Multiple sequence alignment - TraesCS3A01G100500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G100500 chr3A 100.000 2546 0 0 1 2546 65359869 65362414 0.000000e+00 4702
1 TraesCS3A01G100500 chr3A 98.589 567 8 0 981 1547 65402273 65401707 0.000000e+00 1003
2 TraesCS3A01G100500 chr3A 92.513 187 9 3 798 984 65402502 65402321 1.940000e-66 263
3 TraesCS3A01G100500 chr3A 96.040 101 4 0 677 777 65402586 65402486 5.640000e-37 165
4 TraesCS3A01G100500 chr3D 92.916 847 35 9 982 1811 54394082 54394920 0.000000e+00 1208
5 TraesCS3A01G100500 chr3D 96.991 565 17 0 983 1547 54458147 54457583 0.000000e+00 950
6 TraesCS3A01G100500 chr3D 89.655 406 30 10 1990 2385 454744149 454744552 8.130000e-140 507
7 TraesCS3A01G100500 chr3D 92.763 304 13 4 474 777 54393569 54393863 5.030000e-117 431
8 TraesCS3A01G100500 chr3D 95.722 187 8 0 798 984 54393847 54394033 4.120000e-78 302
9 TraesCS3A01G100500 chr3D 92.784 194 7 2 798 984 54458391 54458198 8.970000e-70 274
10 TraesCS3A01G100500 chr3D 93.168 161 7 2 2385 2545 54395627 54395783 1.520000e-57 233
11 TraesCS3A01G100500 chr3D 92.701 137 9 1 1 136 54393077 54393213 2.000000e-46 196
12 TraesCS3A01G100500 chr3D 81.481 243 33 8 237 470 158362198 158361959 3.340000e-44 189
13 TraesCS3A01G100500 chr3D 85.000 180 27 0 1809 1988 54395460 54395639 1.560000e-42 183
14 TraesCS3A01G100500 chr3D 97.059 102 2 1 677 777 54458476 54458375 1.210000e-38 171
15 TraesCS3A01G100500 chr3D 78.214 280 44 10 216 482 338882795 338883070 2.030000e-36 163
16 TraesCS3A01G100500 chr3D 92.174 115 8 1 131 244 54393462 54393576 7.290000e-36 161
17 TraesCS3A01G100500 chr3B 96.534 577 20 0 983 1559 84763531 84764107 0.000000e+00 955
18 TraesCS3A01G100500 chr3B 95.130 575 19 1 982 1547 84876077 84875503 0.000000e+00 898
19 TraesCS3A01G100500 chr3B 87.661 389 37 8 2006 2387 229303814 229303430 2.320000e-120 442
20 TraesCS3A01G100500 chr3B 91.000 300 16 5 484 777 84763013 84763307 6.600000e-106 394
21 TraesCS3A01G100500 chr3B 93.583 187 12 0 798 984 84763291 84763477 1.930000e-71 279
22 TraesCS3A01G100500 chr3B 90.761 184 12 4 802 984 84876309 84876130 9.100000e-60 241
23 TraesCS3A01G100500 chr3B 94.891 137 6 1 1 136 84762408 84762544 1.980000e-51 213
24 TraesCS3A01G100500 chr3B 95.699 93 4 0 677 769 84876401 84876309 1.580000e-32 150
25 TraesCS3A01G100500 chr1A 87.745 408 36 12 1988 2385 554242273 554241870 4.960000e-127 464
26 TraesCS3A01G100500 chr1A 86.019 422 45 11 1983 2393 65808148 65807730 8.360000e-120 440
27 TraesCS3A01G100500 chr1D 87.081 418 36 13 1980 2385 442791413 442791824 8.300000e-125 457
28 TraesCS3A01G100500 chr4D 86.341 410 43 13 1991 2392 491566426 491566022 3.890000e-118 435
29 TraesCS3A01G100500 chr4D 81.590 239 29 7 244 469 319269608 319269844 1.560000e-42 183
30 TraesCS3A01G100500 chr7B 86.308 409 43 10 1988 2384 716701052 716701459 1.400000e-117 433
31 TraesCS3A01G100500 chr7B 86.308 409 42 9 1988 2384 716976166 716975760 1.400000e-117 433
32 TraesCS3A01G100500 chr7B 81.731 208 28 5 245 443 303164640 303164434 5.640000e-37 165
33 TraesCS3A01G100500 chr7B 79.583 240 34 7 242 472 717535201 717535434 9.430000e-35 158
34 TraesCS3A01G100500 chr5A 85.714 420 43 14 1989 2395 641587840 641587425 6.510000e-116 427
35 TraesCS3A01G100500 chr4B 81.328 241 31 8 244 472 396716027 396716265 1.560000e-42 183
36 TraesCS3A01G100500 chr7A 80.913 241 31 9 244 472 66718154 66718391 2.600000e-40 176
37 TraesCS3A01G100500 chr7A 80.451 133 22 4 1840 1970 130169009 130168879 5.800000e-17 99
38 TraesCS3A01G100500 chr7D 81.250 224 35 4 244 460 401822448 401822671 9.360000e-40 174
39 TraesCS3A01G100500 chr6D 80.579 242 33 7 245 473 129523598 129523358 9.360000e-40 174


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G100500 chr3A 65359869 65362414 2545 False 4702.000000 4702 100.000000 1 2546 1 chr3A.!!$F1 2545
1 TraesCS3A01G100500 chr3A 65401707 65402586 879 True 477.000000 1003 95.714000 677 1547 3 chr3A.!!$R1 870
2 TraesCS3A01G100500 chr3D 54457583 54458476 893 True 465.000000 950 95.611333 677 1547 3 chr3D.!!$R2 870
3 TraesCS3A01G100500 chr3D 54393077 54395783 2706 False 387.714286 1208 92.063429 1 2545 7 chr3D.!!$F3 2544
4 TraesCS3A01G100500 chr3B 84762408 84764107 1699 False 460.250000 955 94.002000 1 1559 4 chr3B.!!$F1 1558
5 TraesCS3A01G100500 chr3B 84875503 84876401 898 True 429.666667 898 93.863333 677 1547 3 chr3B.!!$R2 870

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
283 646 0.039346 TGCGTTGCATGAACACATGG 60.039 50.0 11.29 0.0 40.93 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1930 2945 0.744281 CAAGTTTTGCCCAACTCCGT 59.256 50.0 0.0 0.0 35.87 4.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 4.631813 ACATCACGAAAGCTTAAAGCCTAG 59.368 41.667 0.00 0.00 43.77 3.02
64 65 2.504175 ACGTACCCCACTAAGCATGAAT 59.496 45.455 0.00 0.00 0.00 2.57
80 81 7.275888 AGCATGAATTCAAACAAACAGTAGA 57.724 32.000 13.09 0.00 0.00 2.59
101 103 6.485830 AGACACATATTACATACTGCCACT 57.514 37.500 0.00 0.00 0.00 4.00
102 104 6.283694 AGACACATATTACATACTGCCACTG 58.716 40.000 0.00 0.00 0.00 3.66
177 539 5.420409 AGATCGAAGGACTATTTTGTGACC 58.580 41.667 0.00 0.00 0.00 4.02
242 605 8.057536 ACTTGTGTGAGTTAACCACAAAAATA 57.942 30.769 23.05 9.36 45.42 1.40
243 606 8.524487 ACTTGTGTGAGTTAACCACAAAAATAA 58.476 29.630 23.05 15.05 45.42 1.40
244 607 8.918961 TTGTGTGAGTTAACCACAAAAATAAG 57.081 30.769 23.05 0.00 44.91 1.73
245 608 7.484975 TGTGTGAGTTAACCACAAAAATAAGG 58.515 34.615 23.05 0.00 44.91 2.69
246 609 7.339721 TGTGTGAGTTAACCACAAAAATAAGGA 59.660 33.333 23.05 3.36 44.91 3.36
247 610 7.646526 GTGTGAGTTAACCACAAAAATAAGGAC 59.353 37.037 23.05 9.71 44.91 3.85
248 611 7.143340 GTGAGTTAACCACAAAAATAAGGACC 58.857 38.462 17.27 0.00 34.81 4.46
249 612 6.834451 TGAGTTAACCACAAAAATAAGGACCA 59.166 34.615 0.88 0.00 0.00 4.02
250 613 7.507616 TGAGTTAACCACAAAAATAAGGACCAT 59.492 33.333 0.88 0.00 0.00 3.55
251 614 7.666623 AGTTAACCACAAAAATAAGGACCATG 58.333 34.615 0.88 0.00 0.00 3.66
252 615 7.507616 AGTTAACCACAAAAATAAGGACCATGA 59.492 33.333 0.88 0.00 0.00 3.07
253 616 6.933514 AACCACAAAAATAAGGACCATGAT 57.066 33.333 0.00 0.00 0.00 2.45
254 617 9.535170 TTAACCACAAAAATAAGGACCATGATA 57.465 29.630 0.00 0.00 0.00 2.15
255 618 8.429237 AACCACAAAAATAAGGACCATGATAA 57.571 30.769 0.00 0.00 0.00 1.75
256 619 8.066612 ACCACAAAAATAAGGACCATGATAAG 57.933 34.615 0.00 0.00 0.00 1.73
257 620 7.673926 ACCACAAAAATAAGGACCATGATAAGT 59.326 33.333 0.00 0.00 0.00 2.24
258 621 7.975616 CCACAAAAATAAGGACCATGATAAGTG 59.024 37.037 0.00 0.00 0.00 3.16
259 622 7.489113 CACAAAAATAAGGACCATGATAAGTGC 59.511 37.037 0.00 0.00 0.00 4.40
260 623 6.715347 AAAATAAGGACCATGATAAGTGCC 57.285 37.500 0.00 0.00 0.00 5.01
261 624 5.387113 AATAAGGACCATGATAAGTGCCA 57.613 39.130 0.00 0.00 0.00 4.92
262 625 2.717639 AGGACCATGATAAGTGCCAC 57.282 50.000 0.00 0.00 0.00 5.01
263 626 1.915489 AGGACCATGATAAGTGCCACA 59.085 47.619 0.00 0.00 0.00 4.17
