Multiple sequence alignment - TraesCS3A01G104100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G104100 chr3A 100.000 2882 0 0 1 2882 67361600 67358719 0.000000e+00 5323.0
1 TraesCS3A01G104100 chr3A 100.000 31 0 0 1944 1974 127274158 127274128 1.120000e-04 58.4
2 TraesCS3A01G104100 chr3B 83.994 1968 178 64 64 1954 92595955 92594048 0.000000e+00 1762.0
3 TraesCS3A01G104100 chr3B 89.785 558 54 3 2089 2644 92594051 92593495 0.000000e+00 712.0
4 TraesCS3A01G104100 chr3B 100.000 31 0 0 1944 1974 172450953 172450923 1.120000e-04 58.4
5 TraesCS3A01G104100 chr3D 88.079 1510 96 32 1063 2551 58399367 58397921 0.000000e+00 1714.0
6 TraesCS3A01G104100 chr3D 90.046 1095 70 22 1 1067 58400484 58399401 0.000000e+00 1382.0
7 TraesCS3A01G104100 chr3D 100.000 31 0 0 1944 1974 120315222 120315192 1.120000e-04 58.4
8 TraesCS3A01G104100 chr7D 83.471 242 14 5 2653 2878 301322962 301322731 4.870000e-48 202.0
9 TraesCS3A01G104100 chr1B 82.645 242 15 8 2653 2878 101216141 101216371 3.790000e-44 189.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G104100 chr3A 67358719 67361600 2881 True 5323 5323 100.0000 1 2882 1 chr3A.!!$R1 2881
1 TraesCS3A01G104100 chr3B 92593495 92595955 2460 True 1237 1762 86.8895 64 2644 2 chr3B.!!$R2 2580
2 TraesCS3A01G104100 chr3D 58397921 58400484 2563 True 1548 1714 89.0625 1 2551 2 chr3D.!!$R2 2550

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
900 935 0.107831 TTGGGTCAGACCAAGAACGG 59.892 55.0 21.75 0.0 45.19 4.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2776 2904 0.033228 GCCACCCGAGATCTGATCTG 59.967 60.0 24.04 15.24 40.38 2.9 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 72 7.532682 TCCACAAAGAACTTTTTGTATTTGC 57.467 32.000 10.94 0.00 46.49 3.68
74 76 6.809196 ACAAAGAACTTTTTGTATTTGCGACA 59.191 30.769 2.56 0.00 46.40 4.35
86 88 6.938542 TGTATTTGCGACATTTTTGGAAAAC 58.061 32.000 0.00 0.00 32.99 2.43
87 89 6.535150 TGTATTTGCGACATTTTTGGAAAACA 59.465 30.769 0.00 0.00 32.99 2.83
125 127 9.299963 TGTATTCCTGAATATTTTGCAAAATCG 57.700 29.630 34.40 20.02 39.24 3.34
134 136 7.721286 ATATTTTGCAAAATCGGAAACACAA 57.279 28.000 34.40 17.34 39.24 3.33
166 168 7.698836 ATTTTCAAACATTTTCTGAAGTCGG 57.301 32.000 0.00 0.00 31.11 4.79
236 241 9.447157 TCCAGAAACAACTTTTTGAAATTTGAT 57.553 25.926 0.00 0.00 36.48 2.57
570 600 6.128769 TGCGCTCATTTTTCAAATTCATGAAG 60.129 34.615 14.54 0.40 40.21 3.02
576 606 9.835389 TCATTTTTCAAATTCATGAAGTCCTTT 57.165 25.926 14.54 6.61 40.21 3.11
698 730 8.497554 CGAAATCATGAACAAATTTTCCAACAT 58.502 29.630 0.00 0.00 0.00 2.71
753 785 6.702972 TTTGAATGCACGAACATATTTTGG 57.297 33.333 0.00 0.00 0.00 3.28
784 816 4.092091 ACATTTCTCAAAGTCGCGAAGATC 59.908 41.667 12.06 0.00 0.00 2.75
789 821 4.395231 TCTCAAAGTCGCGAAGATCTTCTA 59.605 41.667 28.28 14.06 37.44 2.10
797 829 3.118809 CGCGAAGATCTTCTAGAAATCGC 59.881 47.826 28.28 23.56 43.59 4.58
798 830 3.427193 GCGAAGATCTTCTAGAAATCGCC 59.573 47.826 28.28 16.42 42.45 5.54
838 870 4.793216 GCGAATAGTTTGCGAATTCACAAT 59.207 37.500 9.58 0.00 31.37 2.71
839 871 5.963004 GCGAATAGTTTGCGAATTCACAATA 59.037 36.000 9.58 1.52 31.37 1.90
883 918 2.927429 TGAATGTCCGCGAACATTTTG 58.073 42.857 24.72 0.00 46.99 2.44
884 919 2.250188 GAATGTCCGCGAACATTTTGG 58.750 47.619 24.72 0.00 46.99 3.28
886 921 0.820074 TGTCCGCGAACATTTTGGGT 60.820 50.000 8.23 0.00 0.00 4.51
887 922 0.109919 GTCCGCGAACATTTTGGGTC 60.110 55.000 8.23 0.00 0.00 4.46
888 923 0.535328 TCCGCGAACATTTTGGGTCA 60.535 50.000 8.23 0.00 0.00 4.02
889 924 0.109781 CCGCGAACATTTTGGGTCAG 60.110 55.000 8.23 0.00 0.00 3.51
890 925 0.871722 CGCGAACATTTTGGGTCAGA 59.128 50.000 0.00 0.00 0.00 3.27
891 926 1.399727 CGCGAACATTTTGGGTCAGAC 60.400 52.381 0.00 0.00 0.00 3.51
893 928 2.226330 CGAACATTTTGGGTCAGACCA 58.774 47.619 21.75 4.82 41.02 4.02
900 935 0.107831 TTGGGTCAGACCAAGAACGG 59.892 55.000 21.75 0.00 45.19 4.44
953 990 0.889186 TTGCTCCCCTTTGCGAGTTC 60.889 55.000 0.00 0.00 0.00 3.01
979 1016 9.186323 CGTCACTCTGTTCCATAAAATATCTAG 57.814 37.037 0.00 0.00 0.00 2.43
1196 1276 3.753294 TCCAACTGGTCTTCACTCTTC 57.247 47.619 0.00 0.00 36.34 2.87
1226 1306 0.179006 CCAGCCCAGCTTATTCCCTC 60.179 60.000 0.00 0.00 36.40 4.30
1227 1307 0.842635 CAGCCCAGCTTATTCCCTCT 59.157 55.000 0.00 0.00 36.40 3.69
1245 1325 1.281867 TCTTCCACGCTTCCATTCCAT 59.718 47.619 0.00 0.00 0.00 3.41
1257 1337 2.086869 CCATTCCATCACCACACTGAC 58.913 52.381 0.00 0.00 0.00 3.51
1338 1423 2.183046 GTCTGCTGCCTCCTCGTC 59.817 66.667 0.00 0.00 0.00 4.20
1383 1468 2.811317 GAGCTTCCGACGCAGGTG 60.811 66.667 0.00 0.00 0.00 4.00
1392 1477 2.918802 ACGCAGGTGGTACCCGAA 60.919 61.111 10.07 0.00 39.75 4.30
1403 1488 1.909781 TACCCGAAGCCGTTGACCT 60.910 57.895 0.00 0.00 0.00 3.85
1405 1490 2.434359 CCGAAGCCGTTGACCTCC 60.434 66.667 0.00 0.00 0.00 4.30
1411 1496 3.636231 CCGTTGACCTCCTGGCCA 61.636 66.667 4.71 4.71 36.63 5.36
1482 1567 1.442769 CGACCAAAGTCCACTCCATG 58.557 55.000 0.00 0.00 40.12 3.66
1483 1568 1.001974 CGACCAAAGTCCACTCCATGA 59.998 52.381 0.00 0.00 40.12 3.07
1484 1569 2.355108 CGACCAAAGTCCACTCCATGAT 60.355 50.000 0.00 0.00 40.12 2.45
1625 1710 2.097038 CAGCGTTGAAGAGCGAGGG 61.097 63.158 0.00 0.00 38.61 4.30
1719 1813 3.200825 ACGAGGACAATGAGAATGGGATT 59.799 43.478 0.00 0.00 0.00 3.01
1759 1853 4.934144 CGCGTCGCTTCTGAATTC 57.066 55.556 16.36 0.00 0.00 2.17
1760 1854 2.363807 CGCGTCGCTTCTGAATTCT 58.636 52.632 16.36 0.00 0.00 2.40
1783 1877 2.516930 ATCAATCTTGGCCGCCCG 60.517 61.111 7.03 0.00 0.00 6.13
1796 1890 2.562912 GCCCGTTGTGCTGTGATG 59.437 61.111 0.00 0.00 0.00 3.07
1801 1895 2.353307 CCCGTTGTGCTGTGATGTACTA 60.353 50.000 0.00 0.00 0.00 1.82
1802 1896 2.666508 CCGTTGTGCTGTGATGTACTAC 59.333 50.000 0.00 0.00 0.00 2.73
1803 1897 3.575630 CGTTGTGCTGTGATGTACTACT 58.424 45.455 0.00 0.00 0.00 2.57
1804 1898 4.380128 CCGTTGTGCTGTGATGTACTACTA 60.380 45.833 0.00 0.00 0.00 1.82
1805 1899 4.793731 CGTTGTGCTGTGATGTACTACTAG 59.206 45.833 0.00 0.00 0.00 2.57
1806 1900 5.619309 CGTTGTGCTGTGATGTACTACTAGT 60.619 44.000 0.00 0.00 0.00 2.57
