Multiple sequence alignment - TraesCS3A01G100100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G100100 chr3A 100.000 5127 0 0 1 5127 64778121 64783247 0.000000e+00 9468.0
1 TraesCS3A01G100100 chr3A 96.203 158 6 0 2 159 715222869 715222712 5.090000e-65 259.0
2 TraesCS3A01G100100 chr3A 100.000 36 0 0 4333 4368 64782418 64782453 3.310000e-07 67.6
3 TraesCS3A01G100100 chr3A 100.000 36 0 0 4298 4333 64782453 64782488 3.310000e-07 67.6
4 TraesCS3A01G100100 chr3B 94.376 3823 170 24 532 4333 83881531 83885329 0.000000e+00 5827.0
5 TraesCS3A01G100100 chr3B 84.279 687 72 14 1123 1800 82453070 82452411 5.600000e-179 638.0
6 TraesCS3A01G100100 chr3B 83.139 599 73 11 1794 2391 82447174 82446603 5.880000e-144 521.0
7 TraesCS3A01G100100 chr3B 92.570 323 21 3 4805 5127 83885917 83886236 1.300000e-125 460.0
8 TraesCS3A01G100100 chr3B 93.636 220 9 4 4333 4550 83885294 83885510 1.780000e-84 324.0
9 TraesCS3A01G100100 chr3D 94.364 2360 107 18 337 2689 53462480 53464820 0.000000e+00 3598.0
10 TraesCS3A01G100100 chr3D 95.739 1596 55 11 2691 4281 53464984 53466571 0.000000e+00 2558.0
11 TraesCS3A01G100100 chr3D 93.137 204 11 3 4805 5008 53467223 53467423 3.880000e-76 296.0
12 TraesCS3A01G100100 chr3D 88.584 219 11 7 4333 4550 53466613 53466818 2.370000e-63 254.0
13 TraesCS3A01G100100 chr3D 97.468 79 1 1 4256 4333 53466571 53466649 3.220000e-27 134.0
14 TraesCS3A01G100100 chr1A 82.680 485 49 16 4659 5123 517894849 517894380 1.030000e-106 398.0
15 TraesCS3A01G100100 chr1A 89.450 218 17 4 4368 4585 517896090 517895879 2.350000e-68 270.0
16 TraesCS3A01G100100 chr1B 82.377 488 50 14 4659 5123 570840966 570840492 4.810000e-105 392.0
17 TraesCS3A01G100100 chr1B 90.367 218 15 4 4368 4585 570842207 570841996 1.090000e-71 281.0
18 TraesCS3A01G100100 chr1D 91.209 273 17 4 4659 4931 421881186 421880921 1.050000e-96 364.0
19 TraesCS3A01G100100 chr1D 88.991 218 18 4 4368 4585 421882427 421882216 1.090000e-66 265.0
20 TraesCS3A01G100100 chr6B 95.732 164 6 1 1 163 580307803 580307640 3.940000e-66 263.0
21 TraesCS3A01G100100 chr7A 95.152 165 8 0 1 165 700665382 700665218 1.420000e-65 261.0
22 TraesCS3A01G100100 chr7A 94.545 165 8 1 1 165 700647878 700647715 2.370000e-63 254.0
23 TraesCS3A01G100100 chr4A 95.152 165 7 1 1 164 146758413 146758577 5.090000e-65 259.0
24 TraesCS3A01G100100 chr4A 94.340 159 8 1 1 159 17247939 17248096 5.130000e-60 243.0
25 TraesCS3A01G100100 chr5A 94.611 167 7 2 1 166 275795928 275796093 1.830000e-64 257.0
26 TraesCS3A01G100100 chr5A 94.545 165 8 1 1 164 567893594 567893758 2.370000e-63 254.0
27 TraesCS3A01G100100 chr6A 94.012 167 8 2 1 166 383945424 383945589 8.520000e-63 252.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G100100 chr3A 64778121 64783247 5126 False 3201.066667 9468 100.000000 1 5127 3 chr3A.!!$F1 5126
1 TraesCS3A01G100100 chr3B 83881531 83886236 4705 False 2203.666667 5827 93.527333 532 5127 3 chr3B.!!$F1 4595