264 627 2.511218 AGGACCATGATAAGTGCCACAT 59.489 45.455 0.00 0.00 0.00 3.21
265 628 2.620115 GGACCATGATAAGTGCCACATG 59.380 50.000 0.00 0.00 39.51 3.21
266 629 2.026641 ACCATGATAAGTGCCACATGC 58.973 47.619 0.00 0.00 38.79 4.06
267 630 1.002142 CCATGATAAGTGCCACATGCG 60.002 52.381 0.00 0.00 45.60 4.73
268 631 1.672363 CATGATAAGTGCCACATGCGT 59.328 47.619 0.00 0.00 45.60 5.24
269 632 1.819928 TGATAAGTGCCACATGCGTT 58.180 45.000 0.00 0.00 45.60 4.84
270 633 1.468127 TGATAAGTGCCACATGCGTTG 59.532 47.619 0.00 0.00 45.60 4.10
271 634 0.171007 ATAAGTGCCACATGCGTTGC 59.829 50.000 0.00 0.00 45.60 4.17
272 635 1.169034 TAAGTGCCACATGCGTTGCA 61.169 50.000 0.00 0.00 45.60 4.08
282 645 3.475754 TGCGTTGCATGAACACATG 57.524 47.368 0.00 0.00 42.75 3.21
283 646 0.039346 TGCGTTGCATGAACACATGG 60.039 50.000 11.29 0.00 40.93 3.66
284 647 1.346378 GCGTTGCATGAACACATGGC 61.346 55.000 11.29 3.67 40.93 4.40
285 648 0.039346 CGTTGCATGAACACATGGCA 60.039 50.000 11.29 0.00 40.93 4.92
286 649 1.602416 CGTTGCATGAACACATGGCAA 60.602 47.619 11.29 11.83 40.93 4.52
287 650 1.794116 GTTGCATGAACACATGGCAAC 59.206 47.619 21.27 21.27 42.95 4.17
288 651 1.330234 TGCATGAACACATGGCAACT 58.670 45.000 11.29 0.00 40.93 3.16
289 652 1.270274 TGCATGAACACATGGCAACTC 59.730 47.619 11.29 0.00 40.93 3.01
290 653 1.403249 GCATGAACACATGGCAACTCC 60.403 52.381 11.29 0.00 40.93 3.85
291 654 1.135603 CATGAACACATGGCAACTCCG 60.136 52.381 0.00 0.00 38.08 4.63
292 655 0.107643 TGAACACATGGCAACTCCGA 59.892 50.000 0.00 0.00 37.80 4.55
293 656 1.234821 GAACACATGGCAACTCCGAA 58.765 50.000 0.00 0.00 37.80 4.30
294 657 0.951558 AACACATGGCAACTCCGAAC 59.048 50.000 0.00 0.00 37.80 3.95
295 658 1.227999 ACACATGGCAACTCCGAACG 61.228 55.000 0.00 0.00 37.80 3.95
296 659 1.070786 ACATGGCAACTCCGAACGT 59.929 52.632 0.00 0.00 37.80 3.99
297 660 0.534203 ACATGGCAACTCCGAACGTT 60.534 50.000 0.00 0.00 37.80 3.99
298 661 0.591170 CATGGCAACTCCGAACGTTT 59.409 50.000 0.46 0.00 37.80 3.60
299 662 1.001815 CATGGCAACTCCGAACGTTTT 60.002 47.619 0.46 0.00 37.80 2.43
300 663 1.096416 TGGCAACTCCGAACGTTTTT 58.904 45.000 0.46 0.00 37.80 1.94
337 700 3.944422 ACGCGAGTATGGCAAATTTAG 57.056 42.857 15.93 0.00 46.88 1.85
338 701 3.267483 ACGCGAGTATGGCAAATTTAGT 58.733 40.909 15.93 0.00 46.88 2.24
339 702 3.687698 ACGCGAGTATGGCAAATTTAGTT 59.312 39.130 15.93 0.00 46.88 2.24
340 703 4.028383 CGCGAGTATGGCAAATTTAGTTG 58.972 43.478 0.00 0.00 41.24 3.16
341 704 4.436852 CGCGAGTATGGCAAATTTAGTTGT 60.437 41.667 0.00 0.00 41.24 3.32
342 705 4.793216 GCGAGTATGGCAAATTTAGTTGTG 59.207 41.667 0.00 0.00 40.68 3.33
343 706 5.391523 GCGAGTATGGCAAATTTAGTTGTGA 60.392 40.000 0.00 0.00 40.68 3.58
344 707 6.607689 CGAGTATGGCAAATTTAGTTGTGAA 58.392 36.000 0.00 0.00 0.00 3.18
345 708 6.742718 CGAGTATGGCAAATTTAGTTGTGAAG 59.257 38.462 0.00 0.00 0.00 3.02
346 709 6.389906 AGTATGGCAAATTTAGTTGTGAAGC 58.610 36.000 0.00 0.00 0.00 3.86
347 710 4.662468 TGGCAAATTTAGTTGTGAAGCA 57.338 36.364 0.00 0.00 0.00 3.91
348 711 5.212532 TGGCAAATTTAGTTGTGAAGCAT 57.787 34.783 0.00 0.00 0.00 3.79
349 712 4.989797 TGGCAAATTTAGTTGTGAAGCATG 59.010 37.500 0.00 0.00 0.00 4.06
350 713 4.990426 GGCAAATTTAGTTGTGAAGCATGT 59.010 37.500 0.00 0.00 0.00 3.21
351 714 5.119125 GGCAAATTTAGTTGTGAAGCATGTC 59.881 40.000 0.00 0.00 0.00 3.06
352 715 5.691305 GCAAATTTAGTTGTGAAGCATGTCA 59.309 36.000 0.00 0.00 0.00 3.58
353 716 6.200665 GCAAATTTAGTTGTGAAGCATGTCAA 59.799 34.615 0.00 0.00 0.00 3.18
354 717 7.095523 GCAAATTTAGTTGTGAAGCATGTCAAT 60.096 33.333 0.00 0.00 0.00 2.57
355 718 8.767085 CAAATTTAGTTGTGAAGCATGTCAATT 58.233 29.630 0.00 0.00 0.00 2.32
356 719 8.891671 AATTTAGTTGTGAAGCATGTCAATTT 57.108 26.923 0.00 0.00 0.00 1.82
357 720 8.891671 ATTTAGTTGTGAAGCATGTCAATTTT 57.108 26.923 0.00 0.00 0.00 1.82
358 721 7.928908 TTAGTTGTGAAGCATGTCAATTTTC 57.071 32.000 0.00 0.00 0.00 2.29
359 722 6.152932 AGTTGTGAAGCATGTCAATTTTCT 57.847 33.333 0.00 0.00 0.00 2.52
360 723 6.576185 AGTTGTGAAGCATGTCAATTTTCTT 58.424 32.000 0.00 0.00 0.00 2.52
361 724 7.043565 AGTTGTGAAGCATGTCAATTTTCTTT 58.956 30.769 0.00 0.00 0.00 2.52
362 725 7.550196 AGTTGTGAAGCATGTCAATTTTCTTTT 59.450 29.630 0.00 0.00 0.00 2.27
363 726 7.846644 TGTGAAGCATGTCAATTTTCTTTTT 57.153 28.000 0.00 0.00 0.00 1.94
424 787 9.596677 TCGAATGGTAATTTTAGTTGTAAAACG 57.403 29.630 0.00 0.00 40.21 3.60
425 788 9.384682 CGAATGGTAATTTTAGTTGTAAAACGT 57.615 29.630 0.00 0.00 40.21 3.99
428 791 9.887406 ATGGTAATTTTAGTTGTAAAACGTCAG 57.113 29.630 0.00 0.00 40.21 3.51
429 792 9.107177 TGGTAATTTTAGTTGTAAAACGTCAGA 57.893 29.630 0.00 0.00 40.21 3.27
430 793 9.590088 GGTAATTTTAGTTGTAAAACGTCAGAG 57.410 33.333 0.00 0.00 40.21 3.35
431 794 9.099820 GTAATTTTAGTTGTAAAACGTCAGAGC 57.900 33.333 0.00 0.00 40.21 4.09
432 795 5.662211 TTTAGTTGTAAAACGTCAGAGCC 57.338 39.130 0.00 0.00 0.00 4.70
433 796 2.132762 AGTTGTAAAACGTCAGAGCCG 58.867 47.619 0.00 0.00 0.00 5.52
434 797 1.193874 GTTGTAAAACGTCAGAGCCGG 59.806 52.381 0.00 0.00 0.00 6.13
435 798 0.675083 TGTAAAACGTCAGAGCCGGA 59.325 50.000 5.05 0.00 0.00 5.14
436 799 1.274167 TGTAAAACGTCAGAGCCGGAT 59.726 47.619 5.05 0.00 0.00 4.18
437 800 2.289195 TGTAAAACGTCAGAGCCGGATT 60.289 45.455 5.05 0.00 0.00 3.01
438 801 1.156736 AAAACGTCAGAGCCGGATTG 58.843 50.000 5.05 0.00 0.00 2.67
439 802 1.298859 AAACGTCAGAGCCGGATTGC 61.299 55.000 5.05 0.00 0.00 3.56
440 803 2.172483 AACGTCAGAGCCGGATTGCT 62.172 55.000 5.05 0.00 46.37 3.91
441 804 1.448540 CGTCAGAGCCGGATTGCTT 60.449 57.895 5.05 0.00 42.95 3.91
442 805 1.424493 CGTCAGAGCCGGATTGCTTC 61.424 60.000 5.05 0.00 42.95 3.86
443 806 1.153568 TCAGAGCCGGATTGCTTCG 60.154 57.895 5.05 0.00 42.95 3.79
444 807 1.448540 CAGAGCCGGATTGCTTCGT 60.449 57.895 5.05 0.00 42.95 3.85
445 808 1.448540 AGAGCCGGATTGCTTCGTG 60.449 57.895 5.05 0.00 42.95 4.35
446 809 1.741770 GAGCCGGATTGCTTCGTGT 60.742 57.895 5.05 0.00 42.95 4.49
447 810 1.696832 GAGCCGGATTGCTTCGTGTC 61.697 60.000 5.05 0.00 42.95 3.67
448 811 2.032634 GCCGGATTGCTTCGTGTCA 61.033 57.895 5.05 0.00 0.00 3.58
449 812 1.787847 CCGGATTGCTTCGTGTCAC 59.212 57.895 0.00 0.00 0.00 3.67
450 813 0.948623 CCGGATTGCTTCGTGTCACA 60.949 55.000 0.00 0.00 0.00 3.58
451 814 0.163788 CGGATTGCTTCGTGTCACAC 59.836 55.000 0.00 0.00 0.00 3.82
464 827 3.999821 TCACACGTGTGGCAGTAAT 57.000 47.368 39.88 6.26 45.65 1.89
465 828 1.790755 TCACACGTGTGGCAGTAATC 58.209 50.000 39.88 0.00 45.65 1.75
466 829 1.069358 TCACACGTGTGGCAGTAATCA 59.931 47.619 39.88 20.41 45.65 2.57
467 830 2.076100 CACACGTGTGGCAGTAATCAT 58.924 47.619 35.65 0.33 42.10 2.45
468 831 2.483877 CACACGTGTGGCAGTAATCATT 59.516 45.455 35.65 0.00 42.10 2.57
469 832 3.058293 CACACGTGTGGCAGTAATCATTT 60.058 43.478 35.65 0.00 42.10 2.32
470 833 3.058293 ACACGTGTGGCAGTAATCATTTG 60.058 43.478 22.71 0.00 34.19 2.32
471 834 2.487762 ACGTGTGGCAGTAATCATTTGG 59.512 45.455 0.00 0.00 0.00 3.28
