00 0.00 0.00 4.30
345 346 2.440980 GTGGAGCATTGGGAGGGC 60.441 66.667 0.00 0.00 0.00 5.19
346 347 3.743017 TGGAGCATTGGGAGGGCC 61.743 66.667 0.00 0.00 0.00 5.80
367 368 6.239317 GGGCCTTAGGGAATTATAGCTTTTTG 60.239 42.308 0.84 0.00 33.58 2.44
462 469 3.999663 CAGTTGAGAGTTGGATCCAAGAC 59.000 47.826 27.73 21.94 36.52 3.01
467 474 1.645710 AGTTGGATCCAAGACCGACT 58.354 50.000 27.73 17.39 43.61 4.18
476 483 2.286523 AAGACCGACTCCTGCCCAG 61.287 63.158 0.00 0.00 0.00 4.45
531 538 5.149273 CAGCAGCATAAAAGTGTAACACAG 58.851 41.667 0.00 0.00 41.43 3.66
584 591 1.405821 TGCCACCGTTCGTTCAAAAAT 59.594 42.857 0.00 0.00 0.00 1.82
587 594 4.231439 GCCACCGTTCGTTCAAAAATAAT 58.769 39.130 0.00 0.00 0.00 1.28
588 595 4.089351 GCCACCGTTCGTTCAAAAATAATG 59.911 41.667 0.00 0.00 0.00 1.90
594 604 7.094975 ACCGTTCGTTCAAAAATAATGATCAGA 60.095 33.333 0.09 0.00 0.00 3.27
668 684 6.095440 TGCTAGTAAATTTTGAGCAGGGAATC 59.905 38.462 14.06 0.00 38.20 2.52
676 692 2.899339 GCAGGGAATCGCAGCTCC 60.899 66.667 7.41 0.00 0.00 4.70
716 732 4.927425 TCGCTGAAACACAATTACTCCTAC 59.073 41.667 0.00 0.00 0.00 3.18
770 789 3.247006 AGGTAGCCATCACTACAAACG 57.753 47.619 4.29 0.00 43.61 3.60
794 813 0.968901 TACTCCACCACTGCTACGGG 60.969 60.000 0.00 0.00 0.00 5.28
808 827 2.835027 CTACGGGGCAAGGAGTAATTC 58.165 52.381 0.00 0.00 0.00 2.17
856 875 6.336566 TCAGTTTGCAGCTCATTTAAAAACA 58.663 32.000 0.00 0.00 0.00 2.83
859 878 8.124199 CAGTTTGCAGCTCATTTAAAAACATTT 58.876 29.630 0.00 0.00 0.00 2.32
960 980 4.801330 AATGATTTTCCCGGGAGAAAAC 57.199 40.909 28.58 23.98 45.72 2.43
1166 1186 1.518302 GTCTTCCTTCCTCTCGGCC 59.482 63.158 0.00 0.00 0.00 6.13
1578 1598 2.266055 GCCTTCACCCTCTCCGTG 59.734 66.667 0.00 0.00 0.00 4.94
2454 2489 2.041216 AGTACACCTTGGGGATTGTTCC 59.959 50.000 0.00 0.00 41.77 3.62
2472 2507 3.648339 TCCGCTTAACTTTGTACGACT 57.352 42.857 0.00 0.00 0.00 4.18
2473 2508 4.764679 TCCGCTTAACTTTGTACGACTA 57.235 40.909 0.00 0.00 0.00 2.59
2474 2509 5.314923 TCCGCTTAACTTTGTACGACTAT 57.685 39.130 0.00 0.00 0.00 2.12
2529 2566 5.890424 TTTGTCGGAGGGAATTTGTAATC 57.110 39.130 0.00 0.00 0.00 1.75
2609 2646 2.831526 ACAGCCCATGGTTTTGTATTCC 59.168 45.455 11.73 0.00 0.00 3.01
2634 2671 7.010183 CCTGACGGACAGTTTTGTAATAGTATG 59.990 40.741 6.72 0.00 44.40 2.39
2635 2672 6.814644 TGACGGACAGTTTTGTAATAGTATGG 59.185 38.462 0.00 0.00 37.76 2.74
2636 2673 6.938507 ACGGACAGTTTTGTAATAGTATGGA 58.061 36.000 0.00 0.00 37.76 3.41
2673 2710 7.453034 CAGAGATTACGCGTGAATTTTTCTTA 58.547 34.615 24.59 0.00 0.00 2.10
2755 2844 5.812642 GCCGAAGTACAGTAGTACAGTACTA 59.187 44.000 28.53 15.43 46.31 1.82
2776 2865 4.766404 AATTTTGTACGCCAGAGGAAAG 57.234 40.909 0.00 0.00 0.00 2.62
2784 2873 3.191539 CAGAGGAAAGGCGAGCGC 61.192 66.667 6.27 6.27 41.06 5.92
2788 2877 2.125673 GGAAAGGCGAGCGCTGTA 60.126 61.111 18.48 0.00 41.60 2.74
2816 2905 3.070302 ACAGGAAGTGAGGAGTTCTGAAC 59.930 47.826 12.54 12.54 32.73 3.18
2818 2907 3.323403 AGGAAGTGAGGAGTTCTGAACAG 59.677 47.826 21.50 0.00 32.73 3.16
2836 2925 8.612619 TCTGAACAGAAAGAAATGTACAAGTTC 58.387 33.333 12.53 12.53 33.91 3.01
2889 2978 1.215382 GGGCAAAAGGGTCATTCGC 59.785 57.895 0.00 0.00 0.00 4.70
2891 2980 0.109132 GGCAAAAGGGTCATTCGCTG 60.109 55.000 0.00 0.00 39.31 5.18
2991 3084 6.403866 AGGTCAACACAAATCATTAAAGCA 57.596 33.333 0.00 0.00 0.00 3.91
2995 3088 3.574614 ACACAAATCATTAAAGCACGCC 58.425 40.909 0.00 0.00 0.00 5.68
3019 3112 2.125202 CTTTTCCCAACACGCGACCC 62.125 60.000 15.93 0.00 0.00 4.46
3043 3136 5.959512 TGGAAAAGGAGGAGGAAATTTACA 58.040 37.500 2.58 0.00 0.00 2.41
3102 3195 2.479560 CCGCTATTGTTAAAAGCTGGGC 60.480 50.000 0.00 0.00 34.03 5.36
3105 3198 3.487544 GCTATTGTTAAAAGCTGGGCGAG 60.488 47.826 0.00 0.00 33.40 5.03
3135 3228 4.219288 ACAATGAAGAAGCATCTTTGGTCC 59.781 41.667 5.55 0.00 45.91 4.46
3154 3247 1.202533 CCGCAGTCTAATCATCCGGTT 60.203 52.381 0.00 0.00 0.00 4.44
3183 3276 7.924358 TGGTGGTAGTGGAGTACATTATTAT 57.076 36.000 0.00 0.00 0.00 1.28
3201 3294 9.930693 CATTATTATTAGTACTCCCTTCTGTCC 57.069 37.037 0.00 0.00 0.00 4.02
3202 3295 9.900112 ATTATTATTAGTACTCCCTTCTGTCCT 57.100 33.333 0.00 0.00 0.00 3.85
3204 3297 7.657023 TTATTAGTACTCCCTTCTGTCCTTC 57.343 40.000 0.00 0.00 0.00 3.46
3205 3298 3.837399 AGTACTCCCTTCTGTCCTTCT 57.163 47.619 0.00 0.00 0.00 2.85
