Multiple sequence alignment - TraesCS3A01G100800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G100800 chr3A 100.000 5874 0 0 1 5874 65437755 65431882 0.000000e+00 10848.0
1 TraesCS3A01G100800 chr3A 94.231 52 2 1 19 70 708172016 708171966 1.760000e-10 78.7
2 TraesCS3A01G100800 chr3D 90.861 4749 309 65 425 5127 54812985 54808316 0.000000e+00 6250.0
3 TraesCS3A01G100800 chr3D 80.949 1307 227 15 3435 4728 54649188 54647891 0.000000e+00 1014.0
4 TraesCS3A01G100800 chr3D 91.749 606 32 7 5131 5723 54808341 54807741 0.000000e+00 826.0
5 TraesCS3A01G100800 chr3D 77.658 1298 241 33 1026 2306 54807505 54806240 0.000000e+00 745.0
6 TraesCS3A01G100800 chr3D 80.278 720 129 8 1026 1737 54765235 54764521 1.120000e-146 531.0
7 TraesCS3A01G100800 chr3D 92.228 193 15 0 2088 2280 55078422 55078230 2.090000e-69 274.0
8 TraesCS3A01G100800 chr3D 82.407 324 37 10 70 379 54813754 54813437 1.260000e-66 265.0
9 TraesCS3A01G100800 chr3D 83.436 163 17 8 237 394 54980657 54980500 6.140000e-30 143.0
10 TraesCS3A01G100800 chr3B 84.398 2410 306 40 2675 5059 85085503 85083139 0.000000e+00 2303.0
11 TraesCS3A01G100800 chr3B 89.661 1683 153 9 745 2422 85087807 85086141 0.000000e+00 2124.0
12 TraesCS3A01G100800 chr3B 82.280 1614 233 29 3506 5105 85059117 85057543 0.000000e+00 1347.0
13 TraesCS3A01G100800 chr3B 81.184 1706 246 29 3436 5105 84883209 84881543 0.000000e+00 1303.0
14 TraesCS3A01G100800 chr3B 83.803 284 16 8 68 321 85088462 85088179 5.880000e-60 243.0
15 TraesCS3A01G100800 chr7D 94.340 53 1 2 19 70 613325668 613325617 4.880000e-11 80.5
16 TraesCS3A01G100800 chr7A 97.872 47 0 1 19 64 423539912 423539958 4.880000e-11 80.5
17 TraesCS3A01G100800 chr7A 94.231 52 2 1 19 69 672799910 672799961 1.760000e-10 78.7
18 TraesCS3A01G100800 chr6A 97.826 46 1 0 16 61 525741739 525741784 4.880000e-11 80.5
19 TraesCS3A01G100800 chr2A 96.000 50 0 2 19 67 27494891 27494843 4.880000e-11 80.5
20 TraesCS3A01G100800 chr2A 91.071 56 3 2 15 69 770812535 770812481 2.270000e-09 75.0
21 TraesCS3A01G100800 chr5A 94.231 52 2 1 19 69 51982818 51982869 1.760000e-10 78.7
22 TraesCS3A01G100800 chr5A 91.071 56 3 2 19 72 634037591 634037536 2.270000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G100800 chr3A 65431882 65437755 5873 True 10848.000000 10848 100.00000 1 5874 1 chr3A.!!$R1 5873
1 TraesCS3A01G100800 chr3D 54806240 54813754 7514 True 2021.500000 6250 85.66875 70 5723 4 chr3D.!!$R5 5653
2 TraesCS3A01G100800 chr3D 54647891 54649188 1297 True 1014.000000 1014 80.94900 3435 4728 1 chr3D.!!$R1 1293
3 TraesCS3A01G100800 chr3D 54764521 54765235 714 True 531.000000 531 80.27800 1026 1737 1 chr3D.!!$R2 711
4 TraesCS3A01G100800 chr3B 85083139 85088462 5323 True 1556.666667 2303 85.95400 68 5059 3 chr3B.!!$R3 4991
5 TraesCS3A01G100800 chr3B 85057543 85059117 1574 True 1347.000000 1347 82.28000 3506 5105 1 chr3B.!!$R2 1599
6 TraesCS3A01G100800 chr3B 84881543 84883209 1666 True 1303.000000 1303 81.18400 3436 5105 1 chr3B.!!$R1 1669

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
350 383 0.171903 GCTGCGTCCATCATTTGCTT 59.828 50.0 0.00 0.00 0.00 3.91 F
422 461 0.179215 GAACACTTCTTCGCCGCATG 60.179 55.0 0.00 0.00 0.00 4.06 F
696 1159 0.324614 ACAATGCATCTGGTCCGTGA 59.675 50.0 0.00 0.00 0.00 4.35 F
900 1369 0.387929 GACCATGCATGCATTCCCAG 59.612 55.0 30.32 18.05 33.90 4.45 F
1117 1586 0.458260 TGCTGCAGCCAAGCATAATG 59.542 50.0 34.64 0.00 44.68 1.90 F
2590 3419 0.251653 ACCTAGAGGAGCACAACGGA 60.252 55.0 1.60 0.00 38.94 4.69 F
2890 3779 0.323629 CCCCGTGGTCTTCAAGCTTA 59.676 55.0 0.00 0.00 0.00 3.09 F
4085 5001 0.461693 GCAGCAAACAAACCTGCCAA 60.462 50.0 0.62 0.00 44.60 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1167 1636 0.168348 CGACGTCGATGAAGGACTGT 59.832 55.000 33.35 0.0 43.02 3.55 R
1581 2050 0.539051 CTCCATCAAGGCGGAGTTCT 59.461 55.000 0.00 0.0 43.32 3.01 R
1750 2225 0.608130 GTGAGCCCCCAATTGTTTCC 59.392 55.000 4.43 0.0 0.00 3.13 R
2578 3407 1.803334 TGTATGTTCCGTTGTGCTCC 58.197 50.000 0.00 0.0 0.00 4.70 R
2911 3800 1.452110 TTGCACCCGTGAGATCATTG 58.548 50.000 0.00 0.0 0.00 2.82 R
4061 4977 1.000274 CAGGTTTGTTTGCTGCCCTAC 60.000 52.381 0.00 0.0 0.00 3.18 R
4661 5577 1.202818 GCTGACCCATCCTTCCATACC 60.203 57.143 0.00 0.0 0.00 2.73 R
5315 6248 0.323629 CGCCTTGGACAGGGAGTTAA 59.676 55.000 4.47 0.0 44.16 2.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 7.489574 TTTTGAATTGTTTGGATTGCTTACC 57.510 32.000 0.00 0.00 0.00 2.85
45 46 5.798125 TGAATTGTTTGGATTGCTTACCA 57.202 34.783 0.00 0.00 0.00 3.25
46 47 5.537188 TGAATTGTTTGGATTGCTTACCAC 58.463 37.500 0.00 0.00 35.81 4.16
47 48 5.069648 TGAATTGTTTGGATTGCTTACCACA 59.930 36.000 0.00 0.00 35.81 4.17
48 49 5.743636 ATTGTTTGGATTGCTTACCACAT 57.256 34.783 0.00 0.00 35.81 3.21
49 50 4.517952 TGTTTGGATTGCTTACCACATG 57.482 40.909 0.00 0.00 35.81 3.21
50 51 3.894427 TGTTTGGATTGCTTACCACATGT 59.106 39.130 0.00 0.00 35.81 3.21
51 52 4.343526 TGTTTGGATTGCTTACCACATGTT 59.656 37.500 0.00 0.00 35.81 2.71
52 53 5.163364 TGTTTGGATTGCTTACCACATGTTT 60.163 36.000 0.00 0.00 35.81 2.83
53 54 4.782019 TGGATTGCTTACCACATGTTTC 57.218 40.909 0.00 0.00 0.00 2.78
54 55 4.148079 TGGATTGCTTACCACATGTTTCA 58.852 39.130 0.00 0.00 0.00 2.69
55 56 4.771577 TGGATTGCTTACCACATGTTTCAT 59.228 37.500 0.00 0.00 0.00 2.57
56 57 5.104374 GGATTGCTTACCACATGTTTCATG 58.896 41.667 0.00 7.99 0.00 3.07
57 58 5.336690 GGATTGCTTACCACATGTTTCATGT 60.337 40.000 9.21 9.21 0.00 3.21
58 59 4.502171 TGCTTACCACATGTTTCATGTG 57.498 40.909 26.20 26.20 46.49 3.21
159 168 3.394674 TGCATACTTCCGACTTCACAA 57.605 42.857 0.00 0.00 0.00 3.33
212 245 0.604073 TACAAGGACATCGACGGCAA 59.396 50.000 0.00 0.00 0.00 4.52
221 254 0.595053 ATCGACGGCAATGCGAGTAG 60.595 55.000 0.00 2.78 37.48 2.57
251 284 1.520666 CCGAGCCGGTCCAATTACT 59.479 57.895 1.90 0.00 42.73 2.24
282 315 1.695893 CGTACGTGGCTGGCATCTTG 61.696 60.000 7.33 0.77 0.00 3.02
296 329 2.543067 ATCTTGGCCTTCAGACCCGC 62.543 60.000 3.32 0.00 0.00 6.13
317 350 1.132640 GTAGTTGCTTTGGCGCGAG 59.867 57.895 12.10 0.00 42.25 5.03
350 383 0.171903 GCTGCGTCCATCATTTGCTT 59.828 50.000 0.00 0.00 0.00 3.91
351 384 1.904144 CTGCGTCCATCATTTGCTTG 58.096 50.000 0.00 0.00 0.00 4.01
356 389 2.159476 CGTCCATCATTTGCTTGTCTGG 60.159 50.000 0.00 0.00 0.00 3.86
358 391 3.507233 GTCCATCATTTGCTTGTCTGGAA 59.493 43.478 0.00 0.00 34.03 3.53
394 433 2.639286 CAGTTGGCAGGCACGAAC 59.361 61.111 0.00 0.00 0.00 3.95
397 436 2.904866 TTGGCAGGCACGAACCAC 60.905 61.111 0.00 0.00 0.00 4.16
408 447 0.531311 ACGAACCACGAAGGGAACAC 60.531 55.000 0.00 0.00 45.77 3.32
409 448 0.249741 CGAACCACGAAGGGAACACT 60.250 55.000 0.00 0.00 45.77 3.55