472 835 2.746904 CGTGTGGCAGTAATCATTTGGA 59.253 45.455 0.00 0.00 0.00 3.53
473 836 3.190327 CGTGTGGCAGTAATCATTTGGAA 59.810 43.478 0.00 0.00 0.00 3.53
474 837 4.320861 CGTGTGGCAGTAATCATTTGGAAA 60.321 41.667 0.00 0.00 0.00 3.13
475 838 5.537188 GTGTGGCAGTAATCATTTGGAAAA 58.463 37.500 0.00 0.00 0.00 2.29
476 839 5.988561 GTGTGGCAGTAATCATTTGGAAAAA 59.011 36.000 0.00 0.00 0.00 1.94
559 925 4.822036 TGTTGTTTGTTCCTTGATACCG 57.178 40.909 0.00 0.00 0.00 4.02
599 965 5.293324 CGATTTGCCTACATGCTTTGTACTA 59.707 40.000 0.00 0.00 39.87 1.82
609 981 6.958767 ACATGCTTTGTACTAAGGTCCTTAT 58.041 36.000 17.02 5.51 36.57 1.73
611 983 8.545472 ACATGCTTTGTACTAAGGTCCTTATAA 58.455 33.333 17.02 0.75 36.57 0.98
652 1024 8.827177 TGACAATAATATATCGAAACCTCCAC 57.173 34.615 0.00 0.00 0.00 4.02
653 1025 8.425703 TGACAATAATATATCGAAACCTCCACA 58.574 33.333 0.00 0.00 0.00 4.17
774 1151 4.007659 ACCAACGTAATCTCCATTGTTCC 58.992 43.478 0.00 0.00 0.00 3.62
775 1152 4.006989 CCAACGTAATCTCCATTGTTCCA 58.993 43.478 0.00 0.00 0.00 3.53
776 1153 4.457603 CCAACGTAATCTCCATTGTTCCAA 59.542 41.667 0.00 0.00 0.00 3.53
777 1154 5.125417 CCAACGTAATCTCCATTGTTCCAAT 59.875 40.000 0.00 0.00 0.00 3.16
778 1155 6.350110 CCAACGTAATCTCCATTGTTCCAATT 60.350 38.462 0.00 0.00 0.00 2.32
779 1156 6.436843 ACGTAATCTCCATTGTTCCAATTC 57.563 37.500 0.00 0.00 0.00 2.17
780 1157 5.357032 ACGTAATCTCCATTGTTCCAATTCC 59.643 40.000 0.00 0.00 0.00 3.01
781 1158 5.221048 CGTAATCTCCATTGTTCCAATTCCC 60.221 44.000 0.00 0.00 0.00 3.97
782 1159 2.722094 TCTCCATTGTTCCAATTCCCG 58.278 47.619 0.00 0.00 0.00 5.14
783 1160 1.134946 CTCCATTGTTCCAATTCCCGC 59.865 52.381 0.00 0.00 0.00 6.13
784 1161 0.894141 CCATTGTTCCAATTCCCGCA 59.106 50.000 0.00 0.00 0.00 5.69
785 1162 1.274728 CCATTGTTCCAATTCCCGCAA 59.725 47.619 0.00 0.00 0.00 4.85
786 1163 2.289320 CCATTGTTCCAATTCCCGCAAA 60.289 45.455 0.00 0.00 0.00 3.68
787 1164 3.397482 CATTGTTCCAATTCCCGCAAAA 58.603 40.909 0.00 0.00 0.00 2.44
788 1165 3.543680 TTGTTCCAATTCCCGCAAAAA 57.456 38.095 0.00 0.00 0.00 1.94
896 1280 2.646175 ATGGCCGCACGTCTACACT 61.646 57.895 0.00 0.00 0.00 3.55
953 1339 4.242475 CCTTGCCGCGTCTATATATGAAA 58.758 43.478 4.92 0.00 0.00 2.69
956 1342 2.928116 GCCGCGTCTATATATGAAACCC 59.072 50.000 4.92 0.00 0.00 4.11
1176 1635 4.228567 TGCACGCACCGGAACTCA 62.229 61.111 9.46 0.00 0.00 3.41
1185 1644 1.450312 CCGGAACTCATGGTGCCTC 60.450 63.158 0.00 0.00 41.61 4.70
1332 1791 1.606903 CCGAGAAGGCCGACTACTAT 58.393 55.000 0.00 0.00 0.00 2.12
1615 2088 8.487848 TCATAGCCCAATTTCATCATTTCAAAT 58.512 29.630 0.00 0.00 0.00 2.32
1619 2092 7.717875 AGCCCAATTTCATCATTTCAAATATGG 59.282 33.333 0.00 0.00 0.00 2.74
1633 2106 6.918892 TCAAATATGGAGTTGATAACCACG 57.081 37.500 0.00 0.00 34.85 4.94
1639 2112 3.196901 TGGAGTTGATAACCACGCATACT 59.803 43.478 0.00 0.00 0.00 2.12
1648 2121 1.487482 CCACGCATACTATGTGGTCG 58.513 55.000 13.07 4.02 46.36 4.79
1662 2135 3.937814 TGTGGTCGCTGATGATTAACTT 58.062 40.909 0.00 0.00 0.00 2.66
1668 2141 5.462398 GGTCGCTGATGATTAACTTCGTTAT 59.538 40.000 0.00 0.00 0.00 1.89
1695 2168 2.093799 CATGTGTGTACGCGCGTG 59.906 61.111 42.78 23.46 0.00 5.34
1725 2198 2.348872 CGACAAAGCTTATATGCGCCAG 60.349 50.000 4.18 0.00 38.13 4.85
1743 2216 4.043200 GCACGGCTGCTTTGGGTC 62.043 66.667 0.00 0.00 40.63 4.46
1745 2218 2.032681 ACGGCTGCTTTGGGTCTC 59.967 61.111 0.00 0.00 0.00 3.36
1746 2219 3.121030 CGGCTGCTTTGGGTCTCG 61.121 66.667 0.00 0.00 0.00 4.04
1764 2237 5.521544 GTCTCGGACCTTGTATATTCTGTC 58.478 45.833 0.00 0.00 0.00 3.51
1767 2240 6.380274 TCTCGGACCTTGTATATTCTGTCTTT 59.620 38.462 0.00 0.00 0.00 2.52
1768 2241 6.942976 TCGGACCTTGTATATTCTGTCTTTT 58.057 36.000 0.00 0.00 0.00 2.27
1769 2242 7.391620 TCGGACCTTGTATATTCTGTCTTTTT 58.608 34.615 0.00 0.00 0.00 1.94
1826 2841 8.671028 CATCATCAATCATGACAGTACAAAGAA 58.329 33.333 0.00 0.00 44.70 2.52
1827 2842 8.797350 TCATCAATCATGACAGTACAAAGAAT 57.203 30.769 0.00 0.00 38.69 2.40
1832 2847 9.926751 CAATCATGACAGTACAAAGAATATCAC 57.073 33.333 0.00 0.00 0.00 3.06
1873 2888 5.386060 TCCAGATCTGTAGACCATAACGAT 58.614 41.667 21.11 0.00 0.00 3.73
1886 2901 4.081642 ACCATAACGATGACTACAAGCACT 60.082 41.667 0.00 0.00 34.73 4.40
1890 2905 2.263077 CGATGACTACAAGCACTGGAC 58.737 52.381 0.00 0.00 0.00 4.02
1892 2907 1.419381 TGACTACAAGCACTGGACCA 58.581 50.000 0.00 0.00 0.00 4.02
1896 2911 0.250727 TACAAGCACTGGACCAAGCC 60.251 55.000 13.45 0.00 0.00 4.35
1901 2916 1.371183 CACTGGACCAAGCCGAAGA 59.629 57.895 0.00 0.00 0.00 2.87
1902 2917 0.951040 CACTGGACCAAGCCGAAGAC 60.951 60.000 0.00 0.00 0.00 3.01
1904 2919 2.342648 GGACCAAGCCGAAGACGT 59.657 61.111 0.00 0.00 37.88 4.34
1927 2942 0.179054 GCCGTTATCACCCCTTCCTC 60.179 60.000 0.00 0.00 0.00 3.71
1930 2945 0.539986 GTTATCACCCCTTCCTCGCA 59.460 55.000 0.00 0.00 0.00 5.10
1933 2948 4.760047 CACCCCTTCCTCGCACGG 62.760 72.222 0.00 0.00 0.00 4.94
1940 2955 3.234630 TTCCTCGCACGGAGTTGGG 62.235 63.158 0.00 0.00 41.61 4.12
1950 2965 0.744281 CGGAGTTGGGCAAAACTTGT 59.256 50.000 6.31 0.00 40.48 3.16
1955 2970 5.619086 CGGAGTTGGGCAAAACTTGTAATAG 60.619 44.000 6.31 0.00 40.48 1.73
1975 2990 4.897025 AGTAGACAGTCGGTAATAGCAC 57.103 45.455 0.00 0.00 0.00 4.40
1976 2991 3.631227 AGTAGACAGTCGGTAATAGCACC 59.369 47.826 0.00 0.00 35.04 5.01
1977 2992 1.755380 AGACAGTCGGTAATAGCACCC 59.245 52.381 0.00 0.00 34.90 4.61
1978 2993 1.755380 GACAGTCGGTAATAGCACCCT 59.245 52.381 0.00 0.00 34.90 4.34
1979 2994 2.954318 GACAGTCGGTAATAGCACCCTA 59.046 50.000 0.00 0.00 34.90 3.53
1980 2995 3.573110 GACAGTCGGTAATAGCACCCTAT 59.427 47.826 0.00 0.00 35.80 2.57
1981 2996 3.321111 ACAGTCGGTAATAGCACCCTATG 59.679 47.826 0.00 0.00 34.54 2.23
1982 2997 3.572682 CAGTCGGTAATAGCACCCTATGA 59.427 47.826 0.00 0.00 34.54 2.15
1983 2998 3.573110 AGTCGGTAATAGCACCCTATGAC 59.427 47.826 0.00 0.00 35.45 3.06
1984 2999 3.319972 GTCGGTAATAGCACCCTATGACA 59.680 47.826 1.75 0.00 37.20 3.58
1985 3000 3.319972 TCGGTAATAGCACCCTATGACAC 59.680 47.826 1.75 0.00 37.20 3.67
1986 3001 3.069016 CGGTAATAGCACCCTATGACACA 59.931 47.826 1.75 0.00 37.20 3.72
1987 3002 4.632153 GGTAATAGCACCCTATGACACAG 58.368 47.826 1.75 0.00 37.20 3.66
1988 3003 3.845781 AATAGCACCCTATGACACAGG 57.154 47.619 0.00 0.00 34.54 4.00
1989 3004 2.543037 TAGCACCCTATGACACAGGA 57.457 50.000 0.00 0.00 34.91 3.86
1990 3005 1.656587 AGCACCCTATGACACAGGAA 58.343 50.000 0.00 0.00 34.91 3.36
1991 3006 1.985159 AGCACCCTATGACACAGGAAA 59.015 47.619 0.00 0.00 34.91 3.13
1992 3007 2.578021 AGCACCCTATGACACAGGAAAT 59.422 45.455 0.00 0.00 34.91 2.17
1993 3008 3.780294 AGCACCCTATGACACAGGAAATA 59.220 43.478 0.00 0.00 34.91 1.40
1994 3009 3.877508 GCACCCTATGACACAGGAAATAC 59.122 47.826 0.00 0.00 34.91 1.89
1995 3010 4.119862 CACCCTATGACACAGGAAATACG 58.880 47.826 0.00 0.00 34.91 3.06
1996 3011 3.131396 CCCTATGACACAGGAAATACGC 58.869 50.000 0.00 0.00 34.91 4.42
1997 3012 3.181465 CCCTATGACACAGGAAATACGCT 60.181 47.826 0.00 0.00 34.91 5.07
1998 3013 4.442706 CCTATGACACAGGAAATACGCTT 58.557 43.478 0.00 0.00 34.91 4.68
