Multiple sequence alignment - TraesCS3A01G102500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G102500 chr3A 100.000 2584 0 0 1 2584 66253066 66255649 0.000000e+00 4772.0
1 TraesCS3A01G102500 chr3A 84.783 276 41 1 2307 2582 38494177 38494451 2.530000e-70 276.0
2 TraesCS3A01G102500 chr3A 96.040 101 3 1 255 354 719688805 719688705 2.060000e-36 163.0
3 TraesCS3A01G102500 chr3A 81.250 96 18 0 259 354 49683102 49683197 7.670000e-11 78.7
4 TraesCS3A01G102500 chr6A 85.915 1427 133 41 350 1736 16704709 16706107 0.000000e+00 1459.0
5 TraesCS3A01G102500 chr6A 87.174 998 81 31 735 1706 16656007 16655031 0.000000e+00 1090.0
6 TraesCS3A01G102500 chr6A 83.744 406 47 12 1740 2137 16706303 16706697 1.460000e-97 366.0
7 TraesCS3A01G102500 chr6A 89.299 271 23 5 1923 2188 16654476 16654207 4.120000e-88 335.0
8 TraesCS3A01G102500 chr6A 87.097 248 27 2 9 256 16704475 16704717 2.530000e-70 276.0
9 TraesCS3A01G102500 chr6A 84.364 275 34 4 2308 2582 612576700 612576435 7.090000e-66 261.0
10 TraesCS3A01G102500 chr6A 95.876 97 4 0 258 354 549168448 549168544 9.570000e-35 158.0
11 TraesCS3A01G102500 chr6B 91.765 1020 68 13 728 1741 28722185 28723194 0.000000e+00 1404.0
12 TraesCS3A01G102500 chr6B 91.198 977 70 13 772 1741 28942314 28943281 0.000000e+00 1314.0
13 TraesCS3A01G102500 chr6B 85.299 1102 102 38 671 1738 29044424 29045499 0.000000e+00 1083.0
14 TraesCS3A01G102500 chr6B 89.845 837 68 15 761 1593 59298794 59299617 0.000000e+00 1059.0
15 TraesCS3A01G102500 chr6B 86.224 1009 79 38 728 1714 28513690 28512720 0.000000e+00 1038.0
16 TraesCS3A01G102500 chr6B 87.041 463 38 14 1740 2191 29045641 29046092 1.070000e-138 503.0
17 TraesCS3A01G102500 chr6B 86.350 337 39 6 1928 2261 28512238 28511906 6.800000e-96 361.0
18 TraesCS3A01G102500 chr6B 88.727 275 22 4 1740 2010 28943331 28943600 6.890000e-86 327.0
19 TraesCS3A01G102500 chr6B 88.364 275 21 5 1740 2010 28723244 28723511 1.150000e-83 320.0
20 TraesCS3A01G102500 chr6B 84.727 275 41 1 2308 2582 592450710 592450437 9.110000e-70 274.0
21 TraesCS3A01G102500 chr6B 92.353 170 13 0 4 173 29044119 29044288 2.570000e-60 243.0
22 TraesCS3A01G102500 chr6B 87.879 198 15 2 68 256 28721652 28721849 9.310000e-55 224.0
23 TraesCS3A01G102500 chr6B 94.949 99 5 0 1966 2064 28723498 28723596 3.440000e-34 156.0
24 TraesCS3A01G102500 chr6B 98.462 65 1 0 2000 2064 28943621 28943685 5.840000e-22 115.0
25 TraesCS3A01G102500 chr6B 82.927 82 13 1 273 354 664202382 664202302 3.570000e-09 73.1
26 TraesCS3A01G102500 chr6D 85.604 1167 89 42 621 1738 16514233 16515369 0.000000e+00 1151.0
27 TraesCS3A01G102500 chr6D 88.313 984 77 27 759 1714 16386785 16385812 0.000000e+00 1146.0
28 TraesCS3A01G102500 chr6D 84.140 599 57 19 1740 2313 16515562 16516147 1.750000e-151 545.0
29 TraesCS3A01G102500 chr6D 89.286 252 27 0 4 255 16513775 16514026 1.490000e-82 316.0
30 TraesCS3A01G102500 chr6D 91.743 218 17 1 350 566 16514019 16514236 4.180000e-78 302.0
31 TraesCS3A01G102500 chr6D 87.097 186 22 2 1921 2104 16385343 16385158 2.610000e-50 209.0
32 TraesCS3A01G102500 chr1B 87.610 912 68 24 761 1668 587501537 587500667 0.000000e+00 1016.0
33 TraesCS3A01G102500 chr1B 82.143 196 16 6 1740 1922 587500404 587500215 1.600000e-32 150.0
34 TraesCS3A01G102500 chr2D 85.870 276 37 2 2308 2582 618383140 618383414 2.510000e-75 292.0
35 TraesCS3A01G102500 chr7B 96.970 99 3 0 256 354 89885711 89885809 1.590000e-37 167.0
36 TraesCS3A01G102500 chr4B 96.939 98 3 0 257 354 579995442 579995539 5.720000e-37 165.0
37 TraesCS3A01G102500 chr5A 95.918 98 4 0 257 354 18064748 18064651 2.660000e-35 159.0
38 TraesCS3A01G102500 chr7A 95.000 100 4 1 255 354 112711698 112711796 3.440000e-34 156.0
39 TraesCS3A01G102500 chr2A 79.167 96 20 0 259 354 552092792 552092887 1.660000e-07 67.6
40 TraesCS3A01G102500 chr2A 75.887 141 27 6 2307 2444 721645993 721646129 5.970000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G102500 chr3A 66253066 66255649 2583 False 4772.000000 4772 100.000000 1 2584 1 chr3A.!!$F3 2583
1 TraesCS3A01G102500 chr6A 16654207 16656007 1800 True 712.500000 1090 88.236500 735 2188 2 chr6A.!!$R2 1453
2 TraesCS3A01G102500 chr6A 16704475 16706697 2222 False 700.333333 1459 85.585333 9 2137 3 chr6A.!!$F2 2128
3 TraesCS3A01G102500 chr6B 59298794 59299617 823 False 1059.000000 1059 89.845000 761 1593 1 chr6B.!!$F1 832
4 TraesCS3A01G102500 chr6B 28511906 28513690 1784 True 699.500000 1038 86.287000 728 2261 2 chr6B.!!$R3 1533
5 TraesCS3A01G102500 chr6B 29044119 29046092 1973 False 609.666667 1083 88.231000 4 2191 3 chr6B.!!$F4 2187
6 TraesCS3A01G102500 chr6B 28942314 28943685 1371 False 585.333333 1314 92.795667 772 2064 3 chr6B.!!$F3 1292
7 TraesCS3A01G102500 chr6B 28721652 28723596 1944 False 526.000000 1404 90.739250 68 2064 4 chr6B.!!$F2 1996
8 TraesCS3A01G102500 chr6D 16385158 16386785 1627 True 677.500000 1146 87.705000 759 2104 2 chr6D.!!$R1 1345
9 TraesCS3A01G102500 chr6D 16513775 16516147 2372 False 578.500000 1151 87.693250 4 2313 4 chr6D.!!$F1 2309
10 TraesCS3A01G102500 chr1B 587500215 587501537 1322 True 583.000000 1016 84.876500 761 1922 2 chr1B.!!$R1 1161

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
358 368 0.179034 GCATCTCCCTAGCCAACCTG 60.179 60.0 0.0 0.0 0.0 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1593 1763 0.0293 ACGCAAGCACACATGAACAC 59.971 50.0 0.0 0.0 45.62 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 5.632034 ACCTAGATCTGGTTTACCCAATC 57.368 43.478 5.18 0.18 44.65 2.67
74 75 1.397672 TAGCTTTGCTTGGTGTTGCA 58.602 45.000 0.00 0.00 40.44 4.08
209 217 0.337428 GGGTGGTGGGTAGTAGGAGA 59.663 60.000 0.00 0.00 0.00 3.71
233 243 0.249280 TTCACATGTGACGTGCGTCT 60.249 50.000 27.88 3.07 44.80 4.18
234 244 0.594110 TCACATGTGACGTGCGTCTA 59.406 50.000 24.56 13.54 44.80 2.59
245 255 0.529992 GTGCGTCTAGTGGGGCATAC 60.530 60.000 0.00 0.00 37.77 2.39
247 257 1.362717 CGTCTAGTGGGGCATACCG 59.637 63.158 0.00 0.00 41.60 4.02