2 TraesCS3A01G100100 chr3B 82452411 82453070 659 True 638.000000 638 84.279000 1123 1800 1 chr3B.!!$R2 677
3 TraesCS3A01G100100 chr3B 82446603 82447174 571 True 521.000000 521 83.139000 1794 2391 1 chr3B.!!$R1 597
4 TraesCS3A01G100100 chr3D 53462480 53467423 4943 False 1368.000000 3598 93.858400 337 5008 5 chr3D.!!$F1 4671
5 TraesCS3A01G100100 chr1A 517894380 517896090 1710 True 334.000000 398 86.065000 4368 5123 2 chr1A.!!$R1 755
6 TraesCS3A01G100100 chr1B 570840492 570842207 1715 True 336.500000 392 86.372000 4368 5123 2 chr1B.!!$R1 755
7 TraesCS3A01G100100 chr1D 421880921 421882427 1506 True 314.500000 364 90.100000 4368 4931 2 chr1D.!!$R1 563

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
201 202 0.037697 TGACCGGCACACATCACTAC 60.038 55.000 0.00 0.00 0.00 2.73 F
262 263 0.102120 CAAAACTCAGCAACCCGCAA 59.898 50.000 0.00 0.00 46.13 4.85 F
322 323 0.102481 CACCTATGGGGACGACGAAG 59.898 60.000 0.00 0.00 38.76 3.79 F
324 325 0.102481 CCTATGGGGACGACGAAGTG 59.898 60.000 0.00 0.00 38.16 3.16 F
368 369 0.805614 GAGCCTTTTCGGGAAGCTTC 59.194 55.000 18.54 18.54 0.00 3.86 F
1529 1544 1.380302 GGTGGGCTGGACATTCAGT 59.620 57.895 0.00 0.00 37.12 3.41 F
2053 2070 1.026718 GGCTGCCGCTGTCAGTTTAT 61.027 55.000 1.35 0.00 36.09 1.40 F
3868 4066 1.375908 GCGCCAGACAATCCAGACA 60.376 57.895 0.00 0.00 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1724 1741 0.606401 ATCTGCACCCAAGGAACACG 60.606 55.000 0.00 0.0 0.00 4.49 R
1888 1905 0.991920 TCACAGGATTCCTCAACCCC 59.008 55.000 0.98 0.0 0.00 4.95 R
1944 1961 1.064463 TGGATGGACCAAGATCTTGCC 60.064 52.381 27.01 23.0 46.75 4.52 R
1998 2015 4.499019 CCAACGGTTGTACAAAAGCATCTT 60.499 41.667 18.73 0.0 0.00 2.40 R
2053 2070 7.355101 ACCATAAGAGGTCTACTGTAATCAGA 58.645 38.462 2.17 0.0 39.80 3.27 R
2928 3116 0.588252 CAACAAGACAGCCAACGGAG 59.412 55.000 0.00 0.0 0.00 4.63 R
3892 4090 0.896940 TCAGGAGGCGGTACTCGTTT 60.897 55.000 5.79 0.0 41.72 3.60 R
5016 6227 0.738389 CCGACAGGTGCAAAAACAGT 59.262 50.000 0.00 0.0 0.00 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 9.540538 TTTTATTTTCCTATGAAATGTGGAGGA 57.459 29.630 0.00 0.00 40.08 3.71
33 34 9.713684 TTTATTTTCCTATGAAATGTGGAGGAT 57.286 29.630 0.00 0.00 40.08 3.24
35 36 8.930846 ATTTTCCTATGAAATGTGGAGGATAG 57.069 34.615 0.00 0.00 40.08 2.08
36 37 6.439636 TTCCTATGAAATGTGGAGGATAGG 57.560 41.667 0.00 0.00 36.22 2.57
37 38 5.726560 TCCTATGAAATGTGGAGGATAGGA 58.273 41.667 0.00 0.00 39.29 2.94
38 39 6.150332 TCCTATGAAATGTGGAGGATAGGAA 58.850 40.000 0.00 0.00 38.86 3.36
39 40 6.043243 TCCTATGAAATGTGGAGGATAGGAAC 59.957 42.308 0.00 0.00 38.86 3.62
40 41 4.503714 TGAAATGTGGAGGATAGGAACC 57.496 45.455 0.00 0.00 0.00 3.62
41 42 3.849574 TGAAATGTGGAGGATAGGAACCA 59.150 43.478 0.00 0.00 0.00 3.67
42 43 4.290985 TGAAATGTGGAGGATAGGAACCAA 59.709 41.667 0.00 0.00 34.11 3.67
43 44 5.044179 TGAAATGTGGAGGATAGGAACCAAT 60.044 40.000 0.00 0.00 34.11 3.16