1999 3014 4.876107 CCTATGACACAGGAAATACGCTTT 59.124 41.667 0.00 0.00 34.91 3.51
2000 3015 4.685169 ATGACACAGGAAATACGCTTTG 57.315 40.909 0.00 0.00 0.00 2.77
2001 3016 2.811431 TGACACAGGAAATACGCTTTGG 59.189 45.455 0.00 0.00 0.00 3.28
2002 3017 2.812011 GACACAGGAAATACGCTTTGGT 59.188 45.455 0.00 0.00 0.00 3.67
2003 3018 3.219281 ACACAGGAAATACGCTTTGGTT 58.781 40.909 0.00 0.00 0.00 3.67
2004 3019 3.634910 ACACAGGAAATACGCTTTGGTTT 59.365 39.130 0.00 0.00 0.00 3.27
2005 3020 4.226761 CACAGGAAATACGCTTTGGTTTC 58.773 43.478 0.00 0.00 0.00 2.78
2006 3021 4.023193 CACAGGAAATACGCTTTGGTTTCT 60.023 41.667 0.00 0.00 32.61 2.52
2007 3022 4.023193 ACAGGAAATACGCTTTGGTTTCTG 60.023 41.667 0.00 0.00 32.61 3.02
2008 3023 3.506067 AGGAAATACGCTTTGGTTTCTGG 59.494 43.478 0.00 0.00 32.61 3.86
2009 3024 3.254903 GGAAATACGCTTTGGTTTCTGGT 59.745 43.478 0.00 0.00 32.61 4.00
2010 3025 4.261867 GGAAATACGCTTTGGTTTCTGGTT 60.262 41.667 0.00 0.00 32.61 3.67
2011 3026 3.915437 ATACGCTTTGGTTTCTGGTTG 57.085 42.857 0.00 0.00 0.00 3.77
2012 3027 1.470051 ACGCTTTGGTTTCTGGTTGT 58.530 45.000 0.00 0.00 0.00 3.32
2013 3028 2.645802 ACGCTTTGGTTTCTGGTTGTA 58.354 42.857 0.00 0.00 0.00 2.41
2014 3029 3.219281 ACGCTTTGGTTTCTGGTTGTAT 58.781 40.909 0.00 0.00 0.00 2.29
2015 3030 4.391155 ACGCTTTGGTTTCTGGTTGTATA 58.609 39.130 0.00 0.00 0.00 1.47
2016 3031 5.007682 ACGCTTTGGTTTCTGGTTGTATAT 58.992 37.500 0.00 0.00 0.00 0.86
2017 3032 6.174760 ACGCTTTGGTTTCTGGTTGTATATA 58.825 36.000 0.00 0.00 0.00 0.86
2018 3033 6.093082 ACGCTTTGGTTTCTGGTTGTATATAC 59.907 38.462 5.89 5.89 0.00 1.47
2019 3034 6.092944 CGCTTTGGTTTCTGGTTGTATATACA 59.907 38.462 11.62 11.62 0.00 2.29
2020 3035 7.201696 CGCTTTGGTTTCTGGTTGTATATACAT 60.202 37.037 16.16 0.00 35.89 2.29
2021 3036 8.129211 GCTTTGGTTTCTGGTTGTATATACATC 58.871 37.037 16.16 14.64 35.89 3.06
2022 3037 8.514330 TTTGGTTTCTGGTTGTATATACATCC 57.486 34.615 26.38 26.38 43.24 3.51
2023 3038 7.446106 TGGTTTCTGGTTGTATATACATCCT 57.554 36.000 30.09 0.00 43.31 3.24
2024 3039 7.279615 TGGTTTCTGGTTGTATATACATCCTG 58.720 38.462 30.09 28.94 43.31 3.86
2025 3040 7.092623 TGGTTTCTGGTTGTATATACATCCTGT 60.093 37.037 30.09 0.00 43.31 4.00
2026 3041 8.426489 GGTTTCTGGTTGTATATACATCCTGTA 58.574 37.037 30.09 23.75 43.31 2.74
2027 3042 9.998106 GTTTCTGGTTGTATATACATCCTGTAT 57.002 33.333 30.09 5.24 44.89 2.29
2028 3043 9.996554 TTTCTGGTTGTATATACATCCTGTATG 57.003 33.333 30.09 19.52 42.93 2.39
2029 3044 8.134202 TCTGGTTGTATATACATCCTGTATGG 57.866 38.462 30.09 18.32 42.93 2.74
2030 3045 7.180229 TCTGGTTGTATATACATCCTGTATGGG 59.820 40.741 30.09 17.21 42.93 4.00
2031 3046 7.020009 TGGTTGTATATACATCCTGTATGGGA 58.980 38.462 30.09 14.19 42.93 4.37
2032 3047 7.682459 TGGTTGTATATACATCCTGTATGGGAT 59.318 37.037 30.09 0.00 42.93 3.85
2033 3048 8.548877 GGTTGTATATACATCCTGTATGGGATT 58.451 37.037 26.04 0.00 42.93 3.01
2034 3049 9.959721 GTTGTATATACATCCTGTATGGGATTT 57.040 33.333 16.16 0.00 42.93 2.17
2107 3122 8.135529 AGAATAAACTTGACTTACTTTTGCACC 58.864 33.333 0.00 0.00 0.00 5.01
2108 3123 5.652994 AAACTTGACTTACTTTTGCACCA 57.347 34.783 0.00 0.00 0.00 4.17
2109 3124 4.900635 ACTTGACTTACTTTTGCACCAG 57.099 40.909 0.00 0.00 0.00 4.00
2110 3125 4.270008 ACTTGACTTACTTTTGCACCAGT 58.730 39.130 2.60 2.60 0.00 4.00
2111 3126 5.433526 ACTTGACTTACTTTTGCACCAGTA 58.566 37.500 0.77 0.77 0.00 2.74
2112 3127 6.062095 ACTTGACTTACTTTTGCACCAGTAT 58.938 36.000 5.25 0.00 0.00 2.12
2113 3128 7.221450 ACTTGACTTACTTTTGCACCAGTATA 58.779 34.615 5.25 0.00 0.00 1.47
2114 3129 7.883311 ACTTGACTTACTTTTGCACCAGTATAT 59.117 33.333 5.25 0.00 0.00 0.86
2115 3130 9.378551 CTTGACTTACTTTTGCACCAGTATATA 57.621 33.333 5.25 0.00 0.00 0.86
2116 3131 9.727859 TTGACTTACTTTTGCACCAGTATATAA 57.272 29.630 5.25 0.00 0.00 0.98
2117 3132 9.727859 TGACTTACTTTTGCACCAGTATATAAA 57.272 29.630 5.25 0.00 0.00 1.40
2125 3140 8.903570 TTTGCACCAGTATATAAATTTTCACG 57.096 30.769 0.00 0.00 0.00 4.35
2126 3141 7.851387 TGCACCAGTATATAAATTTTCACGA 57.149 32.000 0.00 0.00 0.00 4.35
2127 3142 8.270080 TGCACCAGTATATAAATTTTCACGAA 57.730 30.769 0.00 0.00 0.00 3.85
2128 3143 8.731605 TGCACCAGTATATAAATTTTCACGAAA 58.268 29.630 0.00 0.00 0.00 3.46
2129 3144 9.562583 GCACCAGTATATAAATTTTCACGAAAA 57.437 29.630 7.37 7.37 43.48 2.29
2153 3168 6.422776 AAACCTAACATTGACTTCATAGCG 57.577 37.500 0.00 0.00 0.00 4.26
2154 3169 5.339008 ACCTAACATTGACTTCATAGCGA 57.661 39.130 0.00 0.00 0.00 4.93
2155 3170 5.730550 ACCTAACATTGACTTCATAGCGAA 58.269 37.500 0.00 0.00 0.00 4.70
2156 3171 6.170506 ACCTAACATTGACTTCATAGCGAAA 58.829 36.000 0.00 0.00 31.71 3.46
2157 3172 6.653320 ACCTAACATTGACTTCATAGCGAAAA 59.347 34.615 0.00 0.00 31.71 2.29
2158 3173 7.174253 ACCTAACATTGACTTCATAGCGAAAAA 59.826 33.333 0.00 0.00 31.71 1.94
2159 3174 7.693951 CCTAACATTGACTTCATAGCGAAAAAG 59.306 37.037 0.00 0.00 31.71 2.27
2160 3175 6.801539 ACATTGACTTCATAGCGAAAAAGA 57.198 33.333 0.00 0.00 31.71 2.52
2161 3176 6.603095 ACATTGACTTCATAGCGAAAAAGAC 58.397 36.000 0.00 0.00 31.71 3.01
2162 3177 6.204688 ACATTGACTTCATAGCGAAAAAGACA 59.795 34.615 0.00 0.00 31.71 3.41
2163 3178 6.612247 TTGACTTCATAGCGAAAAAGACAA 57.388 33.333 0.00 5.78 33.33 3.18
2164 3179 6.612247 TGACTTCATAGCGAAAAAGACAAA 57.388 33.333 0.00 0.00 31.71 2.83
2165 3180 7.022055 TGACTTCATAGCGAAAAAGACAAAA 57.978 32.000 0.00 0.00 31.71 2.44
2166 3181 7.476667 TGACTTCATAGCGAAAAAGACAAAAA 58.523 30.769 0.00 0.00 31.71 1.94
2167 3182 8.134895 TGACTTCATAGCGAAAAAGACAAAAAT 58.865 29.630 0.00 0.00 31.71 1.82
2168 3183 8.871686 ACTTCATAGCGAAAAAGACAAAAATT 57.128 26.923 0.00 0.00 31.71 1.82
2169 3184 9.959749 ACTTCATAGCGAAAAAGACAAAAATTA 57.040 25.926 0.00 0.00 31.71 1.40
2175 3190 8.141835 AGCGAAAAAGACAAAAATTATTTGCT 57.858 26.923 10.89 0.00 32.93 3.91
2176 3191 9.255304 AGCGAAAAAGACAAAAATTATTTGCTA 57.745 25.926 10.89 0.00 32.93 3.49
2205 3220 7.100458 AGGTCACTATTCACATTATTTTGGC 57.900 36.000 0.00 0.00 0.00 4.52
2206 3221 6.096846 AGGTCACTATTCACATTATTTTGGCC 59.903 38.462 0.00 0.00 0.00 5.36
2207 3222 6.127479 GGTCACTATTCACATTATTTTGGCCA 60.127 38.462 0.00 0.00 0.00 5.36
2208 3223 7.319646 GTCACTATTCACATTATTTTGGCCAA 58.680 34.615 16.05 16.05 0.00 4.52
2209 3224 7.816995 GTCACTATTCACATTATTTTGGCCAAA 59.183 33.333 27.13 27.13 0.00 3.28
2210 3225 8.370940 TCACTATTCACATTATTTTGGCCAAAA 58.629 29.630 38.39 38.39 43.48 2.44
2212 3227 9.737844 ACTATTCACATTATTTTGGCCAAAATT 57.262 25.926 44.95 32.25 45.67 1.82
2215 3230 9.694137 ATTCACATTATTTTGGCCAAAATTTTG 57.306 25.926 44.95 39.48 45.67 2.44
2216 3231 8.230472 TCACATTATTTTGGCCAAAATTTTGT 57.770 26.923 44.95 39.96 45.67 2.83
2217 3232 8.348507 TCACATTATTTTGGCCAAAATTTTGTC 58.651 29.630 44.95 15.67 45.67 3.18
2218 3233 8.351461 CACATTATTTTGGCCAAAATTTTGTCT 58.649 29.630 44.95 29.93 45.67 3.41
2219 3234 8.911965 ACATTATTTTGGCCAAAATTTTGTCTT 58.088 25.926 44.95 29.33 45.67 3.01