248 258 1.746517 GTCTAGTGGGGCATACCGG 59.253 63.158 0.00 0.00 41.60 5.28
249 259 2.138179 TCTAGTGGGGCATACCGGC 61.138 63.158 0.00 0.00 41.60 6.13
257 267 4.012138 GCATACCGGCCAACCTTT 57.988 55.556 0.00 0.00 0.00 3.11
258 268 2.272923 GCATACCGGCCAACCTTTT 58.727 52.632 0.00 0.00 0.00 2.27
259 269 0.606096 GCATACCGGCCAACCTTTTT 59.394 50.000 0.00 0.00 0.00 1.94
288 298 7.772332 TGCGATAGAAAGAGAGTTTTATTCC 57.228 36.000 0.00 0.00 39.76 3.01
289 299 7.327975 TGCGATAGAAAGAGAGTTTTATTCCA 58.672 34.615 0.00 0.00 39.76 3.53
290 300 7.987458 TGCGATAGAAAGAGAGTTTTATTCCAT 59.013 33.333 0.00 0.00 39.76 3.41
291 301 9.477484 GCGATAGAAAGAGAGTTTTATTCCATA 57.523 33.333 0.00 0.00 39.76 2.74
296 306 9.692325 AGAAAGAGAGTTTTATTCCATAAGCAT 57.308 29.630 0.00 0.00 0.00 3.79
299 309 9.566432 AAGAGAGTTTTATTCCATAAGCATAGG 57.434 33.333 0.00 0.00 0.00 2.57
300 310 8.160106 AGAGAGTTTTATTCCATAAGCATAGGG 58.840 37.037 0.00 0.00 34.20 3.53
301 311 7.816411 AGAGTTTTATTCCATAAGCATAGGGT 58.184 34.615 0.00 0.00 34.54 4.34
302 312 8.282256 AGAGTTTTATTCCATAAGCATAGGGTT 58.718 33.333 0.00 0.00 34.54 4.11
303 313 9.569122 GAGTTTTATTCCATAAGCATAGGGTTA 57.431 33.333 1.06 1.06 40.88 2.85
304 314 9.350951 AGTTTTATTCCATAAGCATAGGGTTAC 57.649 33.333 0.51 0.00 39.57 2.50
305 315 7.972832 TTTATTCCATAAGCATAGGGTTACG 57.027 36.000 0.51 0.00 39.57 3.18
306 316 5.818678 ATTCCATAAGCATAGGGTTACGA 57.181 39.130 0.51 0.00 39.57 3.43
307 317 5.818678 TTCCATAAGCATAGGGTTACGAT 57.181 39.130 0.51 0.00 39.57 3.73
308 318 5.401531 TCCATAAGCATAGGGTTACGATC 57.598 43.478 0.51 0.00 39.57 3.69
309 319 4.836175 TCCATAAGCATAGGGTTACGATCA 59.164 41.667 0.51 0.00 39.57 2.92
310 320 5.305902 TCCATAAGCATAGGGTTACGATCAA 59.694 40.000 0.51 0.00 39.57 2.57
311 321 5.639506 CCATAAGCATAGGGTTACGATCAAG 59.360 44.000 0.51 0.00 39.57 3.02
312 322 6.455647 CATAAGCATAGGGTTACGATCAAGA 58.544 40.000 0.51 0.00 39.57 3.02
313 323 4.592485 AGCATAGGGTTACGATCAAGAG 57.408 45.455 0.00 0.00 0.00 2.85
314 324 3.322254 AGCATAGGGTTACGATCAAGAGG 59.678 47.826 0.00 0.00 0.00 3.69
315 325 3.654414 CATAGGGTTACGATCAAGAGGC 58.346 50.000 0.00 0.00 0.00 4.70
316 326 1.568504 AGGGTTACGATCAAGAGGCA 58.431 50.000 0.00 0.00 0.00 4.75
317 327 1.207329 AGGGTTACGATCAAGAGGCAC 59.793 52.381 0.00 0.00 0.00 5.01
318 328 1.653151 GGTTACGATCAAGAGGCACC 58.347 55.000 0.00 0.00 0.00 5.01
319 329 1.066430 GGTTACGATCAAGAGGCACCA 60.066 52.381 0.00 0.00 0.00 4.17
320 330 2.614481 GGTTACGATCAAGAGGCACCAA 60.614 50.000 0.00 0.00 0.00 3.67
321 331 3.071479 GTTACGATCAAGAGGCACCAAA 58.929 45.455 0.00 0.00 0.00 3.28
322 332 2.496899 ACGATCAAGAGGCACCAAAT 57.503 45.000 0.00 0.00 0.00 2.32
323 333 2.359900 ACGATCAAGAGGCACCAAATC 58.640 47.619 0.00 0.00 0.00 2.17
324 334 2.026822 ACGATCAAGAGGCACCAAATCT 60.027 45.455 0.00 0.00 0.00 2.40
325 335 3.012518 CGATCAAGAGGCACCAAATCTT 58.987 45.455 0.00 0.00 33.62 2.40
326 336 3.064545 CGATCAAGAGGCACCAAATCTTC 59.935 47.826 0.00 0.00 30.99 2.87
327 337 3.507162 TCAAGAGGCACCAAATCTTCA 57.493 42.857 0.00 0.00 30.99 3.02
328 338 3.831323 TCAAGAGGCACCAAATCTTCAA 58.169 40.909 0.00 0.00 30.99 2.69
329 339 4.410099 TCAAGAGGCACCAAATCTTCAAT 58.590 39.130 0.00 0.00 30.99 2.57
330 340 5.569355 TCAAGAGGCACCAAATCTTCAATA 58.431 37.500 0.00 0.00 30.99 1.90
331 341 5.415701 TCAAGAGGCACCAAATCTTCAATAC 59.584 40.000 0.00 0.00 30.99 1.89
332 342 4.922206 AGAGGCACCAAATCTTCAATACA 58.078 39.130 0.00 0.00 0.00 2.29
333 343 5.324409 AGAGGCACCAAATCTTCAATACAA 58.676 37.500 0.00 0.00 0.00 2.41
334 344 5.416952 AGAGGCACCAAATCTTCAATACAAG 59.583 40.000 0.00 0.00 0.00 3.16
335 345 4.463891 AGGCACCAAATCTTCAATACAAGG 59.536 41.667 0.00 0.00 0.00 3.61
336 346 4.462483 GGCACCAAATCTTCAATACAAGGA 59.538 41.667 0.00 0.00 0.00 3.36
337 347 5.393461 GGCACCAAATCTTCAATACAAGGAG 60.393 44.000 0.00 0.00 0.00 3.69
338 348 5.393461 GCACCAAATCTTCAATACAAGGAGG 60.393 44.000 0.00 0.00 0.00 4.30
339 349 5.126061 CACCAAATCTTCAATACAAGGAGGG 59.874 44.000 0.00 0.00 0.00 4.30
340 350 4.098501 CCAAATCTTCAATACAAGGAGGGC 59.901 45.833 0.00 0.00 0.00 5.19
341 351 4.591321 AATCTTCAATACAAGGAGGGCA 57.409 40.909 0.00 0.00 0.00 5.36
342 352 4.803329 ATCTTCAATACAAGGAGGGCAT 57.197 40.909 0.00 0.00 0.00 4.40
343 353 4.156455 TCTTCAATACAAGGAGGGCATC 57.844 45.455 0.00 0.00 0.00 3.91
344 354 3.782523 TCTTCAATACAAGGAGGGCATCT 59.217 43.478 0.00 0.00 0.00 2.90
345 355 3.845781 TCAATACAAGGAGGGCATCTC 57.154 47.619 0.00 0.00 41.71 2.75
358 368 0.179034 GCATCTCCCTAGCCAACCTG 60.179 60.000 0.00 0.00 0.00 4.00
361 371 3.242867 CATCTCCCTAGCCAACCTGATA 58.757 50.000 0.00 0.00 0.00 2.15
437 448 1.887854 TCGTGGTTCGTGGACAATCTA 59.112 47.619 0.00 0.00 40.80 1.98
487 498 1.371183 GGTGTGCAGTCTGGTAGCA 59.629 57.895 1.14 0.00 35.63 3.49
515 526 1.377333 CTGGAGCCGGTTTTCCTCC 60.377 63.158 15.93 15.93 44.28 4.30
516 530 2.045242 GGAGCCGGTTTTCCTCCC 60.045 66.667 12.70 0.00 39.36 4.30
528 542 2.202892 CCTCCCTAAACCGAGCGC 60.203 66.667 0.00 0.00 0.00 5.92
532 546 4.851179 CCTAAACCGAGCGCCCCC 62.851 72.222 2.29 0.00 0.00 5.40
589 605 2.104792 AGTGCACTGCTTCTTTGAGGTA 59.895 45.455 20.97 0.00 0.00 3.08
593 609 4.006319 GCACTGCTTCTTTGAGGTATTCT 58.994 43.478 0.00 0.00 0.00 2.40
616 632 8.483307 TCTTGTAATACCCGTTTCTAATCAAC 57.517 34.615 0.00 0.00 0.00 3.18
864 976 2.356793 GCCATCGATCCGAGGCAG 60.357 66.667 17.19 0.00 43.80 4.85
946 1074 1.762460 CCCCCTCCGTATCAGCACT 60.762 63.158 0.00 0.00 0.00 4.40
948 1076 1.043116 CCCCTCCGTATCAGCACTCA 61.043 60.000 0.00 0.00 0.00 3.41
1464 1614 3.107402 TCACCTCATCCTAGACAGCTT 57.893 47.619 0.00 0.00 0.00 3.74
1490 1641 1.218230 GATCCTCGTCGCTTCATGCC 61.218 60.000 0.00 0.00 38.78 4.40
1503 1670 2.472695 TCATGCCTTCTGTGTGTACC 57.527 50.000 0.00 0.00 0.00 3.34
1508 1675 2.561419 TGCCTTCTGTGTGTACCTAGTC 59.439 50.000 0.00 0.00 0.00 2.59
1578 1745 4.676546 GGCCTTGAAAGAAATAGTGATGC 58.323 43.478 0.00 0.00 0.00 3.91
1585 1752 6.902341 TGAAAGAAATAGTGATGCTGTTGTC 58.098 36.000 0.00 0.00 0.00 3.18