418 457 0.602905 AAGGGAACACTTCTTCGCCG 60.603 55.000 0.00 0.00 34.42 6.46
419 458 2.677979 GGGAACACTTCTTCGCCGC 61.678 63.158 0.00 0.00 0.00 6.53
420 459 1.959226 GGAACACTTCTTCGCCGCA 60.959 57.895 0.00 0.00 0.00 5.69
421 460 1.298859 GGAACACTTCTTCGCCGCAT 61.299 55.000 0.00 0.00 0.00 4.73
422 461 0.179215 GAACACTTCTTCGCCGCATG 60.179 55.000 0.00 0.00 0.00 4.06
423 462 0.884704 AACACTTCTTCGCCGCATGT 60.885 50.000 0.00 0.00 0.00 3.21
436 887 1.269206 CCGCATGTTATCAACCATGCC 60.269 52.381 16.36 2.67 40.03 4.40
440 891 2.435372 TGTTATCAACCATGCCCCTC 57.565 50.000 0.00 0.00 0.00 4.30
443 894 2.952310 GTTATCAACCATGCCCCTCTTC 59.048 50.000 0.00 0.00 0.00 2.87
450 901 0.742281 CATGCCCCTCTTCTGTGACG 60.742 60.000 0.00 0.00 0.00 4.35
451 902 0.904865 ATGCCCCTCTTCTGTGACGA 60.905 55.000 0.00 0.00 0.00 4.20
452 903 1.079750 GCCCCTCTTCTGTGACGAC 60.080 63.158 0.00 0.00 0.00 4.34
455 906 1.248486 CCCTCTTCTGTGACGACTCA 58.752 55.000 0.00 0.00 0.00 3.41
464 919 5.048153 TCTGTGACGACTCATGTTTCTAG 57.952 43.478 0.00 0.00 0.00 2.43
465 920 4.760204 TCTGTGACGACTCATGTTTCTAGA 59.240 41.667 0.00 0.00 0.00 2.43
466 921 4.795268 TGTGACGACTCATGTTTCTAGAC 58.205 43.478 0.00 0.00 0.00 2.59
468 923 4.854291 GTGACGACTCATGTTTCTAGACAG 59.146 45.833 0.00 0.00 32.19 3.51
471 926 3.610242 CGACTCATGTTTCTAGACAGCAC 59.390 47.826 0.00 0.00 32.19 4.40
474 929 5.555017 ACTCATGTTTCTAGACAGCACAAT 58.445 37.500 0.00 0.00 32.19 2.71
493 948 5.696270 CACAATATCGGCTCAAGCATAACTA 59.304 40.000 4.13 0.00 44.36 2.24
498 953 2.604914 CGGCTCAAGCATAACTACACAG 59.395 50.000 4.13 0.00 44.36 3.66
510 965 8.190784 AGCATAACTACACAGGCAAATTAAATC 58.809 33.333 0.00 0.00 0.00 2.17
515 970 4.415596 ACACAGGCAAATTAAATCCTCCA 58.584 39.130 0.00 0.00 0.00 3.86
516 971 4.463891 ACACAGGCAAATTAAATCCTCCAG 59.536 41.667 0.00 0.00 0.00 3.86
521 976 6.097270 CAGGCAAATTAAATCCTCCAGATCAA 59.903 38.462 0.00 0.00 32.47 2.57
522 977 6.669154 AGGCAAATTAAATCCTCCAGATCAAA 59.331 34.615 0.00 0.00 32.47 2.69
527 982 1.207791 ATCCTCCAGATCAAACGGCT 58.792 50.000 0.00 0.00 0.00 5.52
543 998 1.133025 CGGCTTAGGTGATGGCTTTTG 59.867 52.381 0.00 0.00 0.00 2.44
544 999 2.171003 GGCTTAGGTGATGGCTTTTGT 58.829 47.619 0.00 0.00 0.00 2.83
563 1018 6.786967 TTTGTACCCTGATTAGAGGACTAC 57.213 41.667 0.00 0.00 34.69 2.73
564 1019 5.728937 TGTACCCTGATTAGAGGACTACT 57.271 43.478 0.00 0.00 34.69 2.57
566 1021 6.599445 TGTACCCTGATTAGAGGACTACTAC 58.401 44.000 0.00 0.00 34.69 2.73
567 1022 4.716794 ACCCTGATTAGAGGACTACTACG 58.283 47.826 0.00 0.00 34.69 3.51
568 1023 4.073549 CCCTGATTAGAGGACTACTACGG 58.926 52.174 0.00 0.00 34.69 4.02
571 1026 4.970711 TGATTAGAGGACTACTACGGAGG 58.029 47.826 0.00 0.00 0.00 4.30
590 1045 4.277921 GGAGGAAGGAAGCATCATTCATTC 59.722 45.833 16.93 13.03 45.74 2.67
607 1062 3.719479 TCATTCCATCCCCGGATTCTTAA 59.281 43.478 0.73 0.00 34.19 1.85
610 1065 2.441750 TCCATCCCCGGATTCTTAAAGG 59.558 50.000 0.73 0.00 31.62 3.11
618 1073 2.686715 CGGATTCTTAAAGGCACCCCAT 60.687 50.000 0.00 0.00 0.00 4.00
619 1074 2.959030 GGATTCTTAAAGGCACCCCATC 59.041 50.000 0.00 0.00 0.00 3.51
620 1075 3.627237 GGATTCTTAAAGGCACCCCATCA 60.627 47.826 0.00 0.00 0.00 3.07
621 1076 3.756082 TTCTTAAAGGCACCCCATCAT 57.244 42.857 0.00 0.00 0.00 2.45
622 1077 3.756082 TCTTAAAGGCACCCCATCATT 57.244 42.857 0.00 0.00 0.00 2.57
623 1078 3.631250 TCTTAAAGGCACCCCATCATTC 58.369 45.455 0.00 0.00 0.00 2.67
624 1079 3.269381 TCTTAAAGGCACCCCATCATTCT 59.731 43.478 0.00 0.00 0.00 2.40
625 1080 4.476846 TCTTAAAGGCACCCCATCATTCTA 59.523 41.667 0.00 0.00 0.00 2.10
626 1081 2.736670 AAGGCACCCCATCATTCTAC 57.263 50.000 0.00 0.00 0.00 2.59
627 1082 0.846693 AGGCACCCCATCATTCTACC 59.153 55.000 0.00 0.00 0.00 3.18
628 1083 0.550914 GGCACCCCATCATTCTACCA 59.449 55.000 0.00 0.00 0.00 3.25
629 1084 1.680338 GCACCCCATCATTCTACCAC 58.320 55.000 0.00 0.00 0.00 4.16
630 1085 1.064758 GCACCCCATCATTCTACCACA 60.065 52.381 0.00 0.00 0.00 4.17
631 1086 2.620367 GCACCCCATCATTCTACCACAA 60.620 50.000 0.00 0.00 0.00 3.33
632 1087 3.902218 CACCCCATCATTCTACCACAAT 58.098 45.455 0.00 0.00 0.00 2.71
633 1088 3.633525 CACCCCATCATTCTACCACAATG 59.366 47.826 0.00 0.00 33.22 2.82
634 1089 3.225104 CCCCATCATTCTACCACAATGG 58.775 50.000 0.00 0.00 45.02 3.16
635 1090 3.117550 CCCCATCATTCTACCACAATGGA 60.118 47.826 0.84 0.00 40.96 3.41
636 1091 4.448200 CCCCATCATTCTACCACAATGGAT 60.448 45.833 0.84 0.00 40.96 3.41
637 1092 4.521639 CCCATCATTCTACCACAATGGATG 59.478 45.833 0.84 0.00 40.96 3.51
643 1098 3.289836 TCTACCACAATGGATGGCATTG 58.710 45.455 0.00 0.00 40.96 2.82
651 1106 4.342951 ACAATGGATGGCATTGGAATACAG 59.657 41.667 0.00 0.00 42.53 2.74
656 1111 3.448093 TGGCATTGGAATACAGGTCAA 57.552 42.857 0.00 0.00 0.00 3.18
667 1122 8.995027 TGGAATACAGGTCAAAATAATATGCT 57.005 30.769 0.00 0.00 0.00 3.79
670 1125 7.672983 ATACAGGTCAAAATAATATGCTCGG 57.327 36.000 0.00 0.00 0.00 4.63
672 1127 5.527582 ACAGGTCAAAATAATATGCTCGGAC 59.472 40.000 0.00 0.00 0.00 4.79
675 1130 6.929606 AGGTCAAAATAATATGCTCGGACTAC 59.070 38.462 0.00 0.00 0.00 2.73
676 1131 6.147328 GGTCAAAATAATATGCTCGGACTACC 59.853 42.308 0.00 0.00 0.00 3.18
677 1132 6.704493 GTCAAAATAATATGCTCGGACTACCA 59.296 38.462 0.00 0.00 35.59 3.25
678 1133 6.704493 TCAAAATAATATGCTCGGACTACCAC 59.296 38.462 0.00 0.00 35.59 4.16
679 1134 5.801531 AATAATATGCTCGGACTACCACA 57.198 39.130 0.00 0.00 35.59 4.17
684 1147 0.391130 GCTCGGACTACCACAATGCA 60.391 55.000 0.00 0.00 35.59 3.96
692 1155 2.292267 CTACCACAATGCATCTGGTCC 58.708 52.381 25.25 0.00 39.16 4.46
696 1159 0.324614 ACAATGCATCTGGTCCGTGA 59.675 50.000 0.00 0.00 0.00 4.35
699 1162 1.485124 ATGCATCTGGTCCGTGACTA 58.515 50.000 0.00 0.00 32.47 2.59
703 1166 3.270877 GCATCTGGTCCGTGACTATTTT 58.729 45.455 4.41 0.00 32.47 1.82
704 1167 3.063997 GCATCTGGTCCGTGACTATTTTG 59.936 47.826 4.41 0.00 32.47 2.44
706 1169 5.416083 CATCTGGTCCGTGACTATTTTGTA 58.584 41.667 4.41 0.00 32.47 2.41
709 1175 3.005684 TGGTCCGTGACTATTTTGTACGT 59.994 43.478 0.00 0.00 33.28 3.57
728 1194 8.770850 TGTACGTAAAACTTTTGAAACATAGC 57.229 30.769 0.00 0.00 0.00 2.97
729 1195 8.396390 TGTACGTAAAACTTTTGAAACATAGCA 58.604 29.630 0.00 0.00 0.00 3.49
730 1196 9.389570 GTACGTAAAACTTTTGAAACATAGCAT 57.610 29.630 0.00 0.00 0.00 3.79
731 1197 8.865590 ACGTAAAACTTTTGAAACATAGCATT 57.134 26.923 0.00 0.00 0.00 3.56
732 1198 8.964150 ACGTAAAACTTTTGAAACATAGCATTC 58.036 29.630 0.00 0.00 0.00 2.67
733 1199 8.963130 CGTAAAACTTTTGAAACATAGCATTCA 58.037 29.630 0.00 0.00 33.93 2.57
743 1209 7.243487 TGAAACATAGCATTCAAATTCGTCTC 58.757 34.615 0.00 0.00 32.89 3.36
753 1219 7.428183 GCATTCAAATTCGTCTCGCTTTATAAA 59.572 33.333 0.00 0.00 0.00 1.40