2220 3235 9.747293 CATTATTTTGGCCAAAATTTTGTCTTT 57.253 25.926 44.95 28.74 45.67 2.52
2243 3258 7.439108 TTTTTGAAAATAAGTCAAAGGGGGA 57.561 32.000 0.00 0.00 43.76 4.81
2244 3259 7.625498 TTTTGAAAATAAGTCAAAGGGGGAT 57.375 32.000 0.47 0.00 43.76 3.85
2245 3260 7.625498 TTTGAAAATAAGTCAAAGGGGGATT 57.375 32.000 0.00 0.00 39.46 3.01
2246 3261 7.625498 TTGAAAATAAGTCAAAGGGGGATTT 57.375 32.000 0.00 0.00 32.13 2.17
2247 3262 7.625498 TGAAAATAAGTCAAAGGGGGATTTT 57.375 32.000 0.00 0.00 0.00 1.82
2248 3263 7.676004 TGAAAATAAGTCAAAGGGGGATTTTC 58.324 34.615 9.24 9.24 40.07 2.29
2249 3264 7.512402 TGAAAATAAGTCAAAGGGGGATTTTCT 59.488 33.333 14.67 0.00 40.20 2.52
2250 3265 7.872061 AAATAAGTCAAAGGGGGATTTTCTT 57.128 32.000 0.00 0.00 0.00 2.52
2251 3266 7.872061 AATAAGTCAAAGGGGGATTTTCTTT 57.128 32.000 0.00 0.00 0.00 2.52
2252 3267 7.872061 ATAAGTCAAAGGGGGATTTTCTTTT 57.128 32.000 0.00 0.00 0.00 2.27
2253 3268 5.551305 AGTCAAAGGGGGATTTTCTTTTG 57.449 39.130 0.00 0.00 0.00 2.44
2254 3269 4.968719 AGTCAAAGGGGGATTTTCTTTTGT 59.031 37.500 0.00 0.00 0.00 2.83
2255 3270 5.056480 GTCAAAGGGGGATTTTCTTTTGTG 58.944 41.667 0.00 0.00 0.00 3.33
2256 3271 4.965532 TCAAAGGGGGATTTTCTTTTGTGA 59.034 37.500 0.00 0.00 0.00 3.58
2257 3272 5.426833 TCAAAGGGGGATTTTCTTTTGTGAA 59.573 36.000 0.00 0.00 0.00 3.18
2258 3273 5.966853 AAGGGGGATTTTCTTTTGTGAAA 57.033 34.783 0.00 0.00 34.55 2.69
2259 3274 5.966853 AGGGGGATTTTCTTTTGTGAAAA 57.033 34.783 5.14 5.14 45.93 2.29
2278 3293 9.299963 TGTGAAAATTTTCTCACAAGTACAATG 57.700 29.630 26.73 0.00 46.74 2.82
2279 3294 9.301153 GTGAAAATTTTCTCACAAGTACAATGT 57.699 29.630 26.73 0.00 41.35 2.71
2283 3298 9.965824 AAATTTTCTCACAAGTACAATGTAAGG 57.034 29.630 0.00 0.00 0.00 2.69
2284 3299 8.691661 ATTTTCTCACAAGTACAATGTAAGGT 57.308 30.769 0.00 0.00 0.00 3.50
2285 3300 7.724305 TTTCTCACAAGTACAATGTAAGGTC 57.276 36.000 0.00 0.00 0.00 3.85
2286 3301 6.413783 TCTCACAAGTACAATGTAAGGTCA 57.586 37.500 0.00 0.00 0.00 4.02
2287 3302 6.822442 TCTCACAAGTACAATGTAAGGTCAA 58.178 36.000 0.00 0.00 0.00 3.18
2288 3303 6.929049 TCTCACAAGTACAATGTAAGGTCAAG 59.071 38.462 0.00 0.00 0.00 3.02
2289 3304 6.588204 TCACAAGTACAATGTAAGGTCAAGT 58.412 36.000 0.00 0.00 0.00 3.16
2290 3305 6.704493 TCACAAGTACAATGTAAGGTCAAGTC 59.296 38.462 0.00 0.00 0.00 3.01
2291 3306 6.706270 CACAAGTACAATGTAAGGTCAAGTCT 59.294 38.462 0.00 0.00 0.00 3.24
2292 3307 7.870954 CACAAGTACAATGTAAGGTCAAGTCTA 59.129 37.037 0.00 0.00 0.00 2.59
2293 3308 8.594550 ACAAGTACAATGTAAGGTCAAGTCTAT 58.405 33.333 0.00 0.00 0.00 1.98
2294 3309 9.436957 CAAGTACAATGTAAGGTCAAGTCTATT 57.563 33.333 0.00 0.00 0.00 1.73
2296 3311 9.654663 AGTACAATGTAAGGTCAAGTCTATTTC 57.345 33.333 0.00 0.00 0.00 2.17
2297 3312 9.431887 GTACAATGTAAGGTCAAGTCTATTTCA 57.568 33.333 0.00 0.00 0.00 2.69
2298 3313 8.918202 ACAATGTAAGGTCAAGTCTATTTCAA 57.082 30.769 0.00 0.00 0.00 2.69
2299 3314 9.349713 ACAATGTAAGGTCAAGTCTATTTCAAA 57.650 29.630 0.00 0.00 0.00 2.69
2379 3394 9.490379 CTATATGTTACCATAGACCAAAAGTCC 57.510 37.037 0.00 0.00 38.13 3.85
2380 3395 6.655930 TATGTTACCATAGACCAAAAGTCCC 58.344 40.000 0.00 0.00 38.13 4.46
2381 3396 6.353255 TATGTTACCATAGACCAAAAGTCCCC 60.353 42.308 0.00 0.00 38.13 4.81
2382 3397 8.472983 TATGTTACCATAGACCAAAAGTCCCCT 61.473 40.741 0.00 0.00 38.13 4.79
2430 3445 7.985634 ACCAATTATCATGCAATTCGTTTAC 57.014 32.000 0.00 0.00 0.00 2.01
2466 3481 2.029623 GATGGCCATATGATCCCATGC 58.970 52.381 20.84 7.91 38.15 4.06
2482 3497 0.036010 ATGCCTCAACAAGTCCCTCG 60.036 55.000 0.00 0.00 0.00 4.63
2517 3532 2.422597 CGCCATGTAGAAGAACAACCA 58.577 47.619 0.00 0.00 32.02 3.67
2524 3539 1.620822 AGAAGAACAACCATGTGGGC 58.379 50.000 3.77 0.00 40.46 5.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 2.614057 ACGTAGCATGCTTCTAATTGGC 59.386 45.455 28.02 4.47 0.00 4.52
80 81 6.233905 TCAGTGGCAGTATGTAATATGTGT 57.766 37.500 0.00 0.00 39.31 3.72
101 103 5.988310 TTAGAACTCGTATCCCAGTTTCA 57.012 39.130 0.00 0.00 32.83 2.69
102 104 7.601508 TCTTTTTAGAACTCGTATCCCAGTTTC 59.398 37.037 0.00 0.00 32.83 2.78
231 594 7.673926 ACTTATCATGGTCCTTATTTTTGTGGT 59.326 33.333 0.00 0.00 0.00 4.16
242 605 2.308570 TGTGGCACTTATCATGGTCCTT 59.691 45.455 19.83 0.00 0.00 3.36
243 606 1.915489 TGTGGCACTTATCATGGTCCT 59.085 47.619 19.83 0.00 0.00 3.85
244 607 2.418368 TGTGGCACTTATCATGGTCC 57.582 50.000 19.83 0.00 0.00 4.46
245 608 2.033801 GCATGTGGCACTTATCATGGTC 59.966 50.000 19.83 0.00 43.97 4.02
246 609 2.026641 GCATGTGGCACTTATCATGGT 58.973 47.619 19.83 0.00 43.97 3.55
247 610 1.002142 CGCATGTGGCACTTATCATGG 60.002 52.381 19.83 4.52 45.17 3.66
248 611 1.672363 ACGCATGTGGCACTTATCATG 59.328 47.619 19.83 14.19 45.17 3.07
249 612 2.042686 ACGCATGTGGCACTTATCAT 57.957 45.000 19.83 0.00 45.17 2.45
250 613 1.468127 CAACGCATGTGGCACTTATCA 59.532 47.619 19.83 0.00 45.17 2.15
251 614 1.795162 GCAACGCATGTGGCACTTATC 60.795 52.381 19.83 6.99 44.95 1.75
252 615 0.171007 GCAACGCATGTGGCACTTAT 59.829 50.000 19.83 1.41 44.95 1.73
253 616 1.578926 GCAACGCATGTGGCACTTA 59.421 52.632 19.83 0.00 44.95 2.24
254 617 2.336088 GCAACGCATGTGGCACTT 59.664 55.556 19.83 9.98 44.95 3.16
266 629 3.732956 GTTGCCATGTGTTCATGCAACG 61.733 50.000 20.30 0.00 45.84 4.10
267 630 1.794116 GTTGCCATGTGTTCATGCAAC 59.206 47.619 20.30 20.30 46.87 4.17
272 635 1.167851 CGGAGTTGCCATGTGTTCAT 58.832 50.000 0.00 0.00 35.94 2.57
273 636 0.107643 TCGGAGTTGCCATGTGTTCA 59.892 50.000 0.00 0.00 35.94 3.18
274 637 1.069227 GTTCGGAGTTGCCATGTGTTC 60.069 52.381 0.00 0.00 35.94 3.18
275 638 0.951558 GTTCGGAGTTGCCATGTGTT 59.048 50.000 0.00 0.00 35.94 3.32
276 639 1.227999 CGTTCGGAGTTGCCATGTGT 61.228 55.000 0.00 0.00 35.94 3.72
277 640 1.227999 ACGTTCGGAGTTGCCATGTG 61.228 55.000 0.00 0.00 35.94 3.21
278 641 0.534203 AACGTTCGGAGTTGCCATGT 60.534 50.000 0.00 0.00 35.94 3.21
279 642 0.591170 AAACGTTCGGAGTTGCCATG 59.409 50.000 0.00 0.00 35.94 3.66
280 643 1.314730 AAAACGTTCGGAGTTGCCAT 58.685 45.000 0.00 0.00 35.94 4.40
281 644 1.096416 AAAAACGTTCGGAGTTGCCA 58.904 45.000 0.00 0.00 35.94 4.92
282 645 3.930400 AAAAACGTTCGGAGTTGCC 57.070 47.368 0.00 0.00 31.43 4.52
297 660 7.353497 TCGCGTCAATAAACTTGACATAAAAA 58.647 30.769 5.77 0.00 46.70 1.94
298 661 6.889494 TCGCGTCAATAAACTTGACATAAAA 58.111 32.000 5.77 0.00 46.70 1.52
299 662 6.146510 ACTCGCGTCAATAAACTTGACATAAA 59.853 34.615 5.77 1.05 46.70 1.40
300 663 5.636121 ACTCGCGTCAATAAACTTGACATAA 59.364 36.000 5.77 2.45 46.70 1.90
301 664 5.165676 ACTCGCGTCAATAAACTTGACATA 58.834 37.500 5.77 2.71 46.70 2.29
302 665 3.994392 ACTCGCGTCAATAAACTTGACAT 59.006 39.130 5.77 0.00 46.70 3.06
303 666 3.386486 ACTCGCGTCAATAAACTTGACA 58.614 40.909 5.77 0.00 46.70 3.58
304 667 5.481472 CATACTCGCGTCAATAAACTTGAC 58.519 41.667 5.77 7.81 43.85 3.18
305 668 4.565166 CCATACTCGCGTCAATAAACTTGA 59.435 41.667 5.77 0.00 0.00 3.02
306 669 4.782195 GCCATACTCGCGTCAATAAACTTG 60.782 45.833 5.77 0.00 0.00 3.16
307 670 3.308866 GCCATACTCGCGTCAATAAACTT 59.691 43.478 5.77 0.00 0.00 2.66