1807 1901 5.977489 TGTGCTGTGATGTACTACTAGTT 57.023 39.130 0.00 0.00 0.00 2.24
1810 1904 6.645003 TGTGCTGTGATGTACTACTAGTTTTG 59.355 38.462 0.00 0.00 0.00 2.44
1812 1906 7.811236 GTGCTGTGATGTACTACTAGTTTTGTA 59.189 37.037 0.00 0.00 0.00 2.41
1850 1944 0.107654 GGGAGTTTGGCGCTCTGTAT 60.108 55.000 7.64 0.00 33.73 2.29
1852 1946 2.202566 GGAGTTTGGCGCTCTGTATAC 58.797 52.381 7.64 0.00 33.73 1.47
1853 1947 2.418197 GGAGTTTGGCGCTCTGTATACA 60.418 50.000 7.64 5.25 33.73 2.29
1854 1948 3.458189 GAGTTTGGCGCTCTGTATACAT 58.542 45.455 7.64 0.00 0.00 2.29
1855 1949 4.500887 GGAGTTTGGCGCTCTGTATACATA 60.501 45.833 7.64 0.00 33.73 2.29
1856 1950 4.369182 AGTTTGGCGCTCTGTATACATAC 58.631 43.478 7.64 0.00 0.00 2.39
1857 1951 4.099573 AGTTTGGCGCTCTGTATACATACT 59.900 41.667 7.64 1.77 34.41 2.12
1858 1952 5.301045 AGTTTGGCGCTCTGTATACATACTA 59.699 40.000 7.64 0.00 34.41 1.82
1859 1953 4.761235 TGGCGCTCTGTATACATACTAC 57.239 45.455 7.64 0.00 34.41 2.73
1860 1954 4.395625 TGGCGCTCTGTATACATACTACT 58.604 43.478 7.64 0.00 34.41 2.57
1861 1955 4.454847 TGGCGCTCTGTATACATACTACTC 59.545 45.833 7.64 0.00 34.41 2.59
1862 1956 4.142643 GGCGCTCTGTATACATACTACTCC 60.143 50.000 7.64 0.00 34.41 3.85
1938 2038 0.822121 AGCGTTTCCCCCTGTTGTTC 60.822 55.000 0.00 0.00 0.00 3.18
1971 2071 5.059833 AGTGCAGTTCTTGAGTAAAGGAAG 58.940 41.667 0.00 0.00 36.46 3.46
1974 2074 4.822350 GCAGTTCTTGAGTAAAGGAAGGTT 59.178 41.667 0.00 0.00 36.46 3.50
1975 2075 5.299531 GCAGTTCTTGAGTAAAGGAAGGTTT 59.700 40.000 0.00 0.00 36.46 3.27
1976 2076 6.183360 GCAGTTCTTGAGTAAAGGAAGGTTTT 60.183 38.462 0.00 0.00 36.46 2.43
1977 2077 7.630728 GCAGTTCTTGAGTAAAGGAAGGTTTTT 60.631 37.037 0.00 0.00 36.46 1.94
2004 2105 7.510549 TTTGAGACAATTGAGTAAAGGAAGG 57.489 36.000 13.59 0.00 0.00 3.46
2009 2110 3.806949 ATTGAGTAAAGGAAGGTGGCA 57.193 42.857 0.00 0.00 0.00 4.92
2016 2117 1.002069 AAGGAAGGTGGCATCATGGA 58.998 50.000 0.00 0.00 0.00 3.41
2019 2120 1.410648 GGAAGGTGGCATCATGGACAT 60.411 52.381 0.00 0.00 0.00 3.06
2025 2126 1.484240 TGGCATCATGGACATGTACGA 59.516 47.619 11.66 0.00 39.72 3.43
2069 2170 5.627499 TTTGAAAAGGATGATGACCTTCG 57.373 39.130 0.00 0.00 45.55 3.79
2080 2181 1.522580 GACCTTCGGCCTCTGCATC 60.523 63.158 0.00 0.00 40.13 3.91
2082 2183 1.227497 CCTTCGGCCTCTGCATCTC 60.227 63.158 0.00 0.00 40.13 2.75
2084 2185 2.009424 CTTCGGCCTCTGCATCTCGA 62.009 60.000 0.00 0.00 40.13 4.04
2109 2210 4.664150 TGCATGTACCGTGAGATATCAA 57.336 40.909 5.32 0.00 0.00 2.57
2129 2230 7.667575 ATCAACATGATACTCCACTAGTTCT 57.332 36.000 0.00 0.00 39.80 3.01
2130 2231 7.482169 TCAACATGATACTCCACTAGTTCTT 57.518 36.000 0.00 0.00 39.80 2.52
2180 2282 6.695292 GATCGCTTGATCAAACAATTTTGT 57.305 33.333 9.88 0.00 46.42 2.83
2181 2283 7.795431 GATCGCTTGATCAAACAATTTTGTA 57.205 32.000 9.88 0.00 46.42 2.41
2182 2284 7.801547 ATCGCTTGATCAAACAATTTTGTAG 57.198 32.000 9.88 0.00 42.51 2.74
2183 2285 5.629020 TCGCTTGATCAAACAATTTTGTAGC 59.371 36.000 9.88 3.68 42.51 3.58
2184 2286 5.630680 CGCTTGATCAAACAATTTTGTAGCT 59.369 36.000 9.88 0.00 42.51 3.32
2185 2287 6.183359 CGCTTGATCAAACAATTTTGTAGCTC 60.183 38.462 9.88 3.20 42.51 4.09
2186 2288 6.865205 GCTTGATCAAACAATTTTGTAGCTCT 59.135 34.615 9.88 0.00 42.51 4.09
2187 2289 7.061557 GCTTGATCAAACAATTTTGTAGCTCTC 59.938 37.037 9.88 0.00 42.51 3.20
2188 2290 7.750229 TGATCAAACAATTTTGTAGCTCTCT 57.250 32.000 0.00 0.00 42.51 3.10
2189 2291 8.169977 TGATCAAACAATTTTGTAGCTCTCTT 57.830 30.769 0.00 0.00 42.51 2.85
2190 2292 8.292448 TGATCAAACAATTTTGTAGCTCTCTTC 58.708 33.333 0.00 0.00 42.51 2.87
2191 2293 6.970484 TCAAACAATTTTGTAGCTCTCTTCC 58.030 36.000 0.00 0.00 42.51 3.46
2192 2294 6.772716 TCAAACAATTTTGTAGCTCTCTTCCT 59.227 34.615 0.00 0.00 42.51 3.36
2193 2295 6.566197 AACAATTTTGTAGCTCTCTTCCTG 57.434 37.500 0.00 0.00 41.31 3.86
2213 2333 7.411486 TCCTGTTAAGTCAATGAAAAACCAA 57.589 32.000 0.00 0.00 0.00 3.67
2256 2378 4.900635 AAAAAGAACTTCAGCACGTCAT 57.099 36.364 0.00 0.00 0.00 3.06
2262 2384 2.838736 ACTTCAGCACGTCATGAAAGT 58.161 42.857 11.84 0.00 35.14 2.66
2267 2389 3.006430 TCAGCACGTCATGAAAGTAGGAA 59.994 43.478 0.00 0.00 0.00 3.36
2351 2479 3.742369 GGCAATGAACAACAGTTGGAATG 59.258 43.478 17.76 9.63 34.12 2.67
2352 2480 3.184986 GCAATGAACAACAGTTGGAATGC 59.815 43.478 17.76 14.80 34.12 3.56
2376 2504 5.078411 AGACTACTTAACCAGATGTGCAG 57.922 43.478 0.00 0.00 0.00 4.41
2416 2544 3.690475 ACTGAGATGCATTCTGTGTGA 57.310 42.857 0.00 0.00 33.74 3.58
2475 2603 8.730680 TGATTGAAGGTTTTATAGAAGAGTTGC 58.269 33.333 0.00 0.00 0.00 4.17
2479 2607 4.019591 AGGTTTTATAGAAGAGTTGCGGGT 60.020 41.667 0.00 0.00 0.00 5.28
2480 2608 5.188359 AGGTTTTATAGAAGAGTTGCGGGTA 59.812 40.000 0.00 0.00 0.00 3.69
2484 2612 7.605410 TTTATAGAAGAGTTGCGGGTAAAAG 57.395 36.000 0.00 0.00 0.00 2.27
2514 2642 6.013725 TGTTTATAGTGACATTCTCAGGGTGT 60.014 38.462 0.00 0.00 0.00 4.16
2522 2650 2.957402 TTCTCAGGGTGTTGCATTCT 57.043 45.000 0.00 0.00 0.00 2.40
2532 2660 5.481473 AGGGTGTTGCATTCTATTTTGTCAT 59.519 36.000 0.00 0.00 0.00 3.06
2546 2674 8.998377 TCTATTTTGTCATTGTTTGATCGAAGA 58.002 29.630 0.00 0.00 45.75 2.87
2554 2682 8.937932 GTCATTGTTTGATCGAAGATTTTATCG 58.062 33.333 0.00 0.00 45.12 2.92
2568 2696 4.614555 TTTTATCGAATTGATGCAGCGT 57.385 36.364 0.00 0.00 37.99 5.07
2587 2715 4.219944 AGCGTTGTAATCCTTAGTCAGACA 59.780 41.667 2.66 0.00 0.00 3.41
2588 2716 5.105310 AGCGTTGTAATCCTTAGTCAGACAT 60.105 40.000 2.66 0.00 0.00 3.06
2595 2723 8.204160 TGTAATCCTTAGTCAGACATTATGGTG 58.796 37.037 2.66 0.00 0.00 4.17
2624 2752 6.074142 GCTATTTCAAAACAAAGCCTGAACTG 60.074 38.462 0.00 0.00 0.00 3.16
2625 2753 3.799281 TCAAAACAAAGCCTGAACTGG 57.201 42.857 0.00 0.00 0.00 4.00
2629 2757 5.104982 TCAAAACAAAGCCTGAACTGGAAAT 60.105 36.000 2.01 0.00 0.00 2.17
2632 2760 6.478512 AACAAAGCCTGAACTGGAAATTTA 57.521 33.333 0.00 0.00 0.00 1.40
2639 2767 7.210174 AGCCTGAACTGGAAATTTAAAAAGAC 58.790 34.615 0.00 0.00 0.00 3.01
2644 2772 6.607735 ACTGGAAATTTAAAAAGACGACGA 57.392 33.333 0.00 0.00 0.00 4.20
2645 2773 6.424683 ACTGGAAATTTAAAAAGACGACGAC 58.575 36.000 0.00 0.00 0.00 4.34