1593 1763 4.001652 AGTGATGCTGTTGTCTGAATCAG 58.998 43.478 3.38 3.38 37.94 2.90
1636 1823 2.750166 CGCCTCAGTTCAGACTCTTCTA 59.250 50.000 0.00 0.00 32.54 2.10
1637 1824 3.191581 CGCCTCAGTTCAGACTCTTCTAA 59.808 47.826 0.00 0.00 32.54 2.10
1658 1845 9.770097 TTCTAAATGCCATTTGTTTATGTCAAA 57.230 25.926 12.86 0.00 38.77 2.69
1770 2301 0.514691 CAAGAACAGCTTGCCGACTC 59.485 55.000 0.00 0.00 46.67 3.36
1776 2309 2.510238 GCTTGCCGACTCGCTCAT 60.510 61.111 0.00 0.00 0.00 2.90
1782 2315 2.627945 TGCCGACTCGCTCATAAATTT 58.372 42.857 0.00 0.00 0.00 1.82
1947 2542 7.933577 TGAGTATTGAGACATGTGAGTTTTTCT 59.066 33.333 1.15 0.00 0.00 2.52
1952 2547 7.715265 TGAGACATGTGAGTTTTTCTTCTAC 57.285 36.000 1.15 0.00 0.00 2.59
2139 2806 2.971330 TGGCAAGAACCATTCACCATTT 59.029 40.909 0.00 0.00 33.75 2.32
2191 2858 8.393366 CCTCATTTGTGTTAGATGATGTTACTG 58.607 37.037 0.00 0.00 0.00 2.74
2207 2874 7.652105 TGATGTTACTGTCTTGTAAGAGTTGTC 59.348 37.037 0.00 0.00 35.32 3.18
2208 2875 7.108841 TGTTACTGTCTTGTAAGAGTTGTCT 57.891 36.000 0.00 0.00 35.32 3.41
2210 2877 5.854010 ACTGTCTTGTAAGAGTTGTCTCA 57.146 39.130 0.00 0.00 42.66 3.27
2216 2883 4.642445 TGTAAGAGTTGTCTCACGTGAA 57.358 40.909 20.49 7.97 42.66 3.18
2218 2885 6.321848 TGTAAGAGTTGTCTCACGTGAATA 57.678 37.500 20.49 7.97 42.66 1.75
2235 2902 8.156553 CACGTGAATATGAAGAAATAGTATCGC 58.843 37.037 10.90 0.00 0.00 4.58
2278 2955 5.471116 TCAAGGTGTCACATCAGATTCTTTG 59.529 40.000 5.12 0.00 0.00 2.77
2325 3002 8.801882 TTTCTGTGAGTTAAATACATTAGGGG 57.198 34.615 0.00 0.00 0.00 4.79
2326 3003 7.504926 TCTGTGAGTTAAATACATTAGGGGT 57.495 36.000 0.00 0.00 0.00 4.95
2327 3004 7.335627 TCTGTGAGTTAAATACATTAGGGGTG 58.664 38.462 0.00 0.00 0.00 4.61
2328 3005 7.023171 TGTGAGTTAAATACATTAGGGGTGT 57.977 36.000 0.00 0.00 0.00 4.16
2329 3006 7.107542 TGTGAGTTAAATACATTAGGGGTGTC 58.892 38.462 0.00 0.00 0.00 3.67
2330 3007 7.037873 TGTGAGTTAAATACATTAGGGGTGTCT 60.038 37.037 0.00 0.00 0.00 3.41
2331 3008 7.494952 GTGAGTTAAATACATTAGGGGTGTCTC 59.505 40.741 0.00 0.00 0.00 3.36
2332 3009 7.181305 TGAGTTAAATACATTAGGGGTGTCTCA 59.819 37.037 0.00 0.00 0.00 3.27
2333 3010 7.924541 AGTTAAATACATTAGGGGTGTCTCAA 58.075 34.615 0.00 0.00 0.00 3.02
2334 3011 7.827729 AGTTAAATACATTAGGGGTGTCTCAAC 59.172 37.037 0.00 0.00 0.00 3.18
2335 3012 6.388619 AAATACATTAGGGGTGTCTCAACT 57.611 37.500 0.00 0.00 0.00 3.16
2336 3013 6.388619 AATACATTAGGGGTGTCTCAACTT 57.611 37.500 0.00 0.00 0.00 2.66
2337 3014 4.021102 ACATTAGGGGTGTCTCAACTTG 57.979 45.455 0.00 0.00 0.00 3.16
2338 3015 3.394606 ACATTAGGGGTGTCTCAACTTGT 59.605 43.478 0.00 0.00 0.00 3.16
2339 3016 4.141251 ACATTAGGGGTGTCTCAACTTGTT 60.141 41.667 0.00 0.00 0.00 2.83
2340 3017 2.640316 AGGGGTGTCTCAACTTGTTC 57.360 50.000 0.00 0.00 0.00 3.18
2341 3018 1.202651 AGGGGTGTCTCAACTTGTTCG 60.203 52.381 0.00 0.00 0.00 3.95
2342 3019 1.226746 GGGTGTCTCAACTTGTTCGG 58.773 55.000 0.00 0.00 0.00 4.30
2343 3020 1.474498 GGGTGTCTCAACTTGTTCGGT 60.474 52.381 0.00 0.00 0.00 4.69
2344 3021 2.224113 GGGTGTCTCAACTTGTTCGGTA 60.224 50.000 0.00 0.00 0.00 4.02
2345 3022 2.798847 GGTGTCTCAACTTGTTCGGTAC 59.201 50.000 0.00 0.00 0.00 3.34
2346 3023 3.450578 GTGTCTCAACTTGTTCGGTACA 58.549 45.455 0.00 0.00 34.12 2.90
2347 3024 3.489785 GTGTCTCAACTTGTTCGGTACAG 59.510 47.826 0.00 0.00 38.19 2.74
2348 3025 3.382227 TGTCTCAACTTGTTCGGTACAGA 59.618 43.478 0.00 0.00 38.19 3.41
2349 3026 3.734735 GTCTCAACTTGTTCGGTACAGAC 59.265 47.826 0.00 0.00 38.19 3.51
2350 3027 3.382227 TCTCAACTTGTTCGGTACAGACA 59.618 43.478 0.00 0.00 38.19 3.41
2351 3028 4.116961 CTCAACTTGTTCGGTACAGACAA 58.883 43.478 0.00 3.49 38.19 3.18
2352 3029 4.699637 TCAACTTGTTCGGTACAGACAAT 58.300 39.130 0.00 0.00 38.19 2.71
2353 3030 5.120399 TCAACTTGTTCGGTACAGACAATT 58.880 37.500 0.00 0.00 38.19 2.32
2354 3031 5.587043 TCAACTTGTTCGGTACAGACAATTT 59.413 36.000 0.00 2.54 38.19 1.82
2355 3032 5.418310 ACTTGTTCGGTACAGACAATTTG 57.582 39.130 0.00 0.00 38.19 2.32
2356 3033 4.274950 ACTTGTTCGGTACAGACAATTTGG 59.725 41.667 0.00 0.00 38.19 3.28
2357 3034 3.811083 TGTTCGGTACAGACAATTTGGT 58.189 40.909 0.00 0.00 31.68 3.67
2358 3035 3.562141 TGTTCGGTACAGACAATTTGGTG 59.438 43.478 0.00 0.77 31.68 4.17
2359 3036 3.478857 TCGGTACAGACAATTTGGTGT 57.521 42.857 10.43 10.43 0.00 4.16
2360 3037 3.395639 TCGGTACAGACAATTTGGTGTC 58.604 45.455 9.25 0.00 46.90 3.67
2393 3070 9.438228 TGTAAAATACATGAAATTGGTACTCGA 57.562 29.630 0.00 0.00 32.89 4.04
2396 3073 8.561738 AAATACATGAAATTGGTACTCGAACT 57.438 30.769 0.00 0.00 0.00 3.01
2397 3074 8.561738 AATACATGAAATTGGTACTCGAACTT 57.438 30.769 0.00 0.00 0.00 2.66
2398 3075 6.877611 ACATGAAATTGGTACTCGAACTTT 57.122 33.333 0.00 0.00 0.00 2.66
2399 3076 6.668323 ACATGAAATTGGTACTCGAACTTTG 58.332 36.000 0.00 0.00 0.00 2.77
2400 3077 6.262273 ACATGAAATTGGTACTCGAACTTTGT 59.738 34.615 0.00 0.00 0.00 2.83
2401 3078 6.687081 TGAAATTGGTACTCGAACTTTGTT 57.313 33.333 0.00 0.00 0.00 2.83
2402 3079 7.090953 TGAAATTGGTACTCGAACTTTGTTT 57.909 32.000 0.00 0.00 0.00 2.83
2403 3080 7.190871 TGAAATTGGTACTCGAACTTTGTTTC 58.809 34.615 0.00 0.00 0.00 2.78
2405 3082 2.540931 TGGTACTCGAACTTTGTTTCGC 59.459 45.455 0.40 0.00 46.46 4.70
2406 3083 2.096565 GGTACTCGAACTTTGTTTCGCC 60.097 50.000 0.40 0.00 46.46 5.54
2407 3084 0.580104 ACTCGAACTTTGTTTCGCCG 59.420 50.000 0.40 0.00 46.46 6.46
2408 3085 0.580104 CTCGAACTTTGTTTCGCCGT 59.420 50.000 0.40 0.00 46.46 5.68
2409 3086 0.302288 TCGAACTTTGTTTCGCCGTG 59.698 50.000 0.40 0.00 46.46 4.94
2410 3087 1.259544 CGAACTTTGTTTCGCCGTGC 61.260 55.000 0.00 0.00 41.73 5.34
2411 3088 0.248296 GAACTTTGTTTCGCCGTGCA 60.248 50.000 0.00 0.00 0.00 4.57
2412 3089 0.171455 AACTTTGTTTCGCCGTGCAA 59.829 45.000 0.00 0.00 0.00 4.08
2413 3090 0.171455 ACTTTGTTTCGCCGTGCAAA 59.829 45.000 0.00 0.00 0.00 3.68
2414 3091 1.202359 ACTTTGTTTCGCCGTGCAAAT 60.202 42.857 0.00 0.00 31.60 2.32
2415 3092 2.033550 ACTTTGTTTCGCCGTGCAAATA 59.966 40.909 0.00 0.00 31.60 1.40