754 1220 9.438291 CATTCAAATTCGTCTCGCTTTATAAAT 57.562 29.630 0.00 0.00 0.00 1.40
814 1283 4.640771 ATCCTCTTACAAAGCAAGGTGA 57.359 40.909 0.00 0.00 0.00 4.02
818 1287 3.686016 TCTTACAAAGCAAGGTGATCCC 58.314 45.455 0.00 0.00 0.00 3.85
821 1290 2.450476 ACAAAGCAAGGTGATCCCATC 58.550 47.619 3.45 0.00 34.66 3.51
822 1291 1.402968 CAAAGCAAGGTGATCCCATCG 59.597 52.381 3.45 0.00 34.66 3.84
860 1329 2.048222 CAGTCCGCACACCGACAT 60.048 61.111 0.00 0.00 40.02 3.06
869 1338 1.586422 CACACCGACATCCATGGATC 58.414 55.000 24.93 14.54 31.62 3.36
870 1339 1.134431 CACACCGACATCCATGGATCA 60.134 52.381 24.93 0.00 31.62 2.92
871 1340 1.770658 ACACCGACATCCATGGATCAT 59.229 47.619 24.93 15.66 31.62 2.45
872 1341 2.148768 CACCGACATCCATGGATCATG 58.851 52.381 24.93 17.65 41.10 3.07
873 1342 2.049372 ACCGACATCCATGGATCATGA 58.951 47.619 24.93 0.00 43.81 3.07
874 1343 2.641321 ACCGACATCCATGGATCATGAT 59.359 45.455 24.93 8.25 43.81 2.45
875 1344 3.007635 CCGACATCCATGGATCATGATG 58.992 50.000 24.93 16.16 43.81 3.07
876 1345 3.307199 CCGACATCCATGGATCATGATGA 60.307 47.826 24.93 3.89 43.81 2.92
877 1346 4.320870 CGACATCCATGGATCATGATGAA 58.679 43.478 24.93 0.68 43.81 2.57
878 1347 4.941873 CGACATCCATGGATCATGATGAAT 59.058 41.667 24.93 3.34 43.81 2.57
879 1348 5.064834 CGACATCCATGGATCATGATGAATC 59.935 44.000 24.93 7.64 43.81 2.52
890 1359 2.643995 TGATGAATCCGACCATGCAT 57.356 45.000 0.00 0.00 0.00 3.96
891 1360 2.223745 TGATGAATCCGACCATGCATG 58.776 47.619 20.19 20.19 0.00 4.06
892 1361 0.956633 ATGAATCCGACCATGCATGC 59.043 50.000 21.69 11.82 0.00 4.06
893 1362 0.394080 TGAATCCGACCATGCATGCA 60.394 50.000 25.04 25.04 0.00 3.96
894 1363 0.956633 GAATCCGACCATGCATGCAT 59.043 50.000 27.46 27.46 37.08 3.96
897 1366 1.102809 TCCGACCATGCATGCATTCC 61.103 55.000 30.32 19.42 33.90 3.01
900 1369 0.387929 GACCATGCATGCATTCCCAG 59.612 55.000 30.32 18.05 33.90 4.45
907 1376 1.395635 CATGCATTCCCAGCTTAGCA 58.604 50.000 7.07 0.00 36.34 3.49
918 1387 3.375299 CCCAGCTTAGCAAACATGTAGTC 59.625 47.826 7.07 0.00 0.00 2.59
920 1389 3.926527 CAGCTTAGCAAACATGTAGTCGA 59.073 43.478 7.07 0.00 0.00 4.20
935 1404 8.922676 ACATGTAGTCGAATAAAAGTTGTACAG 58.077 33.333 0.00 0.00 0.00 2.74
937 1406 8.511465 TGTAGTCGAATAAAAGTTGTACAGAC 57.489 34.615 0.00 0.00 0.00 3.51
948 1417 3.569277 AGTTGTACAGACATTTGCATGCA 59.431 39.130 18.46 18.46 34.86 3.96
957 1426 8.774890 ACAGACATTTGCATGCATAAAAATAA 57.225 26.923 23.37 11.35 33.05 1.40
958 1427 8.875803 ACAGACATTTGCATGCATAAAAATAAG 58.124 29.630 23.37 9.53 33.05 1.73
966 1435 9.481340 TTGCATGCATAAAAATAAGTACAAACA 57.519 25.926 23.37 0.00 0.00 2.83
967 1436 9.650539 TGCATGCATAAAAATAAGTACAAACAT 57.349 25.926 18.46 0.00 0.00 2.71
1061 1530 1.181098 AAGCAACACCACCTCCATGC 61.181 55.000 0.00 0.00 0.00 4.06
1117 1586 0.458260 TGCTGCAGCCAAGCATAATG 59.542 50.000 34.64 0.00 44.68 1.90
1122 1591 2.028043 GCCAAGCATAATGCCGCC 59.972 61.111 0.00 0.00 46.52 6.13
1162 1631 0.839853 AGCTTCTTCCCTGCTCCAGT 60.840 55.000 0.00 0.00 30.41 4.00
1164 1633 1.818642 CTTCTTCCCTGCTCCAGTTG 58.181 55.000 0.00 0.00 0.00 3.16
1167 1636 1.774254 TCTTCCCTGCTCCAGTTGAAA 59.226 47.619 0.00 0.00 0.00 2.69
1170 1639 1.202806 TCCCTGCTCCAGTTGAAACAG 60.203 52.381 0.00 0.00 0.00 3.16
1260 1729 1.807165 CGCCTGTGATGTGTCCTCG 60.807 63.158 0.00 0.00 0.00 4.63
1320 1789 2.915659 AGCCGTCGTCTTGACCCA 60.916 61.111 0.00 0.00 45.23 4.51
1345 1814 3.325293 TCTTCAACCTCACATCTCTGC 57.675 47.619 0.00 0.00 0.00 4.26
1380 1849 1.713830 GTACAATGACTTCGGCGCC 59.286 57.895 19.07 19.07 0.00 6.53
1482 1951 1.473258 TTCCCATTGGAATTGCTCGG 58.527 50.000 3.62 0.00 45.88 4.63
1581 2050 5.876651 TGGCAAATCTAAGCTATCTGAGA 57.123 39.130 0.00 0.00 34.35 3.27
1584 2053 6.098838 TGGCAAATCTAAGCTATCTGAGAGAA 59.901 38.462 2.99 0.00 33.36 2.87
1590 2059 1.953686 AGCTATCTGAGAGAACTCCGC 59.046 52.381 2.99 0.00 41.99 5.54
1750 2225 4.941325 TCCCTAACGATTATCGATCTCG 57.059 45.455 21.93 21.88 43.74 4.04
1759 2234 5.983720 ACGATTATCGATCTCGGAAACAATT 59.016 36.000 21.93 7.31 43.74 2.32
1760 2235 6.074302 ACGATTATCGATCTCGGAAACAATTG 60.074 38.462 21.93 3.24 43.74 2.32
1785 2260 1.876156 CTCACTGGCAAAGTTCCTGAC 59.124 52.381 0.00 0.00 36.83 3.51
1848 2323 3.944015 CAGGATGTTCTTTTAGAGGGCAG 59.056 47.826 0.00 0.00 0.00 4.85
1849 2324 3.846588 AGGATGTTCTTTTAGAGGGCAGA 59.153 43.478 0.00 0.00 0.00 4.26
1920 2395 4.065789 CAAGGAGCCCTAATATTTCGGTC 58.934 47.826 0.00 0.00 31.13 4.79
1939 2414 3.914426 TCTGCTTACCAGATTTCCCTC 57.086 47.619 0.00 0.00 45.44 4.30
1944 2419 3.308473 GCTTACCAGATTTCCCTCTTGGT 60.308 47.826 0.00 0.00 33.82 3.67
1948 2423 4.860022 ACCAGATTTCCCTCTTGGTAATG 58.140 43.478 0.00 0.00 34.53 1.90
1980 2455 3.926058 TTAAATCTAGCAGGGACCACC 57.074 47.619 0.00 0.00 40.67 4.61
1981 2456 0.541863 AAATCTAGCAGGGACCACCG 59.458 55.000 0.00 0.00 46.96 4.94
1997 2472 3.512329 ACCACCGTGTCTTGTGATATACA 59.488 43.478 0.00 0.00 37.56 2.29
2001 2476 3.430236 CCGTGTCTTGTGATATACAGCCA 60.430 47.826 0.00 0.00 41.10 4.75
2024 2499 7.766278 GCCATCTCTTACAAATCTCAAGTCTTA 59.234 37.037 0.00 0.00 0.00 2.10
2395 2872 5.313712 ACTTGGTCCGACTTGAATATTTGT 58.686 37.500 0.00 0.00 0.00 2.83
2401 2878 9.268268 TGGTCCGACTTGAATATTTGTATATTC 57.732 33.333 9.77 9.77 46.81 1.75
2444 2942 4.447138 TCTCTTCCCACCTAAAAGCAAA 57.553 40.909 0.00 0.00 0.00 3.68
2446 2944 4.141251 TCTCTTCCCACCTAAAAGCAAAGT 60.141 41.667 0.00 0.00 0.00 2.66
2450 2948 3.634910 TCCCACCTAAAAGCAAAGTTGTC 59.365 43.478 0.00 0.00 0.00 3.18
2490 2990 4.848562 AGATAGTCGACACACTTGTTGA 57.151 40.909 19.50 0.00 42.95 3.18
2521 3023 4.256983 TCTCTCTGATAAGAGGGCTTCA 57.743 45.455 7.28 0.00 42.58 3.02
2524 3026 5.304101 TCTCTCTGATAAGAGGGCTTCATTC 59.696 44.000 7.28 0.00 42.58 2.67
2578 3407 7.221450 ACAAGAGTCTAGCATAGTACCTAGAG 58.779 42.308 6.79 0.13 40.33 2.43
2589 3418 1.134560 GTACCTAGAGGAGCACAACGG 59.865 57.143 1.60 0.00 38.94 4.44
2590 3419 0.251653 ACCTAGAGGAGCACAACGGA 60.252 55.000 1.60 0.00 38.94 4.69
2596 3425 2.000447 GAGGAGCACAACGGAACATAC 59.000 52.381 0.00 0.00 0.00 2.39
2691 3575 3.181496 GGCGGATTTCTCTGATGTTTTCC 60.181 47.826 0.00 0.00 0.00 3.13
2760 3646 8.605746 TGCGTTGGTGTATATTTTGACTAATAC 58.394 33.333 0.00 0.00 0.00 1.89
2780 3669 3.230134 ACTAACCTTTTTCATGCAGGCA 58.770 40.909 0.00 0.00 0.00 4.75
2818 3707 3.583383 GCTCTTCCAGCGTTGCAT 58.417 55.556 0.00 0.00 38.76 3.96
2826 3715 3.260475 TCCAGCGTTGCATACACTTAT 57.740 42.857 0.00 0.00 0.00 1.73
2827 3716 2.935849 TCCAGCGTTGCATACACTTATG 59.064 45.455 0.00 0.00 38.57 1.90
2890 3779 0.323629 CCCCGTGGTCTTCAAGCTTA 59.676 55.000 0.00 0.00 0.00 3.09
2892 3781 2.280628 CCCGTGGTCTTCAAGCTTATC 58.719 52.381 0.00 0.00 0.00 1.75