2646 2774 5.433855 TGGAAATTTAAAAAGACGACGACG 58.566 37.500 5.58 5.58 45.75 5.12
2657 2785 4.400109 GACGACGTCGCTGCTGGA 62.400 66.667 35.92 0.00 44.43 3.86
2658 2786 4.702081 ACGACGTCGCTGCTGGAC 62.702 66.667 35.92 0.00 44.43 4.02
2663 2791 4.057428 GTCGCTGCTGGACGGACT 62.057 66.667 0.00 0.00 0.00 3.85
2664 2792 2.360726 TCGCTGCTGGACGGACTA 60.361 61.111 0.00 0.00 0.00 2.59
2665 2793 2.202623 CGCTGCTGGACGGACTAC 60.203 66.667 0.00 0.00 0.00 2.73
2666 2794 2.184579 GCTGCTGGACGGACTACC 59.815 66.667 0.00 0.00 0.00 3.18
2667 2795 2.893398 CTGCTGGACGGACTACCC 59.107 66.667 0.00 0.00 0.00 3.69
2668 2796 1.682684 CTGCTGGACGGACTACCCT 60.683 63.158 0.00 0.00 0.00 4.34
2669 2797 1.229082 TGCTGGACGGACTACCCTT 60.229 57.895 0.00 0.00 0.00 3.95
2670 2798 1.218316 GCTGGACGGACTACCCTTG 59.782 63.158 0.00 0.00 0.00 3.61
2671 2799 1.542187 GCTGGACGGACTACCCTTGT 61.542 60.000 0.00 0.00 0.00 3.16
2672 2800 0.531200 CTGGACGGACTACCCTTGTC 59.469 60.000 0.00 0.00 0.00 3.18
2681 2809 4.287766 GACTACCCTTGTCCAAATCTGT 57.712 45.455 0.00 0.00 0.00 3.41
2682 2810 4.652822 GACTACCCTTGTCCAAATCTGTT 58.347 43.478 0.00 0.00 0.00 3.16
2683 2811 5.061721 ACTACCCTTGTCCAAATCTGTTT 57.938 39.130 0.00 0.00 0.00 2.83
2684 2812 5.454966 ACTACCCTTGTCCAAATCTGTTTT 58.545 37.500 0.00 0.00 0.00 2.43
2685 2813 4.670896 ACCCTTGTCCAAATCTGTTTTG 57.329 40.909 4.57 4.57 43.64 2.44
2686 2814 4.285863 ACCCTTGTCCAAATCTGTTTTGA 58.714 39.130 11.71 0.00 46.36 2.69
2687 2815 4.342092 ACCCTTGTCCAAATCTGTTTTGAG 59.658 41.667 11.71 2.84 46.36 3.02
2688 2816 4.342092 CCCTTGTCCAAATCTGTTTTGAGT 59.658 41.667 11.71 0.00 46.36 3.41
2689 2817 5.284079 CCTTGTCCAAATCTGTTTTGAGTG 58.716 41.667 11.71 0.00 46.36 3.51
2690 2818 5.067674 CCTTGTCCAAATCTGTTTTGAGTGA 59.932 40.000 11.71 0.25 46.36 3.41
2691 2819 6.239120 CCTTGTCCAAATCTGTTTTGAGTGAT 60.239 38.462 11.71 0.00 46.36 3.06
2692 2820 6.317789 TGTCCAAATCTGTTTTGAGTGATC 57.682 37.500 11.71 0.00 46.36 2.92
2693 2821 6.064060 TGTCCAAATCTGTTTTGAGTGATCT 58.936 36.000 11.71 0.00 46.36 2.75
2694 2822 6.547141 TGTCCAAATCTGTTTTGAGTGATCTT 59.453 34.615 11.71 0.00 46.36 2.40
2695 2823 7.080724 GTCCAAATCTGTTTTGAGTGATCTTC 58.919 38.462 11.71 0.00 46.36 2.87
2696 2824 6.207417 TCCAAATCTGTTTTGAGTGATCTTCC 59.793 38.462 11.71 0.00 46.36 3.46
2697 2825 6.016024 CCAAATCTGTTTTGAGTGATCTTCCA 60.016 38.462 11.71 0.00 46.36 3.53
2698 2826 6.566197 AATCTGTTTTGAGTGATCTTCCAC 57.434 37.500 0.00 0.00 37.32 4.02
2699 2827 5.034852 TCTGTTTTGAGTGATCTTCCACA 57.965 39.130 0.00 0.00 39.42 4.17
2700 2828 5.624159 TCTGTTTTGAGTGATCTTCCACAT 58.376 37.500 0.00 0.00 39.42 3.21
2701 2829 5.702670 TCTGTTTTGAGTGATCTTCCACATC 59.297 40.000 0.00 0.00 39.42 3.06
2702 2830 5.375773 TGTTTTGAGTGATCTTCCACATCA 58.624 37.500 0.00 0.00 39.42 3.07
2707 2835 1.662629 GTGATCTTCCACATCACTGCG 59.337 52.381 5.70 0.00 44.65 5.18
2708 2836 0.654683 GATCTTCCACATCACTGCGC 59.345 55.000 0.00 0.00 0.00 6.09
2709 2837 0.251354 ATCTTCCACATCACTGCGCT 59.749 50.000 9.73 0.00 0.00 5.92
2710 2838 0.035317 TCTTCCACATCACTGCGCTT 59.965 50.000 9.73 0.00 0.00 4.68
2711 2839 0.167470 CTTCCACATCACTGCGCTTG 59.833 55.000 9.73 6.05 0.00 4.01
2712 2840 0.250252 TTCCACATCACTGCGCTTGA 60.250 50.000 9.73 12.08 0.00 3.02
2713 2841 0.036105 TCCACATCACTGCGCTTGAT 60.036 50.000 16.50 16.50 33.81 2.57
2716 2844 3.891786 CATCACTGCGCTTGATGTC 57.108 52.632 29.58 0.00 43.65 3.06
2717 2845 1.081094 CATCACTGCGCTTGATGTCA 58.919 50.000 29.58 7.20 43.65 3.58
2718 2846 1.465777 CATCACTGCGCTTGATGTCAA 59.534 47.619 29.58 6.63 43.65 3.18
2719 2847 1.812235 TCACTGCGCTTGATGTCAAT 58.188 45.000 9.73 0.00 35.02 2.57
2720 2848 1.465777 TCACTGCGCTTGATGTCAATG 59.534 47.619 9.73 0.00 35.02 2.82
2721 2849 1.465777 CACTGCGCTTGATGTCAATGA 59.534 47.619 9.73 0.00 35.02 2.57
2722 2850 2.096980 CACTGCGCTTGATGTCAATGAT 59.903 45.455 9.73 0.00 35.02 2.45
2723 2851 2.096980 ACTGCGCTTGATGTCAATGATG 59.903 45.455 9.73 0.00 35.02 3.07
2724 2852 2.086094 TGCGCTTGATGTCAATGATGT 58.914 42.857 9.73 0.00 35.02 3.06
2725 2853 2.159490 TGCGCTTGATGTCAATGATGTG 60.159 45.455 9.73 0.00 35.02 3.21
2726 2854 2.447250 CGCTTGATGTCAATGATGTGC 58.553 47.619 0.00 0.00 35.02 4.57
2727 2855 2.793585 CGCTTGATGTCAATGATGTGCC 60.794 50.000 0.00 0.00 35.02 5.01
2728 2856 2.426024 GCTTGATGTCAATGATGTGCCT 59.574 45.455 0.00 0.00 35.02 4.75
2729 2857 3.488721 GCTTGATGTCAATGATGTGCCTC 60.489 47.826 0.00 0.00 35.02 4.70
2730 2858 3.639672 TGATGTCAATGATGTGCCTCT 57.360 42.857 0.00 0.00 0.00 3.69
2731 2859 3.275999 TGATGTCAATGATGTGCCTCTG 58.724 45.455 0.00 0.00 0.00 3.35
2732 2860 2.118313 TGTCAATGATGTGCCTCTGG 57.882 50.000 0.00 0.00 0.00 3.86
2733 2861 1.340308 TGTCAATGATGTGCCTCTGGG 60.340 52.381 0.00 0.00 0.00 4.45
2753 2881 3.905784 GGCACCAAACAAAGAGATTCAG 58.094 45.455 0.00 0.00 0.00 3.02
2754 2882 3.311966 GCACCAAACAAAGAGATTCAGC 58.688 45.455 0.00 0.00 0.00 4.26
2755 2883 3.558505 CACCAAACAAAGAGATTCAGCG 58.441 45.455 0.00 0.00 0.00 5.18
2756 2884 2.554032 ACCAAACAAAGAGATTCAGCGG 59.446 45.455 0.00 0.00 0.00 5.52
2757 2885 2.095059 CCAAACAAAGAGATTCAGCGGG 60.095 50.000 0.00 0.00 0.00 6.13
2758 2886 1.168714 AACAAAGAGATTCAGCGGGC 58.831 50.000 0.00 0.00 0.00 6.13
2759 2887 0.326264 ACAAAGAGATTCAGCGGGCT 59.674 50.000 0.00 0.00 0.00 5.19
2760 2888 1.271597 ACAAAGAGATTCAGCGGGCTT 60.272 47.619 0.00 0.00 0.00 4.35
2761 2889 1.815003 CAAAGAGATTCAGCGGGCTTT 59.185 47.619 0.00 0.00 0.00 3.51
2762 2890 2.206576 AAGAGATTCAGCGGGCTTTT 57.793 45.000 0.00 0.00 0.00 2.27
2763 2891 1.743996 AGAGATTCAGCGGGCTTTTC 58.256 50.000 0.00 0.00 0.00 2.29
2764 2892 1.280421 AGAGATTCAGCGGGCTTTTCT 59.720 47.619 0.00 0.00 0.00 2.52
2765 2893 2.087646 GAGATTCAGCGGGCTTTTCTT 58.912 47.619 0.00 0.00 0.00 2.52
2766 2894 2.489722 GAGATTCAGCGGGCTTTTCTTT 59.510 45.455 0.00 0.00 0.00 2.52
2767 2895 2.229784 AGATTCAGCGGGCTTTTCTTTG 59.770 45.455 0.00 0.00 0.00 2.77
2768 2896 0.673437 TTCAGCGGGCTTTTCTTTGG 59.327 50.000 0.00 0.00 0.00 3.28
2769 2897 1.178534 TCAGCGGGCTTTTCTTTGGG 61.179 55.000 0.00 0.00 0.00 4.12