2416 3093 2.039327 TTGTTTCGCCGTGCAAATAC 57.961 45.000 0.00 0.00 0.00 1.89
2417 3094 0.110599 TGTTTCGCCGTGCAAATACG 60.111 50.000 0.00 0.00 43.35 3.06
2423 3100 3.573558 CGTGCAAATACGGTGCCT 58.426 55.556 0.00 0.00 41.49 4.75
2424 3101 1.423845 CGTGCAAATACGGTGCCTC 59.576 57.895 0.00 0.00 41.49 4.70
2425 3102 1.800681 GTGCAAATACGGTGCCTCC 59.199 57.895 0.00 0.00 41.49 4.30
2426 3103 0.676782 GTGCAAATACGGTGCCTCCT 60.677 55.000 0.00 0.00 41.49 3.69
2427 3104 0.037590 TGCAAATACGGTGCCTCCTT 59.962 50.000 0.00 0.00 41.49 3.36
2428 3105 0.733150 GCAAATACGGTGCCTCCTTC 59.267 55.000 0.00 0.00 35.91 3.46
2429 3106 1.679032 GCAAATACGGTGCCTCCTTCT 60.679 52.381 0.00 0.00 35.91 2.85
2430 3107 2.009774 CAAATACGGTGCCTCCTTCTG 58.990 52.381 0.00 0.00 0.00 3.02
2431 3108 1.276622 AATACGGTGCCTCCTTCTGT 58.723 50.000 0.00 0.00 0.00 3.41
2432 3109 2.154567 ATACGGTGCCTCCTTCTGTA 57.845 50.000 0.00 0.00 0.00 2.74
2433 3110 2.154567 TACGGTGCCTCCTTCTGTAT 57.845 50.000 0.00 0.00 0.00 2.29
2434 3111 0.537188 ACGGTGCCTCCTTCTGTATG 59.463 55.000 0.00 0.00 0.00 2.39
2435 3112 0.537188 CGGTGCCTCCTTCTGTATGT 59.463 55.000 0.00 0.00 0.00 2.29
2436 3113 1.740380 CGGTGCCTCCTTCTGTATGTG 60.740 57.143 0.00 0.00 0.00 3.21
2437 3114 1.407437 GGTGCCTCCTTCTGTATGTGG 60.407 57.143 0.00 0.00 0.00 4.17
2438 3115 0.911769 TGCCTCCTTCTGTATGTGGG 59.088 55.000 0.00 0.00 0.00 4.61
2439 3116 0.464554 GCCTCCTTCTGTATGTGGGC 60.465 60.000 0.00 0.00 0.00 5.36
2440 3117 0.911769 CCTCCTTCTGTATGTGGGCA 59.088 55.000 0.00 0.00 0.00 5.36
2441 3118 1.492176 CCTCCTTCTGTATGTGGGCAT 59.508 52.381 0.00 0.00 39.03 4.40
2442 3119 2.705658 CCTCCTTCTGTATGTGGGCATA 59.294 50.000 0.00 0.00 36.58 3.14
2456 3133 4.284123 CATACGCTATGCCCGCAT 57.716 55.556 7.43 7.43 40.19 4.73
2457 3134 1.789751 CATACGCTATGCCCGCATG 59.210 57.895 12.42 3.97 37.82 4.06
2458 3135 2.034879 ATACGCTATGCCCGCATGC 61.035 57.895 7.91 7.91 37.82 4.06
2462 3139 3.653009 CTATGCCCGCATGCCGTG 61.653 66.667 13.15 1.41 37.82 4.94
2463 3140 4.168291 TATGCCCGCATGCCGTGA 62.168 61.111 13.15 0.00 37.82 4.35
2471 3148 3.792047 CATGCCGTGACAGCGTGG 61.792 66.667 5.11 0.00 42.36 4.94
2472 3149 4.314440 ATGCCGTGACAGCGTGGT 62.314 61.111 0.00 0.00 0.00 4.16
2473 3150 2.938086 ATGCCGTGACAGCGTGGTA 61.938 57.895 0.00 0.00 0.00 3.25
2474 3151 2.809601 GCCGTGACAGCGTGGTAG 60.810 66.667 0.00 0.00 0.00 3.18
2475 3152 2.649034 CCGTGACAGCGTGGTAGT 59.351 61.111 0.00 0.00 0.00 2.73
2476 3153 1.733041 CCGTGACAGCGTGGTAGTG 60.733 63.158 0.00 0.00 0.00 2.74
2477 3154 1.733041 CGTGACAGCGTGGTAGTGG 60.733 63.158 0.00 0.00 0.00 4.00
2478 3155 2.027625 GTGACAGCGTGGTAGTGGC 61.028 63.158 0.00 0.00 0.00 5.01
2479 3156 2.434359 GACAGCGTGGTAGTGGCC 60.434 66.667 0.00 0.00 0.00 5.36
2480 3157 3.952628 GACAGCGTGGTAGTGGCCC 62.953 68.421 0.00 0.00 0.00 5.80
2481 3158 4.015406 CAGCGTGGTAGTGGCCCA 62.015 66.667 0.00 0.00 0.00 5.36
2485 3162 2.358247 GTGGTAGTGGCCCACGTG 60.358 66.667 9.08 9.08 42.69 4.49
2486 3163 2.845317 TGGTAGTGGCCCACGTGT 60.845 61.111 15.65 0.00 39.64 4.49
2487 3164 1.533513 TGGTAGTGGCCCACGTGTA 60.534 57.895 15.65 0.00 39.64 2.90
2488 3165 1.120184 TGGTAGTGGCCCACGTGTAA 61.120 55.000 15.65 0.00 39.64 2.41
2489 3166 0.390735 GGTAGTGGCCCACGTGTAAG 60.391 60.000 15.65 3.89 39.64 2.34
2490 3167 0.319405 GTAGTGGCCCACGTGTAAGT 59.681 55.000 15.65 2.47 39.64 2.24
2491 3168 0.319083 TAGTGGCCCACGTGTAAGTG 59.681 55.000 15.65 0.00 39.64 3.16
2498 3175 3.886044 CACGTGTAAGTGGCTGAGA 57.114 52.632 7.58 0.00 38.40 3.27
2499 3176 1.702886 CACGTGTAAGTGGCTGAGAG 58.297 55.000 7.58 0.00 38.40 3.20
2500 3177 0.038159 ACGTGTAAGTGGCTGAGAGC 60.038 55.000 0.00 0.00 41.46 4.09
2501 3178 0.038251 CGTGTAAGTGGCTGAGAGCA 60.038 55.000 0.00 0.00 44.75 4.26
2502 3179 1.605457 CGTGTAAGTGGCTGAGAGCAA 60.605 52.381 0.00 0.00 44.75 3.91
2503 3180 2.072298 GTGTAAGTGGCTGAGAGCAAG 58.928 52.381 0.00 0.00 44.75 4.01
2504 3181 1.970640 TGTAAGTGGCTGAGAGCAAGA 59.029 47.619 0.00 0.00 44.75 3.02
2505 3182 2.028658 TGTAAGTGGCTGAGAGCAAGAG 60.029 50.000 0.00 0.00 44.75 2.85
2506 3183 1.346062 AAGTGGCTGAGAGCAAGAGA 58.654 50.000 0.00 0.00 44.75 3.10
2507 3184 0.896923 AGTGGCTGAGAGCAAGAGAG 59.103 55.000 0.00 0.00 44.75 3.20
2508 3185 0.108233 GTGGCTGAGAGCAAGAGAGG 60.108 60.000 0.00 0.00 44.75 3.69
2509 3186 0.251967 TGGCTGAGAGCAAGAGAGGA 60.252 55.000 0.00 0.00 44.75 3.71
2510 3187 0.461135 GGCTGAGAGCAAGAGAGGAG 59.539 60.000 0.00 0.00 44.75 3.69
2511 3188 0.179103 GCTGAGAGCAAGAGAGGAGC 60.179 60.000 0.00 0.00 41.89 4.70
2512 3189 1.477553 CTGAGAGCAAGAGAGGAGCT 58.522 55.000 0.00 0.00 42.17 4.09
2513 3190 1.135527 CTGAGAGCAAGAGAGGAGCTG 59.864 57.143 0.00 0.00 39.02 4.24
2514 3191 0.461135 GAGAGCAAGAGAGGAGCTGG 59.539 60.000 0.00 0.00 39.02 4.85
2515 3192 0.977108 AGAGCAAGAGAGGAGCTGGG 60.977 60.000 0.00 0.00 39.02 4.45
2516 3193 1.229464 AGCAAGAGAGGAGCTGGGT 60.229 57.895 0.00 0.00 37.20 4.51
2517 3194 0.041833 AGCAAGAGAGGAGCTGGGTA 59.958 55.000 0.00 0.00 37.20 3.69
2518 3195 0.463620 GCAAGAGAGGAGCTGGGTAG 59.536 60.000 0.00 0.00 0.00 3.18
2530 3207 2.264794 GGGTAGCCCGTGTGTGAG 59.735 66.667 0.00 0.00 32.13 3.51
2531 3208 2.264794 GGTAGCCCGTGTGTGAGG 59.735 66.667 0.00 0.00 0.00 3.86
2532 3209 2.280552 GGTAGCCCGTGTGTGAGGA 61.281 63.158 0.00 0.00 0.00 3.71
2533 3210 1.669440 GTAGCCCGTGTGTGAGGAA 59.331 57.895 0.00 0.00 0.00 3.36
2534 3211 0.249398 GTAGCCCGTGTGTGAGGAAT 59.751 55.000 0.00 0.00 0.00 3.01
2535 3212 0.535335 TAGCCCGTGTGTGAGGAATC 59.465 55.000 0.00 0.00 0.00 2.52
2536 3213 2.100631 GCCCGTGTGTGAGGAATCG 61.101 63.158 0.00 0.00 0.00 3.34
2537 3214 2.100631 CCCGTGTGTGAGGAATCGC 61.101 63.158 0.00 0.00 0.00 4.58
2538 3215 2.100631 CCGTGTGTGAGGAATCGCC 61.101 63.158 0.00 0.00 0.00 5.54
2558 3235 9.825972 AATCGCCTCATATTTTATTTAATCACG 57.174 29.630 0.00 0.00 0.00 4.35
2559 3236 8.373048 TCGCCTCATATTTTATTTAATCACGT 57.627 30.769 0.00 0.00 0.00 4.49
2560 3237 9.478768 TCGCCTCATATTTTATTTAATCACGTA 57.521 29.630 0.00 0.00 0.00 3.57