2901 3790 8.394121 GTGGTCTTCAAGCTTATCTTCTATTTG 58.606 37.037 0.00 0.00 31.27 2.32
2979 3868 6.477053 TCATCTCAAAGATCTCTACCTTGG 57.523 41.667 0.00 0.00 31.32 3.61
2992 3881 7.914427 TCTCTACCTTGGCTCAAATAGATTA 57.086 36.000 8.05 1.73 0.00 1.75
2993 3882 7.957002 TCTCTACCTTGGCTCAAATAGATTAG 58.043 38.462 8.05 0.00 0.00 1.73
3043 3932 3.008049 GGAGGTTGAAGAGCCTTAGTTCA 59.992 47.826 0.00 0.00 34.81 3.18
3093 3982 3.026630 TGTGGACGAAGAAGATGACAC 57.973 47.619 0.00 0.00 0.00 3.67
3125 4014 3.350833 TCTCTCCCTAACGTCAACTACC 58.649 50.000 0.00 0.00 0.00 3.18
3192 4081 9.747898 ACTGAGATATCTAGGTGGAGTTATAAG 57.252 37.037 4.89 0.00 0.00 1.73
3205 4094 4.099727 GGAGTTATAAGCCTCGACCTTTCT 59.900 45.833 0.00 0.00 0.00 2.52
3309 4198 9.226606 CCATAACATGTTTACTAGTTTGGAGAA 57.773 33.333 17.78 0.00 30.63 2.87
3368 4257 9.982651 CCATCCTCGATCTTAGTTTTAATAGAA 57.017 33.333 0.00 0.00 0.00 2.10
3413 4302 7.913789 ACCAGTAACATTATACTTCTCACCAA 58.086 34.615 0.00 0.00 33.90 3.67
3445 4337 7.167468 GTCACATACAATGAAGTTTTGTTGGAC 59.833 37.037 0.00 0.29 38.26 4.02
3481 4373 7.509546 ACAACTTCTCTTCCATTCTAGACAAA 58.490 34.615 0.00 0.00 0.00 2.83
3517 4412 5.818336 TGTTCAAAACGTCACCTATCTCAAA 59.182 36.000 0.00 0.00 0.00 2.69
3568 4463 6.594744 TGTATCATCATCCATTTGTAGTGCT 58.405 36.000 0.00 0.00 0.00 4.40
3760 4661 7.972301 TGAATGGAAACCAAATTGAAGGTAAT 58.028 30.769 0.00 0.00 36.95 1.89
3761 4662 8.435982 TGAATGGAAACCAAATTGAAGGTAATT 58.564 29.630 0.00 0.00 36.95 1.40
3814 4715 4.612264 AGAGCTTTTTGATGTTGGCAAT 57.388 36.364 1.92 0.00 0.00 3.56
3937 4838 8.677148 ATATTAAAGCTGACCGTACAATCAAT 57.323 30.769 0.00 0.00 0.00 2.57
3951 4867 9.916397 CCGTACAATCAATAAATACTTCTCAAC 57.084 33.333 0.00 0.00 0.00 3.18
3995 4911 3.202906 TCCAACAACTTCTCTGGAAACG 58.797 45.455 0.00 0.00 35.02 3.60
4057 4973 5.163581 GGAAAATGTCAATGATGAGGGACAG 60.164 44.000 0.00 0.00 42.83 3.51
4061 4977 3.012518 GTCAATGATGAGGGACAGGTTG 58.987 50.000 0.00 0.00 35.88 3.77
4069 4985 1.201429 AGGGACAGGTTGTAGGGCAG 61.201 60.000 0.00 0.00 0.00 4.85
4081 4997 1.000274 GTAGGGCAGCAAACAAACCTG 60.000 52.381 0.00 0.00 0.00 4.00
4085 5001 0.461693 GCAGCAAACAAACCTGCCAA 60.462 50.000 0.62 0.00 44.60 4.52
4137 5053 7.609146 TGTGACATTCAAAGATCTCAAGCTTAT 59.391 33.333 0.00 0.00 29.07 1.73
4199 5115 6.627395 TTTCACATAACTCGTTTGATGGTT 57.373 33.333 0.00 0.00 0.00 3.67
4227 5143 0.813821 GAGTCAATTGGGAGGCTTGC 59.186 55.000 5.42 0.00 0.00 4.01
4231 5147 1.203038 TCAATTGGGAGGCTTGCTTCA 60.203 47.619 5.42 0.00 0.00 3.02
4243 5159 1.467734 CTTGCTTCACTGCATGGACTC 59.532 52.381 0.00 0.00 42.96 3.36
4512 5428 5.065914 TCCACTCTCCAAAGAATGTGAAAG 58.934 41.667 0.00 0.00 30.95 2.62
4652 5568 1.067706 CATTGGCATTCTTGTTGCGGA 60.068 47.619 0.00 0.00 41.07 5.54
4660 5576 4.675146 GCATTCTTGTTGCGGATGTATTGT 60.675 41.667 0.00 0.00 0.00 2.71
4661 5577 4.418013 TTCTTGTTGCGGATGTATTGTG 57.582 40.909 0.00 0.00 0.00 3.33
4663 5579 2.192664 TGTTGCGGATGTATTGTGGT 57.807 45.000 0.00 0.00 0.00 4.16
4747 5667 9.485206 GTGTACTGTACTAAATTTTCTTCCTGA 57.515 33.333 17.98 0.00 0.00 3.86
4751 5671 9.847224 ACTGTACTAAATTTTCTTCCTGAAAGA 57.153 29.630 0.00 0.00 44.40 2.52
4762 5682 6.305272 TCTTCCTGAAAGAAGATATGCAGT 57.695 37.500 0.00 0.00 45.67 4.40
4763 5683 6.111382 TCTTCCTGAAAGAAGATATGCAGTG 58.889 40.000 0.00 0.00 45.67 3.66
4764 5684 5.426689 TCCTGAAAGAAGATATGCAGTGT 57.573 39.130 0.00 0.00 34.07 3.55
4765 5685 5.181009 TCCTGAAAGAAGATATGCAGTGTG 58.819 41.667 0.00 0.00 34.07 3.82
4766 5686 4.940046 CCTGAAAGAAGATATGCAGTGTGT 59.060 41.667 0.00 0.00 34.07 3.72
4767 5687 5.413833 CCTGAAAGAAGATATGCAGTGTGTT 59.586 40.000 0.00 0.00 34.07 3.32
4768 5688 6.245115 TGAAAGAAGATATGCAGTGTGTTG 57.755 37.500 0.00 0.00 0.00 3.33
4769 5689 5.764686 TGAAAGAAGATATGCAGTGTGTTGT 59.235 36.000 0.00 0.00 0.00 3.32
4770 5690 6.262944 TGAAAGAAGATATGCAGTGTGTTGTT 59.737 34.615 0.00 0.00 0.00 2.83
4771 5691 6.639632 AAGAAGATATGCAGTGTGTTGTTT 57.360 33.333 0.00 0.00 0.00 2.83
4772 5692 6.246420 AGAAGATATGCAGTGTGTTGTTTC 57.754 37.500 0.00 0.00 0.00 2.78
5014 5937 0.814457 TGCCGAATGTTTATGTGCCC 59.186 50.000 0.00 0.00 0.00 5.36
5105 6037 5.281693 TGTTTCATACACGATGCTCAAAG 57.718 39.130 0.00 0.00 35.29 2.77
5106 6038 4.994217 TGTTTCATACACGATGCTCAAAGA 59.006 37.500 0.00 0.00 35.29 2.52
5107 6039 5.107104 TGTTTCATACACGATGCTCAAAGAC 60.107 40.000 0.00 0.00 35.29 3.01
5108 6040 4.456280 TCATACACGATGCTCAAAGACT 57.544 40.909 0.00 0.00 35.29 3.24
5109 6041 4.176271 TCATACACGATGCTCAAAGACTG 58.824 43.478 0.00 0.00 35.29 3.51
5110 6042 1.151668 ACACGATGCTCAAAGACTGC 58.848 50.000 0.00 0.00 0.00 4.40
5111 6043 1.270518 ACACGATGCTCAAAGACTGCT 60.271 47.619 0.00 0.00 0.00 4.24
5112 6044 2.029020 ACACGATGCTCAAAGACTGCTA 60.029 45.455 0.00 0.00 0.00 3.49
5113 6045 3.193263 CACGATGCTCAAAGACTGCTAT 58.807 45.455 0.00 0.00 0.00 2.97
5114 6046 3.244814 CACGATGCTCAAAGACTGCTATC 59.755 47.826 0.00 0.00 0.00 2.08
5115 6047 3.118992 ACGATGCTCAAAGACTGCTATCA 60.119 43.478 0.00 0.00 0.00 2.15
5116 6048 3.867493 CGATGCTCAAAGACTGCTATCAA 59.133 43.478 0.00 0.00 0.00 2.57
5117 6049 4.330894 CGATGCTCAAAGACTGCTATCAAA 59.669 41.667 0.00 0.00 0.00 2.69
5118 6050 5.557891 ATGCTCAAAGACTGCTATCAAAC 57.442 39.130 0.00 0.00 0.00 2.93
5119 6051 4.388485 TGCTCAAAGACTGCTATCAAACA 58.612 39.130 0.00 0.00 0.00 2.83
5120 6052 4.821260 TGCTCAAAGACTGCTATCAAACAA 59.179 37.500 0.00 0.00 0.00 2.83
5121 6053 5.299028 TGCTCAAAGACTGCTATCAAACAAA 59.701 36.000 0.00 0.00 0.00 2.83
5122 6054 6.016024 TGCTCAAAGACTGCTATCAAACAAAT 60.016 34.615 0.00 0.00 0.00 2.32
5123 6055 7.174772 TGCTCAAAGACTGCTATCAAACAAATA 59.825 33.333 0.00 0.00 0.00 1.40
5124 6056 8.023128 GCTCAAAGACTGCTATCAAACAAATAA 58.977 33.333 0.00 0.00 0.00 1.40
5125 6057 9.897744 CTCAAAGACTGCTATCAAACAAATAAA 57.102 29.630 0.00 0.00 0.00 1.40
5163 6095 6.751888 GCTATCAAACAAATAAAACGGCTGAT 59.248 34.615 0.00 0.00 0.00 2.90
5219 6151 7.040132 GGTTTTCTCATCCTGAAGACTGAAATT 60.040 37.037 0.00 0.00 31.72 1.82
5250 6182 1.208535 CAACGGGATACAGCCAGGTAA 59.791 52.381 0.00 0.00 39.74 2.85
5284 6216 5.935789 TCAAATTTAGTACAGTACCAGTGGC 59.064 40.000 9.78 0.00 0.00 5.01
5493 6431 8.400186 TGAGATACTCGTGACGAACAATTTATA 58.600 33.333 9.64 0.00 34.74 0.98
5499 6437 8.186163 ACTCGTGACGAACAATTTATATACTGA 58.814 33.333 9.64 0.00 34.74 3.41
5502 6440 8.964150 CGTGACGAACAATTTATATACTGATGA 58.036 33.333 0.00 0.00 0.00 2.92
5518 6456 5.245531 ACTGATGATTGCTTTTACCTTCGA 58.754 37.500 0.00 0.00 0.00 3.71
5525 6463 9.921637 ATGATTGCTTTTACCTTCGAAAAATTA 57.078 25.926 0.00 0.00 0.00 1.40
5526 6464 9.187455 TGATTGCTTTTACCTTCGAAAAATTAC 57.813 29.630 0.00 0.00 0.00 1.89