2770 2898 2.048222 GCGGGCTTTTCTTTGGGC 60.048 61.111 0.00 0.00 0.00 5.36
2771 2899 2.258286 CGGGCTTTTCTTTGGGCG 59.742 61.111 0.00 0.00 0.00 6.13
2772 2900 2.656646 GGGCTTTTCTTTGGGCGG 59.343 61.111 0.00 0.00 0.00 6.13
2773 2901 2.656646 GGCTTTTCTTTGGGCGGG 59.343 61.111 0.00 0.00 0.00 6.13
2774 2902 2.656646 GCTTTTCTTTGGGCGGGG 59.343 61.111 0.00 0.00 0.00 5.73
2775 2903 1.906333 GCTTTTCTTTGGGCGGGGA 60.906 57.895 0.00 0.00 0.00 4.81
2776 2904 1.964448 CTTTTCTTTGGGCGGGGAC 59.036 57.895 0.00 0.00 0.00 4.46
2777 2905 0.825840 CTTTTCTTTGGGCGGGGACA 60.826 55.000 0.00 0.00 0.00 4.02
2778 2906 0.825840 TTTTCTTTGGGCGGGGACAG 60.826 55.000 0.00 0.00 0.00 3.51
2779 2907 1.710996 TTTCTTTGGGCGGGGACAGA 61.711 55.000 0.00 0.00 0.00 3.41
2780 2908 1.497309 TTCTTTGGGCGGGGACAGAT 61.497 55.000 0.00 0.00 0.00 2.90
2781 2909 1.452108 CTTTGGGCGGGGACAGATC 60.452 63.158 0.00 0.00 0.00 2.75
2782 2910 2.196997 CTTTGGGCGGGGACAGATCA 62.197 60.000 0.00 0.00 0.00 2.92
2783 2911 2.196997 TTTGGGCGGGGACAGATCAG 62.197 60.000 0.00 0.00 0.00 2.90
2784 2912 2.764128 GGGCGGGGACAGATCAGA 60.764 66.667 0.00 0.00 0.00 3.27
2785 2913 2.143419 GGGCGGGGACAGATCAGAT 61.143 63.158 0.00 0.00 0.00 2.90
2786 2914 1.369321 GGCGGGGACAGATCAGATC 59.631 63.158 1.64 1.64 0.00 2.75
2787 2915 1.118356 GGCGGGGACAGATCAGATCT 61.118 60.000 7.15 7.15 41.15 2.75
2788 2916 0.316841 GCGGGGACAGATCAGATCTC 59.683 60.000 10.25 0.57 37.58 2.75
2789 2917 0.595588 CGGGGACAGATCAGATCTCG 59.404 60.000 10.25 6.98 37.58 4.04
2790 2918 0.965439 GGGGACAGATCAGATCTCGG 59.035 60.000 10.25 3.17 37.58 4.63
2791 2919 0.965439 GGGACAGATCAGATCTCGGG 59.035 60.000 10.25 2.45 37.58 5.14
2792 2920 1.698506 GGACAGATCAGATCTCGGGT 58.301 55.000 10.25 5.80 37.58 5.28
2793 2921 1.339610 GGACAGATCAGATCTCGGGTG 59.660 57.143 10.25 2.66 37.58 4.61
2794 2922 1.339610 GACAGATCAGATCTCGGGTGG 59.660 57.143 10.25 0.99 37.58 4.61
2795 2923 0.033228 CAGATCAGATCTCGGGTGGC 59.967 60.000 10.25 0.00 37.58 5.01
2796 2924 0.397675 AGATCAGATCTCGGGTGGCA 60.398 55.000 7.15 0.00 33.42 4.92
2797 2925 0.465705 GATCAGATCTCGGGTGGCAA 59.534 55.000 2.81 0.00 0.00 4.52
2798 2926 0.911769 ATCAGATCTCGGGTGGCAAA 59.088 50.000 0.00 0.00 0.00 3.68
2799 2927 0.911769 TCAGATCTCGGGTGGCAAAT 59.088 50.000 0.00 0.00 0.00 2.32
2800 2928 1.019673 CAGATCTCGGGTGGCAAATG 58.980 55.000 0.00 0.00 0.00 2.32
2801 2929 0.749454 AGATCTCGGGTGGCAAATGC 60.749 55.000 0.00 0.00 41.14 3.56
2802 2930 1.001020 ATCTCGGGTGGCAAATGCA 60.001 52.632 7.80 0.00 44.36 3.96
2803 2931 0.611618 ATCTCGGGTGGCAAATGCAA 60.612 50.000 7.80 0.00 44.36 4.08
2804 2932 0.825425 TCTCGGGTGGCAAATGCAAA 60.825 50.000 7.80 0.00 44.36 3.68
2805 2933 0.388907 CTCGGGTGGCAAATGCAAAG 60.389 55.000 7.80 0.00 44.36 2.77
2806 2934 1.112315 TCGGGTGGCAAATGCAAAGT 61.112 50.000 7.80 0.00 44.36 2.66
2807 2935 0.249826 CGGGTGGCAAATGCAAAGTT 60.250 50.000 7.80 0.00 44.36 2.66
2808 2936 1.000283 CGGGTGGCAAATGCAAAGTTA 60.000 47.619 7.80 0.00 44.36 2.24
2809 2937 2.546795 CGGGTGGCAAATGCAAAGTTAA 60.547 45.455 7.80 0.00 44.36 2.01
2810 2938 2.805671 GGGTGGCAAATGCAAAGTTAAC 59.194 45.455 7.80 0.00 44.36 2.01
2811 2939 3.494223 GGGTGGCAAATGCAAAGTTAACT 60.494 43.478 1.12 1.12 44.36 2.24
2812 2940 3.494251 GGTGGCAAATGCAAAGTTAACTG 59.506 43.478 9.34 0.00 44.36 3.16
2813 2941 3.494251 GTGGCAAATGCAAAGTTAACTGG 59.506 43.478 9.34 6.04 44.36 4.00
2814 2942 3.066380 GGCAAATGCAAAGTTAACTGGG 58.934 45.455 9.34 5.66 44.36 4.45
2815 2943 3.244044 GGCAAATGCAAAGTTAACTGGGA 60.244 43.478 9.34 6.55 44.36 4.37
2816 2944 3.989817 GCAAATGCAAAGTTAACTGGGAG 59.010 43.478 9.34 0.91 41.59 4.30
2817 2945 4.559153 CAAATGCAAAGTTAACTGGGAGG 58.441 43.478 9.34 0.00 0.00 4.30
2818 2946 3.525800 ATGCAAAGTTAACTGGGAGGT 57.474 42.857 9.34 0.00 0.00 3.85
2819 2947 2.582052 TGCAAAGTTAACTGGGAGGTG 58.418 47.619 9.34 2.60 0.00 4.00
2820 2948 1.886542 GCAAAGTTAACTGGGAGGTGG 59.113 52.381 9.34 0.00 0.00 4.61
2821 2949 2.751816 GCAAAGTTAACTGGGAGGTGGT 60.752 50.000 9.34 0.00 0.00 4.16
2822 2950 3.562182 CAAAGTTAACTGGGAGGTGGTT 58.438 45.455 9.34 0.00 0.00 3.67
2823 2951 3.958147 CAAAGTTAACTGGGAGGTGGTTT 59.042 43.478 9.34 0.00 0.00 3.27
2824 2952 3.223674 AGTTAACTGGGAGGTGGTTTG 57.776 47.619 7.48 0.00 0.00 2.93
2825 2953 1.611977 GTTAACTGGGAGGTGGTTTGC 59.388 52.381 0.00 0.00 0.00 3.68
2826 2954 0.111639 TAACTGGGAGGTGGTTTGCC 59.888 55.000 0.00 0.00 0.00 4.52
2827 2955 1.943730 AACTGGGAGGTGGTTTGCCA 61.944 55.000 0.00 0.00 43.73 4.92
2841 2969 2.906691 TTGCCAATCCACAAACTTGG 57.093 45.000 0.00 0.00 41.92 3.61
2842 2970 1.047002 TGCCAATCCACAAACTTGGG 58.953 50.000 3.01 0.00 39.85 4.12
2843 2971 1.047801 GCCAATCCACAAACTTGGGT 58.952 50.000 3.01 0.00 39.85 4.51
2844 2972 1.270252 GCCAATCCACAAACTTGGGTG 60.270 52.381 3.01 0.00 39.85 4.61
2848 2976 4.275781 CACAAACTTGGGTGGCCT 57.724 55.556 3.32 0.00 0.00 5.19
2849 2977 1.741525 CACAAACTTGGGTGGCCTG 59.258 57.895 3.32 0.00 0.00 4.85
2850 2978 1.457455 ACAAACTTGGGTGGCCTGG 60.457 57.895 3.32 0.00 0.00 4.45
2851 2979 2.201210 AAACTTGGGTGGCCTGGG 59.799 61.111 3.32 0.00 0.00 4.45
2852 2980 2.710826 AAACTTGGGTGGCCTGGGT 61.711 57.895 3.32 0.00 0.00 4.51
2853 2981 1.365105 AAACTTGGGTGGCCTGGGTA 61.365 55.000 3.32 0.00 0.00 3.69
2854 2982 1.146544 AACTTGGGTGGCCTGGGTAT 61.147 55.000 3.32 0.00 0.00 2.73
2855 2983 1.227383 CTTGGGTGGCCTGGGTATC 59.773 63.158 3.32 0.00 0.00 2.24
2856 2984 2.284515 CTTGGGTGGCCTGGGTATCC 62.285 65.000 3.32 0.00 0.00 2.59
2857 2985 2.368329 GGGTGGCCTGGGTATCCT 60.368 66.667 3.32 0.00 0.00 3.24
2858 2986 2.452937 GGGTGGCCTGGGTATCCTC 61.453 68.421 3.32 0.00 0.00 3.71
2859 2987 2.808206 GGTGGCCTGGGTATCCTCG 61.808 68.421 3.32 0.00 0.00 4.63
2860 2988 1.760875 GTGGCCTGGGTATCCTCGA 60.761 63.158 3.32 0.00 0.00 4.04
2861 2989 1.760875 TGGCCTGGGTATCCTCGAC 60.761 63.158 3.32 0.00 0.00 4.20
2862 2990 2.508751 GGCCTGGGTATCCTCGACC 61.509 68.421 0.00 0.00 36.12 4.79
2863 2991 1.457831 GCCTGGGTATCCTCGACCT 60.458 63.158 0.00 0.00 37.13 3.85
2864 2992 1.465200 GCCTGGGTATCCTCGACCTC 61.465 65.000 0.00 0.00 37.13 3.85