2561 3238 9.525007 CGCCTCATATTTTATTTAATCACGTAC 57.475 33.333 0.00 0.00 0.00 3.67
2562 3239 9.821662 GCCTCATATTTTATTTAATCACGTACC 57.178 33.333 0.00 0.00 0.00 3.34
2568 3245 6.913873 TTTATTTAATCACGTACCAGAGCC 57.086 37.500 0.00 0.00 0.00 4.70
2569 3246 3.965379 TTTAATCACGTACCAGAGCCA 57.035 42.857 0.00 0.00 0.00 4.75
2570 3247 3.965379 TTAATCACGTACCAGAGCCAA 57.035 42.857 0.00 0.00 0.00 4.52
2571 3248 2.094762 AATCACGTACCAGAGCCAAC 57.905 50.000 0.00 0.00 0.00 3.77
2572 3249 0.973632 ATCACGTACCAGAGCCAACA 59.026 50.000 0.00 0.00 0.00 3.33
2573 3250 0.317160 TCACGTACCAGAGCCAACAG 59.683 55.000 0.00 0.00 0.00 3.16
2574 3251 0.033504 CACGTACCAGAGCCAACAGT 59.966 55.000 0.00 0.00 0.00 3.55
2575 3252 1.271379 CACGTACCAGAGCCAACAGTA 59.729 52.381 0.00 0.00 0.00 2.74
2576 3253 1.965643 ACGTACCAGAGCCAACAGTAA 59.034 47.619 0.00 0.00 0.00 2.24
2577 3254 2.366266 ACGTACCAGAGCCAACAGTAAA 59.634 45.455 0.00 0.00 0.00 2.01
2578 3255 3.181463 ACGTACCAGAGCCAACAGTAAAA 60.181 43.478 0.00 0.00 0.00 1.52
2579 3256 3.810941 CGTACCAGAGCCAACAGTAAAAA 59.189 43.478 0.00 0.00 0.00 1.94
2580 3257 4.454504 CGTACCAGAGCCAACAGTAAAAAT 59.545 41.667 0.00 0.00 0.00 1.82
2581 3258 5.640357 CGTACCAGAGCCAACAGTAAAAATA 59.360 40.000 0.00 0.00 0.00 1.40
2582 3259 6.315393 CGTACCAGAGCCAACAGTAAAAATAT 59.685 38.462 0.00 0.00 0.00 1.28
2583 3260 7.493320 CGTACCAGAGCCAACAGTAAAAATATA 59.507 37.037 0.00 0.00 0.00 0.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.992715 CCAGATCTAGGTTTTCCATCGTAATT 59.007 38.462 0.00 0.00 43.73 1.40
1 2 6.099845 ACCAGATCTAGGTTTTCCATCGTAAT 59.900 38.462 10.11 0.00 43.73 1.89
2 3 5.424252 ACCAGATCTAGGTTTTCCATCGTAA 59.576 40.000 10.11 0.00 43.73 3.18
32 33 2.827051 CGCTGCCATCACCCGATTG 61.827 63.158 0.00 0.00 0.00 2.67
36 37 3.803082 CAACGCTGCCATCACCCG 61.803 66.667 0.00 0.00 0.00 5.28
74 75 0.749454 GCCATCAAGAGGGAATGCGT 60.749 55.000 4.73 0.00 33.27 5.24
209 217 1.806542 GCACGTCACATGTGAAGGATT 59.193 47.619 34.69 18.60 42.14 3.01
233 243 3.165685 GGCCGGTATGCCCCACTA 61.166 66.667 1.90 0.00 46.11 2.74
262 272 8.665685 GGAATAAAACTCTCTTTCTATCGCAAA 58.334 33.333 0.00 0.00 0.00 3.68
263 273 7.822334 TGGAATAAAACTCTCTTTCTATCGCAA 59.178 33.333 0.00 0.00 0.00 4.85
264 274 7.327975 TGGAATAAAACTCTCTTTCTATCGCA 58.672 34.615 0.00 0.00 0.00 5.10
265 275 7.772332 TGGAATAAAACTCTCTTTCTATCGC 57.228 36.000 0.00 0.00 0.00 4.58
270 280 9.692325 ATGCTTATGGAATAAAACTCTCTTTCT 57.308 29.630 0.00 0.00 38.53 2.52
273 283 9.566432 CCTATGCTTATGGAATAAAACTCTCTT 57.434 33.333 0.00 0.00 38.53 2.85
274 284 8.160106 CCCTATGCTTATGGAATAAAACTCTCT 58.840 37.037 0.00 0.00 38.53 3.10
275 285 7.939588 ACCCTATGCTTATGGAATAAAACTCTC 59.060 37.037 7.77 0.00 38.53 3.20
276 286 7.816411 ACCCTATGCTTATGGAATAAAACTCT 58.184 34.615 7.77 0.00 38.53 3.24
277 287 8.465273 AACCCTATGCTTATGGAATAAAACTC 57.535 34.615 7.77 0.00 38.53 3.01
278 288 9.350951 GTAACCCTATGCTTATGGAATAAAACT 57.649 33.333 7.77 0.00 38.53 2.66
279 289 8.287503 CGTAACCCTATGCTTATGGAATAAAAC 58.712 37.037 7.77 0.00 38.53 2.43
280 290 8.212312 TCGTAACCCTATGCTTATGGAATAAAA 58.788 33.333 7.77 0.00 38.53 1.52
281 291 7.737869 TCGTAACCCTATGCTTATGGAATAAA 58.262 34.615 7.77 0.00 38.53 1.40
282 292 7.305813 TCGTAACCCTATGCTTATGGAATAA 57.694 36.000 7.77 0.00 36.20 1.40
283 293 6.921486 TCGTAACCCTATGCTTATGGAATA 57.079 37.500 7.77 0.00 0.00 1.75
284 294 5.818678 TCGTAACCCTATGCTTATGGAAT 57.181 39.130 7.77 0.41 0.00 3.01
285 295 5.305902 TGATCGTAACCCTATGCTTATGGAA 59.694 40.000 7.77 0.00 0.00 3.53
286 296 4.836175 TGATCGTAACCCTATGCTTATGGA 59.164 41.667 7.77 0.00 0.00 3.41
287 297 5.147330 TGATCGTAACCCTATGCTTATGG 57.853 43.478 0.14 0.14 0.00 2.74
288 298 6.455647 TCTTGATCGTAACCCTATGCTTATG 58.544 40.000 0.00 0.00 0.00 1.90
289 299 6.295349 CCTCTTGATCGTAACCCTATGCTTAT 60.295 42.308 0.00 0.00 0.00 1.73
290 300 5.010719 CCTCTTGATCGTAACCCTATGCTTA 59.989 44.000 0.00 0.00 0.00 3.09
291 301 4.202264 CCTCTTGATCGTAACCCTATGCTT 60.202 45.833 0.00 0.00 0.00 3.91
292 302 3.322254 CCTCTTGATCGTAACCCTATGCT 59.678 47.826 0.00 0.00 0.00 3.79
293 303 3.654414 CCTCTTGATCGTAACCCTATGC 58.346 50.000 0.00 0.00 0.00 3.14
294 304 3.069586 TGCCTCTTGATCGTAACCCTATG 59.930 47.826 0.00 0.00 0.00 2.23
295 305 3.069729 GTGCCTCTTGATCGTAACCCTAT 59.930 47.826 0.00 0.00 0.00 2.57
296 306 2.429610 GTGCCTCTTGATCGTAACCCTA 59.570 50.000 0.00 0.00 0.00 3.53
297 307 1.207329 GTGCCTCTTGATCGTAACCCT 59.793 52.381 0.00 0.00 0.00 4.34
298 308 1.653151 GTGCCTCTTGATCGTAACCC 58.347 55.000 0.00 0.00 0.00 4.11
299 309 1.066430 TGGTGCCTCTTGATCGTAACC 60.066 52.381 0.00 0.00 0.00 2.85
300 310 2.380084 TGGTGCCTCTTGATCGTAAC 57.620 50.000 0.00 0.00 0.00 2.50
301 311 3.410631 TTTGGTGCCTCTTGATCGTAA 57.589 42.857 0.00 0.00 0.00 3.18
302 312 3.197766 AGATTTGGTGCCTCTTGATCGTA 59.802 43.478 0.00 0.00 0.00 3.43
303 313 2.026822 AGATTTGGTGCCTCTTGATCGT 60.027 45.455 0.00 0.00 0.00 3.73
304 314 2.636830 AGATTTGGTGCCTCTTGATCG 58.363 47.619 0.00 0.00 0.00 3.69
305 315 4.012374 TGAAGATTTGGTGCCTCTTGATC 58.988 43.478 0.00 0.00 29.64 2.92
306 316 4.038271 TGAAGATTTGGTGCCTCTTGAT 57.962 40.909 0.00 0.00 29.64 2.57
307 317 3.507162 TGAAGATTTGGTGCCTCTTGA 57.493 42.857 0.00 0.00 29.64 3.02
308 318 4.796038 ATTGAAGATTTGGTGCCTCTTG 57.204 40.909 0.00 0.00 29.64 3.02
309 319 5.324409 TGTATTGAAGATTTGGTGCCTCTT 58.676 37.500 0.00 0.00 32.09 2.85
310 320 4.922206 TGTATTGAAGATTTGGTGCCTCT 58.078 39.130 0.00 0.00 0.00 3.69
311 321 5.393461 CCTTGTATTGAAGATTTGGTGCCTC 60.393 44.000 0.00 0.00 0.00 4.70
312 322 4.463891 CCTTGTATTGAAGATTTGGTGCCT 59.536 41.667 0.00 0.00 0.00 4.75
313 323 4.462483 TCCTTGTATTGAAGATTTGGTGCC 59.538 41.667 0.00 0.00 0.00 5.01
314 324 5.393461 CCTCCTTGTATTGAAGATTTGGTGC 60.393 44.000 0.00 0.00 0.00 5.01
315 325 5.126061 CCCTCCTTGTATTGAAGATTTGGTG 59.874 44.000 0.00 0.00 0.00 4.17
316 326 5.264395 CCCTCCTTGTATTGAAGATTTGGT 58.736 41.667 0.00 0.00 0.00 3.67
317 327 4.098501 GCCCTCCTTGTATTGAAGATTTGG 59.901 45.833 0.00 0.00 0.00 3.28