308 671 2.864343 GCCATACTCGCGTCAATAAACT 59.136 45.455 5.77 0.00 0.00 2.66
309 672 2.605818 TGCCATACTCGCGTCAATAAAC 59.394 45.455 5.77 0.00 0.00 2.01
310 673 2.894902 TGCCATACTCGCGTCAATAAA 58.105 42.857 5.77 0.00 0.00 1.40
311 674 2.588027 TGCCATACTCGCGTCAATAA 57.412 45.000 5.77 0.00 0.00 1.40
312 675 2.588027 TTGCCATACTCGCGTCAATA 57.412 45.000 5.77 0.00 0.00 1.90
313 676 1.732941 TTTGCCATACTCGCGTCAAT 58.267 45.000 5.77 0.00 0.00 2.57
314 677 1.732941 ATTTGCCATACTCGCGTCAA 58.267 45.000 5.77 0.00 0.00 3.18
315 678 1.732941 AATTTGCCATACTCGCGTCA 58.267 45.000 5.77 0.00 0.00 4.35
316 679 2.825086 AAATTTGCCATACTCGCGTC 57.175 45.000 5.77 0.00 0.00 5.19
317 680 3.267483 ACTAAATTTGCCATACTCGCGT 58.733 40.909 5.77 0.00 0.00 6.01
318 681 3.944422 ACTAAATTTGCCATACTCGCG 57.056 42.857 0.00 0.00 0.00 5.87
319 682 4.793216 CACAACTAAATTTGCCATACTCGC 59.207 41.667 0.00 0.00 0.00 5.03
320 683 6.176975 TCACAACTAAATTTGCCATACTCG 57.823 37.500 0.00 0.00 0.00 4.18
321 684 6.528072 GCTTCACAACTAAATTTGCCATACTC 59.472 38.462 0.00 0.00 0.00 2.59
322 685 6.015519 TGCTTCACAACTAAATTTGCCATACT 60.016 34.615 0.00 0.00 0.00 2.12
323 686 6.155827 TGCTTCACAACTAAATTTGCCATAC 58.844 36.000 0.00 0.00 0.00 2.39
324 687 6.338214 TGCTTCACAACTAAATTTGCCATA 57.662 33.333 0.00 0.00 0.00 2.74
325 688 5.212532 TGCTTCACAACTAAATTTGCCAT 57.787 34.783 0.00 0.00 0.00 4.40
326 689 4.662468 TGCTTCACAACTAAATTTGCCA 57.338 36.364 0.00 0.00 0.00 4.92
327 690 4.990426 ACATGCTTCACAACTAAATTTGCC 59.010 37.500 0.00 0.00 0.00 4.52
328 691 5.691305 TGACATGCTTCACAACTAAATTTGC 59.309 36.000 0.00 0.00 0.00 3.68
329 692 7.697352 TTGACATGCTTCACAACTAAATTTG 57.303 32.000 0.00 0.00 0.00 2.32
330 693 8.891671 AATTGACATGCTTCACAACTAAATTT 57.108 26.923 0.00 0.00 0.00 1.82
331 694 8.891671 AAATTGACATGCTTCACAACTAAATT 57.108 26.923 0.00 0.00 0.00 1.82
332 695 8.891671 AAAATTGACATGCTTCACAACTAAAT 57.108 26.923 0.00 0.00 0.00 1.40
333 696 8.196771 AGAAAATTGACATGCTTCACAACTAAA 58.803 29.630 0.00 0.00 0.00 1.85
334 697 7.715657 AGAAAATTGACATGCTTCACAACTAA 58.284 30.769 0.00 0.00 0.00 2.24
335 698 7.275888 AGAAAATTGACATGCTTCACAACTA 57.724 32.000 0.00 0.00 0.00 2.24
336 699 6.152932 AGAAAATTGACATGCTTCACAACT 57.847 33.333 0.00 0.00 0.00 3.16
337 700 6.833342 AAGAAAATTGACATGCTTCACAAC 57.167 33.333 0.00 0.00 0.00 3.32
338 701 7.846644 AAAAGAAAATTGACATGCTTCACAA 57.153 28.000 0.00 0.00 0.00 3.33
339 702 7.846644 AAAAAGAAAATTGACATGCTTCACA 57.153 28.000 0.00 0.00 0.00 3.58
361 724 7.793927 AAAAACTGAAACTTGTCACCAAAAA 57.206 28.000 0.00 0.00 0.00 1.94
398 761 9.596677 CGTTTTACAACTAAAATTACCATTCGA 57.403 29.630 0.00 0.00 34.93 3.71
399 762 9.384682 ACGTTTTACAACTAAAATTACCATTCG 57.615 29.630 0.00 0.00 34.93 3.34
402 765 9.887406 CTGACGTTTTACAACTAAAATTACCAT 57.113 29.630 0.00 0.00 34.93 3.55
403 766 9.107177 TCTGACGTTTTACAACTAAAATTACCA 57.893 29.630 0.00 0.00 34.93 3.25
404 767 9.590088 CTCTGACGTTTTACAACTAAAATTACC 57.410 33.333 0.00 0.00 34.93 2.85
405 768 9.099820 GCTCTGACGTTTTACAACTAAAATTAC 57.900 33.333 0.00 0.00 34.93 1.89
406 769 8.284693 GGCTCTGACGTTTTACAACTAAAATTA 58.715 33.333 0.00 0.00 34.93 1.40
407 770 7.136772 GGCTCTGACGTTTTACAACTAAAATT 58.863 34.615 0.00 0.00 34.93 1.82
408 771 6.565247 CGGCTCTGACGTTTTACAACTAAAAT 60.565 38.462 0.00 0.00 34.93 1.82
409 772 5.276963 CGGCTCTGACGTTTTACAACTAAAA 60.277 40.000 0.00 0.00 30.72 1.52
410 773 4.209703 CGGCTCTGACGTTTTACAACTAAA 59.790 41.667 0.00 0.00 0.00 1.85
411 774 3.737266 CGGCTCTGACGTTTTACAACTAA 59.263 43.478 0.00 0.00 0.00 2.24
412 775 3.311106 CGGCTCTGACGTTTTACAACTA 58.689 45.455 0.00 0.00 0.00 2.24
413 776 2.132762 CGGCTCTGACGTTTTACAACT 58.867 47.619 0.00 0.00 0.00 3.16
414 777 1.193874 CCGGCTCTGACGTTTTACAAC 59.806 52.381 0.00 0.00 28.54 3.32
415 778 1.068895 TCCGGCTCTGACGTTTTACAA 59.931 47.619 0.00 0.00 28.54 2.41
416 779 0.675083 TCCGGCTCTGACGTTTTACA 59.325 50.000 0.00 0.00 28.54 2.41
417 780 2.005971 ATCCGGCTCTGACGTTTTAC 57.994 50.000 0.00 0.00 28.54 2.01
418 781 2.343101 CAATCCGGCTCTGACGTTTTA 58.657 47.619 0.00 0.00 28.54 1.52
419 782 1.156736 CAATCCGGCTCTGACGTTTT 58.843 50.000 0.00 0.00 28.54 2.43
420 783 1.298859 GCAATCCGGCTCTGACGTTT 61.299 55.000 0.00 0.00 28.54 3.60
421 784 1.741770 GCAATCCGGCTCTGACGTT 60.742 57.895 0.00 0.00 28.54 3.99
422 785 2.125512 GCAATCCGGCTCTGACGT 60.126 61.111 0.00 0.00 28.54 4.34
423 786 1.424493 GAAGCAATCCGGCTCTGACG 61.424 60.000 0.00 0.00 45.07 4.35
424 787 1.424493 CGAAGCAATCCGGCTCTGAC 61.424 60.000 0.00 0.00 45.07 3.51
425 788 1.153568 CGAAGCAATCCGGCTCTGA 60.154 57.895 0.00 0.00 45.07 3.27
426 789 1.448540 ACGAAGCAATCCGGCTCTG 60.449 57.895 0.00 0.00 45.07 3.35
427 790 1.448540 CACGAAGCAATCCGGCTCT 60.449 57.895 0.00 0.00 45.07 4.09
428 791 1.696832 GACACGAAGCAATCCGGCTC 61.697 60.000 0.00 0.00 45.07 4.70
430 793 2.032634 TGACACGAAGCAATCCGGC 61.033 57.895 0.00 0.00 0.00 6.13
431 794 0.948623 TGTGACACGAAGCAATCCGG 60.949 55.000 0.00 0.00 0.00 5.14
432 795 0.163788 GTGTGACACGAAGCAATCCG 59.836 55.000 0.00 0.00 0.00 4.18
447 810 1.507562 TGATTACTGCCACACGTGTG 58.492 50.000 36.13 36.13 45.23 3.82
448 811 2.472695 ATGATTACTGCCACACGTGT 57.527 45.000 17.22 17.22 0.00 4.49
449 812 3.491356 CAAATGATTACTGCCACACGTG 58.509 45.455 15.48 15.48 0.00 4.49
450 813 2.487762 CCAAATGATTACTGCCACACGT 59.512 45.455 0.00 0.00 0.00 4.49
451 814 2.746904 TCCAAATGATTACTGCCACACG 59.253 45.455 0.00 0.00 0.00 4.49
452 815 4.782019 TTCCAAATGATTACTGCCACAC 57.218 40.909 0.00 0.00 0.00 3.82
453 816 5.798125 TTTTCCAAATGATTACTGCCACA 57.202 34.783 0.00 0.00 0.00 4.17
474 837 9.588096 ACCAGAAACTCATAGAAGGTTTATTTT 57.412 29.630 0.00 0.00 34.00 1.82
475 838 9.014297 CACCAGAAACTCATAGAAGGTTTATTT 57.986 33.333 0.00 0.00 34.00 1.40
476 839 7.611855 CCACCAGAAACTCATAGAAGGTTTATT 59.388 37.037 0.00 0.00 34.00 1.40
477 840 7.112779 CCACCAGAAACTCATAGAAGGTTTAT 58.887 38.462 0.00 0.00 34.00 1.40
478 841 6.472887 CCACCAGAAACTCATAGAAGGTTTA 58.527 40.000 0.00 0.00 34.00 2.01
559 925 0.392998 ATCGAACACCATGGAGGCAC 60.393 55.000 21.47 5.64 43.14 5.01
626 998 9.268268 GTGGAGGTTTCGATATATTATTGTCAA 57.732 33.333 0.00 0.00 0.00 3.18
627 999 8.425703 TGTGGAGGTTTCGATATATTATTGTCA 58.574 33.333 0.00 0.00 0.00 3.58
628 1000 8.827177 TGTGGAGGTTTCGATATATTATTGTC 57.173 34.615 0.00 0.00 0.00 3.18
629 1001 8.647796 TCTGTGGAGGTTTCGATATATTATTGT 58.352 33.333 0.00 0.00 0.00 2.71
630 1002 9.489084 TTCTGTGGAGGTTTCGATATATTATTG 57.511 33.333 0.00 0.00 0.00 1.90
646 1018 4.580167 TGATCACTTTGTTTTCTGTGGAGG 59.420 41.667 0.00 0.00 0.00 4.30
652 1024 4.614284 GCGTGATGATCACTTTGTTTTCTG 59.386 41.667 21.83 4.96 44.85 3.02
653 1025 4.275689 TGCGTGATGATCACTTTGTTTTCT 59.724 37.500 21.83 0.00 44.85 2.52
806 1183 2.367241 TCAGATTGTCGGTCTTGGAACA 59.633 45.455 0.00 0.00 0.00 3.18
807 1184 2.996621 CTCAGATTGTCGGTCTTGGAAC 59.003 50.000 0.00 0.00 0.00 3.62
808 1185 2.897326 TCTCAGATTGTCGGTCTTGGAA 59.103 45.455 0.00 0.00 0.00 3.53