2865 2993 1.173444 CCTGGGTATCCTCGACCTCG 61.173 65.000 0.00 0.00 37.13 4.63
2867 2995 0.465097 TGGGTATCCTCGACCTCGAC 60.465 60.000 0.00 0.00 44.22 4.20
2868 2996 0.465097 GGGTATCCTCGACCTCGACA 60.465 60.000 0.00 0.00 44.22 4.35
2869 2997 1.386533 GGTATCCTCGACCTCGACAA 58.613 55.000 0.00 0.00 44.22 3.18
2870 2998 1.747355 GGTATCCTCGACCTCGACAAA 59.253 52.381 0.00 0.00 44.22 2.83
2871 2999 2.361438 GGTATCCTCGACCTCGACAAAT 59.639 50.000 0.00 0.00 44.22 2.32
2872 3000 3.181478 GGTATCCTCGACCTCGACAAATT 60.181 47.826 0.00 0.00 44.22 1.82
2873 3001 2.649331 TCCTCGACCTCGACAAATTC 57.351 50.000 0.00 0.00 44.22 2.17
2874 3002 2.168496 TCCTCGACCTCGACAAATTCT 58.832 47.619 0.00 0.00 44.22 2.40
2875 3003 2.163815 TCCTCGACCTCGACAAATTCTC 59.836 50.000 0.00 0.00 44.22 2.87
2876 3004 2.164624 CCTCGACCTCGACAAATTCTCT 59.835 50.000 0.00 0.00 44.22 3.10
2877 3005 3.430931 CTCGACCTCGACAAATTCTCTC 58.569 50.000 0.00 0.00 44.22 3.20
2878 3006 2.817844 TCGACCTCGACAAATTCTCTCA 59.182 45.455 0.00 0.00 44.22 3.27
2879 3007 3.254903 TCGACCTCGACAAATTCTCTCAA 59.745 43.478 0.00 0.00 44.22 3.02
2880 3008 3.610242 CGACCTCGACAAATTCTCTCAAG 59.390 47.826 0.00 0.00 43.02 3.02
2881 3009 3.330267 ACCTCGACAAATTCTCTCAAGC 58.670 45.455 0.00 0.00 0.00 4.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 49 6.254589 TCGCAAATACAAAAAGTTCTTTGTGG 59.745 34.615 16.61 5.43 46.42 4.17
69 71 6.938542 TGTTTATGTTTTCCAAAAATGTCGC 58.061 32.000 0.00 0.00 0.00 5.19
166 168 7.910441 AAATCATGAATTCAAACAATGGTCC 57.090 32.000 13.09 0.00 0.00 4.46
193 197 7.826252 TGTTTCTGGATTCCAAAAATGTTCAAA 59.174 29.630 7.43 0.00 25.68 2.69
355 381 9.535270 CTTCGAGAAATCAGAAAATGTTTAGAC 57.465 33.333 0.00 0.00 0.00 2.59
610 641 1.981254 ATGCTCGGCAATTCAAAACG 58.019 45.000 2.68 0.00 43.62 3.60
713 745 9.613957 TGCATTCAAAAATATTTGCAATTTCAG 57.386 25.926 0.00 0.00 44.52 3.02
767 799 3.506810 AGAAGATCTTCGCGACTTTGAG 58.493 45.455 25.88 2.64 43.97 3.02
784 816 6.846350 AGAAAATGTTGGCGATTTCTAGAAG 58.154 36.000 5.12 0.00 39.61 2.85
789 821 5.957842 TGTAGAAAATGTTGGCGATTTCT 57.042 34.783 6.94 6.94 42.82 2.52
797 829 2.675844 TCGCGGATGTAGAAAATGTTGG 59.324 45.455 6.13 0.00 0.00 3.77
798 830 4.335082 TTCGCGGATGTAGAAAATGTTG 57.665 40.909 6.13 0.00 0.00 3.33
857 889 2.415168 TGTTCGCGGACATTCAAGAATC 59.585 45.455 18.26 0.00 0.00 2.52
861 896 2.900122 AATGTTCGCGGACATTCAAG 57.100 45.000 34.63 0.00 44.65 3.02
867 902 0.820074 ACCCAAAATGTTCGCGGACA 60.820 50.000 24.85 24.85 0.00 4.02
883 918 0.395312 TTCCGTTCTTGGTCTGACCC 59.605 55.000 23.42 7.14 37.50 4.46
884 919 1.343465 TCTTCCGTTCTTGGTCTGACC 59.657 52.381 19.96 19.96 39.22 4.02
886 921 2.224209 GGTTCTTCCGTTCTTGGTCTGA 60.224 50.000 0.00 0.00 0.00 3.27
887 922 2.143925 GGTTCTTCCGTTCTTGGTCTG 58.856 52.381 0.00 0.00 0.00 3.51
888 923 1.071857 GGGTTCTTCCGTTCTTGGTCT 59.928 52.381 0.00 0.00 37.00 3.85
889 924 1.520494 GGGTTCTTCCGTTCTTGGTC 58.480 55.000 0.00 0.00 37.00 4.02
890 925 0.250166 CGGGTTCTTCCGTTCTTGGT 60.250 55.000 0.00 0.00 44.60 3.67
891 926 2.540145 CGGGTTCTTCCGTTCTTGG 58.460 57.895 0.00 0.00 44.60 3.61
900 935 1.627550 GCTCTTGCGACGGGTTCTTC 61.628 60.000 0.00 0.00 0.00 2.87
1196 1276 2.112718 GGGCTGGGAGCTATGCAG 59.887 66.667 0.00 0.00 41.99 4.41
1226 1306 1.672881 GATGGAATGGAAGCGTGGAAG 59.327 52.381 0.00 0.00 0.00 3.46
1227 1307 1.004161 TGATGGAATGGAAGCGTGGAA 59.996 47.619 0.00 0.00 0.00 3.53
1245 1325 2.108157 GCGTGGTCAGTGTGGTGA 59.892 61.111 0.00 0.00 0.00 4.02
1392 1477 4.021925 GCCAGGAGGTCAACGGCT 62.022 66.667 0.00 0.00 39.73 5.52
1482 1567 3.831911 CCATCTCCTCCTCCTCTGTTATC 59.168 52.174 0.00 0.00 0.00 1.75
1483 1568 3.208692 ACCATCTCCTCCTCCTCTGTTAT 59.791 47.826 0.00 0.00 0.00 1.89
1484 1569 2.587777 ACCATCTCCTCCTCCTCTGTTA 59.412 50.000 0.00 0.00 0.00 2.41
1553 1638 3.664223 GAGACCGCCACGTCGTCTC 62.664 68.421 12.98 12.98 37.85 3.36
1554 1639 3.735029 GAGACCGCCACGTCGTCT 61.735 66.667 0.00 4.31 37.85 4.18
1555 1640 4.773117 GGAGACCGCCACGTCGTC 62.773 72.222 0.00 0.00 37.85 4.20
1719 1813 2.425592 CTCCAGAACCACGCCACA 59.574 61.111 0.00 0.00 0.00 4.17
1754 1848 5.334724 GGCCAAGATTGATCGATCAGAATTC 60.335 44.000 25.95 20.06 38.19 2.17
1755 1849 4.518211 GGCCAAGATTGATCGATCAGAATT 59.482 41.667 25.95 18.41 38.19 2.17
1756 1850 4.070716 GGCCAAGATTGATCGATCAGAAT 58.929 43.478 25.95 18.59 38.19 2.40
1757 1851 3.470709 GGCCAAGATTGATCGATCAGAA 58.529 45.455 25.95 14.63 38.19 3.02
1758 1852 2.546584 CGGCCAAGATTGATCGATCAGA 60.547 50.000 25.95 17.77 38.19 3.27
1759 1853 1.797046 CGGCCAAGATTGATCGATCAG 59.203 52.381 25.95 15.47 38.19 2.90
1760 1854 1.869774 CGGCCAAGATTGATCGATCA 58.130 50.000 23.99 23.99 34.44 2.92
1783 1877 5.710984 ACTAGTAGTACATCACAGCACAAC 58.289 41.667 0.00 0.00 0.00 3.32
1801 1895 6.257193 GCACACACAAGTACTACAAAACTAGT 59.743 38.462 0.00 0.00 0.00 2.57
1802 1896 6.479001 AGCACACACAAGTACTACAAAACTAG 59.521 38.462 0.00 0.00 0.00 2.57
1803 1897 6.342906 AGCACACACAAGTACTACAAAACTA 58.657 36.000 0.00 0.00 0.00 2.24
1804 1898 5.183228 AGCACACACAAGTACTACAAAACT 58.817 37.500 0.00 0.00 0.00 2.66
1805 1899 5.479716 AGCACACACAAGTACTACAAAAC 57.520 39.130 0.00 0.00 0.00 2.43
1806 1900 6.503589 AAAGCACACACAAGTACTACAAAA 57.496 33.333 0.00 0.00 0.00 2.44
1807 1901 6.318628 CAAAAGCACACACAAGTACTACAAA 58.681 36.000 0.00 0.00 0.00 2.83
1810 1904 4.261031 CCCAAAAGCACACACAAGTACTAC 60.261 45.833 0.00 0.00 0.00 2.73
1812 1906 2.687935 CCCAAAAGCACACACAAGTACT 59.312 45.455 0.00 0.00 0.00 2.73
1823 1917 0.597377 CGCCAAACTCCCAAAAGCAC 60.597 55.000 0.00 0.00 0.00 4.40
1908 2008 0.459585 GGAAACGCTGCATACTCCGA 60.460 55.000 0.00 0.00 0.00 4.55
1938 2038 7.264221 ACTCAAGAACTGCACTATCTATTCTG 58.736 38.462 0.00 0.00 0.00 3.02
1979 2079 7.559897 ACCTTCCTTTACTCAATTGTCTCAAAA 59.440 33.333 5.13 0.70 0.00 2.44
1980 2080 7.013274 CACCTTCCTTTACTCAATTGTCTCAAA 59.987 37.037 5.13 1.97 0.00 2.69
1982 2082 5.997746 CACCTTCCTTTACTCAATTGTCTCA 59.002 40.000 5.13 0.00 0.00 3.27
1985 2085 4.082733 GCCACCTTCCTTTACTCAATTGTC 60.083 45.833 5.13 0.00 0.00 3.18
1986 2086 3.826729 GCCACCTTCCTTTACTCAATTGT 59.173 43.478 5.13 0.00 0.00 2.71