318 328 4.706476 TGCCCTCCTTGTATTGAAGATTTG 59.294 41.667 0.00 0.00 0.00 2.32
319 329 4.934356 TGCCCTCCTTGTATTGAAGATTT 58.066 39.130 0.00 0.00 0.00 2.17
320 330 4.591321 TGCCCTCCTTGTATTGAAGATT 57.409 40.909 0.00 0.00 0.00 2.40
321 331 4.414846 AGATGCCCTCCTTGTATTGAAGAT 59.585 41.667 0.00 0.00 0.00 2.40
322 332 3.782523 AGATGCCCTCCTTGTATTGAAGA 59.217 43.478 0.00 0.00 0.00 2.87
323 333 4.133078 GAGATGCCCTCCTTGTATTGAAG 58.867 47.826 0.00 0.00 35.87 3.02
324 334 4.156455 GAGATGCCCTCCTTGTATTGAA 57.844 45.455 0.00 0.00 35.87 2.69
325 335 3.845781 GAGATGCCCTCCTTGTATTGA 57.154 47.619 0.00 0.00 35.87 2.57
338 348 1.149401 GGTTGGCTAGGGAGATGCC 59.851 63.158 0.00 0.00 46.26 4.40
339 349 0.179034 CAGGTTGGCTAGGGAGATGC 60.179 60.000 0.00 0.00 0.00 3.91
340 350 1.500474 TCAGGTTGGCTAGGGAGATG 58.500 55.000 0.00 0.00 0.00 2.90
341 351 2.503869 ATCAGGTTGGCTAGGGAGAT 57.496 50.000 0.00 0.00 0.00 2.75
342 352 2.426414 CCTATCAGGTTGGCTAGGGAGA 60.426 54.545 0.00 0.00 0.00 3.71
343 353 1.974236 CCTATCAGGTTGGCTAGGGAG 59.026 57.143 0.00 0.00 0.00 4.30
344 354 1.578703 TCCTATCAGGTTGGCTAGGGA 59.421 52.381 0.00 0.00 36.53 4.20
345 355 2.103153 TCCTATCAGGTTGGCTAGGG 57.897 55.000 0.00 0.00 36.53 3.53
346 356 3.242867 TCATCCTATCAGGTTGGCTAGG 58.757 50.000 3.97 0.00 36.09 3.02
347 357 4.963318 TTCATCCTATCAGGTTGGCTAG 57.037 45.455 3.97 0.00 36.09 3.42
348 358 5.191722 AGTTTTCATCCTATCAGGTTGGCTA 59.808 40.000 3.97 0.00 36.09 3.93
358 368 7.171508 TCGAACATATGCAGTTTTCATCCTATC 59.828 37.037 1.58 0.00 0.00 2.08
361 371 5.185454 TCGAACATATGCAGTTTTCATCCT 58.815 37.500 1.58 0.00 0.00 3.24
415 426 0.105224 ATTGTCCACGAACCACGACA 59.895 50.000 0.00 0.00 45.77 4.35
437 448 2.558359 GCATTAGTTTGGGCTTGTCACT 59.442 45.455 0.00 0.00 0.00 3.41
515 526 4.851179 GGGGGCGCTCGGTTTAGG 62.851 72.222 7.64 0.00 0.00 2.69
516 530 2.814913 AAAGGGGGCGCTCGGTTTAG 62.815 60.000 7.64 0.00 0.00 1.85
528 542 4.420206 AGAAGAAGAATGGAAAAAGGGGG 58.580 43.478 0.00 0.00 0.00 5.40
532 546 7.173907 TGTGCTAGAGAAGAAGAATGGAAAAAG 59.826 37.037 0.00 0.00 0.00 2.27
568 583 1.133976 ACCTCAAAGAAGCAGTGCACT 60.134 47.619 15.25 15.25 0.00 4.40
574 589 7.672983 TTACAAGAATACCTCAAAGAAGCAG 57.327 36.000 0.00 0.00 0.00 4.24
589 605 9.675464 TTGATTAGAAACGGGTATTACAAGAAT 57.325 29.630 0.00 0.00 0.00 2.40
593 609 7.293402 CGTTGATTAGAAACGGGTATTACAA 57.707 36.000 0.93 0.00 45.05 2.41
753 861 3.108343 CGAGGACGTACGCTGGAT 58.892 61.111 16.72 0.00 34.56 3.41
813 925 1.227350 CCGCTCGATGATGCTTGGA 60.227 57.895 0.00 0.00 0.00 3.53
864 976 2.514824 GGTTGGCGGAGAGGATGC 60.515 66.667 0.00 0.00 0.00 3.91
888 1001 1.690985 GGGGAGGAGGAAGGAGGTG 60.691 68.421 0.00 0.00 0.00 4.00
889 1002 2.788589 GGGGAGGAGGAAGGAGGT 59.211 66.667 0.00 0.00 0.00 3.85
890 1003 2.444895 CGGGGAGGAGGAAGGAGG 60.445 72.222 0.00 0.00 0.00 4.30
891 1004 3.157949 GCGGGGAGGAGGAAGGAG 61.158 72.222 0.00 0.00 0.00 3.69
892 1005 3.680920 GAGCGGGGAGGAGGAAGGA 62.681 68.421 0.00 0.00 0.00 3.36
893 1006 3.157949 GAGCGGGGAGGAGGAAGG 61.158 72.222 0.00 0.00 0.00 3.46
894 1007 3.157949 GGAGCGGGGAGGAGGAAG 61.158 72.222 0.00 0.00 0.00 3.46
895 1008 4.798682 GGGAGCGGGGAGGAGGAA 62.799 72.222 0.00 0.00 0.00 3.36
938 1066 0.252197 TGCTGATGCTGAGTGCTGAT 59.748 50.000 0.00 0.00 43.37 2.90
941 1069 0.391395 GAGTGCTGATGCTGAGTGCT 60.391 55.000 0.00 0.00 43.37 4.40
946 1074 0.391263 CTGCTGAGTGCTGATGCTGA 60.391 55.000 0.00 0.00 42.27 4.26
948 1076 1.745864 GCTGCTGAGTGCTGATGCT 60.746 57.895 0.00 0.00 42.27 3.79
952 1080 4.025858 GGGGCTGCTGAGTGCTGA 62.026 66.667 0.00 0.00 42.27 4.26
981 1118 2.356667 GGGAGGTTGAGCTTGGGG 59.643 66.667 0.00 0.00 0.00 4.96
987 1126 2.358737 CGTGTGGGGAGGTTGAGC 60.359 66.667 0.00 0.00 0.00 4.26
1464 1614 0.752009 AGCGACGAGGATCAAGCCTA 60.752 55.000 0.00 0.00 38.73 3.93
1490 1641 2.415625 GCCGACTAGGTACACACAGAAG 60.416 54.545 0.00 0.00 43.70 2.85
1503 1670 5.183014 TGTAACATCATACTGCCGACTAG 57.817 43.478 0.00 0.00 0.00 2.57
1508 1675 5.991328 AAGATTGTAACATCATACTGCCG 57.009 39.130 0.00 0.00 0.00 5.69
1578 1745 5.237996 ACATGAACACTGATTCAGACAACAG 59.762 40.000 20.33 6.85 41.76 3.16
1585 1752 3.501062 AGCACACATGAACACTGATTCAG 59.499 43.478 12.17 12.17 41.76 3.02
1593 1763 0.029300 ACGCAAGCACACATGAACAC 59.971 50.000 0.00 0.00 45.62 3.32
1618 1788 5.580297 GGCATTTAGAAGAGTCTGAACTGAG 59.420 44.000 0.00 0.00 35.28 3.35
1671 1884 6.730960 AATGGCAGCAAATTAAAATGAGTG 57.269 33.333 0.00 0.00 0.00 3.51
1672 1885 7.748691 AAAATGGCAGCAAATTAAAATGAGT 57.251 28.000 0.00 0.00 0.00 3.41
1766 2296 6.948353 TGCATTCTAAATTTATGAGCGAGTC 58.052 36.000 0.00 0.00 0.00 3.36
1880 2433 4.563580 GGCTGTCATGTTCCTTGACTCTAA 60.564 45.833 10.41 0.00 43.12 2.10
1881 2434 3.055819 GGCTGTCATGTTCCTTGACTCTA 60.056 47.826 10.41 0.00 43.12 2.43
1896 2451 0.038599 ATGGTTGCATCTGGCTGTCA 59.961 50.000 0.00 0.00 45.15 3.58
1897 2452 0.737219 GATGGTTGCATCTGGCTGTC 59.263 55.000 0.00 0.00 45.15 3.51
1898 2453 0.038599 TGATGGTTGCATCTGGCTGT 59.961 50.000 0.00 0.00 45.15 4.40
1899 2454 1.337071 GATGATGGTTGCATCTGGCTG 59.663 52.381 0.00 0.00 45.15 4.85
1947 2542 9.705103 ACCTGGTGTAGTATAAACATAGTAGAA 57.295 33.333 0.00 0.00 27.34 2.10
1998 2626 5.502544 GCTTCGTGATCACAAATTACCTAGC 60.503 44.000 24.93 12.52 0.00 3.42
2139 2806 1.202099 TCCCGTACCCAAAGATGGCA 61.202 55.000 0.00 0.00 46.09 4.92
2191 2858 4.441415 CACGTGAGACAACTCTTACAAGAC 59.559 45.833 10.90 0.00 42.99 3.01
2208 2875 9.394477 CGATACTATTTCTTCATATTCACGTGA 57.606 33.333 15.76 15.76 0.00 4.35
2210 2877 8.082852 AGCGATACTATTTCTTCATATTCACGT 58.917 33.333 0.00 0.00 0.00 4.49
2216 2883 6.312426 GCAGCAGCGATACTATTTCTTCATAT 59.688 38.462 0.00 0.00 0.00 1.78
2218 2885 4.450419 GCAGCAGCGATACTATTTCTTCAT 59.550 41.667 0.00 0.00 0.00 2.57
2235 2902 7.062605 CACCTTGAACATTAATTTAAGCAGCAG 59.937 37.037 0.00 0.00 0.00 4.24
2305 2982 7.336396 AGACACCCCTAATGTATTTAACTCAC 58.664 38.462 0.00 0.00 0.00 3.51
2307 2984 7.562135 TGAGACACCCCTAATGTATTTAACTC 58.438 38.462 0.00 0.00 0.00 3.01