44 45 4.713792 ATGTGGAGGATAGGAACCAATC 57.286 45.455 0.00 0.00 34.11 2.67
82 83 6.396829 GAATCCATTCCTATGAACCAAAGG 57.603 41.667 0.00 0.00 33.37 3.11
83 84 5.732331 ATCCATTCCTATGAACCAAAGGA 57.268 39.130 0.00 0.00 37.64 3.36
84 85 4.855340 TCCATTCCTATGAACCAAAGGAC 58.145 43.478 0.00 0.00 39.13 3.85
85 86 4.540099 TCCATTCCTATGAACCAAAGGACT 59.460 41.667 0.00 0.00 39.13 3.85
86 87 4.884164 CCATTCCTATGAACCAAAGGACTC 59.116 45.833 0.00 0.00 39.13 3.36
87 88 5.339530 CCATTCCTATGAACCAAAGGACTCT 60.340 44.000 0.00 0.00 39.13 3.24
88 89 6.126768 CCATTCCTATGAACCAAAGGACTCTA 60.127 42.308 0.00 0.00 39.13 2.43
89 90 6.945636 TTCCTATGAACCAAAGGACTCTAA 57.054 37.500 0.00 0.00 39.13 2.10
90 91 6.945636 TCCTATGAACCAAAGGACTCTAAA 57.054 37.500 0.00 0.00 34.46 1.85
91 92 6.947464 TCCTATGAACCAAAGGACTCTAAAG 58.053 40.000 0.00 0.00 34.46 1.85
92 93 6.729100 TCCTATGAACCAAAGGACTCTAAAGA 59.271 38.462 0.00 0.00 34.46 2.52
93 94 7.236847 TCCTATGAACCAAAGGACTCTAAAGAA 59.763 37.037 0.00 0.00 34.46 2.52
94 95 7.883311 CCTATGAACCAAAGGACTCTAAAGAAA 59.117 37.037 0.00 0.00 31.64 2.52
95 96 9.284968 CTATGAACCAAAGGACTCTAAAGAAAA 57.715 33.333 0.00 0.00 0.00 2.29
96 97 7.948034 TGAACCAAAGGACTCTAAAGAAAAA 57.052 32.000 0.00 0.00 0.00 1.94
148 149 7.423844 AATTCCTATGAAATTCCTCCAAACC 57.576 36.000 0.00 0.00 33.32 3.27
149 150 5.528600 TCCTATGAAATTCCTCCAAACCA 57.471 39.130 0.00 0.00 0.00 3.67
150 151 5.898120 TCCTATGAAATTCCTCCAAACCAA 58.102 37.500 0.00 0.00 0.00 3.67
151 152 6.318913 TCCTATGAAATTCCTCCAAACCAAA 58.681 36.000 0.00 0.00 0.00 3.28
152 153 6.437162 TCCTATGAAATTCCTCCAAACCAAAG 59.563 38.462 0.00 0.00 0.00 2.77
153 154 6.437162 CCTATGAAATTCCTCCAAACCAAAGA 59.563 38.462 0.00 0.00 0.00 2.52
154 155 6.745794 ATGAAATTCCTCCAAACCAAAGAA 57.254 33.333 0.00 0.00 0.00 2.52
155 156 6.160576 TGAAATTCCTCCAAACCAAAGAAG 57.839 37.500 0.00 0.00 0.00 2.85
156 157 5.070313 TGAAATTCCTCCAAACCAAAGAAGG 59.930 40.000 0.00 0.00 0.00 3.46
157 158 1.995376 TCCTCCAAACCAAAGAAGGC 58.005 50.000 0.00 0.00 0.00 4.35
158 159 0.969149 CCTCCAAACCAAAGAAGGCC 59.031 55.000 0.00 0.00 0.00 5.19
159 160 1.703411 CTCCAAACCAAAGAAGGCCA 58.297 50.000 5.01 0.00 0.00 5.36
160 161 2.038659 CTCCAAACCAAAGAAGGCCAA 58.961 47.619 5.01 0.00 0.00 4.52
161 162 2.634453 CTCCAAACCAAAGAAGGCCAAT 59.366 45.455 5.01 0.00 0.00 3.16
162 163 3.831911 CTCCAAACCAAAGAAGGCCAATA 59.168 43.478 5.01 0.00 0.00 1.90
163 164 3.831911 TCCAAACCAAAGAAGGCCAATAG 59.168 43.478 5.01 0.00 0.00 1.73
164 165 3.055891 CCAAACCAAAGAAGGCCAATAGG 60.056 47.826 5.01 0.89 38.23 2.57
165 166 3.542969 AACCAAAGAAGGCCAATAGGT 57.457 42.857 5.01 1.63 37.19 3.08
166 167 4.668138 AACCAAAGAAGGCCAATAGGTA 57.332 40.909 5.01 0.00 37.19 3.08
167 168 4.236527 ACCAAAGAAGGCCAATAGGTAG 57.763 45.455 5.01 0.00 37.19 3.18
168 169 3.053619 ACCAAAGAAGGCCAATAGGTAGG 60.054 47.826 5.01 0.00 37.19 3.18
169 170 3.053619 CCAAAGAAGGCCAATAGGTAGGT 60.054 47.826 5.01 0.00 37.19 3.08