3206 3299 4.134933 AGTACTCCCTTCTGTCCTTCTT 57.865 45.455 0.00 0.00 0.00 2.52
3207 3300 5.272405 AGTACTCCCTTCTGTCCTTCTTA 57.728 43.478 0.00 0.00 0.00 2.10
3208 3301 5.018149 AGTACTCCCTTCTGTCCTTCTTAC 58.982 45.833 0.00 0.00 0.00 2.34
3209 3302 4.134933 ACTCCCTTCTGTCCTTCTTACT 57.865 45.455 0.00 0.00 0.00 2.24
3210 3303 4.090819 ACTCCCTTCTGTCCTTCTTACTC 58.909 47.826 0.00 0.00 0.00 2.59
3211 3304 4.202738 ACTCCCTTCTGTCCTTCTTACTCT 60.203 45.833 0.00 0.00 0.00 3.24
3212 3305 4.090090 TCCCTTCTGTCCTTCTTACTCTG 58.910 47.826 0.00 0.00 0.00 3.35
3213 3306 3.368948 CCCTTCTGTCCTTCTTACTCTGC 60.369 52.174 0.00 0.00 0.00 4.26
3214 3307 3.259374 CCTTCTGTCCTTCTTACTCTGCA 59.741 47.826 0.00 0.00 0.00 4.41
3215 3308 4.081198 CCTTCTGTCCTTCTTACTCTGCAT 60.081 45.833 0.00 0.00 0.00 3.96
3216 3309 5.127845 CCTTCTGTCCTTCTTACTCTGCATA 59.872 44.000 0.00 0.00 0.00 3.14
3217 3310 6.183360 CCTTCTGTCCTTCTTACTCTGCATAT 60.183 42.308 0.00 0.00 0.00 1.78
3218 3311 6.798427 TCTGTCCTTCTTACTCTGCATATT 57.202 37.500 0.00 0.00 0.00 1.28
3219 3312 7.898014 TCTGTCCTTCTTACTCTGCATATTA 57.102 36.000 0.00 0.00 0.00 0.98
3220 3313 7.946207 TCTGTCCTTCTTACTCTGCATATTAG 58.054 38.462 0.00 0.00 0.00 1.73
3221 3314 7.014711 TCTGTCCTTCTTACTCTGCATATTAGG 59.985 40.741 0.00 0.00 0.00 2.69
3222 3315 6.611642 TGTCCTTCTTACTCTGCATATTAGGT 59.388 38.462 0.00 0.00 0.00 3.08
3223 3316 7.125811 TGTCCTTCTTACTCTGCATATTAGGTT 59.874 37.037 0.00 0.00 0.00 3.50
3224 3317 7.988028 GTCCTTCTTACTCTGCATATTAGGTTT 59.012 37.037 0.00 0.00 0.00 3.27
3225 3318 7.987458 TCCTTCTTACTCTGCATATTAGGTTTG 59.013 37.037 0.00 0.00 0.00 2.93
3226 3319 7.770897 CCTTCTTACTCTGCATATTAGGTTTGT 59.229 37.037 0.00 0.00 0.00 2.83
3227 3320 8.718102 TTCTTACTCTGCATATTAGGTTTGTC 57.282 34.615 0.00 0.00 0.00 3.18
3228 3321 8.079211 TCTTACTCTGCATATTAGGTTTGTCT 57.921 34.615 0.00 0.00 0.00 3.41
3229 3322 9.197306 TCTTACTCTGCATATTAGGTTTGTCTA 57.803 33.333 0.00 0.00 0.00 2.59
3230 3323 9.817809 CTTACTCTGCATATTAGGTTTGTCTAA 57.182 33.333 0.00 0.00 34.23 2.10
3232 3325 8.723942 ACTCTGCATATTAGGTTTGTCTAAAG 57.276 34.615 0.00 0.00 33.54 1.85
3233 3326 8.322091 ACTCTGCATATTAGGTTTGTCTAAAGT 58.678 33.333 0.00 0.00 33.54 2.66
3234 3327 8.718102 TCTGCATATTAGGTTTGTCTAAAGTC 57.282 34.615 0.00 0.00 33.54 3.01
3235 3328 8.318412 TCTGCATATTAGGTTTGTCTAAAGTCA 58.682 33.333 0.00 0.00 33.54 3.41
3236 3329 8.856153 TGCATATTAGGTTTGTCTAAAGTCAA 57.144 30.769 0.00 0.00 33.54 3.18
3237 3330 9.461312 TGCATATTAGGTTTGTCTAAAGTCAAT 57.539 29.630 0.00 0.00 33.54 2.57
3238 3331 9.937175 GCATATTAGGTTTGTCTAAAGTCAATC 57.063 33.333 0.00 0.00 33.54 2.67
3242 3335 9.965902 ATTAGGTTTGTCTAAAGTCAATCTCAT 57.034 29.630 0.00 0.00 33.54 2.90
3243 3336 9.793259 TTAGGTTTGTCTAAAGTCAATCTCATT 57.207 29.630 0.00 0.00 0.00 2.57
3244 3337 8.329203 AGGTTTGTCTAAAGTCAATCTCATTC 57.671 34.615 0.00 0.00 0.00 2.67
3245 3338 7.939039 AGGTTTGTCTAAAGTCAATCTCATTCA 59.061 33.333 0.00 0.00 0.00 2.57
3246 3339 8.567948 GGTTTGTCTAAAGTCAATCTCATTCAA 58.432 33.333 0.00 0.00 0.00 2.69
3247 3340 9.387123 GTTTGTCTAAAGTCAATCTCATTCAAC 57.613 33.333 0.00 0.00 0.00 3.18
3248 3341 8.908786 TTGTCTAAAGTCAATCTCATTCAACT 57.091 30.769 0.00 0.00 0.00 3.16
3249 3342 8.908786 TGTCTAAAGTCAATCTCATTCAACTT 57.091 30.769 0.00 0.00 30.66 2.66
3250 3343 9.342308 TGTCTAAAGTCAATCTCATTCAACTTT 57.658 29.630 0.00 0.00 38.17 2.66
3251 3344 9.604626 GTCTAAAGTCAATCTCATTCAACTTTG 57.395 33.333 8.19 0.82 36.62 2.77
3252 3345 9.559732 TCTAAAGTCAATCTCATTCAACTTTGA 57.440 29.630 8.19 0.00 36.62 2.69
3255 3348 7.991084 AGTCAATCTCATTCAACTTTGATCA 57.009 32.000 0.00 0.00 37.00 2.92
3256 3349 8.400184 AGTCAATCTCATTCAACTTTGATCAA 57.600 30.769 3.38 3.38 37.00 2.57
3257 3350 8.512956 AGTCAATCTCATTCAACTTTGATCAAG 58.487 33.333 8.41 5.87 37.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.830178 TCGGTTTGAGGATGTCTAGAACA 59.170 43.478 0.00 0.00 43.51 3.18
1 2 4.451629 TCGGTTTGAGGATGTCTAGAAC 57.548 45.455 0.00 0.00 0.00 3.01
2 3 5.677319 AATCGGTTTGAGGATGTCTAGAA 57.323 39.130 0.00 0.00 0.00 2.10
3 4 5.677319 AAATCGGTTTGAGGATGTCTAGA 57.323 39.130 0.00 0.00 0.00 2.43
4 5 6.109359 AGAAAATCGGTTTGAGGATGTCTAG 58.891 40.000 0.00 0.00 0.00 2.43