2308 2985 7.504926 TGAGACACCCCTAATGTATTTAACT 57.495 36.000 0.00 0.00 0.00 2.24
2309 2986 7.827729 AGTTGAGACACCCCTAATGTATTTAAC 59.172 37.037 0.00 0.00 0.00 2.01
2311 2988 7.504926 AGTTGAGACACCCCTAATGTATTTA 57.495 36.000 0.00 0.00 0.00 1.40
2312 2989 6.388619 AGTTGAGACACCCCTAATGTATTT 57.611 37.500 0.00 0.00 0.00 1.40
2313 2990 6.180472 CAAGTTGAGACACCCCTAATGTATT 58.820 40.000 0.00 0.00 0.00 1.89
2314 2991 5.250774 ACAAGTTGAGACACCCCTAATGTAT 59.749 40.000 10.54 0.00 0.00 2.29
2315 2992 4.595781 ACAAGTTGAGACACCCCTAATGTA 59.404 41.667 10.54 0.00 0.00 2.29
2316 2993 3.394606 ACAAGTTGAGACACCCCTAATGT 59.605 43.478 10.54 0.00 0.00 2.71
2317 2994 4.021102 ACAAGTTGAGACACCCCTAATG 57.979 45.455 10.54 0.00 0.00 1.90
2318 2995 4.652822 GAACAAGTTGAGACACCCCTAAT 58.347 43.478 10.54 0.00 0.00 1.73
2319 2996 3.493699 CGAACAAGTTGAGACACCCCTAA 60.494 47.826 10.54 0.00 0.00 2.69
2320 2997 2.036733 CGAACAAGTTGAGACACCCCTA 59.963 50.000 10.54 0.00 0.00 3.53
2321 2998 1.202651 CGAACAAGTTGAGACACCCCT 60.203 52.381 10.54 0.00 0.00 4.79
2322 2999 1.226746 CGAACAAGTTGAGACACCCC 58.773 55.000 10.54 0.00 0.00 4.95
2323 3000 1.226746 CCGAACAAGTTGAGACACCC 58.773 55.000 10.54 0.00 0.00 4.61
2324 3001 1.949465 ACCGAACAAGTTGAGACACC 58.051 50.000 10.54 0.00 0.00 4.16
2325 3002 3.450578 TGTACCGAACAAGTTGAGACAC 58.549 45.455 10.54 0.58 34.29 3.67
2326 3003 3.382227 TCTGTACCGAACAAGTTGAGACA 59.618 43.478 10.54 3.49 37.74 3.41
2327 3004 3.734735 GTCTGTACCGAACAAGTTGAGAC 59.265 47.826 10.54 5.65 37.74 3.36
2328 3005 3.382227 TGTCTGTACCGAACAAGTTGAGA 59.618 43.478 10.54 0.00 37.74 3.27
2329 3006 3.713288 TGTCTGTACCGAACAAGTTGAG 58.287 45.455 10.54 0.42 37.74 3.02
2330 3007 3.804786 TGTCTGTACCGAACAAGTTGA 57.195 42.857 10.54 0.00 37.74 3.18
2331 3008 5.418310 AATTGTCTGTACCGAACAAGTTG 57.582 39.130 0.00 0.00 37.74 3.16
2332 3009 5.220970 CCAAATTGTCTGTACCGAACAAGTT 60.221 40.000 10.23 10.23 37.74 2.66
2333 3010 4.274950 CCAAATTGTCTGTACCGAACAAGT 59.725 41.667 9.67 5.49 37.74 3.16
2334 3011 4.274950 ACCAAATTGTCTGTACCGAACAAG 59.725 41.667 9.67 1.53 37.74 3.16
2335 3012 4.035792 CACCAAATTGTCTGTACCGAACAA 59.964 41.667 7.11 7.11 37.74 2.83
2336 3013 3.562141 CACCAAATTGTCTGTACCGAACA 59.438 43.478 0.00 0.00 36.42 3.18
2337 3014 3.562557 ACACCAAATTGTCTGTACCGAAC 59.437 43.478 0.00 0.00 0.00 3.95
2338 3015 3.810941 GACACCAAATTGTCTGTACCGAA 59.189 43.478 0.00 0.00 42.36 4.30
2339 3016 3.395639 GACACCAAATTGTCTGTACCGA 58.604 45.455 0.00 0.00 42.36 4.69
2340 3017 3.806316 GACACCAAATTGTCTGTACCG 57.194 47.619 0.00 0.00 42.36 4.02
2367 3044 9.438228 TCGAGTACCAATTTCATGTATTTTACA 57.562 29.630 0.00 0.00 43.80 2.41
2370 3047 9.010029 AGTTCGAGTACCAATTTCATGTATTTT 57.990 29.630 0.00 0.00 0.00 1.82
2371 3048 8.561738 AGTTCGAGTACCAATTTCATGTATTT 57.438 30.769 0.00 0.00 0.00 1.40
2372 3049 8.561738 AAGTTCGAGTACCAATTTCATGTATT 57.438 30.769 0.00 0.00 0.00 1.89
2373 3050 8.450964 CAAAGTTCGAGTACCAATTTCATGTAT 58.549 33.333 0.00 0.00 0.00 2.29
2374 3051 7.442969 ACAAAGTTCGAGTACCAATTTCATGTA 59.557 33.333 0.00 0.00 0.00 2.29
2375 3052 6.262273 ACAAAGTTCGAGTACCAATTTCATGT 59.738 34.615 0.00 0.00 0.00 3.21
2376 3053 6.668323 ACAAAGTTCGAGTACCAATTTCATG 58.332 36.000 0.00 0.00 0.00 3.07
2377 3054 6.877611 ACAAAGTTCGAGTACCAATTTCAT 57.122 33.333 0.00 0.00 0.00 2.57
2378 3055 6.687081 AACAAAGTTCGAGTACCAATTTCA 57.313 33.333 0.00 0.00 0.00 2.69
2379 3056 7.604714 GAAACAAAGTTCGAGTACCAATTTC 57.395 36.000 0.00 0.00 0.00 2.17
2392 3069 0.248296 TGCACGGCGAAACAAAGTTC 60.248 50.000 16.62 0.00 0.00 3.01
2393 3070 0.171455 TTGCACGGCGAAACAAAGTT 59.829 45.000 16.62 0.00 0.00 2.66
2394 3071 0.171455 TTTGCACGGCGAAACAAAGT 59.829 45.000 16.62 0.00 0.00 2.66
2395 3072 1.486439 ATTTGCACGGCGAAACAAAG 58.514 45.000 16.62 0.00 35.42 2.77
2396 3073 2.386249 GTATTTGCACGGCGAAACAAA 58.614 42.857 16.62 19.92 35.42 2.83
2397 3074 1.660614 CGTATTTGCACGGCGAAACAA 60.661 47.619 16.62 11.94 35.42 2.83
2398 3075 0.110599 CGTATTTGCACGGCGAAACA 60.111 50.000 16.62 5.41 35.42 2.83
2399 3076 2.620863 CGTATTTGCACGGCGAAAC 58.379 52.632 16.62 2.26 35.42 2.78
2406 3083 1.423845 GAGGCACCGTATTTGCACG 59.576 57.895 0.00 0.00 42.12 5.34
2407 3084 0.676782 AGGAGGCACCGTATTTGCAC 60.677 55.000 0.00 0.00 42.12 4.57
2408 3085 0.037590 AAGGAGGCACCGTATTTGCA 59.962 50.000 0.00 0.00 42.12 4.08
2409 3086 0.733150 GAAGGAGGCACCGTATTTGC 59.267 55.000 0.00 0.00 44.74 3.68
2410 3087 2.009774 CAGAAGGAGGCACCGTATTTG 58.990 52.381 0.00 0.00 44.74 2.32
2411 3088 1.628846 ACAGAAGGAGGCACCGTATTT 59.371 47.619 0.00 0.00 44.74 1.40
2412 3089 1.276622 ACAGAAGGAGGCACCGTATT 58.723 50.000 0.00 0.00 44.74 1.89
2413 3090 2.154567 TACAGAAGGAGGCACCGTAT 57.845 50.000 0.00 0.00 44.74 3.06
2414 3091 1.754803 CATACAGAAGGAGGCACCGTA 59.245 52.381 0.00 0.00 44.74 4.02
2415 3092 0.537188 CATACAGAAGGAGGCACCGT 59.463 55.000 0.00 0.00 44.74 4.83
2416 3093 0.537188 ACATACAGAAGGAGGCACCG 59.463 55.000 0.00 0.00 44.74 4.94
2417 3094 1.407437 CCACATACAGAAGGAGGCACC 60.407 57.143 0.00 0.00 39.35 5.01
2418 3095 1.407437 CCCACATACAGAAGGAGGCAC 60.407 57.143 0.00 0.00 0.00 5.01
2419 3096 0.911769 CCCACATACAGAAGGAGGCA 59.088 55.000 0.00 0.00 0.00 4.75
2420 3097 0.464554 GCCCACATACAGAAGGAGGC 60.465 60.000 0.00 0.00 0.00 4.70
2421 3098 0.911769 TGCCCACATACAGAAGGAGG 59.088 55.000 0.00 0.00 0.00 4.30
2439 3116 1.789751 CATGCGGGCATAGCGTATG 59.210 57.895 5.74 0.00 39.18 2.39
2440 3117 2.034879 GCATGCGGGCATAGCGTAT 61.035 57.895 0.00 0.00 37.44 3.06
2441 3118 2.664851 GCATGCGGGCATAGCGTA 60.665 61.111 0.00 0.00 37.44 4.42
2445 3122 3.653009 CACGGCATGCGGGCATAG 61.653 66.667 26.58 9.24 43.60 2.23
2446 3123 4.168291 TCACGGCATGCGGGCATA 62.168 61.111 26.58 8.30 43.60 3.14
2453 3130 4.450122 CACGCTGTCACGGCATGC 62.450 66.667 9.90 9.90 35.10 4.06
2454 3131 3.792047 CCACGCTGTCACGGCATG 61.792 66.667 9.87 2.89 35.10 4.06
2455 3132 2.835701 CTACCACGCTGTCACGGCAT 62.836 60.000 9.87 0.00 35.10 4.40