5529 6467 6.040616 TGCTTTTACCTTCGAAAAATTACCCA 59.959 34.615 0.00 0.00 0.00 4.51
5530 6468 6.924612 GCTTTTACCTTCGAAAAATTACCCAA 59.075 34.615 0.00 0.00 0.00 4.12
5593 6538 2.102925 ACCAAACCAATGGCTTCAGTTG 59.897 45.455 0.00 0.00 44.75 3.16
5607 6552 3.272574 TCAGTTGAGAGATTGGGCATC 57.727 47.619 0.00 0.00 0.00 3.91
5653 6598 6.047870 CACAATCACAAAAGAAATTCCACCA 58.952 36.000 0.00 0.00 0.00 4.17
5661 6606 6.183361 ACAAAAGAAATTCCACCAAATAGGCA 60.183 34.615 0.00 0.00 43.14 4.75
5662 6607 5.665916 AAGAAATTCCACCAAATAGGCAG 57.334 39.130 0.00 0.00 43.14 4.85
5670 6615 3.511146 CCACCAAATAGGCAGTCAAACAT 59.489 43.478 0.00 0.00 43.14 2.71
5673 6618 3.119029 CCAAATAGGCAGTCAAACATGGG 60.119 47.826 0.00 0.00 0.00 4.00
5676 6621 0.606401 AGGCAGTCAAACATGGGACG 60.606 55.000 0.00 0.73 39.01 4.79
5677 6622 0.889186 GGCAGTCAAACATGGGACGT 60.889 55.000 0.00 0.00 39.01 4.34
5681 6626 0.788391 GTCAAACATGGGACGTCGAC 59.212 55.000 9.92 5.18 0.00 4.20
5684 6629 0.320421 AAACATGGGACGTCGACCAG 60.320 55.000 17.00 11.98 40.67 4.00
5711 6656 5.233083 TGATATGCTGAATTGGTCTAGGG 57.767 43.478 0.00 0.00 0.00 3.53
5726 6698 0.175760 TAGGGCAGCAACACGAGATC 59.824 55.000 0.00 0.00 0.00 2.75
5756 6728 5.413833 CACTCACAGCCTCAGAATTGTAAAT 59.586 40.000 0.00 0.00 0.00 1.40
5757 6729 5.645497 ACTCACAGCCTCAGAATTGTAAATC 59.355 40.000 0.00 0.00 0.00 2.17
5758 6730 4.943705 TCACAGCCTCAGAATTGTAAATCC 59.056 41.667 0.00 0.00 0.00 3.01
5760 6732 5.183713 CACAGCCTCAGAATTGTAAATCCAA 59.816 40.000 0.00 0.00 0.00 3.53
5769 6741 8.054572 TCAGAATTGTAAATCCAATCTCCATCA 58.945 33.333 0.00 0.00 34.01 3.07
5775 6747 3.872459 ATCCAATCTCCATCACCTTCC 57.128 47.619 0.00 0.00 0.00 3.46
5789 6764 2.021457 ACCTTCCGTGGTGAAACAAAG 58.979 47.619 0.00 0.00 39.98 2.77
5809 6784 3.436243 AGTCTGACTAGTCCCTTCAAGG 58.564 50.000 20.11 0.00 34.30 3.61
5817 6792 5.810095 ACTAGTCCCTTCAAGGAAAATCTG 58.190 41.667 4.43 0.00 37.67 2.90
5818 6793 4.731313 AGTCCCTTCAAGGAAAATCTGT 57.269 40.909 4.43 0.00 37.67 3.41
5819 6794 5.843019 AGTCCCTTCAAGGAAAATCTGTA 57.157 39.130 4.43 0.00 37.67 2.74
5820 6795 5.561679 AGTCCCTTCAAGGAAAATCTGTAC 58.438 41.667 4.43 0.00 37.67 2.90
5821 6796 5.073144 AGTCCCTTCAAGGAAAATCTGTACA 59.927 40.000 4.43 0.00 37.67 2.90
5822 6797 5.768164 GTCCCTTCAAGGAAAATCTGTACAA 59.232 40.000 4.43 0.00 37.67 2.41
5823 6798 6.434340 GTCCCTTCAAGGAAAATCTGTACAAT 59.566 38.462 4.43 0.00 37.67 2.71
5824 6799 6.434028 TCCCTTCAAGGAAAATCTGTACAATG 59.566 38.462 4.43 0.00 37.67 2.82
5825 6800 6.095377 CCTTCAAGGAAAATCTGTACAATGC 58.905 40.000 0.00 0.00 37.67 3.56
5826 6801 6.294675 CCTTCAAGGAAAATCTGTACAATGCA 60.295 38.462 0.00 0.00 37.67 3.96
5851 6826 3.903783 GCAAACTGGCGGCATAGA 58.096 55.556 13.85 0.00 0.00 1.98
5854 6829 1.134946 GCAAACTGGCGGCATAGAAAT 59.865 47.619 13.85 0.00 0.00 2.17
5855 6830 2.357637 GCAAACTGGCGGCATAGAAATA 59.642 45.455 13.85 0.00 0.00 1.40
5858 6833 5.591099 CAAACTGGCGGCATAGAAATAATT 58.409 37.500 13.85 0.00 0.00 1.40
5859 6834 6.734137 CAAACTGGCGGCATAGAAATAATTA 58.266 36.000 13.85 0.00 0.00 1.40
5860 6835 7.370383 CAAACTGGCGGCATAGAAATAATTAT 58.630 34.615 13.85 0.00 0.00 1.28
5861 6836 8.511321 CAAACTGGCGGCATAGAAATAATTATA 58.489 33.333 13.85 0.00 0.00 0.98
5862 6837 7.611213 ACTGGCGGCATAGAAATAATTATAC 57.389 36.000 13.85 0.00 0.00 1.47
5863 6838 6.312918 ACTGGCGGCATAGAAATAATTATACG 59.687 38.462 13.85 0.00 0.00 3.06
5864 6839 5.064198 TGGCGGCATAGAAATAATTATACGC 59.936 40.000 7.97 0.00 35.71 4.42
5866 6841 6.238374 GGCGGCATAGAAATAATTATACGCAT 60.238 38.462 3.07 0.00 36.96 4.73
5867 6842 6.846283 GCGGCATAGAAATAATTATACGCATC 59.154 38.462 0.00 0.00 36.11 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 7.554118 TGGTAAGCAATCCAAACAATTCAAAAA 59.446 29.630 0.00 0.00 0.00 1.94
20 21 7.011857 GTGGTAAGCAATCCAAACAATTCAAAA 59.988 33.333 0.00 0.00 35.38 2.44
21 22 6.481644 GTGGTAAGCAATCCAAACAATTCAAA 59.518 34.615 0.00 0.00 35.38 2.69
22 23 5.988561 GTGGTAAGCAATCCAAACAATTCAA 59.011 36.000 0.00 0.00 35.38 2.69
23 24 5.069648 TGTGGTAAGCAATCCAAACAATTCA 59.930 36.000 0.00 0.00 35.38 2.57
24 25 5.537188 TGTGGTAAGCAATCCAAACAATTC 58.463 37.500 0.00 0.00 35.38 2.17
25 26 5.543507 TGTGGTAAGCAATCCAAACAATT 57.456 34.783 0.00 0.00 35.38 2.32
26 27 5.011943 ACATGTGGTAAGCAATCCAAACAAT 59.988 36.000 0.00 0.00 35.38 2.71
27 28 4.343526 ACATGTGGTAAGCAATCCAAACAA 59.656 37.500 0.00 0.00 35.38 2.83
28 29 3.894427 ACATGTGGTAAGCAATCCAAACA 59.106 39.130 0.00 0.00 35.38 2.83
29 30 4.519540 ACATGTGGTAAGCAATCCAAAC 57.480 40.909 0.00 0.00 35.38 2.93
30 31 5.069648 TGAAACATGTGGTAAGCAATCCAAA 59.930 36.000 0.00 0.00 35.38 3.28
31 32 4.586421 TGAAACATGTGGTAAGCAATCCAA 59.414 37.500 0.00 0.00 35.38 3.53
32 33 4.148079 TGAAACATGTGGTAAGCAATCCA 58.852 39.130 0.00 0.00 0.00 3.41
33 34 4.782019 TGAAACATGTGGTAAGCAATCC 57.218 40.909 0.00 0.00 0.00 3.01
34 35 5.574055 CACATGAAACATGTGGTAAGCAATC 59.426 40.000 26.94 0.00 44.04 2.67
35 36 5.472148 CACATGAAACATGTGGTAAGCAAT 58.528 37.500 26.94 0.00 44.04 3.56
36 37 4.869215 CACATGAAACATGTGGTAAGCAA 58.131 39.130 26.94 0.00 44.04 3.91
37 38 4.502171 CACATGAAACATGTGGTAAGCA 57.498 40.909 26.94 0.00 44.04 3.91
61 62 8.915654 GGAACAACAATGATGAAAGTACATTTC 58.084 33.333 0.00 3.47 46.37 2.17
62 63 7.594758 CGGAACAACAATGATGAAAGTACATTT 59.405 33.333 0.00 0.00 32.92 2.32
63 64 7.040755 TCGGAACAACAATGATGAAAGTACATT 60.041 33.333 0.00 0.00 35.10 2.71
64 65 6.429692 TCGGAACAACAATGATGAAAGTACAT 59.570 34.615 0.00 0.00 0.00 2.29
65 66 5.760743 TCGGAACAACAATGATGAAAGTACA 59.239 36.000 0.00 0.00 0.00 2.90
66 67 6.073222 AGTCGGAACAACAATGATGAAAGTAC 60.073 38.462 0.00 0.00 0.00 2.73
159 168 0.323360 AGCATTGGCCAACGGTACAT 60.323 50.000 23.27 0.00 42.56 2.29
277 310 1.604378 CGGGTCTGAAGGCCAAGAT 59.396 57.895 5.01 0.00 0.00 2.40
296 329 2.867472 CGCCAAAGCAACTACCCG 59.133 61.111 0.00 0.00 39.83 5.28
301 334 2.280797 TCTCGCGCCAAAGCAACT 60.281 55.556 0.00 0.00 39.83 3.16
317 350 1.874466 GCAGCGACCTAAGCTCGTC 60.874 63.158 0.00 0.00 44.06 4.20
322 355 2.886124 GGACGCAGCGACCTAAGC 60.886 66.667 26.34 2.04 38.50 3.09
323 356 0.872021 GATGGACGCAGCGACCTAAG 60.872 60.000 31.53 0.00 41.68 2.18
325 358 1.391933 ATGATGGACGCAGCGACCTA 61.392 55.000 31.53 20.40 41.68 3.08
331 364 0.171903 AAGCAAATGATGGACGCAGC 59.828 50.000 0.00 0.00 0.00 5.25
350 383 3.872771 GTGAACCGTACTTTTTCCAGACA 59.127 43.478 0.00 0.00 0.00 3.41
351 384 3.060070 CGTGAACCGTACTTTTTCCAGAC 60.060 47.826 0.00 0.00 0.00 3.51
394 433 2.143925 GAAGAAGTGTTCCCTTCGTGG 58.856 52.381 0.00 0.00 44.46 4.94
408 447 1.933181 TGATAACATGCGGCGAAGAAG 59.067 47.619 12.98 0.00 0.00 2.85
409 448 2.017138 TGATAACATGCGGCGAAGAA 57.983 45.000 12.98 0.00 0.00 2.52