5 6 6.049955 AGAAAATCGGTTTGAGGATGTCTA 57.950 37.500 0.00 0.00 0.00 2.59
6 7 4.911390 AGAAAATCGGTTTGAGGATGTCT 58.089 39.130 0.00 0.00 0.00 3.41
7 8 6.927294 ATAGAAAATCGGTTTGAGGATGTC 57.073 37.500 0.00 0.00 0.00 3.06
8 9 8.265055 TCTAATAGAAAATCGGTTTGAGGATGT 58.735 33.333 0.00 0.00 0.00 3.06
9 10 8.552034 GTCTAATAGAAAATCGGTTTGAGGATG 58.448 37.037 0.00 0.00 0.00 3.51
10 11 7.715686 GGTCTAATAGAAAATCGGTTTGAGGAT 59.284 37.037 0.00 0.00 0.00 3.24
11 12 7.046033 GGTCTAATAGAAAATCGGTTTGAGGA 58.954 38.462 0.00 0.00 0.00 3.71
12 13 7.048512 AGGTCTAATAGAAAATCGGTTTGAGG 58.951 38.462 0.00 0.00 0.00 3.86
13 14 7.982354 AGAGGTCTAATAGAAAATCGGTTTGAG 59.018 37.037 0.00 0.00 0.00 3.02
14 15 7.848128 AGAGGTCTAATAGAAAATCGGTTTGA 58.152 34.615 0.00 0.00 0.00 2.69
15 16 8.494016 AAGAGGTCTAATAGAAAATCGGTTTG 57.506 34.615 0.00 0.00 0.00 2.93
16 17 7.769507 GGAAGAGGTCTAATAGAAAATCGGTTT 59.230 37.037 0.00 0.00 0.00 3.27
17 18 7.093024 TGGAAGAGGTCTAATAGAAAATCGGTT 60.093 37.037 0.00 0.00 0.00 4.44
18 19 6.383147 TGGAAGAGGTCTAATAGAAAATCGGT 59.617 38.462 0.00 0.00 0.00 4.69
19 20 6.817184 TGGAAGAGGTCTAATAGAAAATCGG 58.183 40.000 0.00 0.00 0.00 4.18
20 21 8.768955 CATTGGAAGAGGTCTAATAGAAAATCG 58.231 37.037 0.00 0.00 35.38 3.34
21 22 8.563732 GCATTGGAAGAGGTCTAATAGAAAATC 58.436 37.037 0.00 0.00 35.38 2.17
22 23 8.055181 TGCATTGGAAGAGGTCTAATAGAAAAT 58.945 33.333 0.00 0.00 35.38 1.82
23 24 7.402054 TGCATTGGAAGAGGTCTAATAGAAAA 58.598 34.615 0.00 0.00 35.38 2.29
24 25 6.957631 TGCATTGGAAGAGGTCTAATAGAAA 58.042 36.000 0.00 0.00 35.38 2.52
25 26 6.560003 TGCATTGGAAGAGGTCTAATAGAA 57.440 37.500 0.00 0.00 35.38 2.10
26 27 6.560003 TTGCATTGGAAGAGGTCTAATAGA 57.440 37.500 0.00 0.00 35.38 1.98
27 28 6.261826 CCTTTGCATTGGAAGAGGTCTAATAG 59.738 42.308 0.00 0.00 35.38 1.73
28 29 6.122277 CCTTTGCATTGGAAGAGGTCTAATA 58.878 40.000 0.00 0.00 35.38 0.98
29 30 4.952335 CCTTTGCATTGGAAGAGGTCTAAT 59.048 41.667 0.00 0.00 37.90 1.73
30 31 4.202567 ACCTTTGCATTGGAAGAGGTCTAA 60.203 41.667 14.47 0.00 32.25 2.10
31 32 3.330701 ACCTTTGCATTGGAAGAGGTCTA 59.669 43.478 14.47 0.00 32.25 2.59
32 33 2.108952 ACCTTTGCATTGGAAGAGGTCT 59.891 45.455 14.47 0.61 32.25 3.85
33 34 2.229784 CACCTTTGCATTGGAAGAGGTC 59.770 50.000 16.22 0.00 35.43 3.85
34 35 2.242043 CACCTTTGCATTGGAAGAGGT 58.758 47.619 14.47 14.47 37.98 3.85
47 48 2.421424 GCACCTCATCTAAGCACCTTTG 59.579 50.000 0.00 0.00 0.00 2.77
48 49 2.307098 AGCACCTCATCTAAGCACCTTT 59.693 45.455 0.00 0.00 0.00 3.11
49 50 1.912043 AGCACCTCATCTAAGCACCTT 59.088 47.619 0.00 0.00 0.00 3.50
50 51 1.577736 AGCACCTCATCTAAGCACCT 58.422 50.000 0.00 0.00 0.00 4.00
51 52 3.118592 ACTTAGCACCTCATCTAAGCACC 60.119 47.826 8.44 0.00 43.27 5.01
52 53 3.868077 CACTTAGCACCTCATCTAAGCAC 59.132 47.826 8.44 0.00 43.27 4.40
53 54 3.679917 GCACTTAGCACCTCATCTAAGCA 60.680 47.826 8.44 0.00 43.27 3.91
54 55 2.869192 GCACTTAGCACCTCATCTAAGC 59.131 50.000 8.44 0.00 43.27 3.09
68 69 8.893727 AGTTGCTAAGGTATTTAATGCACTTAG 58.106 33.333 17.66 17.66 39.99 2.18
69 70 8.801882 AGTTGCTAAGGTATTTAATGCACTTA 57.198 30.769 0.00 1.01 0.00 2.24
70 71 7.393234 TGAGTTGCTAAGGTATTTAATGCACTT 59.607 33.333 0.00 0.00 0.00 3.16
71 72 6.884295 TGAGTTGCTAAGGTATTTAATGCACT 59.116 34.615 0.00 0.00 0.00 4.40
72 73 7.083875 TGAGTTGCTAAGGTATTTAATGCAC 57.916 36.000 0.00 0.00 0.00 4.57
73 74 7.175816 TGTTGAGTTGCTAAGGTATTTAATGCA 59.824 33.333 0.00 0.00 0.00 3.96
74 75 7.484959 GTGTTGAGTTGCTAAGGTATTTAATGC 59.515 37.037 0.00 0.00 0.00 3.56
75 76 7.968405 GGTGTTGAGTTGCTAAGGTATTTAATG 59.032 37.037 0.00 0.00 0.00 1.90
76 77 7.122204 GGGTGTTGAGTTGCTAAGGTATTTAAT 59.878 37.037 0.00 0.00 0.00 1.40
77 78 6.431852 GGGTGTTGAGTTGCTAAGGTATTTAA 59.568 38.462 0.00 0.00 0.00 1.52
78 79 5.941647 GGGTGTTGAGTTGCTAAGGTATTTA 59.058 40.000 0.00 0.00 0.00 1.40
79 80 4.765339 GGGTGTTGAGTTGCTAAGGTATTT 59.235 41.667 0.00 0.00 0.00 1.40
80 81 4.332828 GGGTGTTGAGTTGCTAAGGTATT 58.667 43.478 0.00 0.00 0.00 1.89
81 82 3.308188 GGGGTGTTGAGTTGCTAAGGTAT 60.308 47.826 0.00 0.00 0.00 2.73
82 83 2.039348 GGGGTGTTGAGTTGCTAAGGTA 59.961 50.000 0.00 0.00 0.00 3.08
83 84 1.202891 GGGGTGTTGAGTTGCTAAGGT 60.203 52.381 0.00 0.00 0.00 3.50
84 85 1.202879 TGGGGTGTTGAGTTGCTAAGG 60.203 52.381 0.00 0.00 0.00 2.69