2456 3133 3.567478 CTACCACGCTGTCACGGCA 62.567 63.158 9.87 0.00 35.10 5.69
2457 3134 2.809601 CTACCACGCTGTCACGGC 60.810 66.667 0.00 0.00 37.37 5.68
2458 3135 1.733041 CACTACCACGCTGTCACGG 60.733 63.158 0.00 0.00 37.37 4.94
2459 3136 1.733041 CCACTACCACGCTGTCACG 60.733 63.158 0.00 0.00 39.50 4.35
2460 3137 2.027625 GCCACTACCACGCTGTCAC 61.028 63.158 0.00 0.00 0.00 3.67
2461 3138 2.342279 GCCACTACCACGCTGTCA 59.658 61.111 0.00 0.00 0.00 3.58
2462 3139 2.434359 GGCCACTACCACGCTGTC 60.434 66.667 0.00 0.00 0.00 3.51
2463 3140 4.016706 GGGCCACTACCACGCTGT 62.017 66.667 4.39 0.00 0.00 4.40
2464 3141 4.015406 TGGGCCACTACCACGCTG 62.015 66.667 0.00 0.00 31.83 5.18
2469 3146 1.120184 TTACACGTGGGCCACTACCA 61.120 55.000 32.28 13.71 35.14 3.25
2470 3147 0.390735 CTTACACGTGGGCCACTACC 60.391 60.000 32.28 8.51 31.34 3.18
2471 3148 0.319405 ACTTACACGTGGGCCACTAC 59.681 55.000 32.28 8.91 31.34 2.73
2472 3149 0.319083 CACTTACACGTGGGCCACTA 59.681 55.000 32.28 16.79 31.34 2.74
2473 3150 1.070786 CACTTACACGTGGGCCACT 59.929 57.895 32.28 17.86 31.34 4.00
2474 3151 3.650369 CACTTACACGTGGGCCAC 58.350 61.111 26.95 26.95 0.00 5.01
2480 3157 1.702886 CTCTCAGCCACTTACACGTG 58.297 55.000 15.48 15.48 34.71 4.49
2481 3158 0.038159 GCTCTCAGCCACTTACACGT 60.038 55.000 0.00 0.00 34.48 4.49
2482 3159 0.038251 TGCTCTCAGCCACTTACACG 60.038 55.000 0.00 0.00 41.51 4.49
2483 3160 2.072298 CTTGCTCTCAGCCACTTACAC 58.928 52.381 0.00 0.00 41.51 2.90
2484 3161 1.970640 TCTTGCTCTCAGCCACTTACA 59.029 47.619 0.00 0.00 41.51 2.41
2485 3162 2.232452 TCTCTTGCTCTCAGCCACTTAC 59.768 50.000 0.00 0.00 41.51 2.34
2486 3163 2.495270 CTCTCTTGCTCTCAGCCACTTA 59.505 50.000 0.00 0.00 41.51 2.24
2487 3164 1.275856 CTCTCTTGCTCTCAGCCACTT 59.724 52.381 0.00 0.00 41.51 3.16
2488 3165 0.896923 CTCTCTTGCTCTCAGCCACT 59.103 55.000 0.00 0.00 41.51 4.00
2489 3166 0.108233 CCTCTCTTGCTCTCAGCCAC 60.108 60.000 0.00 0.00 41.51 5.01
2490 3167 0.251967 TCCTCTCTTGCTCTCAGCCA 60.252 55.000 0.00 0.00 41.51 4.75
2491 3168 0.461135 CTCCTCTCTTGCTCTCAGCC 59.539 60.000 0.00 0.00 41.51 4.85
2492 3169 0.179103 GCTCCTCTCTTGCTCTCAGC 60.179 60.000 0.00 0.00 42.82 4.26
2493 3170 1.135527 CAGCTCCTCTCTTGCTCTCAG 59.864 57.143 0.00 0.00 34.51 3.35
2494 3171 1.184431 CAGCTCCTCTCTTGCTCTCA 58.816 55.000 0.00 0.00 34.51 3.27
2495 3172 0.461135 CCAGCTCCTCTCTTGCTCTC 59.539 60.000 0.00 0.00 34.51 3.20
2496 3173 0.977108 CCCAGCTCCTCTCTTGCTCT 60.977 60.000 0.00 0.00 34.51 4.09
2497 3174 1.264045 ACCCAGCTCCTCTCTTGCTC 61.264 60.000 0.00 0.00 34.51 4.26
2498 3175 0.041833 TACCCAGCTCCTCTCTTGCT 59.958 55.000 0.00 0.00 37.56 3.91
2499 3176 0.463620 CTACCCAGCTCCTCTCTTGC 59.536 60.000 0.00 0.00 0.00 4.01
2500 3177 0.463620 GCTACCCAGCTCCTCTCTTG 59.536 60.000 0.00 0.00 44.93 3.02
2501 3178 2.909140 GCTACCCAGCTCCTCTCTT 58.091 57.895 0.00 0.00 44.93 2.85
2502 3179 4.697102 GCTACCCAGCTCCTCTCT 57.303 61.111 0.00 0.00 44.93 3.10
2505 3182 3.541713 CGGGCTACCCAGCTCCTC 61.542 72.222 3.08 0.00 46.42 3.71
2506 3183 4.400251 ACGGGCTACCCAGCTCCT 62.400 66.667 3.08 0.00 46.42 3.69
2507 3184 4.162690 CACGGGCTACCCAGCTCC 62.163 72.222 3.08 0.00 46.42 4.70
2508 3185 3.391382 ACACGGGCTACCCAGCTC 61.391 66.667 3.08 0.00 45.83 4.09
2509 3186 3.706373 CACACGGGCTACCCAGCT 61.706 66.667 3.08 0.00 45.83 4.24
2510 3187 4.016706 ACACACGGGCTACCCAGC 62.017 66.667 3.08 0.00 45.83 4.85
2511 3188 2.047274 CACACACGGGCTACCCAG 60.047 66.667 3.08 0.00 45.83 4.45
2512 3189 2.524640 TCACACACGGGCTACCCA 60.525 61.111 3.08 0.00 45.83 4.51
2513 3190 2.264794 CTCACACACGGGCTACCC 59.735 66.667 0.00 0.00 41.09 3.69
2514 3191 1.823169 TTCCTCACACACGGGCTACC 61.823 60.000 0.00 0.00 0.00 3.18
2515 3192 0.249398 ATTCCTCACACACGGGCTAC 59.751 55.000 0.00 0.00 0.00 3.58
2516 3193 0.535335 GATTCCTCACACACGGGCTA 59.465 55.000 0.00 0.00 0.00 3.93
2517 3194 1.296715 GATTCCTCACACACGGGCT 59.703 57.895 0.00 0.00 0.00 5.19
2518 3195 2.100631 CGATTCCTCACACACGGGC 61.101 63.158 0.00 0.00 0.00 6.13
2519 3196 2.100631 GCGATTCCTCACACACGGG 61.101 63.158 0.00 0.00 0.00 5.28
2520 3197 2.100631 GGCGATTCCTCACACACGG 61.101 63.158 0.00 0.00 0.00 4.94
2521 3198 1.079819 AGGCGATTCCTCACACACG 60.080 57.895 0.00 0.00 43.20 4.49
2532 3209 9.825972 CGTGATTAAATAAAATATGAGGCGATT 57.174 29.630 0.00 0.00 0.00 3.34
2533 3210 8.999431 ACGTGATTAAATAAAATATGAGGCGAT 58.001 29.630 0.00 0.00 0.00 4.58
2534 3211 8.373048 ACGTGATTAAATAAAATATGAGGCGA 57.627 30.769 0.00 0.00 0.00 5.54
2535 3212 9.525007 GTACGTGATTAAATAAAATATGAGGCG 57.475 33.333 0.00 0.00 0.00 5.52
2536 3213 9.821662 GGTACGTGATTAAATAAAATATGAGGC 57.178 33.333 0.00 0.00 0.00 4.70
2542 3219 9.048446 GGCTCTGGTACGTGATTAAATAAAATA 57.952 33.333 0.00 0.00 0.00 1.40
2543 3220 7.554835 TGGCTCTGGTACGTGATTAAATAAAAT 59.445 33.333 0.00 0.00 0.00 1.82
2544 3221 6.879993 TGGCTCTGGTACGTGATTAAATAAAA 59.120 34.615 0.00 0.00 0.00 1.52
2545 3222 6.408035 TGGCTCTGGTACGTGATTAAATAAA 58.592 36.000 0.00 0.00 0.00 1.40
2546 3223 5.979993 TGGCTCTGGTACGTGATTAAATAA 58.020 37.500 0.00 0.00 0.00 1.40
2547 3224 5.601583 TGGCTCTGGTACGTGATTAAATA 57.398 39.130 0.00 0.00 0.00 1.40
2548 3225 4.481368 TGGCTCTGGTACGTGATTAAAT 57.519 40.909 0.00 0.00 0.00 1.40
2549 3226 3.965379 TGGCTCTGGTACGTGATTAAA 57.035 42.857 0.00 0.00 0.00 1.52
2550 3227 3.007074 TGTTGGCTCTGGTACGTGATTAA 59.993 43.478 0.00 0.00 0.00 1.40
2551 3228 2.563620 TGTTGGCTCTGGTACGTGATTA 59.436 45.455 0.00 0.00 0.00 1.75
2552 3229 1.346395 TGTTGGCTCTGGTACGTGATT 59.654 47.619 0.00 0.00 0.00 2.57
2553 3230 0.973632 TGTTGGCTCTGGTACGTGAT 59.026 50.000 0.00 0.00 0.00 3.06
2554 3231 0.317160 CTGTTGGCTCTGGTACGTGA 59.683 55.000 0.00 0.00 0.00 4.35
2555 3232 0.033504 ACTGTTGGCTCTGGTACGTG 59.966 55.000 0.00 0.00 0.00 4.49
2556 3233 1.624336 TACTGTTGGCTCTGGTACGT 58.376 50.000 0.00 0.00 0.00 3.57
2557 3234 2.736144 TTACTGTTGGCTCTGGTACG 57.264 50.000 0.00 0.00 0.00 3.67
2558 3235 5.959618 ATTTTTACTGTTGGCTCTGGTAC 57.040 39.130 0.00 0.00 0.00 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.