415 454 2.124011 CATGGTTGATAACATGCGGC 57.876 50.000 0.00 0.00 38.15 6.53
419 458 2.624838 GAGGGGCATGGTTGATAACATG 59.375 50.000 0.00 0.00 45.49 3.21
420 459 2.515429 AGAGGGGCATGGTTGATAACAT 59.485 45.455 0.00 0.00 0.00 2.71
421 460 1.922447 AGAGGGGCATGGTTGATAACA 59.078 47.619 0.00 0.00 0.00 2.41
422 461 2.736670 AGAGGGGCATGGTTGATAAC 57.263 50.000 0.00 0.00 0.00 1.89
423 462 2.852449 AGAAGAGGGGCATGGTTGATAA 59.148 45.455 0.00 0.00 0.00 1.75
436 887 1.248486 TGAGTCGTCACAGAAGAGGG 58.752 55.000 0.00 0.00 0.00 4.30
440 891 4.302455 AGAAACATGAGTCGTCACAGAAG 58.698 43.478 0.00 0.00 34.75 2.85
443 894 4.854291 GTCTAGAAACATGAGTCGTCACAG 59.146 45.833 0.00 0.00 34.75 3.66
450 901 4.560128 TGTGCTGTCTAGAAACATGAGTC 58.440 43.478 0.00 0.00 0.00 3.36
451 902 4.607293 TGTGCTGTCTAGAAACATGAGT 57.393 40.909 0.00 0.00 0.00 3.41
452 903 7.306457 CGATATTGTGCTGTCTAGAAACATGAG 60.306 40.741 0.00 0.00 0.00 2.90
455 906 5.755375 CCGATATTGTGCTGTCTAGAAACAT 59.245 40.000 0.00 0.00 0.00 2.71
464 919 1.939974 TGAGCCGATATTGTGCTGTC 58.060 50.000 9.82 0.37 34.99 3.51
465 920 2.283298 CTTGAGCCGATATTGTGCTGT 58.717 47.619 9.82 0.00 34.99 4.40
466 921 1.003116 GCTTGAGCCGATATTGTGCTG 60.003 52.381 9.82 0.05 34.99 4.41
468 923 1.016627 TGCTTGAGCCGATATTGTGC 58.983 50.000 0.00 0.00 41.18 4.57
471 926 5.696270 TGTAGTTATGCTTGAGCCGATATTG 59.304 40.000 0.00 0.00 41.18 1.90
474 929 4.098807 TGTGTAGTTATGCTTGAGCCGATA 59.901 41.667 0.00 0.00 41.18 2.92
493 948 4.415596 TGGAGGATTTAATTTGCCTGTGT 58.584 39.130 0.00 0.00 0.00 3.72
498 953 6.469782 TTGATCTGGAGGATTTAATTTGCC 57.530 37.500 0.00 0.00 34.33 4.52
510 965 2.555199 CTAAGCCGTTTGATCTGGAGG 58.445 52.381 0.00 0.00 0.00 4.30
515 970 3.535561 CATCACCTAAGCCGTTTGATCT 58.464 45.455 0.00 0.00 0.00 2.75
516 971 2.614057 CCATCACCTAAGCCGTTTGATC 59.386 50.000 0.00 0.00 0.00 2.92
521 976 0.328258 AAGCCATCACCTAAGCCGTT 59.672 50.000 0.00 0.00 0.00 4.44
522 977 0.328258 AAAGCCATCACCTAAGCCGT 59.672 50.000 0.00 0.00 0.00 5.68
527 982 3.692690 GGGTACAAAAGCCATCACCTAA 58.307 45.455 0.00 0.00 45.71 2.69
543 998 5.700373 CGTAGTAGTCCTCTAATCAGGGTAC 59.300 48.000 0.00 0.00 33.81 3.34
544 999 5.221803 CCGTAGTAGTCCTCTAATCAGGGTA 60.222 48.000 0.00 0.00 33.81 3.69
563 1018 1.757118 TGATGCTTCCTTCCTCCGTAG 59.243 52.381 0.00 0.00 0.00 3.51
564 1019 1.860641 TGATGCTTCCTTCCTCCGTA 58.139 50.000 0.00 0.00 0.00 4.02
566 1021 2.216898 GAATGATGCTTCCTTCCTCCG 58.783 52.381 6.41 0.00 0.00 4.63
567 1022 3.287867 TGAATGATGCTTCCTTCCTCC 57.712 47.619 12.84 0.00 0.00 4.30
568 1023 4.277921 GGAATGAATGATGCTTCCTTCCTC 59.722 45.833 12.84 9.95 42.24 3.71
571 1026 5.278858 GGATGGAATGAATGATGCTTCCTTC 60.279 44.000 9.71 9.71 39.45 3.46
590 1045 2.863809 CCTTTAAGAATCCGGGGATGG 58.136 52.381 0.00 0.00 34.70 3.51
607 1062 1.215423 GGTAGAATGATGGGGTGCCTT 59.785 52.381 0.00 0.00 0.00 4.35
610 1065 1.064758 TGTGGTAGAATGATGGGGTGC 60.065 52.381 0.00 0.00 0.00 5.01
618 1073 3.053768 TGCCATCCATTGTGGTAGAATGA 60.054 43.478 0.00 0.00 39.03 2.57
619 1074 3.289836 TGCCATCCATTGTGGTAGAATG 58.710 45.455 0.00 0.00 39.03 2.67
620 1075 3.668141 TGCCATCCATTGTGGTAGAAT 57.332 42.857 0.00 0.00 39.03 2.40
621 1076 3.668141 ATGCCATCCATTGTGGTAGAA 57.332 42.857 0.00 0.00 39.03 2.10
622 1077 3.668141 AATGCCATCCATTGTGGTAGA 57.332 42.857 0.00 0.00 42.44 2.59
630 1085 3.899360 CCTGTATTCCAATGCCATCCATT 59.101 43.478 0.00 0.00 44.86 3.16
631 1086 3.117016 ACCTGTATTCCAATGCCATCCAT 60.117 43.478 0.00 0.00 35.06 3.41
632 1087 2.244510 ACCTGTATTCCAATGCCATCCA 59.755 45.455 0.00 0.00 0.00 3.41
633 1088 2.887152 GACCTGTATTCCAATGCCATCC 59.113 50.000 0.00 0.00 0.00 3.51
634 1089 3.554934 TGACCTGTATTCCAATGCCATC 58.445 45.455 0.00 0.00 0.00 3.51
635 1090 3.668141 TGACCTGTATTCCAATGCCAT 57.332 42.857 0.00 0.00 0.00 4.40
636 1091 3.448093 TTGACCTGTATTCCAATGCCA 57.552 42.857 0.00 0.00 0.00 4.92
637 1092 4.799564 TTTTGACCTGTATTCCAATGCC 57.200 40.909 0.00 0.00 0.00 4.40
643 1098 8.230486 CGAGCATATTATTTTGACCTGTATTCC 58.770 37.037 0.00 0.00 0.00 3.01
651 1106 6.147328 GGTAGTCCGAGCATATTATTTTGACC 59.853 42.308 0.00 0.00 0.00 4.02
656 1111 6.169557 TGTGGTAGTCCGAGCATATTATTT 57.830 37.500 0.00 0.00 36.30 1.40
667 1122 1.831106 AGATGCATTGTGGTAGTCCGA 59.169 47.619 0.00 0.00 36.30 4.55
670 1125 2.939103 GACCAGATGCATTGTGGTAGTC 59.061 50.000 26.49 15.32 44.87 2.59
672 1127 2.292267 GGACCAGATGCATTGTGGTAG 58.708 52.381 26.49 8.32 44.87 3.18
675 1130 0.677731 ACGGACCAGATGCATTGTGG 60.678 55.000 21.75 21.75 37.38 4.17
676 1131 0.448990 CACGGACCAGATGCATTGTG 59.551 55.000 0.00 1.45 0.00 3.33
677 1132 0.324614 TCACGGACCAGATGCATTGT 59.675 50.000 0.00 0.00 0.00 2.71
678 1133 0.729116 GTCACGGACCAGATGCATTG 59.271 55.000 0.00 1.14 0.00 2.82
679 1134 0.615331 AGTCACGGACCAGATGCATT 59.385 50.000 0.00 0.00 32.18 3.56
684 1147 4.553330 ACAAAATAGTCACGGACCAGAT 57.447 40.909 0.00 0.00 32.18 2.90
692 1155 8.976715 AAAGTTTTACGTACAAAATAGTCACG 57.023 30.769 0.00 0.00 38.52 4.35
703 1166 8.396390 TGCTATGTTTCAAAAGTTTTACGTACA 58.604 29.630 0.00 4.27 0.00 2.90
704 1167 8.770850 TGCTATGTTTCAAAAGTTTTACGTAC 57.229 30.769 0.00 0.00 0.00 3.67
706 1169 8.865590 AATGCTATGTTTCAAAAGTTTTACGT 57.134 26.923 0.00 0.00 0.00 3.57
723 1189 4.025396 AGCGAGACGAATTTGAATGCTATG 60.025 41.667 0.00 0.00 0.00 2.23
725 1191 3.521560 AGCGAGACGAATTTGAATGCTA 58.478 40.909 0.00 0.00 0.00 3.49
726 1192 2.350522 AGCGAGACGAATTTGAATGCT 58.649 42.857 0.00 0.60 0.00 3.79
727 1193 2.813779 AGCGAGACGAATTTGAATGC 57.186 45.000 0.00 0.00 0.00 3.56
728 1194 8.820628 TTTATAAAGCGAGACGAATTTGAATG 57.179 30.769 0.00 0.00 0.00 2.67
753 1219 8.822855 TGTATCGCTTGATCGTTTGTATTTTAT 58.177 29.630 0.00 0.00 33.40 1.40
754 1220 8.187354 TGTATCGCTTGATCGTTTGTATTTTA 57.813 30.769 0.00 0.00 33.40 1.52
758 1224 5.234329 CCTTGTATCGCTTGATCGTTTGTAT 59.766 40.000 0.00 0.00 33.40 2.29
759 1225 4.565166 CCTTGTATCGCTTGATCGTTTGTA 59.435 41.667 0.00 0.00 33.40 2.41
761 1227 3.370978 ACCTTGTATCGCTTGATCGTTTG 59.629 43.478 0.00 0.00 33.40 2.93
764 1230 2.540515 CACCTTGTATCGCTTGATCGT 58.459 47.619 0.00 0.00 33.40 3.73
765 1231 1.860950 CCACCTTGTATCGCTTGATCG 59.139 52.381 0.00 0.00 33.40 3.69
766 1232 2.906354 ACCACCTTGTATCGCTTGATC 58.094 47.619 0.00 0.00 33.40 2.92
767 1233 4.481368 TTACCACCTTGTATCGCTTGAT 57.519 40.909 0.00 0.00 36.07 2.57
768 1234 3.965379 TTACCACCTTGTATCGCTTGA 57.035 42.857 0.00 0.00 0.00 3.02
769 1235 5.365403 TTTTTACCACCTTGTATCGCTTG 57.635 39.130 0.00 0.00 0.00 4.01
814 1283 0.035152 TTCTGCTGTTGCGATGGGAT 60.035 50.000 0.00 0.00 43.34 3.85
818 1287 1.265095 ACAGTTTCTGCTGTTGCGATG 59.735 47.619 0.00 0.00 46.45 3.84
821 1290 1.867233 AGTACAGTTTCTGCTGTTGCG 59.133 47.619 4.01 0.00 46.45 4.85