85 86 2.270352 TGGGGTGTTGAGTTGCTAAG 57.730 50.000 0.00 0.00 0.00 2.18
86 87 2.738587 TTGGGGTGTTGAGTTGCTAA 57.261 45.000 0.00 0.00 0.00 3.09
87 88 2.513753 CATTGGGGTGTTGAGTTGCTA 58.486 47.619 0.00 0.00 0.00 3.49
88 89 1.331214 CATTGGGGTGTTGAGTTGCT 58.669 50.000 0.00 0.00 0.00 3.91
89 90 0.319813 GCATTGGGGTGTTGAGTTGC 60.320 55.000 0.00 0.00 0.00 4.17
90 91 1.039068 TGCATTGGGGTGTTGAGTTG 58.961 50.000 0.00 0.00 0.00 3.16
91 92 2.014010 ATGCATTGGGGTGTTGAGTT 57.986 45.000 0.00 0.00 0.00 3.01
92 93 2.621407 CCTATGCATTGGGGTGTTGAGT 60.621 50.000 18.33 0.00 0.00 3.41
93 94 2.026641 CCTATGCATTGGGGTGTTGAG 58.973 52.381 18.33 0.00 0.00 3.02
94 95 1.357420 ACCTATGCATTGGGGTGTTGA 59.643 47.619 27.42 0.00 0.00 3.18
95 96 1.477700 CACCTATGCATTGGGGTGTTG 59.522 52.381 27.42 14.47 42.80 3.33
96 97 1.851304 CACCTATGCATTGGGGTGTT 58.149 50.000 27.42 6.76 42.80 3.32
97 98 3.594453 CACCTATGCATTGGGGTGT 57.406 52.632 27.42 7.11 42.80 4.16
108 109 5.643777 AGTAACAACAAGCTAAGCACCTATG 59.356 40.000 0.00 0.00 0.00 2.23
109 110 5.805728 AGTAACAACAAGCTAAGCACCTAT 58.194 37.500 0.00 0.00 0.00 2.57
110 111 5.223449 AGTAACAACAAGCTAAGCACCTA 57.777 39.130 0.00 0.00 0.00 3.08
111 112 4.086706 AGTAACAACAAGCTAAGCACCT 57.913 40.909 0.00 0.00 0.00 4.00
112 113 5.928153 CTTAGTAACAACAAGCTAAGCACC 58.072 41.667 0.00 0.00 35.59 5.01
116 117 6.018262 TGTGTGCTTAGTAACAACAAGCTAAG 60.018 38.462 7.03 0.00 43.98 2.18
117 118 5.818336 TGTGTGCTTAGTAACAACAAGCTAA 59.182 36.000 7.03 0.00 43.98 3.09
118 119 5.361427 TGTGTGCTTAGTAACAACAAGCTA 58.639 37.500 7.03 0.00 43.98 3.32
119 120 4.196193 TGTGTGCTTAGTAACAACAAGCT 58.804 39.130 7.03 0.00 43.98 3.74
120 121 4.545823 TGTGTGCTTAGTAACAACAAGC 57.454 40.909 0.00 0.00 43.92 4.01
121 122 9.677567 AAATAATGTGTGCTTAGTAACAACAAG 57.322 29.630 0.00 0.00 0.00 3.16
133 134 8.739039 TGCTAACTCATTAAATAATGTGTGCTT 58.261 29.630 16.98 8.18 44.70 3.91
134 135 8.184192 GTGCTAACTCATTAAATAATGTGTGCT 58.816 33.333 16.98 8.69 44.70 4.40
135 136 7.432252 GGTGCTAACTCATTAAATAATGTGTGC 59.568 37.037 16.98 16.46 44.70 4.57
136 137 8.677300 AGGTGCTAACTCATTAAATAATGTGTG 58.323 33.333 16.98 9.80 44.70 3.82
137 138 8.807948 AGGTGCTAACTCATTAAATAATGTGT 57.192 30.769 12.64 12.64 46.32 3.72
144 145 9.740710 AAGACTTTAGGTGCTAACTCATTAAAT 57.259 29.630 0.00 0.00 0.00 1.40
145 146 9.569122 AAAGACTTTAGGTGCTAACTCATTAAA 57.431 29.630 0.00 0.00 0.00 1.52
146 147 9.216117 GAAAGACTTTAGGTGCTAACTCATTAA 57.784 33.333 0.00 0.00 0.00 1.40
147 148 8.372459 TGAAAGACTTTAGGTGCTAACTCATTA 58.628 33.333 0.00 0.00 0.00 1.90
148 149 7.224297 TGAAAGACTTTAGGTGCTAACTCATT 58.776 34.615 0.00 0.00 0.00 2.57
149 150 6.769512 TGAAAGACTTTAGGTGCTAACTCAT 58.230 36.000 0.00 0.00 0.00 2.90
150 151 6.169557 TGAAAGACTTTAGGTGCTAACTCA 57.830 37.500 0.00 0.00 0.00 3.41
151 152 6.651225 ACATGAAAGACTTTAGGTGCTAACTC 59.349 38.462 0.00 0.00 0.00 3.01
152 153 6.534634 ACATGAAAGACTTTAGGTGCTAACT 58.465 36.000 0.00 0.00 0.00 2.24
153 154 6.803154 ACATGAAAGACTTTAGGTGCTAAC 57.197 37.500 0.00 0.00 0.00 2.34
154 155 8.946085 CAATACATGAAAGACTTTAGGTGCTAA 58.054 33.333 0.00 0.00 0.00 3.09
155 156 7.552687 CCAATACATGAAAGACTTTAGGTGCTA 59.447 37.037 0.00 0.00 0.00 3.49
156 157 6.375455 CCAATACATGAAAGACTTTAGGTGCT 59.625 38.462 0.00 0.00 0.00 4.40
157 158 6.151144 ACCAATACATGAAAGACTTTAGGTGC 59.849 38.462 0.00 0.00 0.00 5.01
158 159 7.390440 TGACCAATACATGAAAGACTTTAGGTG 59.610 37.037 0.00 3.18 0.00 4.00
159 160 7.458397 TGACCAATACATGAAAGACTTTAGGT 58.542 34.615 0.00 2.54 0.00 3.08
160 161 7.921786 TGACCAATACATGAAAGACTTTAGG 57.078 36.000 0.00 0.00 0.00 2.69
163 164 9.480053 CAATTTGACCAATACATGAAAGACTTT 57.520 29.630 0.00 0.00 0.00 2.66
164 165 8.641541 ACAATTTGACCAATACATGAAAGACTT 58.358 29.630 0.00 0.00 0.00 3.01
165 166 8.181904 ACAATTTGACCAATACATGAAAGACT 57.818 30.769 0.00 0.00 0.00 3.24
166 167 8.816640 AACAATTTGACCAATACATGAAAGAC 57.183 30.769 0.00 0.00 0.00 3.01
167 168 9.474920 GAAACAATTTGACCAATACATGAAAGA 57.525 29.630 0.00 0.00 0.00 2.52
168 169 9.258826 TGAAACAATTTGACCAATACATGAAAG 57.741 29.630 0.00 0.00 0.00 2.62
169 170 9.775854 ATGAAACAATTTGACCAATACATGAAA 57.224 25.926 0.00 0.00 0.00 2.69
170 171 9.775854 AATGAAACAATTTGACCAATACATGAA 57.224 25.926 0.00 0.00 0.00 2.57