1989 2089 3.806949 TGCCACCTTCCTTTACTCAAT 57.193 42.857 0.00 0.00 0.00 2.57
1990 2090 3.073798 TGATGCCACCTTCCTTTACTCAA 59.926 43.478 0.00 0.00 0.00 3.02
1991 2091 2.642311 TGATGCCACCTTCCTTTACTCA 59.358 45.455 0.00 0.00 0.00 3.41
1992 2092 3.350219 TGATGCCACCTTCCTTTACTC 57.650 47.619 0.00 0.00 0.00 2.59
1993 2093 3.624777 CATGATGCCACCTTCCTTTACT 58.375 45.455 0.00 0.00 0.00 2.24
1994 2094 2.689983 CCATGATGCCACCTTCCTTTAC 59.310 50.000 0.00 0.00 0.00 2.01
1996 2096 1.358787 TCCATGATGCCACCTTCCTTT 59.641 47.619 0.00 0.00 0.00 3.11
1997 2097 1.002069 TCCATGATGCCACCTTCCTT 58.998 50.000 0.00 0.00 0.00 3.36
1998 2098 0.257039 GTCCATGATGCCACCTTCCT 59.743 55.000 0.00 0.00 0.00 3.36
1999 2099 0.034186 TGTCCATGATGCCACCTTCC 60.034 55.000 0.00 0.00 0.00 3.46
2000 2100 1.679680 CATGTCCATGATGCCACCTTC 59.320 52.381 0.87 0.00 41.20 3.46
2004 2105 1.599071 CGTACATGTCCATGATGCCAC 59.401 52.381 13.93 0.00 41.20 5.01
2009 2110 5.735285 ATCTCATCGTACATGTCCATGAT 57.265 39.130 13.93 0.00 41.20 2.45
2066 2167 1.604147 TTCGAGATGCAGAGGCCGAA 61.604 55.000 0.00 0.21 37.54 4.30
2067 2168 2.009424 CTTCGAGATGCAGAGGCCGA 62.009 60.000 0.00 0.00 40.13 5.54
2069 2170 0.392336 ATCTTCGAGATGCAGAGGCC 59.608 55.000 0.00 0.00 40.13 5.19
2080 2181 1.854743 CACGGTACATGCATCTTCGAG 59.145 52.381 0.00 0.00 0.00 4.04
2082 2183 1.854743 CTCACGGTACATGCATCTTCG 59.145 52.381 0.00 1.30 0.00 3.79
2084 2185 3.827008 ATCTCACGGTACATGCATCTT 57.173 42.857 0.00 0.00 0.00 2.40
2109 2210 9.877178 CTAAAAAGAACTAGTGGAGTATCATGT 57.123 33.333 0.00 0.00 37.44 3.21
2129 2230 6.549364 TGGGTGATGAAGAGAAAAGCTAAAAA 59.451 34.615 0.00 0.00 0.00 1.94
2130 2231 6.016276 GTGGGTGATGAAGAGAAAAGCTAAAA 60.016 38.462 0.00 0.00 0.00 1.52
2134 2235 3.416156 GTGGGTGATGAAGAGAAAAGCT 58.584 45.455 0.00 0.00 0.00 3.74
2175 2277 6.827727 ACTTAACAGGAAGAGAGCTACAAAA 58.172 36.000 0.00 0.00 0.00 2.44
2176 2278 6.041637 TGACTTAACAGGAAGAGAGCTACAAA 59.958 38.462 0.00 0.00 0.00 2.83
2177 2279 5.538813 TGACTTAACAGGAAGAGAGCTACAA 59.461 40.000 0.00 0.00 0.00 2.41
2178 2280 5.077564 TGACTTAACAGGAAGAGAGCTACA 58.922 41.667 0.00 0.00 0.00 2.74
2179 2281 5.646577 TGACTTAACAGGAAGAGAGCTAC 57.353 43.478 0.00 0.00 0.00 3.58
2180 2282 6.437477 TCATTGACTTAACAGGAAGAGAGCTA 59.563 38.462 0.00 0.00 0.00 3.32
2181 2283 5.247110 TCATTGACTTAACAGGAAGAGAGCT 59.753 40.000 0.00 0.00 0.00 4.09
2182 2284 5.482908 TCATTGACTTAACAGGAAGAGAGC 58.517 41.667 0.00 0.00 0.00 4.09
2183 2285 7.969536 TTTCATTGACTTAACAGGAAGAGAG 57.030 36.000 0.00 0.00 0.00 3.20
2184 2286 8.621286 GTTTTTCATTGACTTAACAGGAAGAGA 58.379 33.333 0.00 0.00 0.00 3.10
2185 2287 7.862873 GGTTTTTCATTGACTTAACAGGAAGAG 59.137 37.037 0.00 0.00 0.00 2.85
2186 2288 7.340743 TGGTTTTTCATTGACTTAACAGGAAGA 59.659 33.333 0.00 0.00 0.00 2.87
2187 2289 7.488322 TGGTTTTTCATTGACTTAACAGGAAG 58.512 34.615 0.00 0.00 0.00 3.46
2188 2290 7.411486 TGGTTTTTCATTGACTTAACAGGAA 57.589 32.000 0.00 0.00 0.00 3.36
2189 2291 7.093727 TGTTGGTTTTTCATTGACTTAACAGGA 60.094 33.333 0.00 0.00 0.00 3.86
2190 2292 7.038659 TGTTGGTTTTTCATTGACTTAACAGG 58.961 34.615 0.00 0.00 0.00 4.00
2191 2293 8.472683 TTGTTGGTTTTTCATTGACTTAACAG 57.527 30.769 0.00 0.00 0.00 3.16
2192 2294 9.442047 AATTGTTGGTTTTTCATTGACTTAACA 57.558 25.926 0.00 0.00 0.00 2.41
2193 2295 9.701355 CAATTGTTGGTTTTTCATTGACTTAAC 57.299 29.630 0.00 0.00 0.00 2.01
2213 2333 1.412079 TTGAACTGGCCAGCAATTGT 58.588 45.000 33.06 10.28 0.00 2.71
2240 2360 3.248602 ACTTTCATGACGTGCTGAAGTTC 59.751 43.478 0.00 0.00 33.25 3.01
2256 2378 4.764050 TGTGAGTGGTTTCCTACTTTCA 57.236 40.909 0.00 0.00 0.00 2.69
2262 2384 5.818678 ACTGTATTGTGAGTGGTTTCCTA 57.181 39.130 0.00 0.00 0.00 2.94
2267 2389 7.672983 CAGATAAACTGTATTGTGAGTGGTT 57.327 36.000 0.00 0.00 41.30 3.67
2351 2479 4.093556 GCACATCTGGTTAAGTAGTCTTGC 59.906 45.833 0.00 0.00 35.36 4.01
2352 2480 5.237815 TGCACATCTGGTTAAGTAGTCTTG 58.762 41.667 0.00 0.00 35.36 3.02
2416 2544 2.282745 GCCAAAGCAGCTGGGAGT 60.283 61.111 17.12 0.00 39.53 3.85
2475 2603 6.824704 TCACTATAAACATTCCCTTTTACCCG 59.175 38.462 0.00 0.00 0.00 5.28
2514 2642 8.883954 TCAAACAATGACAAAATAGAATGCAA 57.116 26.923 0.00 0.00 31.50 4.08
2546 2674 5.173774 ACGCTGCATCAATTCGATAAAAT 57.826 34.783 0.00 0.00 31.20 1.82
2554 2682 4.037690 GGATTACAACGCTGCATCAATTC 58.962 43.478 0.00 0.00 0.00 2.17
2557 2685 2.710377 AGGATTACAACGCTGCATCAA 58.290 42.857 0.00 0.00 0.00 2.57
2563 2691 4.563184 GTCTGACTAAGGATTACAACGCTG 59.437 45.833 0.00 0.00 0.00 5.18
2568 2696 8.768397 ACCATAATGTCTGACTAAGGATTACAA 58.232 33.333 9.51 0.00 0.00 2.41
2587 2715 8.133024 TGTTTTGAAATAGCTTCCACCATAAT 57.867 30.769 0.00 0.00 32.53 1.28
2588 2716 7.531857 TGTTTTGAAATAGCTTCCACCATAA 57.468 32.000 0.00 0.00 32.53 1.90
2595 2723 5.406477 CAGGCTTTGTTTTGAAATAGCTTCC 59.594 40.000 0.00 0.00 32.53 3.46
2624 2752 5.946073 CGTCGTCGTCTTTTTAAATTTCC 57.054 39.130 0.00 0.00 0.00 3.13
2646 2774 2.697761 TAGTCCGTCCAGCAGCGAC 61.698 63.158 0.00 0.00 0.00 5.19
2647 2775 2.360726 TAGTCCGTCCAGCAGCGA 60.361 61.111 0.00 0.00 0.00 4.93
2648 2776 2.202623 GTAGTCCGTCCAGCAGCG 60.203 66.667 0.00 0.00 0.00 5.18
2649 2777 2.184579 GGTAGTCCGTCCAGCAGC 59.815 66.667 0.00 0.00 0.00 5.25
2650 2778 1.258445 AAGGGTAGTCCGTCCAGCAG 61.258 60.000 0.00 0.00 41.52 4.24
2651 2779 1.229082 AAGGGTAGTCCGTCCAGCA 60.229 57.895 0.00 0.00 41.52 4.41
2652 2780 1.218316 CAAGGGTAGTCCGTCCAGC 59.782 63.158 0.00 0.00 41.52 4.85
2653 2781 0.531200 GACAAGGGTAGTCCGTCCAG 59.469 60.000 0.00 0.00 41.52 3.86
2654 2782 0.901580 GGACAAGGGTAGTCCGTCCA 60.902 60.000 0.00 0.00 45.35 4.02
2655 2783 1.895966 GGACAAGGGTAGTCCGTCC 59.104 63.158 0.00 0.00 45.35 4.79
2660 2788 4.287766 ACAGATTTGGACAAGGGTAGTC 57.712 45.455 0.00 0.00 35.29 2.59
2661 2789 4.724279 AACAGATTTGGACAAGGGTAGT 57.276 40.909 0.00 0.00 0.00 2.73
2662 2790 5.534654 TCAAAACAGATTTGGACAAGGGTAG 59.465 40.000 3.51 0.00 46.85 3.18
2663 2791 5.450453 TCAAAACAGATTTGGACAAGGGTA 58.550 37.500 3.51 0.00 46.85 3.69
2664 2792 4.285863 TCAAAACAGATTTGGACAAGGGT 58.714 39.130 3.51 0.00 46.85 4.34