822 1291 2.603173 GCAGTACAGTTTCTGCTGTTGC 60.603 50.000 17.74 5.73 46.45 4.17
848 1317 2.463620 CCATGGATGTCGGTGTGCG 61.464 63.158 5.56 0.00 0.00 5.34
860 1329 3.583966 TCGGATTCATCATGATCCATGGA 59.416 43.478 18.88 18.88 41.66 3.41
869 1338 2.223745 TGCATGGTCGGATTCATCATG 58.776 47.619 0.00 0.00 38.46 3.07
870 1339 2.643995 TGCATGGTCGGATTCATCAT 57.356 45.000 0.00 0.00 0.00 2.45
871 1340 2.223745 CATGCATGGTCGGATTCATCA 58.776 47.619 19.40 0.00 0.00 3.07
872 1341 1.068748 GCATGCATGGTCGGATTCATC 60.069 52.381 27.34 2.90 0.00 2.92
873 1342 0.956633 GCATGCATGGTCGGATTCAT 59.043 50.000 27.34 0.00 0.00 2.57
874 1343 0.394080 TGCATGCATGGTCGGATTCA 60.394 50.000 27.34 11.60 0.00 2.57
875 1344 0.956633 ATGCATGCATGGTCGGATTC 59.043 50.000 31.74 9.08 35.03 2.52
876 1345 1.338973 GAATGCATGCATGGTCGGATT 59.661 47.619 32.79 15.98 36.68 3.01
877 1346 0.956633 GAATGCATGCATGGTCGGAT 59.043 50.000 32.79 16.02 36.68 4.18
878 1347 1.102809 GGAATGCATGCATGGTCGGA 61.103 55.000 32.79 2.83 36.68 4.55
879 1348 1.361271 GGAATGCATGCATGGTCGG 59.639 57.895 32.79 2.48 36.68 4.79
890 1359 1.545582 GTTTGCTAAGCTGGGAATGCA 59.454 47.619 0.00 0.00 0.00 3.96
891 1360 1.545582 TGTTTGCTAAGCTGGGAATGC 59.454 47.619 0.00 0.00 0.00 3.56
892 1361 3.194116 ACATGTTTGCTAAGCTGGGAATG 59.806 43.478 0.00 0.00 0.00 2.67
893 1362 3.434309 ACATGTTTGCTAAGCTGGGAAT 58.566 40.909 0.00 0.00 0.00 3.01
894 1363 2.875296 ACATGTTTGCTAAGCTGGGAA 58.125 42.857 0.00 0.00 0.00 3.97
897 1366 3.062639 CGACTACATGTTTGCTAAGCTGG 59.937 47.826 2.30 0.00 0.00 4.85
900 1369 4.921470 TTCGACTACATGTTTGCTAAGC 57.079 40.909 2.30 0.00 0.00 3.09
918 1387 7.589587 TGCAAATGTCTGTACAACTTTTATTCG 59.410 33.333 15.14 8.97 39.58 3.34
920 1389 9.195411 CATGCAAATGTCTGTACAACTTTTATT 57.805 29.630 15.14 4.83 39.58 1.40
966 1435 7.040617 CGGCGTACAACATCTATATATAGGGAT 60.041 40.741 17.81 4.63 0.00 3.85
967 1436 6.261603 CGGCGTACAACATCTATATATAGGGA 59.738 42.308 17.81 2.51 0.00 4.20
975 1444 4.603985 CTCAACGGCGTACAACATCTATA 58.396 43.478 15.20 0.00 0.00 1.31
1061 1530 2.673775 TATGAGGAGGAGCAGGAGAG 57.326 55.000 0.00 0.00 0.00 3.20
1122 1591 2.876368 GATCTGGGTGGCAAGGGACG 62.876 65.000 0.00 0.00 0.00 4.79
1162 1631 3.057019 CGTCGATGAAGGACTGTTTCAA 58.943 45.455 0.00 0.00 38.01 2.69
1164 1633 2.662156 GACGTCGATGAAGGACTGTTTC 59.338 50.000 12.58 0.00 32.24 2.78
1167 1636 0.168348 CGACGTCGATGAAGGACTGT 59.832 55.000 33.35 0.00 43.02 3.55
1193 1662 2.796651 CTCGCCATGAAGCCAAGC 59.203 61.111 0.00 0.00 0.00 4.01
1194 1663 1.748122 AGCTCGCCATGAAGCCAAG 60.748 57.895 10.04 0.58 0.00 3.61
1320 1789 4.019501 AGAGATGTGAGGTTGAAGATTGCT 60.020 41.667 0.00 0.00 0.00 3.91
1345 1814 2.501223 TACGCAAGGCTGAGGTTCCG 62.501 60.000 0.00 0.00 46.39 4.30
1380 1849 1.597742 CATAAGATGGGAGGTTGGCG 58.402 55.000 0.00 0.00 0.00 5.69
1482 1951 3.118905 AGAGTGACAAGGTTCTTGAGC 57.881 47.619 13.74 6.52 0.00 4.26
1531 2000 1.891150 CTGGAAGTTTGGCTCTTGCAT 59.109 47.619 10.58 0.00 41.03 3.96
1581 2050 0.539051 CTCCATCAAGGCGGAGTTCT 59.461 55.000 0.00 0.00 43.32 3.01
1590 2059 3.191078 GAGATGTCCACTCCATCAAGG 57.809 52.381 0.00 0.00 40.93 3.61
1744 2219 2.024414 CCCCCAATTGTTTCCGAGATC 58.976 52.381 4.43 0.00 0.00 2.75
1750 2225 0.608130 GTGAGCCCCCAATTGTTTCC 59.392 55.000 4.43 0.00 0.00 3.13
1759 2234 3.506743 TTTGCCAGTGAGCCCCCA 61.507 61.111 0.00 0.00 0.00 4.96
1760 2235 2.677875 CTTTGCCAGTGAGCCCCC 60.678 66.667 0.00 0.00 0.00 5.40
1785 2260 7.205297 TCAAGGAAGAAAATTCAGCAAAGAAG 58.795 34.615 0.00 0.00 0.00 2.85
1793 2268 9.408069 CAAGAATTCTCAAGGAAGAAAATTCAG 57.592 33.333 8.78 0.00 38.69 3.02
1848 2323 9.874205 TTCATCAGGATAATTTTTGTTGGAATC 57.126 29.630 0.00 0.00 0.00 2.52
1920 2395 3.922171 AGAGGGAAATCTGGTAAGCAG 57.078 47.619 0.00 0.00 0.00 4.24
1944 2419 8.150945 GCTAGATTTAATGTCTCCAGGTCATTA 58.849 37.037 0.00 9.02 34.35 1.90
1948 2423 5.918608 TGCTAGATTTAATGTCTCCAGGTC 58.081 41.667 0.00 0.00 0.00 3.85
1980 2455 3.780902 TGGCTGTATATCACAAGACACG 58.219 45.455 0.00 0.00 36.48 4.49
1981 2456 5.605534 AGATGGCTGTATATCACAAGACAC 58.394 41.667 0.00 0.00 36.48 3.67
1997 2472 6.059787 ACTTGAGATTTGTAAGAGATGGCT 57.940 37.500 0.00 0.00 0.00 4.75
2024 2499 5.006386 CAGTGCTTAGACCCAAATTCTTCT 58.994 41.667 0.00 0.00 0.00 2.85
2395 2872 8.100791 ACAAGAAAGGTTGCAGTACTGAATATA 58.899 33.333 27.08 0.00 0.00 0.86
2401 2878 4.900635 AACAAGAAAGGTTGCAGTACTG 57.099 40.909 18.93 18.93 0.00 2.74
2402 2879 5.193679 AGAAACAAGAAAGGTTGCAGTACT 58.806 37.500 0.00 0.00 0.00 2.73
2404 2881 5.437060 AGAGAAACAAGAAAGGTTGCAGTA 58.563 37.500 0.00 0.00 0.00 2.74
2405 2882 4.273318 AGAGAAACAAGAAAGGTTGCAGT 58.727 39.130 0.00 0.00 0.00 4.40
2521 3023 2.896685 TGCCCATTTTGGTTTCTCGAAT 59.103 40.909 0.00 0.00 35.17 3.34
2524 3026 2.609350 CATGCCCATTTTGGTTTCTCG 58.391 47.619 0.00 0.00 35.17 4.04
2578 3407 1.803334 TGTATGTTCCGTTGTGCTCC 58.197 50.000 0.00 0.00 0.00 4.70
2691 3575 9.912634 AGTATTTCCATAAATATTGCAATTCCG 57.087 29.630 18.75 0.98 39.23 4.30
2760 3646 3.940209 TGCCTGCATGAAAAAGGTTAG 57.060 42.857 0.00 0.00 33.34 2.34
2780 3669 6.986231 AGAGCGAACAAAGATTTTGGAATTTT 59.014 30.769 6.51 0.00 0.00 1.82
2812 3701 9.672086 TTTGAACTTAACATAAGTGTATGCAAC 57.328 29.630 3.70 0.00 40.83 4.17
2826 3715 7.973388 CACCAGAAAGTTGATTTGAACTTAACA 59.027 33.333 0.00 0.00 43.83 2.41
2827 3716 7.043391 GCACCAGAAAGTTGATTTGAACTTAAC 60.043 37.037 0.00 0.00 43.83 2.01
2901 3790 3.865745 CGTGAGATCATTGTGGTCTAACC 59.134 47.826 2.82 0.00 38.10 2.85
2911 3800 1.452110 TTGCACCCGTGAGATCATTG 58.548 50.000 0.00 0.00 0.00 2.82
2966 3855 6.412362 TCTATTTGAGCCAAGGTAGAGATC 57.588 41.667 0.00 0.00 0.00 2.75
2972 3861 6.247229 TGCTAATCTATTTGAGCCAAGGTA 57.753 37.500 0.00 0.00 33.87 3.08
2974 3863 4.518211 CCTGCTAATCTATTTGAGCCAAGG 59.482 45.833 0.00 0.00 33.87 3.61
2979 3868 3.879295 TGTGCCTGCTAATCTATTTGAGC 59.121 43.478 0.00 0.00 35.43 4.26
2992 3881 2.749621 GCTAAGTGTAATTGTGCCTGCT 59.250 45.455 0.00 0.00 0.00 4.24
2993 3882 2.749621 AGCTAAGTGTAATTGTGCCTGC 59.250 45.455 0.00 0.00 0.00 4.85
3043 3932 9.765795 GATAGCATGTTATAGGACAAACTTAGT 57.234 33.333 1.62 0.00 32.47 2.24
3055 3944 7.384932 TCGTCCACAATTGATAGCATGTTATAG 59.615 37.037 13.59 0.00 0.00 1.31
3058 3947 5.423886 TCGTCCACAATTGATAGCATGTTA 58.576 37.500 13.59 0.00 0.00 2.41
3093 3982 7.664731 TGACGTTAGGGAGAGAGGTTAATATAG 59.335 40.741 0.00 0.00 0.00 1.31
3192 4081 6.920569 TTTGATTATTAGAAAGGTCGAGGC 57.079 37.500 0.00 0.00 0.00 4.70
3266 4155 7.610580 TGTTATGGGAGAGGTTCAAAAATTT 57.389 32.000 0.00 0.00 0.00 1.82
3309 4198 6.100859 TGGCATATGAAGAAGAGAAGGAGATT 59.899 38.462 6.97 0.00 0.00 2.40
3368 4257 7.182060 ACTGGTATTGGTATGTTTCCTTGAAT 58.818 34.615 0.00 0.00 0.00 2.57