171 172 9.775854 AAATGAAACAATTTGACCAATACATGA 57.224 25.926 0.00 0.00 0.00 3.07
177 178 9.054922 CCACTTAAATGAAACAATTTGACCAAT 57.945 29.630 2.79 0.00 32.16 3.16
178 179 8.043710 ACCACTTAAATGAAACAATTTGACCAA 58.956 29.630 2.79 0.00 32.16 3.67
179 180 7.560368 ACCACTTAAATGAAACAATTTGACCA 58.440 30.769 2.79 0.00 32.16 4.02
180 181 8.432110 AACCACTTAAATGAAACAATTTGACC 57.568 30.769 2.79 0.00 32.16 4.02
181 182 9.701355 CAAACCACTTAAATGAAACAATTTGAC 57.299 29.630 2.79 0.00 32.16 3.18
182 183 8.394121 GCAAACCACTTAAATGAAACAATTTGA 58.606 29.630 2.79 0.00 32.16 2.69
183 184 7.643371 GGCAAACCACTTAAATGAAACAATTTG 59.357 33.333 0.00 0.00 35.26 2.32
184 185 7.555914 AGGCAAACCACTTAAATGAAACAATTT 59.444 29.630 0.00 0.00 39.06 1.82
185 186 7.053498 AGGCAAACCACTTAAATGAAACAATT 58.947 30.769 0.00 0.00 39.06 2.32
186 187 6.591001 AGGCAAACCACTTAAATGAAACAAT 58.409 32.000 0.00 0.00 39.06 2.71
187 188 5.983540 AGGCAAACCACTTAAATGAAACAA 58.016 33.333 0.00 0.00 39.06 2.83
188 189 5.606348 AGGCAAACCACTTAAATGAAACA 57.394 34.783 0.00 0.00 39.06 2.83
189 190 6.156519 CCTAGGCAAACCACTTAAATGAAAC 58.843 40.000 0.00 0.00 39.06 2.78
190 191 5.836358 ACCTAGGCAAACCACTTAAATGAAA 59.164 36.000 9.30 0.00 39.06 2.69
191 192 5.390387 ACCTAGGCAAACCACTTAAATGAA 58.610 37.500 9.30 0.00 39.06 2.57
192 193 4.993028 ACCTAGGCAAACCACTTAAATGA 58.007 39.130 9.30 0.00 39.06 2.57
193 194 5.722021 AACCTAGGCAAACCACTTAAATG 57.278 39.130 9.30 0.00 39.06 2.32
194 195 6.740944 AAAACCTAGGCAAACCACTTAAAT 57.259 33.333 9.30 0.00 39.06 1.40
195 196 6.342111 CAAAAACCTAGGCAAACCACTTAAA 58.658 36.000 9.30 0.00 39.06 1.52
196 197 5.682730 GCAAAAACCTAGGCAAACCACTTAA 60.683 40.000 9.30 0.00 39.06 1.85
197 198 4.202172 GCAAAAACCTAGGCAAACCACTTA 60.202 41.667 9.30 0.00 39.06 2.24
198 199 3.431626 GCAAAAACCTAGGCAAACCACTT 60.432 43.478 9.30 0.00 39.06 3.16
199 200 2.102420 GCAAAAACCTAGGCAAACCACT 59.898 45.455 9.30 0.00 39.06 4.00
200 201 2.479837 GCAAAAACCTAGGCAAACCAC 58.520 47.619 9.30 0.00 39.06 4.16
201 202 1.067821 CGCAAAAACCTAGGCAAACCA 59.932 47.619 9.30 0.00 39.06 3.67
202 203 1.778334 CGCAAAAACCTAGGCAAACC 58.222 50.000 9.30 0.00 0.00 3.27
203 204 1.136690 GCGCAAAAACCTAGGCAAAC 58.863 50.000 9.30 0.00 0.00 2.93
204 205 0.032815 GGCGCAAAAACCTAGGCAAA 59.967 50.000 10.83 0.00 0.00 3.68
205 206 0.825840 AGGCGCAAAAACCTAGGCAA 60.826 50.000 10.83 0.00 33.38 4.52
206 207 0.037017 TAGGCGCAAAAACCTAGGCA 59.963 50.000 10.83 0.00 37.50 4.75
207 208 2.862738 TAGGCGCAAAAACCTAGGC 58.137 52.632 10.83 0.00 37.50 3.93
217 218 5.716097 GGAAAAACCAATGCTAGGCGCAA 62.716 47.826 10.83 0.00 45.00 4.85
218 219 4.289630 GGAAAAACCAATGCTAGGCGCA 62.290 50.000 10.83 0.00 45.54 6.09
219 220 1.629013 GAAAAACCAATGCTAGGCGC 58.371 50.000 0.00 0.00 39.77 6.53
220 221 1.818674 AGGAAAAACCAATGCTAGGCG 59.181 47.619 0.00 0.00 42.04 5.52
221 222 2.094026 CCAGGAAAAACCAATGCTAGGC 60.094 50.000 0.00 0.00 42.04 3.93
222 223 2.497273 CCCAGGAAAAACCAATGCTAGG 59.503 50.000 0.00 0.00 42.04 3.02
223 224 3.430453 TCCCAGGAAAAACCAATGCTAG 58.570 45.455 0.00 0.00 42.04 3.42
224 225 3.534357 TCCCAGGAAAAACCAATGCTA 57.466 42.857 0.00 0.00 42.04 3.49
225 226 2.397044 TCCCAGGAAAAACCAATGCT 57.603 45.000 0.00 0.00 42.04 3.79
226 227 2.566724 TGATCCCAGGAAAAACCAATGC 59.433 45.455 0.00 0.00 42.04 3.56
227 228 3.055891 GGTGATCCCAGGAAAAACCAATG 60.056 47.826 9.70 0.00 42.04 2.82
228 229 3.173151 GGTGATCCCAGGAAAAACCAAT 58.827 45.455 9.70 0.00 42.04 3.16
229 230 2.091055 TGGTGATCCCAGGAAAAACCAA 60.091 45.455 13.31 2.02 38.72 3.67
230 231 1.501170 TGGTGATCCCAGGAAAAACCA 59.499 47.619 12.19 12.19 38.72 3.67
231 232 2.302587 TGGTGATCCCAGGAAAAACC 57.697 50.000 8.25 8.25 38.72 3.27
232 233 3.641436 ACTTTGGTGATCCCAGGAAAAAC 59.359 43.478 3.55 0.00 46.31 2.43
233 234 3.922375 ACTTTGGTGATCCCAGGAAAAA 58.078 40.909 3.55 0.00 46.31 1.94
234 235 3.611025 ACTTTGGTGATCCCAGGAAAA 57.389 42.857 3.55 0.00 46.31 2.29
235 236 4.946160 ATACTTTGGTGATCCCAGGAAA 57.054 40.909 3.55 0.00 46.31 3.13
236 237 4.540099 AGAATACTTTGGTGATCCCAGGAA 59.460 41.667 3.55 0.00 46.31 3.36
237 238 4.111577 AGAATACTTTGGTGATCCCAGGA 58.888 43.478 3.55 0.00 46.31 3.86
238 239 4.164988 AGAGAATACTTTGGTGATCCCAGG 59.835 45.833 3.55 4.27 46.31 4.45