809 1186 2.493675 CTCTCAGATTGTCGGTCTTGGA 59.506 50.000 0.00 0.00 0.00 3.53
810 1187 2.493675 TCTCTCAGATTGTCGGTCTTGG 59.506 50.000 0.00 0.00 0.00 3.61
896 1280 6.458784 AGGGGTCAGGGAGAGTATTAAAATA 58.541 40.000 0.00 0.00 0.00 1.40
1596 2069 9.826574 ACTCCATATTTGAAATGATGAAATTGG 57.173 29.630 0.00 0.00 0.00 3.16
1615 2088 3.897141 TGCGTGGTTATCAACTCCATA 57.103 42.857 0.00 0.00 33.68 2.74
1619 2092 5.983720 ACATAGTATGCGTGGTTATCAACTC 59.016 40.000 10.16 0.00 0.00 3.01
1633 2106 2.509052 TCAGCGACCACATAGTATGC 57.491 50.000 10.16 0.00 0.00 3.14
1639 2112 5.276461 AGTTAATCATCAGCGACCACATA 57.724 39.130 0.00 0.00 0.00 2.29
1662 2135 5.211454 CACACATGCACTTCAAAATAACGA 58.789 37.500 0.00 0.00 0.00 3.85
1668 2141 3.790456 GCGTACACACATGCACTTCAAAA 60.790 43.478 0.00 0.00 0.00 2.44
1706 2179 1.949525 CCTGGCGCATATAAGCTTTGT 59.050 47.619 10.83 0.00 0.00 2.83
1728 2201 2.032681 GAGACCCAAAGCAGCCGT 59.967 61.111 0.00 0.00 0.00 5.68
1743 2216 5.776173 AGACAGAATATACAAGGTCCGAG 57.224 43.478 0.00 0.00 0.00 4.63
1745 2218 7.611213 AAAAAGACAGAATATACAAGGTCCG 57.389 36.000 0.00 0.00 0.00 4.79
1791 2264 9.444600 CTGTCATGATTGATGATGGATACAATA 57.555 33.333 0.00 0.00 43.20 1.90
1792 2265 7.942894 ACTGTCATGATTGATGATGGATACAAT 59.057 33.333 0.00 0.00 43.20 2.71
1793 2266 7.284820 ACTGTCATGATTGATGATGGATACAA 58.715 34.615 0.00 0.00 43.20 2.41
1799 2272 6.930667 TTGTACTGTCATGATTGATGATGG 57.069 37.500 0.00 0.00 43.20 3.51
1845 2860 8.957466 CGTTATGGTCTACAGATCTGGATATAA 58.043 37.037 26.08 17.38 34.19 0.98
1848 2863 6.540083 TCGTTATGGTCTACAGATCTGGATA 58.460 40.000 26.08 8.40 34.19 2.59
1851 2866 5.241728 TCATCGTTATGGTCTACAGATCTGG 59.758 44.000 26.08 9.99 33.61 3.86
1858 2873 6.679638 GCTTGTAGTCATCGTTATGGTCTACA 60.680 42.308 14.20 14.20 42.23 2.74
1870 2885 2.263077 GTCCAGTGCTTGTAGTCATCG 58.737 52.381 0.00 0.00 0.00 3.84
1873 2888 1.419381 TGGTCCAGTGCTTGTAGTCA 58.581 50.000 0.00 0.00 0.00 3.41
1886 2901 2.342279 CGTCTTCGGCTTGGTCCA 59.658 61.111 0.00 0.00 0.00 4.02
1890 2905 2.372690 CGACACGTCTTCGGCTTGG 61.373 63.158 8.00 0.00 41.85 3.61
1892 2907 2.733593 GCGACACGTCTTCGGCTT 60.734 61.111 15.82 0.00 41.85 4.35
1902 2917 2.162754 GGGTGATAACGGCGACACG 61.163 63.158 16.62 0.00 40.31 4.49
1904 2919 1.546589 AAGGGGTGATAACGGCGACA 61.547 55.000 16.62 5.28 0.00 4.35
1927 2942 2.840066 TTTTGCCCAACTCCGTGCG 61.840 57.895 0.00 0.00 0.00 5.34
1930 2945 0.744281 CAAGTTTTGCCCAACTCCGT 59.256 50.000 0.00 0.00 35.87 4.69
1933 2948 6.327279 ACTATTACAAGTTTTGCCCAACTC 57.673 37.500 0.00 0.00 35.87 3.01
1936 2951 6.999272 TGTCTACTATTACAAGTTTTGCCCAA 59.001 34.615 0.00 0.00 0.00 4.12
1940 2955 7.411588 CCGACTGTCTACTATTACAAGTTTTGC 60.412 40.741 6.21 0.00 0.00 3.68
1950 2965 7.173907 GGTGCTATTACCGACTGTCTACTATTA 59.826 40.741 6.21 0.00 0.00 0.98
1955 2970 3.243334 GGGTGCTATTACCGACTGTCTAC 60.243 52.174 6.21 0.00 41.79 2.59
1975 2990 3.131396 GCGTATTTCCTGTGTCATAGGG 58.869 50.000 15.07 0.03 35.96 3.53
1976 2991 4.060038 AGCGTATTTCCTGTGTCATAGG 57.940 45.455 9.32 9.32 36.63 2.57
1977 2992 5.220662 CCAAAGCGTATTTCCTGTGTCATAG 60.221 44.000 0.00 0.00 0.00 2.23
1978 2993 4.634004 CCAAAGCGTATTTCCTGTGTCATA 59.366 41.667 0.00 0.00 0.00 2.15
1979 2994 3.440173 CCAAAGCGTATTTCCTGTGTCAT 59.560 43.478 0.00 0.00 0.00 3.06
1980 2995 2.811431 CCAAAGCGTATTTCCTGTGTCA 59.189 45.455 0.00 0.00 0.00 3.58
1981 2996 2.812011 ACCAAAGCGTATTTCCTGTGTC 59.188 45.455 0.00 0.00 0.00 3.67
1982 2997 2.858745 ACCAAAGCGTATTTCCTGTGT 58.141 42.857 0.00 0.00 0.00 3.72
1983 2998 3.915437 AACCAAAGCGTATTTCCTGTG 57.085 42.857 0.00 0.00 0.00 3.66
1984 2999 4.023193 CAGAAACCAAAGCGTATTTCCTGT 60.023 41.667 0.00 0.00 32.56 4.00
1985 3000 4.475944 CAGAAACCAAAGCGTATTTCCTG 58.524 43.478 0.00 0.00 32.56 3.86
1986 3001 3.506067 CCAGAAACCAAAGCGTATTTCCT 59.494 43.478 0.00 0.00 32.56 3.36
1987 3002 3.254903 ACCAGAAACCAAAGCGTATTTCC 59.745 43.478 0.00 0.00 32.56 3.13
1988 3003 4.499037 ACCAGAAACCAAAGCGTATTTC 57.501 40.909 0.00 0.00 0.00 2.17
1989 3004 4.098807 ACAACCAGAAACCAAAGCGTATTT 59.901 37.500 0.00 0.00 0.00 1.40
1990 3005 3.634910 ACAACCAGAAACCAAAGCGTATT 59.365 39.130 0.00 0.00 0.00 1.89
1991 3006 3.219281 ACAACCAGAAACCAAAGCGTAT 58.781 40.909 0.00 0.00 0.00 3.06
1992 3007 2.645802 ACAACCAGAAACCAAAGCGTA 58.354 42.857 0.00 0.00 0.00 4.42
1993 3008 1.470051 ACAACCAGAAACCAAAGCGT 58.530 45.000 0.00 0.00 0.00 5.07
1994 3009 3.915437 ATACAACCAGAAACCAAAGCG 57.085 42.857 0.00 0.00 0.00 4.68
1995 3010 7.385778 TGTATATACAACCAGAAACCAAAGC 57.614 36.000 13.24 0.00 32.40 3.51
1996 3011 8.621286 GGATGTATATACAACCAGAAACCAAAG 58.379 37.037 28.27 0.00 45.34 2.77
1997 3012 8.514330 GGATGTATATACAACCAGAAACCAAA 57.486 34.615 28.27 0.73 45.34 3.28
2081 3096 8.135529 GGTGCAAAAGTAAGTCAAGTTTATTCT 58.864 33.333 0.00 0.00 0.00 2.40
2082 3097 7.918562 TGGTGCAAAAGTAAGTCAAGTTTATTC 59.081 33.333 0.00 0.00 0.00 1.75
2083 3098 7.777095 TGGTGCAAAAGTAAGTCAAGTTTATT 58.223 30.769 0.00 0.00 0.00 1.40
2084 3099 7.068226 ACTGGTGCAAAAGTAAGTCAAGTTTAT 59.932 33.333 0.75 0.00 0.00 1.40
2085 3100 6.376018 ACTGGTGCAAAAGTAAGTCAAGTTTA 59.624 34.615 0.75 0.00 0.00 2.01
2086 3101 5.185056 ACTGGTGCAAAAGTAAGTCAAGTTT 59.815 36.000 0.75 0.00 0.00 2.66
2087 3102 4.705023 ACTGGTGCAAAAGTAAGTCAAGTT 59.295 37.500 0.75 0.00 0.00 2.66
2088 3103 4.270008 ACTGGTGCAAAAGTAAGTCAAGT 58.730 39.130 0.75 0.00 0.00 3.16
2089 3104 4.900635 ACTGGTGCAAAAGTAAGTCAAG 57.099 40.909 0.75 0.00 0.00 3.02
2090 3105 9.727859 TTATATACTGGTGCAAAAGTAAGTCAA 57.272 29.630 12.39 4.27 32.84 3.18
2091 3106 9.727859 TTTATATACTGGTGCAAAAGTAAGTCA 57.272 29.630 12.39 1.92 32.84 3.41
2099 3114 9.347934 CGTGAAAATTTATATACTGGTGCAAAA 57.652 29.630 0.00 0.00 0.00 2.44
2100 3115 8.731605 TCGTGAAAATTTATATACTGGTGCAAA 58.268 29.630 0.00 0.00 0.00 3.68
2101 3116 8.270080 TCGTGAAAATTTATATACTGGTGCAA 57.730 30.769 0.00 0.00 0.00 4.08
2102 3117 7.851387 TCGTGAAAATTTATATACTGGTGCA 57.149 32.000 0.00 0.00 0.00 4.57
2103 3118 9.562583 TTTTCGTGAAAATTTATATACTGGTGC 57.437 29.630 3.74 0.00 35.57 5.01
2128 3143 7.174253 TCGCTATGAAGTCAATGTTAGGTTTTT 59.826 33.333 0.00 0.00 0.00 1.94
2129 3144 6.653320 TCGCTATGAAGTCAATGTTAGGTTTT 59.347 34.615 0.00 0.00 0.00 2.43
2130 3145 6.170506 TCGCTATGAAGTCAATGTTAGGTTT 58.829 36.000 0.00 0.00 0.00 3.27
2131 3146 5.730550 TCGCTATGAAGTCAATGTTAGGTT 58.269 37.500 0.00 0.00 0.00 3.50
2132 3147 5.339008 TCGCTATGAAGTCAATGTTAGGT 57.661 39.130 0.00 0.00 0.00 3.08
2133 3148 6.662414 TTTCGCTATGAAGTCAATGTTAGG 57.338 37.500 0.00 0.00 37.99 2.69
2134 3149 8.443160 TCTTTTTCGCTATGAAGTCAATGTTAG 58.557 33.333 0.00 0.00 37.99 2.34
2135 3150 8.227791 GTCTTTTTCGCTATGAAGTCAATGTTA 58.772 33.333 0.00 0.00 37.99 2.41
2136 3151 7.078228 GTCTTTTTCGCTATGAAGTCAATGTT 58.922 34.615 0.00 0.00 37.99 2.71
2137 3152 6.204688 TGTCTTTTTCGCTATGAAGTCAATGT 59.795 34.615 0.00 0.00 37.99 2.71
2138 3153 6.602179 TGTCTTTTTCGCTATGAAGTCAATG 58.398 36.000 0.00 0.00 37.99 2.82