3410 4299 7.919690 ACTTCATTGTATGTGACGAATATTGG 58.080 34.615 0.00 0.00 0.00 3.16
3413 4302 9.773328 CAAAACTTCATTGTATGTGACGAATAT 57.227 29.630 0.00 0.00 0.00 1.28
3445 4337 6.538742 TGGAAGAGAAGTTGTTGTTTGAGTAG 59.461 38.462 0.00 0.00 0.00 2.57
3481 4373 7.434013 GTGACGTTTTGAACATACTTTCCAAAT 59.566 33.333 0.00 0.00 0.00 2.32
3517 4412 9.308000 TGACCAGTTAATTTATTCTTGGACAAT 57.692 29.630 0.00 0.00 0.00 2.71
3680 4581 8.589338 TCTAATATCTTCAGGTAGCATTCCTTC 58.411 37.037 0.00 0.00 32.37 3.46
3722 4623 9.844257 TTGGTTTCCATTCAAATCTATTGTTTT 57.156 25.926 0.00 0.00 31.53 2.43
3787 4688 4.156739 CCAACATCAAAAAGCTCTAGGTCC 59.843 45.833 0.00 0.00 0.00 4.46
3814 4715 6.234920 TGGAAAAGAACCGACAATCTGATTA 58.765 36.000 1.98 0.00 0.00 1.75
3921 4822 9.314321 AGAAGTATTTATTGATTGTACGGTCAG 57.686 33.333 1.07 0.00 0.00 3.51
4057 4973 1.036707 TTGTTTGCTGCCCTACAACC 58.963 50.000 0.00 0.00 0.00 3.77
4061 4977 1.000274 CAGGTTTGTTTGCTGCCCTAC 60.000 52.381 0.00 0.00 0.00 3.18
4069 4985 1.603326 CCATTTGGCAGGTTTGTTTGC 59.397 47.619 0.00 0.00 39.56 3.68
4081 4997 7.446625 ACAGTATCTTGATAGAATCCATTTGGC 59.553 37.037 0.00 0.00 33.20 4.52
4085 5001 8.932610 AGTGACAGTATCTTGATAGAATCCATT 58.067 33.333 0.00 0.00 33.20 3.16
4137 5053 7.286546 TGAAAGTGGTCAATATCTTGGTGAAAA 59.713 33.333 0.00 0.00 32.95 2.29
4199 5115 3.380393 TCCCAATTGACTCCGGAATAGA 58.620 45.455 5.23 0.00 0.00 1.98
4227 5143 2.497138 TGTTGAGTCCATGCAGTGAAG 58.503 47.619 0.00 0.00 0.00 3.02
4231 5147 2.224597 TGACATGTTGAGTCCATGCAGT 60.225 45.455 0.00 0.00 42.74 4.40
4243 5159 6.960992 CCGTGAAGTTATTGTATGACATGTTG 59.039 38.462 0.00 0.00 0.00 3.33
4375 5291 4.226427 TGAAAGATCCAGACATCCAAGG 57.774 45.455 0.00 0.00 0.00 3.61
4512 5428 5.354234 TCACTTGGAGAAACTGAGTTTTGAC 59.646 40.000 12.37 6.03 35.77 3.18
4652 5568 5.458069 CCCATCCTTCCATACCACAATACAT 60.458 44.000 0.00 0.00 0.00 2.29
4660 5576 2.126882 CTGACCCATCCTTCCATACCA 58.873 52.381 0.00 0.00 0.00 3.25
4661 5577 1.202818 GCTGACCCATCCTTCCATACC 60.203 57.143 0.00 0.00 0.00 2.73
4663 5579 1.891933 TGCTGACCCATCCTTCCATA 58.108 50.000 0.00 0.00 0.00 2.74
4747 5667 6.639632 AACAACACACTGCATATCTTCTTT 57.360 33.333 0.00 0.00 0.00 2.52
4748 5668 6.262944 TGAAACAACACACTGCATATCTTCTT 59.737 34.615 0.00 0.00 0.00 2.52
4749 5669 5.764686 TGAAACAACACACTGCATATCTTCT 59.235 36.000 0.00 0.00 0.00 2.85
4750 5670 6.000891 TGAAACAACACACTGCATATCTTC 57.999 37.500 0.00 0.00 0.00 2.87
4751 5671 6.389830 TTGAAACAACACACTGCATATCTT 57.610 33.333 0.00 0.00 0.00 2.40
4752 5672 6.389830 TTTGAAACAACACACTGCATATCT 57.610 33.333 0.00 0.00 0.00 1.98
4753 5673 7.462109 TTTTTGAAACAACACACTGCATATC 57.538 32.000 0.00 0.00 0.00 1.63
4821 5742 5.250200 TCATCCAACAAGTACAACCCATAC 58.750 41.667 0.00 0.00 0.00 2.39
4991 5914 4.261994 GGGCACATAAACATTCGGCATATT 60.262 41.667 0.00 0.00 0.00 1.28
5125 6057 8.770438 TTTGTTTGATAGCAGTCTTTGTTTTT 57.230 26.923 0.00 0.00 0.00 1.94
5126 6058 8.947055 ATTTGTTTGATAGCAGTCTTTGTTTT 57.053 26.923 0.00 0.00 0.00 2.43
5131 6063 9.180678 CGTTTTATTTGTTTGATAGCAGTCTTT 57.819 29.630 0.00 0.00 0.00 2.52
5132 6064 7.807907 CCGTTTTATTTGTTTGATAGCAGTCTT 59.192 33.333 0.00 0.00 0.00 3.01
5133 6065 7.305474 CCGTTTTATTTGTTTGATAGCAGTCT 58.695 34.615 0.00 0.00 0.00 3.24
5163 6095 4.260620 GCAGAGTTCAAGTCGCTAAAACAA 60.261 41.667 2.86 0.00 0.00 2.83
5219 6151 3.759086 TGTATCCCGTTGCAATTTTAGCA 59.241 39.130 0.59 0.00 40.85 3.49
5250 6182 7.398024 ACTGTACTAAATTTGAGGATGCTTCT 58.602 34.615 0.00 0.00 0.00 2.85
5304 6237 1.602327 GGGAGTTAAGAGACCGCCGT 61.602 60.000 0.00 0.00 0.00 5.68
5315 6248 0.323629 CGCCTTGGACAGGGAGTTAA 59.676 55.000 4.47 0.00 44.16 2.01
5316 6249 0.543410 TCGCCTTGGACAGGGAGTTA 60.543 55.000 4.47 0.00 44.16 2.24
5493 6431 7.047891 TCGAAGGTAAAAGCAATCATCAGTAT 58.952 34.615 0.00 0.00 0.00 2.12
5499 6437 8.831715 AATTTTTCGAAGGTAAAAGCAATCAT 57.168 26.923 0.00 0.00 0.00 2.45
5502 6440 7.601130 GGGTAATTTTTCGAAGGTAAAAGCAAT 59.399 33.333 0.00 0.00 0.00 3.56
5538 6476 1.002792 GTCAGCGGAAACTGTTGTTCC 60.003 52.381 0.00 0.00 38.84 3.62
5593 6538 4.055654 GGCGATGCCCAATCTCTC 57.944 61.111 0.00 0.00 44.06 3.20
5615 6560 6.795098 TGTGATTGTGGTAAATACACTGTC 57.205 37.500 0.00 0.00 39.52 3.51
5616 6561 7.575414 TTTGTGATTGTGGTAAATACACTGT 57.425 32.000 0.00 0.00 39.52 3.55
5617 6562 8.349245 TCTTTTGTGATTGTGGTAAATACACTG 58.651 33.333 0.00 0.00 39.52 3.66
5618 6563 8.458573 TCTTTTGTGATTGTGGTAAATACACT 57.541 30.769 0.00 0.00 39.52 3.55
5629 6574 6.047870 TGGTGGAATTTCTTTTGTGATTGTG 58.952 36.000 0.00 0.00 0.00 3.33
5653 6598 3.763897 GTCCCATGTTTGACTGCCTATTT 59.236 43.478 0.00 0.00 0.00 1.40
5661 6606 0.677288 TCGACGTCCCATGTTTGACT 59.323 50.000 10.58 0.00 0.00 3.41
5662 6607 0.788391 GTCGACGTCCCATGTTTGAC 59.212 55.000 10.58 5.12 0.00 3.18
5670 6615 3.986006 GTGCTGGTCGACGTCCCA 61.986 66.667 10.58 11.57 0.00 4.37
5673 6618 0.388649 ATCAAGTGCTGGTCGACGTC 60.389 55.000 9.92 5.18 0.00 4.34
5676 6621 1.594862 GCATATCAAGTGCTGGTCGAC 59.405 52.381 7.13 7.13 39.45 4.20
5677 6622 1.939974 GCATATCAAGTGCTGGTCGA 58.060 50.000 0.00 0.00 39.45 4.20
5684 6629 4.337555 AGACCAATTCAGCATATCAAGTGC 59.662 41.667 0.00 0.00 42.81 4.40
5702 6647 1.374947 GTGTTGCTGCCCTAGACCA 59.625 57.895 0.00 0.00 0.00 4.02
5726 6698 1.159713 TGAGGCTGTGAGTGCAAACG 61.160 55.000 0.00 0.00 0.00 3.60
5736 6708 4.701651 TGGATTTACAATTCTGAGGCTGTG 59.298 41.667 0.00 0.00 0.00 3.66
5756 6728 1.486310 CGGAAGGTGATGGAGATTGGA 59.514 52.381 0.00 0.00 0.00 3.53
5757 6729 1.210478 ACGGAAGGTGATGGAGATTGG 59.790 52.381 0.00 0.00 0.00 3.16
5758 6730 2.698855 ACGGAAGGTGATGGAGATTG 57.301 50.000 0.00 0.00 0.00 2.67
5769 6741 2.021457 CTTTGTTTCACCACGGAAGGT 58.979 47.619 0.00 0.00 44.48 3.50
5775 6747 2.936498 AGTCAGACTTTGTTTCACCACG 59.064 45.455 0.00 0.00 0.00 4.94
5789 6764 3.432378 TCCTTGAAGGGACTAGTCAGAC 58.568 50.000 23.91 13.28 38.49 3.51
5809 6784 6.086765 CGTTGAACTGCATTGTACAGATTTTC 59.913 38.462 0.00 0.00 38.55 2.29
5817 6792 2.679355 TGCGTTGAACTGCATTGTAC 57.321 45.000 9.96 0.00 35.90 2.90
5818 6793 3.066064 AGTTTGCGTTGAACTGCATTGTA 59.934 39.130 13.63 0.00 41.42 2.41
5819 6794 2.159254 AGTTTGCGTTGAACTGCATTGT 60.159 40.909 13.63 1.94 41.42 2.71
5820 6795 2.216940 CAGTTTGCGTTGAACTGCATTG 59.783 45.455 13.63 9.87 45.02 2.82
5821 6796 2.462889 CAGTTTGCGTTGAACTGCATT 58.537 42.857 13.63 3.35 45.02 3.56
5822 6797 2.124011 CAGTTTGCGTTGAACTGCAT 57.876 45.000 13.63 0.00 45.02 3.96
5823 6798 3.620615 CAGTTTGCGTTGAACTGCA 57.379 47.368 9.96 9.96 45.02 4.41
5844 6819 8.438676 AGGATGCGTATAATTATTTCTATGCC 57.561 34.615 2.68 0.00 29.69 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.