239 240 5.130145 AGAGAGAATACTTTGGTGATCCCAG 59.870 44.000 3.55 0.00 46.31 4.45
240 241 5.032846 AGAGAGAATACTTTGGTGATCCCA 58.967 41.667 0.00 0.00 43.27 4.37
241 242 5.454045 GGAGAGAGAATACTTTGGTGATCCC 60.454 48.000 0.00 0.00 0.00 3.85
242 243 5.365314 AGGAGAGAGAATACTTTGGTGATCC 59.635 44.000 0.00 0.00 0.00 3.36
243 244 6.323739 AGAGGAGAGAGAATACTTTGGTGATC 59.676 42.308 0.00 0.00 0.00 2.92
244 245 6.201591 AGAGGAGAGAGAATACTTTGGTGAT 58.798 40.000 0.00 0.00 0.00 3.06
245 246 5.584913 AGAGGAGAGAGAATACTTTGGTGA 58.415 41.667 0.00 0.00 0.00 4.02
246 247 5.930837 AGAGGAGAGAGAATACTTTGGTG 57.069 43.478 0.00 0.00 0.00 4.17
247 248 6.943899 AAAGAGGAGAGAGAATACTTTGGT 57.056 37.500 0.00 0.00 0.00 3.67
248 249 9.898152 ATTTAAAGAGGAGAGAGAATACTTTGG 57.102 33.333 0.00 0.00 0.00 3.28
255 256 7.984617 GCACTACATTTAAAGAGGAGAGAGAAT 59.015 37.037 9.09 0.00 0.00 2.40
256 257 7.324178 GCACTACATTTAAAGAGGAGAGAGAA 58.676 38.462 9.09 0.00 0.00 2.87
257 258 6.127310 GGCACTACATTTAAAGAGGAGAGAGA 60.127 42.308 9.09 0.00 0.00 3.10
258 259 6.045955 GGCACTACATTTAAAGAGGAGAGAG 58.954 44.000 9.09 1.85 0.00 3.20
259 260 5.483937 TGGCACTACATTTAAAGAGGAGAGA 59.516 40.000 9.09 0.00 0.00 3.10
260 261 5.734720 TGGCACTACATTTAAAGAGGAGAG 58.265 41.667 9.09 3.53 0.00 3.20
261 262 5.755409 TGGCACTACATTTAAAGAGGAGA 57.245 39.130 9.09 0.00 0.00 3.71
262 263 5.882557 ACATGGCACTACATTTAAAGAGGAG 59.117 40.000 0.00 0.00 0.00 3.69
263 264 5.815581 ACATGGCACTACATTTAAAGAGGA 58.184 37.500 0.00 0.00 0.00 3.71
264 265 5.647658 TGACATGGCACTACATTTAAAGAGG 59.352 40.000 0.00 0.00 0.00 3.69
265 266 6.741992 TGACATGGCACTACATTTAAAGAG 57.258 37.500 0.00 0.00 0.00 2.85
266 267 7.701539 AATGACATGGCACTACATTTAAAGA 57.298 32.000 1.45 0.00 0.00 2.52
267 268 8.761575 AAAATGACATGGCACTACATTTAAAG 57.238 30.769 1.45 0.00 39.26 1.85
291 292 9.348290 TGCTAAGCATTGCCACATAAGTGAAAA 62.348 37.037 4.70 0.00 40.07 2.29
292 293 7.966189 TGCTAAGCATTGCCACATAAGTGAAA 61.966 38.462 4.70 0.00 40.07 2.69
293 294 6.553722 TGCTAAGCATTGCCACATAAGTGAA 61.554 40.000 4.70 0.00 40.07 3.18
294 295 5.107118 TGCTAAGCATTGCCACATAAGTGA 61.107 41.667 4.70 0.00 40.07 3.41
295 296 3.129113 TGCTAAGCATTGCCACATAAGTG 59.871 43.478 4.70 0.00 38.46 3.16
296 297 3.129287 GTGCTAAGCATTGCCACATAAGT 59.871 43.478 4.70 0.00 41.91 2.24
297 298 3.489738 GGTGCTAAGCATTGCCACATAAG 60.490 47.826 14.81 2.85 41.91 1.73
298 299 2.426738 GGTGCTAAGCATTGCCACATAA 59.573 45.455 14.81 0.00 41.91 1.90
299 300 2.023673 GGTGCTAAGCATTGCCACATA 58.976 47.619 14.81 1.08 41.91 2.29
300 301 0.819582 GGTGCTAAGCATTGCCACAT 59.180 50.000 14.81 0.06 41.91 3.21
301 302 0.251297 AGGTGCTAAGCATTGCCACA 60.251 50.000 14.81 3.08 41.91 4.17
302 303 0.171903 CAGGTGCTAAGCATTGCCAC 59.828 55.000 4.70 6.14 41.91 5.01
303 304 0.251297 ACAGGTGCTAAGCATTGCCA 60.251 50.000 4.70 0.00 41.91 4.92
304 305 0.890683 AACAGGTGCTAAGCATTGCC 59.109 50.000 4.70 0.00 41.91 4.52
305 306 1.541147 TGAACAGGTGCTAAGCATTGC 59.459 47.619 0.00 0.00 41.91 3.56
306 307 2.413239 CGTGAACAGGTGCTAAGCATTG 60.413 50.000 0.00 0.00 41.91 2.82
307 308 1.806542 CGTGAACAGGTGCTAAGCATT 59.193 47.619 0.00 0.00 41.91 3.56
308 309 1.442769 CGTGAACAGGTGCTAAGCAT 58.557 50.000 0.00 0.00 41.91 3.79
309 310 0.602638 CCGTGAACAGGTGCTAAGCA 60.603 55.000 0.00 0.00 35.60 3.91
310 311 0.602905 ACCGTGAACAGGTGCTAAGC 60.603 55.000 0.00 0.00 41.10 3.09
311 312 3.606886 ACCGTGAACAGGTGCTAAG 57.393 52.632 0.00 0.00 41.10 2.18
317 318 1.768684 ATGCTCCACCGTGAACAGGT 61.769 55.000 0.00 0.00 43.97 4.00
318 319 0.606401 AATGCTCCACCGTGAACAGG 60.606 55.000 0.00 0.00 0.00 4.00
319 320 0.518636 CAATGCTCCACCGTGAACAG 59.481 55.000 0.00 0.00 0.00 3.16
320 321 0.888736 CCAATGCTCCACCGTGAACA 60.889 55.000 0.00 0.00 0.00 3.18
321 322 1.586154 CCCAATGCTCCACCGTGAAC 61.586 60.000 0.00 0.00 0.00 3.18
322 323 1.303236 CCCAATGCTCCACCGTGAA 60.303 57.895 0.00 0.00 0.00 3.18
323 324 2.184020 CTCCCAATGCTCCACCGTGA 62.184 60.000 0.00 0.00 0.00 4.35
324 325 1.746615 CTCCCAATGCTCCACCGTG 60.747 63.158 0.00 0.00 0.00 4.94
325 326 2.671070 CTCCCAATGCTCCACCGT 59.329 61.111 0.00 0.00 0.00 4.83
326 327 2.124570 CCTCCCAATGCTCCACCG 60.125 66.667 0.00 0.00 0.00 4.94
327 328 2.276740 CCCTCCCAATGCTCCACC 59.723 66.667 0.00 0.00 0.00 4.61