2665 2793 4.342092 ACTCAAAACAGATTTGGACAAGGG 59.658 41.667 3.51 0.00 46.85 3.95
2666 2794 5.067674 TCACTCAAAACAGATTTGGACAAGG 59.932 40.000 3.51 0.00 46.85 3.61
2667 2795 6.135290 TCACTCAAAACAGATTTGGACAAG 57.865 37.500 3.51 0.00 46.85 3.16
2668 2796 6.547141 AGATCACTCAAAACAGATTTGGACAA 59.453 34.615 3.51 0.00 46.85 3.18
2669 2797 6.064060 AGATCACTCAAAACAGATTTGGACA 58.936 36.000 3.51 0.00 46.85 4.02
2670 2798 6.566197 AGATCACTCAAAACAGATTTGGAC 57.434 37.500 3.51 0.00 46.85 4.02
2671 2799 6.207417 GGAAGATCACTCAAAACAGATTTGGA 59.793 38.462 3.51 0.00 46.85 3.53
2672 2800 6.016024 TGGAAGATCACTCAAAACAGATTTGG 60.016 38.462 3.51 0.00 46.85 3.28
2673 2801 7.469043 TGTGGAAGATCACTCAAAACAGATTTG 60.469 37.037 0.00 0.00 41.05 2.32
2674 2802 6.547141 TGTGGAAGATCACTCAAAACAGATTT 59.453 34.615 0.00 0.00 38.40 2.17
2675 2803 6.064060 TGTGGAAGATCACTCAAAACAGATT 58.936 36.000 0.00 0.00 38.40 2.40
2676 2804 5.624159 TGTGGAAGATCACTCAAAACAGAT 58.376 37.500 0.00 0.00 38.40 2.90
2677 2805 5.034852 TGTGGAAGATCACTCAAAACAGA 57.965 39.130 0.00 0.00 38.40 3.41
2678 2806 5.471116 TGATGTGGAAGATCACTCAAAACAG 59.529 40.000 0.00 0.00 42.23 3.16
2679 2807 5.375773 TGATGTGGAAGATCACTCAAAACA 58.624 37.500 0.00 0.00 42.23 2.83
2680 2808 5.947228 TGATGTGGAAGATCACTCAAAAC 57.053 39.130 0.00 0.00 42.23 2.43
2688 2816 2.008543 GCGCAGTGATGTGGAAGATCA 61.009 52.381 0.30 0.00 45.20 2.92
2689 2817 0.654683 GCGCAGTGATGTGGAAGATC 59.345 55.000 0.30 0.00 37.09 2.75
2690 2818 0.251354 AGCGCAGTGATGTGGAAGAT 59.749 50.000 11.47 0.00 0.00 2.40
2691 2819 0.035317 AAGCGCAGTGATGTGGAAGA 59.965 50.000 11.47 0.00 0.00 2.87
2692 2820 0.167470 CAAGCGCAGTGATGTGGAAG 59.833 55.000 11.47 0.00 0.00 3.46
2693 2821 0.250252 TCAAGCGCAGTGATGTGGAA 60.250 50.000 11.47 0.00 0.00 3.53
2694 2822 0.036105 ATCAAGCGCAGTGATGTGGA 60.036 50.000 21.61 0.00 34.40 4.02
2695 2823 0.098200 CATCAAGCGCAGTGATGTGG 59.902 55.000 30.94 16.16 44.84 4.17
2696 2824 3.598678 CATCAAGCGCAGTGATGTG 57.401 52.632 30.94 17.95 44.84 3.21
2699 2827 1.812235 TTGACATCAAGCGCAGTGAT 58.188 45.000 17.96 17.96 36.11 3.06
2700 2828 1.465777 CATTGACATCAAGCGCAGTGA 59.534 47.619 11.47 13.69 39.47 3.41
2701 2829 1.465777 TCATTGACATCAAGCGCAGTG 59.534 47.619 11.47 7.59 39.47 3.66
2702 2830 1.812235 TCATTGACATCAAGCGCAGT 58.188 45.000 11.47 0.00 39.47 4.40
2703 2831 2.096980 ACATCATTGACATCAAGCGCAG 59.903 45.455 11.47 0.72 39.47 5.18
2704 2832 2.086094 ACATCATTGACATCAAGCGCA 58.914 42.857 11.47 0.00 39.47 6.09
2705 2833 2.447250 CACATCATTGACATCAAGCGC 58.553 47.619 0.00 0.00 39.47 5.92
2706 2834 2.447250 GCACATCATTGACATCAAGCG 58.553 47.619 0.23 0.00 39.47 4.68
2707 2835 2.426024 AGGCACATCATTGACATCAAGC 59.574 45.455 0.23 0.00 39.47 4.01
2708 2836 3.945921 AGAGGCACATCATTGACATCAAG 59.054 43.478 0.23 0.00 39.47 3.02
2709 2837 3.692593 CAGAGGCACATCATTGACATCAA 59.307 43.478 0.00 0.00 40.51 2.57
2710 2838 3.275999 CAGAGGCACATCATTGACATCA 58.724 45.455 0.00 0.00 0.00 3.07
2711 2839 2.617308 CCAGAGGCACATCATTGACATC 59.383 50.000 0.00 0.00 0.00 3.06
2712 2840 2.651455 CCAGAGGCACATCATTGACAT 58.349 47.619 0.00 0.00 0.00 3.06
2713 2841 1.340308 CCCAGAGGCACATCATTGACA 60.340 52.381 0.00 0.00 0.00 3.58
2714 2842 1.386533 CCCAGAGGCACATCATTGAC 58.613 55.000 0.00 0.00 0.00 3.18
2715 2843 3.888424 CCCAGAGGCACATCATTGA 57.112 52.632 0.00 0.00 0.00 2.57
2726 2854 0.675633 CTTTGTTTGGTGCCCAGAGG 59.324 55.000 0.00 0.00 33.81 3.69
2727 2855 1.610522 CTCTTTGTTTGGTGCCCAGAG 59.389 52.381 0.00 0.00 33.81 3.35
2728 2856 1.214175 TCTCTTTGTTTGGTGCCCAGA 59.786 47.619 0.00 0.00 33.81 3.86
2729 2857 1.691196 TCTCTTTGTTTGGTGCCCAG 58.309 50.000 0.00 0.00 33.81 4.45
2730 2858 2.380064 ATCTCTTTGTTTGGTGCCCA 57.620 45.000 0.00 0.00 0.00 5.36
2731 2859 2.627699 TGAATCTCTTTGTTTGGTGCCC 59.372 45.455 0.00 0.00 0.00 5.36
2732 2860 3.858503 GCTGAATCTCTTTGTTTGGTGCC 60.859 47.826 0.00 0.00 0.00 5.01
2733 2861 3.311966 GCTGAATCTCTTTGTTTGGTGC 58.688 45.455 0.00 0.00 0.00 5.01
2734 2862 3.558505 CGCTGAATCTCTTTGTTTGGTG 58.441 45.455 0.00 0.00 0.00 4.17
2735 2863 2.554032 CCGCTGAATCTCTTTGTTTGGT 59.446 45.455 0.00 0.00 0.00 3.67
2736 2864 2.095059 CCCGCTGAATCTCTTTGTTTGG 60.095 50.000 0.00 0.00 0.00 3.28
2737 2865 2.669391 GCCCGCTGAATCTCTTTGTTTG 60.669 50.000 0.00 0.00 0.00 2.93
2738 2866 1.541588 GCCCGCTGAATCTCTTTGTTT 59.458 47.619 0.00 0.00 0.00 2.83
2739 2867 1.168714 GCCCGCTGAATCTCTTTGTT 58.831 50.000 0.00 0.00 0.00 2.83
2740 2868 0.326264 AGCCCGCTGAATCTCTTTGT 59.674 50.000 0.00 0.00 0.00 2.83
2741 2869 1.457346 AAGCCCGCTGAATCTCTTTG 58.543 50.000 0.00 0.00 0.00 2.77
2742 2870 2.206576 AAAGCCCGCTGAATCTCTTT 57.793 45.000 0.00 0.00 0.00 2.52
2743 2871 2.087646 GAAAAGCCCGCTGAATCTCTT 58.912 47.619 0.00 0.00 0.00 2.85
2744 2872 1.280421 AGAAAAGCCCGCTGAATCTCT 59.720 47.619 0.00 0.00 0.00 3.10
2745 2873 1.743996 AGAAAAGCCCGCTGAATCTC 58.256 50.000 0.00 0.00 0.00 2.75
2746 2874 2.206576 AAGAAAAGCCCGCTGAATCT 57.793 45.000 0.00 0.00 0.00 2.40
2747 2875 2.599659 CAAAGAAAAGCCCGCTGAATC 58.400 47.619 0.00 0.00 0.00 2.52
2748 2876 1.273327 CCAAAGAAAAGCCCGCTGAAT 59.727 47.619 0.00 0.00 0.00 2.57
2749 2877 0.673437 CCAAAGAAAAGCCCGCTGAA 59.327 50.000 0.00 0.00 0.00 3.02
2750 2878 1.178534 CCCAAAGAAAAGCCCGCTGA 61.179 55.000 0.00 0.00 0.00 4.26
2751 2879 1.290009 CCCAAAGAAAAGCCCGCTG 59.710 57.895 0.00 0.00 0.00 5.18
2752 2880 2.574018 GCCCAAAGAAAAGCCCGCT 61.574 57.895 0.00 0.00 0.00 5.52
2753 2881 2.048222 GCCCAAAGAAAAGCCCGC 60.048 61.111 0.00 0.00 0.00 6.13
2754 2882 2.258286 CGCCCAAAGAAAAGCCCG 59.742 61.111 0.00 0.00 0.00 6.13
2755 2883 2.656646 CCGCCCAAAGAAAAGCCC 59.343 61.111 0.00 0.00 0.00 5.19
2756 2884 2.656646 CCCGCCCAAAGAAAAGCC 59.343 61.111 0.00 0.00 0.00 4.35
2757 2885 1.906333 TCCCCGCCCAAAGAAAAGC 60.906 57.895 0.00 0.00 0.00 3.51
2758 2886 0.825840 TGTCCCCGCCCAAAGAAAAG 60.826 55.000 0.00 0.00 0.00 2.27
2759 2887 0.825840 CTGTCCCCGCCCAAAGAAAA 60.826 55.000 0.00 0.00 0.00 2.29
2760 2888 1.228429 CTGTCCCCGCCCAAAGAAA 60.228 57.895 0.00 0.00 0.00 2.52