2139 3154 6.801539 TGTCTTTTTCGCTATGAAGTCAAT 57.198 33.333 0.00 0.00 37.99 2.57
2140 3155 6.612247 TTGTCTTTTTCGCTATGAAGTCAA 57.388 33.333 0.00 0.00 37.99 3.18
2141 3156 6.612247 TTTGTCTTTTTCGCTATGAAGTCA 57.388 33.333 0.00 0.00 37.99 3.41
2142 3157 7.908193 TTTTTGTCTTTTTCGCTATGAAGTC 57.092 32.000 0.00 0.00 37.99 3.01
2143 3158 8.871686 AATTTTTGTCTTTTTCGCTATGAAGT 57.128 26.923 0.00 0.00 37.99 3.01
2149 3164 9.255304 AGCAAATAATTTTTGTCTTTTTCGCTA 57.745 25.926 11.90 0.00 0.00 4.26
2150 3165 8.141835 AGCAAATAATTTTTGTCTTTTTCGCT 57.858 26.923 11.90 0.00 0.00 4.93
2179 3194 8.850156 GCCAAAATAATGTGAATAGTGACCTAT 58.150 33.333 0.00 0.00 35.33 2.57
2180 3195 7.284489 GGCCAAAATAATGTGAATAGTGACCTA 59.716 37.037 0.00 0.00 0.00 3.08
2181 3196 6.096846 GGCCAAAATAATGTGAATAGTGACCT 59.903 38.462 0.00 0.00 0.00 3.85
2182 3197 6.127479 TGGCCAAAATAATGTGAATAGTGACC 60.127 38.462 0.61 0.00 0.00 4.02
2183 3198 6.862209 TGGCCAAAATAATGTGAATAGTGAC 58.138 36.000 0.61 0.00 0.00 3.67
2184 3199 7.473735 TTGGCCAAAATAATGTGAATAGTGA 57.526 32.000 17.98 0.00 0.00 3.41
2185 3200 8.545229 TTTTGGCCAAAATAATGTGAATAGTG 57.455 30.769 34.56 0.00 35.57 2.74
2186 3201 9.737844 AATTTTGGCCAAAATAATGTGAATAGT 57.262 25.926 42.25 26.12 46.76 2.12
2189 3204 9.694137 CAAAATTTTGGCCAAAATAATGTGAAT 57.306 25.926 42.25 27.72 46.76 2.57
2190 3205 8.689972 ACAAAATTTTGGCCAAAATAATGTGAA 58.310 25.926 40.10 25.08 46.76 3.18
2191 3206 8.230472 ACAAAATTTTGGCCAAAATAATGTGA 57.770 26.923 40.10 25.61 46.76 3.58
2192 3207 8.504812 GACAAAATTTTGGCCAAAATAATGTG 57.495 30.769 42.61 36.36 46.76 3.21
2219 3234 7.439108 TCCCCCTTTGACTTATTTTCAAAAA 57.561 32.000 0.00 0.00 41.32 1.94
2220 3235 7.625498 ATCCCCCTTTGACTTATTTTCAAAA 57.375 32.000 0.00 0.00 41.32 2.44
2221 3236 7.625498 AATCCCCCTTTGACTTATTTTCAAA 57.375 32.000 0.00 0.00 39.99 2.69
2222 3237 7.625498 AAATCCCCCTTTGACTTATTTTCAA 57.375 32.000 0.00 0.00 0.00 2.69
2223 3238 7.512402 AGAAAATCCCCCTTTGACTTATTTTCA 59.488 33.333 15.81 0.00 41.17 2.69
2224 3239 7.907389 AGAAAATCCCCCTTTGACTTATTTTC 58.093 34.615 0.00 0.00 39.99 2.29
2225 3240 7.872061 AGAAAATCCCCCTTTGACTTATTTT 57.128 32.000 0.00 0.00 0.00 1.82
2226 3241 7.872061 AAGAAAATCCCCCTTTGACTTATTT 57.128 32.000 0.00 0.00 0.00 1.40
2227 3242 7.872061 AAAGAAAATCCCCCTTTGACTTATT 57.128 32.000 0.00 0.00 0.00 1.40
2228 3243 7.292356 ACAAAAGAAAATCCCCCTTTGACTTAT 59.708 33.333 0.00 0.00 31.30 1.73
2229 3244 6.613679 ACAAAAGAAAATCCCCCTTTGACTTA 59.386 34.615 0.00 0.00 31.30 2.24
2230 3245 5.428457 ACAAAAGAAAATCCCCCTTTGACTT 59.572 36.000 0.00 0.00 31.30 3.01
2231 3246 4.968719 ACAAAAGAAAATCCCCCTTTGACT 59.031 37.500 0.00 0.00 31.30 3.41
2232 3247 5.056480 CACAAAAGAAAATCCCCCTTTGAC 58.944 41.667 0.00 0.00 31.30 3.18
2233 3248 4.965532 TCACAAAAGAAAATCCCCCTTTGA 59.034 37.500 0.00 0.00 31.30 2.69
2234 3249 5.289083 TCACAAAAGAAAATCCCCCTTTG 57.711 39.130 0.00 0.00 31.30 2.77
2235 3250 5.966853 TTCACAAAAGAAAATCCCCCTTT 57.033 34.783 0.00 0.00 0.00 3.11
2236 3251 5.966853 TTTCACAAAAGAAAATCCCCCTT 57.033 34.783 0.00 0.00 34.77 3.95
2237 3252 5.966853 TTTTCACAAAAGAAAATCCCCCT 57.033 34.783 0.00 0.00 41.22 4.79
2253 3268 9.301153 ACATTGTACTTGTGAGAAAATTTTCAC 57.699 29.630 28.00 23.04 43.07 3.18
2257 3272 9.965824 CCTTACATTGTACTTGTGAGAAAATTT 57.034 29.630 17.13 0.00 33.76 1.82
2258 3273 9.131791 ACCTTACATTGTACTTGTGAGAAAATT 57.868 29.630 17.13 0.00 33.76 1.82
2259 3274 8.691661 ACCTTACATTGTACTTGTGAGAAAAT 57.308 30.769 17.13 0.00 33.76 1.82
2260 3275 7.771361 TGACCTTACATTGTACTTGTGAGAAAA 59.229 33.333 17.13 3.59 33.76 2.29
2261 3276 7.276658 TGACCTTACATTGTACTTGTGAGAAA 58.723 34.615 17.13 3.86 33.76 2.52
2262 3277 6.822442 TGACCTTACATTGTACTTGTGAGAA 58.178 36.000 17.13 4.11 33.76 2.87
2263 3278 6.413783 TGACCTTACATTGTACTTGTGAGA 57.586 37.500 17.13 2.08 33.76 3.27
2264 3279 6.706270 ACTTGACCTTACATTGTACTTGTGAG 59.294 38.462 10.97 11.37 32.22 3.51
2265 3280 6.588204 ACTTGACCTTACATTGTACTTGTGA 58.412 36.000 10.97 3.85 0.00 3.58
2266 3281 6.706270 AGACTTGACCTTACATTGTACTTGTG 59.294 38.462 10.97 2.63 0.00 3.33
2267 3282 6.827727 AGACTTGACCTTACATTGTACTTGT 58.172 36.000 0.00 7.12 0.00 3.16
2268 3283 9.436957 AATAGACTTGACCTTACATTGTACTTG 57.563 33.333 0.00 0.00 0.00 3.16
2270 3285 9.654663 GAAATAGACTTGACCTTACATTGTACT 57.345 33.333 0.00 0.00 0.00 2.73
2271 3286 9.431887 TGAAATAGACTTGACCTTACATTGTAC 57.568 33.333 0.00 0.00 0.00 2.90
2273 3288 8.918202 TTGAAATAGACTTGACCTTACATTGT 57.082 30.769 0.00 0.00 0.00 2.71
2359 3374 4.018688 AGGGGACTTTTGGTCTATGGTAAC 60.019 45.833 0.00 0.00 43.97 2.50
2360 3375 4.180723 AGGGGACTTTTGGTCTATGGTAA 58.819 43.478 0.00 0.00 43.97 2.85
2361 3376 3.778629 GAGGGGACTTTTGGTCTATGGTA 59.221 47.826 0.00 0.00 44.43 3.25
2362 3377 2.576648 GAGGGGACTTTTGGTCTATGGT 59.423 50.000 0.00 0.00 44.43 3.55
2363 3378 2.092375 GGAGGGGACTTTTGGTCTATGG 60.092 54.545 0.00 0.00 44.43 2.74
2364 3379 2.092375 GGGAGGGGACTTTTGGTCTATG 60.092 54.545 0.00 0.00 44.43 2.23
2365 3380 2.206223 GGGAGGGGACTTTTGGTCTAT 58.794 52.381 0.00 0.00 44.43 1.98
2366 3381 1.665137 GGGAGGGGACTTTTGGTCTA 58.335 55.000 0.00 0.00 44.43 2.59
2367 3382 1.140772 GGGGAGGGGACTTTTGGTCT 61.141 60.000 0.00 0.00 44.43 3.85
2368 3383 1.140772 AGGGGAGGGGACTTTTGGTC 61.141 60.000 0.00 0.00 44.43 4.02
2369 3384 0.197661 TAGGGGAGGGGACTTTTGGT 59.802 55.000 0.00 0.00 44.43 3.67
2370 3385 1.215423 CATAGGGGAGGGGACTTTTGG 59.785 57.143 0.00 0.00 44.43 3.28
2371 3386 2.092375 GTCATAGGGGAGGGGACTTTTG 60.092 54.545 0.00 0.00 44.43 2.44
2372 3387 2.206223 GTCATAGGGGAGGGGACTTTT 58.794 52.381 0.00 0.00 44.43 2.27
2373 3388 1.628327 GGTCATAGGGGAGGGGACTTT 60.628 57.143 0.00 0.00 44.43 2.66
2374 3389 0.029989 GGTCATAGGGGAGGGGACTT 60.030 60.000 0.00 0.00 44.43 3.01
2376 3391 1.461655 GGGTCATAGGGGAGGGGAC 60.462 68.421 0.00 0.00 0.00 4.46
2377 3392 1.950000 TGGGTCATAGGGGAGGGGA 60.950 63.158 0.00 0.00 0.00 4.81
2378 3393 1.462238 CTGGGTCATAGGGGAGGGG 60.462 68.421 0.00 0.00 0.00 4.79
2379 3394 2.150051 GCTGGGTCATAGGGGAGGG 61.150 68.421 0.00 0.00 0.00 4.30
2380 3395 2.150051 GGCTGGGTCATAGGGGAGG 61.150 68.421 0.00 0.00 0.00 4.30
2381 3396 2.150051 GGGCTGGGTCATAGGGGAG 61.150 68.421 0.00 0.00 0.00 4.30
2382 3397 1.308738 TAGGGCTGGGTCATAGGGGA 61.309 60.000 0.00 0.00 0.00 4.81
2383 3398 0.838122 CTAGGGCTGGGTCATAGGGG 60.838 65.000 0.00 0.00 0.00 4.79
2445 3460 2.622190 GCATGGGATCATATGGCCATCA 60.622 50.000 24.80 12.79 31.33 3.07
2455 3470 2.024655 ACTTGTTGAGGCATGGGATCAT 60.025 45.455 0.00 0.00 0.00 2.45
2456 3471 1.355381 ACTTGTTGAGGCATGGGATCA 59.645 47.619 0.00 0.00 0.00 2.92
2457 3472 2.019984 GACTTGTTGAGGCATGGGATC 58.980 52.381 0.00 0.00 31.73 3.36
2466 3481 0.036010 ATGCGAGGGACTTGTTGAGG 60.036 55.000 0.00 0.00 43.14 3.86
2482 3497 0.528033 TGGCGCAACATTATGCATGC 60.528 50.000 11.82 11.82 46.76 4.06
2517 3532 0.401356 TGTCAGTGACATGCCCACAT 59.599 50.000 22.06 4.18 37.67 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.