328 329 2.440980 GCCCTCCCAATGCTCCAC 60.441 66.667 0.00 0.00 0.00 4.02
329 330 3.743017 GGCCCTCCCAATGCTCCA 61.743 66.667 0.00 0.00 0.00 3.86
330 331 1.645402 TAAGGCCCTCCCAATGCTCC 61.645 60.000 0.00 0.00 35.39 4.70
331 332 0.179006 CTAAGGCCCTCCCAATGCTC 60.179 60.000 0.00 0.00 35.39 4.26
332 333 1.649271 CCTAAGGCCCTCCCAATGCT 61.649 60.000 0.00 0.00 35.39 3.79
333 334 1.152673 CCTAAGGCCCTCCCAATGC 60.153 63.158 0.00 0.00 35.39 3.56
334 335 0.993509 TCCCTAAGGCCCTCCCAATG 60.994 60.000 0.00 0.00 35.39 2.82
335 336 0.254107 TTCCCTAAGGCCCTCCCAAT 60.254 55.000 0.00 0.00 35.39 3.16
336 337 0.254107 ATTCCCTAAGGCCCTCCCAA 60.254 55.000 0.00 0.00 35.39 4.12
337 338 0.254107 AATTCCCTAAGGCCCTCCCA 60.254 55.000 0.00 0.00 35.39 4.37
338 339 1.829138 TAATTCCCTAAGGCCCTCCC 58.171 55.000 0.00 0.00 0.00 4.30
339 340 3.054287 GCTATAATTCCCTAAGGCCCTCC 60.054 52.174 0.00 0.00 0.00 4.30
340 341 3.847184 AGCTATAATTCCCTAAGGCCCTC 59.153 47.826 0.00 0.00 0.00 4.30
341 342 3.888209 AGCTATAATTCCCTAAGGCCCT 58.112 45.455 0.00 0.00 0.00 5.19
342 343 4.659529 AAGCTATAATTCCCTAAGGCCC 57.340 45.455 0.00 0.00 0.00 5.80
343 344 6.239317 CCAAAAAGCTATAATTCCCTAAGGCC 60.239 42.308 0.00 0.00 0.00 5.19
344 345 6.239317 CCCAAAAAGCTATAATTCCCTAAGGC 60.239 42.308 0.00 0.00 0.00 4.35
345 346 6.239317 GCCCAAAAAGCTATAATTCCCTAAGG 60.239 42.308 0.00 0.00 0.00 2.69
346 347 6.323739 TGCCCAAAAAGCTATAATTCCCTAAG 59.676 38.462 0.00 0.00 0.00 2.18
367 368 0.695347 AGCATATCTAGCCCTTGCCC 59.305 55.000 0.00 0.00 38.69 5.36
587 594 7.920160 TGTTGTAATTAAGTGCATCTGATCA 57.080 32.000 0.00 0.00 0.00 2.92
588 595 9.624697 TTTTGTTGTAATTAAGTGCATCTGATC 57.375 29.630 0.00 0.00 0.00 2.92
594 604 8.090214 AGCTCATTTTGTTGTAATTAAGTGCAT 58.910 29.630 0.00 0.00 0.00 3.96
676 692 1.154205 CGAGCCAATACCTTGAGCCG 61.154 60.000 0.00 0.00 34.04 5.52
716 732 5.583457 CCTCTAAAACTTATGTACAACGGGG 59.417 44.000 0.00 0.00 0.00 5.73
751 770 2.968675 ACGTTTGTAGTGATGGCTACC 58.031 47.619 0.00 0.00 40.29 3.18
770 789 3.427233 CGTAGCAGTGGTGGAGTACTAAC 60.427 52.174 4.76 0.00 0.00 2.34
794 813 2.716217 ACTGCTGAATTACTCCTTGCC 58.284 47.619 0.00 0.00 0.00 4.52
808 827 0.599991 TGTACTGGCACGAACTGCTG 60.600 55.000 0.00 0.00 46.25 4.41
827 846 0.179009 TGAGCTGCAAACTGAGCCTT 60.179 50.000 1.02 0.00 35.69 4.35
859 878 9.579768 TCACGTACTACTGTACAAAAGTTTTTA 57.420 29.630 13.35 0.00 46.88 1.52
868 887 6.330004 TCCATTTCACGTACTACTGTACAA 57.670 37.500 0.00 0.00 46.88 2.41
869 888 5.963176 TCCATTTCACGTACTACTGTACA 57.037 39.130 0.00 0.00 46.88 2.90
870 889 6.385033 ACTTCCATTTCACGTACTACTGTAC 58.615 40.000 0.00 0.00 44.03 2.90
871 890 6.579666 ACTTCCATTTCACGTACTACTGTA 57.420 37.500 0.00 0.00 0.00 2.74
872 891 5.464030 ACTTCCATTTCACGTACTACTGT 57.536 39.130 0.00 0.00 0.00 3.55
873 892 6.780706 AAACTTCCATTTCACGTACTACTG 57.219 37.500 0.00 0.00 0.00 2.74
874 893 7.496591 TCAAAAACTTCCATTTCACGTACTACT 59.503 33.333 0.00 0.00 0.00 2.57
875 894 7.632721 TCAAAAACTTCCATTTCACGTACTAC 58.367 34.615 0.00 0.00 0.00 2.73
876 895 7.789273 TCAAAAACTTCCATTTCACGTACTA 57.211 32.000 0.00 0.00 0.00 1.82
914 934 7.296628 TGGATGGCAGTTTAAACTTGTATTT 57.703 32.000 18.25 2.02 37.08 1.40
931 951 2.483538 CCGGGAAAATCATTTGGATGGC 60.484 50.000 0.00 0.00 36.02 4.40
960 980 3.726517 CGCTCGTGCCAAGTTGGG 61.727 66.667 23.36 7.16 38.19 4.12
1013 1033 1.065418 GCCTGCTGCTACCTTTCCTTA 60.065 52.381 0.00 0.00 36.87 2.69
1023 1043 0.391966 CTAGCTGATGCCTGCTGCTA 59.608 55.000 0.00 0.00 45.40 3.49
1166 1186 5.932619 TCGGAGAGAGAGGAGATCTATAG 57.067 47.826 0.00 0.00 38.84 1.31
1218 1238 1.613630 CTAGGTGCCTGGACTGGGT 60.614 63.158 0.00 0.00 0.00 4.51
2330 2362 1.949449 ATCACTCCTCCCCTCCCCT 60.949 63.158 0.00 0.00 0.00 4.79
2331 2363 1.768077 CATCACTCCTCCCCTCCCC 60.768 68.421 0.00 0.00 0.00 4.81
2454 2489 7.496704 TGTAATAGTCGTACAAAGTTAAGCG 57.503 36.000 0.00 0.00 0.00 4.68
2515 2552 4.638865 GCCACTAACGATTACAAATTCCCT 59.361 41.667 0.00 0.00 0.00 4.20
2529 2566 7.709269 ACATTAGTAATACATGCCACTAACG 57.291 36.000 9.77 6.21 36.57 3.18
2586 2623 4.464597 GGAATACAAAACCATGGGCTGTAA 59.535 41.667 18.09 5.89 0.00 2.41
2634 2671 6.254589 GCGTAATCTCTGCATAATCATACTCC 59.745 42.308 0.00 0.00 0.00 3.85
2635 2672 6.021074 CGCGTAATCTCTGCATAATCATACTC 60.021 42.308 0.00 0.00 0.00 2.59