2761 2889 1.497309 ATCTGTCCCCGCCCAAAGAA 61.497 55.000 0.00 0.00 0.00 2.52
2762 2890 1.910580 GATCTGTCCCCGCCCAAAGA 61.911 60.000 0.00 0.00 0.00 2.52
2763 2891 1.452108 GATCTGTCCCCGCCCAAAG 60.452 63.158 0.00 0.00 0.00 2.77
2764 2892 2.196997 CTGATCTGTCCCCGCCCAAA 62.197 60.000 0.00 0.00 0.00 3.28
2765 2893 2.609299 TGATCTGTCCCCGCCCAA 60.609 61.111 0.00 0.00 0.00 4.12
2766 2894 2.896677 ATCTGATCTGTCCCCGCCCA 62.897 60.000 0.00 0.00 0.00 5.36
2767 2895 2.105806 GATCTGATCTGTCCCCGCCC 62.106 65.000 10.37 0.00 0.00 6.13
2768 2896 1.118356 AGATCTGATCTGTCCCCGCC 61.118 60.000 18.93 0.00 38.44 6.13
2769 2897 0.316841 GAGATCTGATCTGTCCCCGC 59.683 60.000 24.04 4.85 40.38 6.13
2770 2898 0.595588 CGAGATCTGATCTGTCCCCG 59.404 60.000 24.04 16.24 40.38 5.73
2771 2899 0.965439 CCGAGATCTGATCTGTCCCC 59.035 60.000 24.04 8.79 40.38 4.81
2772 2900 0.965439 CCCGAGATCTGATCTGTCCC 59.035 60.000 24.04 9.14 40.38 4.46
2773 2901 1.339610 CACCCGAGATCTGATCTGTCC 59.660 57.143 24.04 9.48 40.38 4.02
2774 2902 1.339610 CCACCCGAGATCTGATCTGTC 59.660 57.143 24.04 10.39 40.38 3.51
2775 2903 1.407936 CCACCCGAGATCTGATCTGT 58.592 55.000 24.04 13.18 40.38 3.41
2776 2904 0.033228 GCCACCCGAGATCTGATCTG 59.967 60.000 24.04 15.24 40.38 2.90
2777 2905 0.397675 TGCCACCCGAGATCTGATCT 60.398 55.000 19.63 19.63 43.70 2.75
2778 2906 0.465705 TTGCCACCCGAGATCTGATC 59.534 55.000 9.65 9.65 0.00 2.92
2779 2907 0.911769 TTTGCCACCCGAGATCTGAT 59.088 50.000 0.00 0.00 0.00 2.90
2780 2908 0.911769 ATTTGCCACCCGAGATCTGA 59.088 50.000 0.00 0.00 0.00 3.27
2781 2909 1.019673 CATTTGCCACCCGAGATCTG 58.980 55.000 0.00 0.00 0.00 2.90
2782 2910 0.749454 GCATTTGCCACCCGAGATCT 60.749 55.000 0.00 0.00 34.31 2.75
2783 2911 1.031571 TGCATTTGCCACCCGAGATC 61.032 55.000 0.00 0.00 41.18 2.75
2784 2912 0.611618 TTGCATTTGCCACCCGAGAT 60.612 50.000 0.00 0.00 41.18 2.75
2785 2913 0.825425 TTTGCATTTGCCACCCGAGA 60.825 50.000 0.00 0.00 41.18 4.04
2786 2914 0.388907 CTTTGCATTTGCCACCCGAG 60.389 55.000 0.00 0.00 41.18 4.63
2787 2915 1.112315 ACTTTGCATTTGCCACCCGA 61.112 50.000 0.00 0.00 41.18 5.14
2788 2916 0.249826 AACTTTGCATTTGCCACCCG 60.250 50.000 0.00 0.00 41.18 5.28
2789 2917 2.805671 GTTAACTTTGCATTTGCCACCC 59.194 45.455 0.00 0.00 41.18 4.61
2790 2918 3.494251 CAGTTAACTTTGCATTTGCCACC 59.506 43.478 5.07 0.00 41.18 4.61
2791 2919 3.494251 CCAGTTAACTTTGCATTTGCCAC 59.506 43.478 5.07 0.00 41.18 5.01
2792 2920 3.494048 CCCAGTTAACTTTGCATTTGCCA 60.494 43.478 5.07 0.00 41.18 4.92
2793 2921 3.066380 CCCAGTTAACTTTGCATTTGCC 58.934 45.455 5.07 0.00 41.18 4.52
2794 2922 3.988819 TCCCAGTTAACTTTGCATTTGC 58.011 40.909 5.07 0.00 42.50 3.68
2795 2923 4.039124 ACCTCCCAGTTAACTTTGCATTTG 59.961 41.667 5.07 0.00 0.00 2.32
2796 2924 4.039124 CACCTCCCAGTTAACTTTGCATTT 59.961 41.667 5.07 0.00 0.00 2.32
2797 2925 3.573967 CACCTCCCAGTTAACTTTGCATT 59.426 43.478 5.07 0.00 0.00 3.56
2798 2926 3.157087 CACCTCCCAGTTAACTTTGCAT 58.843 45.455 5.07 0.00 0.00 3.96
2799 2927 2.582052 CACCTCCCAGTTAACTTTGCA 58.418 47.619 5.07 0.00 0.00 4.08
2800 2928 1.886542 CCACCTCCCAGTTAACTTTGC 59.113 52.381 5.07 0.00 0.00 3.68
2801 2929 3.223674 ACCACCTCCCAGTTAACTTTG 57.776 47.619 5.07 0.00 0.00 2.77
2802 2930 3.958147 CAAACCACCTCCCAGTTAACTTT 59.042 43.478 5.07 0.00 0.00 2.66
2803 2931 3.562182 CAAACCACCTCCCAGTTAACTT 58.438 45.455 5.07 0.00 0.00 2.66
2804 2932 2.751816 GCAAACCACCTCCCAGTTAACT 60.752 50.000 1.12 1.12 0.00 2.24
2805 2933 1.611977 GCAAACCACCTCCCAGTTAAC 59.388 52.381 0.00 0.00 0.00 2.01
2806 2934 1.479757 GGCAAACCACCTCCCAGTTAA 60.480 52.381 0.00 0.00 35.26 2.01
2807 2935 0.111639 GGCAAACCACCTCCCAGTTA 59.888 55.000 0.00 0.00 35.26 2.24
2808 2936 1.152546 GGCAAACCACCTCCCAGTT 60.153 57.895 0.00 0.00 35.26 3.16
2809 2937 2.391130 TGGCAAACCACCTCCCAGT 61.391 57.895 0.00 0.00 42.67 4.00
2810 2938 2.520458 TGGCAAACCACCTCCCAG 59.480 61.111 0.00 0.00 42.67 4.45
2818 2946 2.611225 GTTTGTGGATTGGCAAACCA 57.389 45.000 23.54 23.54 44.94 3.67
2821 2949 2.158842 CCCAAGTTTGTGGATTGGCAAA 60.159 45.455 3.01 0.00 41.79 3.68
2822 2950 1.415659 CCCAAGTTTGTGGATTGGCAA 59.584 47.619 0.68 0.68 41.79 4.52
2823 2951 1.047002 CCCAAGTTTGTGGATTGGCA 58.953 50.000 0.00 0.00 41.79 4.92
2824 2952 1.047801 ACCCAAGTTTGTGGATTGGC 58.952 50.000 0.00 0.00 41.79 4.52
2825 2953 2.818130 CACCCAAGTTTGTGGATTGG 57.182 50.000 6.44 0.00 41.65 3.16
2831 2959 1.741525 CAGGCCACCCAAGTTTGTG 59.258 57.895 5.01 0.00 0.00 3.33
2832 2960 1.457455 CCAGGCCACCCAAGTTTGT 60.457 57.895 5.01 0.00 0.00 2.83
2833 2961 2.209315 CCCAGGCCACCCAAGTTTG 61.209 63.158 5.01 0.00 0.00 2.93
2834 2962 1.365105 TACCCAGGCCACCCAAGTTT 61.365 55.000 5.01 0.00 0.00 2.66
2835 2963 1.146544 ATACCCAGGCCACCCAAGTT 61.147 55.000 5.01 0.00 0.00 2.66
2836 2964 1.543896 ATACCCAGGCCACCCAAGT 60.544 57.895 5.01 0.00 0.00 3.16
2837 2965 1.227383 GATACCCAGGCCACCCAAG 59.773 63.158 5.01 0.00 0.00 3.61
2838 2966 2.313427 GGATACCCAGGCCACCCAA 61.313 63.158 5.01 0.00 0.00 4.12
2839 2967 2.694616 GGATACCCAGGCCACCCA 60.695 66.667 5.01 0.00 0.00 4.51
2840 2968 2.368329 AGGATACCCAGGCCACCC 60.368 66.667 5.01 0.00 33.88 4.61
2841 2969 2.808206 CGAGGATACCCAGGCCACC 61.808 68.421 5.01 0.00 33.88 4.61
2842 2970 1.760875 TCGAGGATACCCAGGCCAC 60.761 63.158 5.01 0.00 33.88 5.01
2843 2971 1.760875 GTCGAGGATACCCAGGCCA 60.761 63.158 5.01 0.00 33.88 5.36
2844 2972 2.508751 GGTCGAGGATACCCAGGCC 61.509 68.421 0.00 0.00 31.78 5.19
2845 2973 1.457831 AGGTCGAGGATACCCAGGC 60.458 63.158 0.00 0.00 37.77 4.85
2846 2974 1.173444 CGAGGTCGAGGATACCCAGG 61.173 65.000 0.00 0.00 43.02 4.45
2847 2975 0.179026 TCGAGGTCGAGGATACCCAG 60.179 60.000 0.00 0.00 44.22 4.45
2848 2976 1.917495 TCGAGGTCGAGGATACCCA 59.083 57.895 0.00 0.00 44.22 4.51
2849 2977 4.894201 TCGAGGTCGAGGATACCC 57.106 61.111 0.00 0.00 44.22 3.69
2858 2986 3.217599 TGAGAGAATTTGTCGAGGTCG 57.782 47.619 0.00 0.00 41.45 4.79
2859 2987 3.369451 GCTTGAGAGAATTTGTCGAGGTC 59.631 47.826 0.00 0.00 32.42 3.85
2860 2988 3.330267 GCTTGAGAGAATTTGTCGAGGT 58.670 45.455 0.00 0.00 32.42 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.