2636 2673 5.802451 CGCGTAATCTCTGCATAATCATACT 59.198 40.000 0.00 0.00 0.00 2.12
2656 2693 7.687005 TCATTTTTAAGAAAAATTCACGCGT 57.313 28.000 5.58 5.58 46.01 6.01
2673 2710 7.427989 AAGCAAGGGATGTATGATCATTTTT 57.572 32.000 14.65 0.00 0.00 1.94
2678 2715 4.907269 TCCTAAGCAAGGGATGTATGATCA 59.093 41.667 0.00 0.00 46.55 2.92
2755 2844 3.506067 CCTTTCCTCTGGCGTACAAAATT 59.494 43.478 0.00 0.00 0.00 1.82
2776 2865 0.853419 GTAATTCTACAGCGCTCGCC 59.147 55.000 7.13 0.00 43.17 5.54
2788 2877 5.782845 AGAACTCCTCACTTCCTGTAATTCT 59.217 40.000 0.00 0.00 0.00 2.40
2816 2905 7.442364 TCCTCAGAACTTGTACATTTCTTTCTG 59.558 37.037 14.64 16.39 39.78 3.02
2818 2907 7.730364 TCCTCAGAACTTGTACATTTCTTTC 57.270 36.000 14.64 6.10 0.00 2.62
2828 2917 2.742053 GCGCAAATCCTCAGAACTTGTA 59.258 45.455 0.30 0.00 0.00 2.41
2836 2925 1.699656 CTCACGGCGCAAATCCTCAG 61.700 60.000 10.83 0.00 0.00 3.35
2858 2947 1.774110 TTTGCCCTTCAACAGCTTCA 58.226 45.000 0.00 0.00 33.73 3.02
2991 3084 1.602323 TTGGGAAAAGATGCGGCGT 60.602 52.632 9.37 0.00 0.00 5.68
2995 3088 0.729140 GCGTGTTGGGAAAAGATGCG 60.729 55.000 0.00 0.00 0.00 4.73
3019 3112 6.010219 TGTAAATTTCCTCCTCCTTTTCCAG 58.990 40.000 0.00 0.00 0.00 3.86
3102 3195 0.512518 TCTTCATTGTTGCACGCTCG 59.487 50.000 0.00 0.00 0.00 5.03
3105 3198 1.055338 GCTTCTTCATTGTTGCACGC 58.945 50.000 0.00 0.00 0.00 5.34
3112 3205 4.219288 GGACCAAAGATGCTTCTTCATTGT 59.781 41.667 14.62 9.62 41.42 2.71
3114 3207 3.441572 CGGACCAAAGATGCTTCTTCATT 59.558 43.478 14.62 2.89 41.42 2.57
3135 3228 2.128035 GAACCGGATGATTAGACTGCG 58.872 52.381 9.46 0.00 0.00 5.18
3154 3247 4.938028 TGTACTCCACTACCACCATTAGA 58.062 43.478 0.00 0.00 0.00 2.10
3183 3276 5.272405 AGAAGGACAGAAGGGAGTACTAA 57.728 43.478 0.00 0.00 0.00 2.24
3188 3281 4.090819 GAGTAAGAAGGACAGAAGGGAGT 58.909 47.826 0.00 0.00 0.00 3.85
3191 3284 3.368948 GCAGAGTAAGAAGGACAGAAGGG 60.369 52.174 0.00 0.00 0.00 3.95
3193 3286 4.527509 TGCAGAGTAAGAAGGACAGAAG 57.472 45.455 0.00 0.00 0.00 2.85
3198 3291 7.056844 ACCTAATATGCAGAGTAAGAAGGAC 57.943 40.000 2.56 0.00 0.00 3.85
3201 3294 8.723942 ACAAACCTAATATGCAGAGTAAGAAG 57.276 34.615 0.00 0.00 0.00 2.85
3202 3295 8.540388 AGACAAACCTAATATGCAGAGTAAGAA 58.460 33.333 0.00 0.00 0.00 2.52
3204 3297 9.817809 TTAGACAAACCTAATATGCAGAGTAAG 57.182 33.333 0.00 0.00 0.00 2.34
3206 3299 9.817809 CTTTAGACAAACCTAATATGCAGAGTA 57.182 33.333 0.00 0.00 0.00 2.59
3207 3300 8.322091 ACTTTAGACAAACCTAATATGCAGAGT 58.678 33.333 0.00 0.00 0.00 3.24
3208 3301 8.723942 ACTTTAGACAAACCTAATATGCAGAG 57.276 34.615 0.00 0.00 0.00 3.35
3209 3302 8.318412 TGACTTTAGACAAACCTAATATGCAGA 58.682 33.333 0.00 0.00 0.00 4.26
3210 3303 8.492673 TGACTTTAGACAAACCTAATATGCAG 57.507 34.615 0.00 0.00 0.00 4.41
3211 3304 8.856153 TTGACTTTAGACAAACCTAATATGCA 57.144 30.769 0.00 0.00 0.00 3.96
3212 3305 9.937175 GATTGACTTTAGACAAACCTAATATGC 57.063 33.333 0.00 0.00 33.89 3.14
3216 3309 9.965902 ATGAGATTGACTTTAGACAAACCTAAT 57.034 29.630 0.00 0.00 33.89 1.73
3217 3310 9.793259 AATGAGATTGACTTTAGACAAACCTAA 57.207 29.630 0.00 0.00 33.89 2.69
3218 3311 9.436957 GAATGAGATTGACTTTAGACAAACCTA 57.563 33.333 0.00 0.00 33.89 3.08
3219 3312 7.939039 TGAATGAGATTGACTTTAGACAAACCT 59.061 33.333 0.00 0.89 33.89 3.50
3220 3313 8.099364 TGAATGAGATTGACTTTAGACAAACC 57.901 34.615 0.00 0.00 33.89 3.27
3221 3314 9.387123 GTTGAATGAGATTGACTTTAGACAAAC 57.613 33.333 0.00 0.00 33.89 2.93
3222 3315 9.342308 AGTTGAATGAGATTGACTTTAGACAAA 57.658 29.630 0.00 0.00 33.89 2.83
3223 3316 8.908786 AGTTGAATGAGATTGACTTTAGACAA 57.091 30.769 0.00 0.00 34.59 3.18
3224 3317 8.908786 AAGTTGAATGAGATTGACTTTAGACA 57.091 30.769 0.00 0.00 0.00 3.41
3225 3318 9.604626 CAAAGTTGAATGAGATTGACTTTAGAC 57.395 33.333 0.00 0.00 35.36 2.59
3226 3319 9.559732 TCAAAGTTGAATGAGATTGACTTTAGA 57.440 29.630 0.00 0.00 35.36 2.10
3229 3322 8.853126 TGATCAAAGTTGAATGAGATTGACTTT 58.147 29.630 0.00 0.00 41.13 2.66
3230 3323 8.400184 TGATCAAAGTTGAATGAGATTGACTT 57.600 30.769 0.00 0.00 41.13 3.01
3231 3324 7.991084 TGATCAAAGTTGAATGAGATTGACT 57.009 32.000 0.00 0.00 41.13 3.41
3232 3325 8.670804 CTTGATCAAAGTTGAATGAGATTGAC 57.329 34.615 9.88 0.00 41.13 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.