170 171 4.200092 CAAAGAAGGCCAATAGGTAGGTC 58.800 47.826 5.01 0.00 37.19 3.85
171 172 3.130734 AGAAGGCCAATAGGTAGGTCA 57.869 47.619 5.01 0.00 37.19 4.02
172 173 3.041946 AGAAGGCCAATAGGTAGGTCAG 58.958 50.000 5.01 0.00 37.19 3.51
173 174 1.132500 AGGCCAATAGGTAGGTCAGC 58.868 55.000 5.01 0.00 37.19 4.26
174 175 0.108774 GGCCAATAGGTAGGTCAGCC 59.891 60.000 0.00 0.00 37.19 4.85
175 176 0.108774 GCCAATAGGTAGGTCAGCCC 59.891 60.000 0.00 0.00 37.19 5.19
176 177 1.507140 CCAATAGGTAGGTCAGCCCA 58.493 55.000 0.00 0.00 34.66 5.36
177 178 1.141053 CCAATAGGTAGGTCAGCCCAC 59.859 57.143 0.00 0.00 34.66 4.61
178 179 1.837439 CAATAGGTAGGTCAGCCCACA 59.163 52.381 0.00 0.00 34.66 4.17
179 180 1.497161 ATAGGTAGGTCAGCCCACAC 58.503 55.000 0.00 0.00 34.66 3.82
180 181 0.412244 TAGGTAGGTCAGCCCACACT 59.588 55.000 0.00 0.00 34.66 3.55
181 182 0.905337 AGGTAGGTCAGCCCACACTC 60.905 60.000 0.00 0.00 34.66 3.51
182 183 0.905337 GGTAGGTCAGCCCACACTCT 60.905 60.000 0.00 0.00 34.66 3.24
183 184 0.247736 GTAGGTCAGCCCACACTCTG 59.752 60.000 0.00 0.00 34.66 3.35
184 185 0.114364 TAGGTCAGCCCACACTCTGA 59.886 55.000 0.00 0.00 37.03 3.27
186 187 3.471620 TCAGCCCACACTCTGACC 58.528 61.111 0.00 0.00 34.69 4.02
187 188 2.047844 CAGCCCACACTCTGACCG 60.048 66.667 0.00 0.00 32.26 4.79
188 189 3.314331 AGCCCACACTCTGACCGG 61.314 66.667 0.00 0.00 0.00 5.28
190 191 3.625897 CCCACACTCTGACCGGCA 61.626 66.667 0.00 0.00 0.00 5.69
191 192 2.357517 CCACACTCTGACCGGCAC 60.358 66.667 0.00 0.00 0.00 5.01
192 193 2.421314 CACACTCTGACCGGCACA 59.579 61.111 0.00 0.63 0.00 4.57
193 194 1.956170 CACACTCTGACCGGCACAC 60.956 63.158 0.00 0.00 0.00 3.82
194 195 2.421314 CACTCTGACCGGCACACA 59.579 61.111 0.00 0.00 0.00 3.72
195 196 1.004560 CACTCTGACCGGCACACAT 60.005 57.895 0.00 0.00 0.00 3.21
196 197 1.016130 CACTCTGACCGGCACACATC 61.016 60.000 0.00 0.00 0.00 3.06
197 198 1.293179 CTCTGACCGGCACACATCA 59.707 57.895 0.00 0.00 0.00 3.07
198 199 1.005037 TCTGACCGGCACACATCAC 60.005 57.895 0.00 0.00 0.00 3.06
199 200 1.004560 CTGACCGGCACACATCACT 60.005 57.895 0.00 0.00 0.00 3.41
200 201 0.246360 CTGACCGGCACACATCACTA 59.754 55.000 0.00 0.00 0.00 2.74
201 202 0.037697 TGACCGGCACACATCACTAC 60.038 55.000 0.00 0.00 0.00 2.73
202 203 0.037697 GACCGGCACACATCACTACA 60.038 55.000 0.00 0.00 0.00 2.74
203 204 0.394938 ACCGGCACACATCACTACAA 59.605 50.000 0.00 0.00 0.00 2.41
204 205 0.796312 CCGGCACACATCACTACAAC 59.204 55.000 0.00 0.00 0.00 3.32
205 206 1.507562 CGGCACACATCACTACAACA 58.492 50.000 0.00 0.00 0.00 3.33
206 207 1.194547 CGGCACACATCACTACAACAC 59.805 52.381 0.00 0.00 0.00 3.32
207 208 2.217750 GGCACACATCACTACAACACA 58.782 47.619 0.00 0.00 0.00 3.72
208 209 2.813754 GGCACACATCACTACAACACAT 59.186 45.455 0.00 0.00 0.00 3.21
209 210 4.000325 GGCACACATCACTACAACACATA 59.000 43.478 0.00 0.00 0.00 2.29
210 211 4.093408 GGCACACATCACTACAACACATAG 59.907 45.833 0.00 0.00 0.00 2.23
211 212 4.929211 GCACACATCACTACAACACATAGA 59.071 41.667 0.00 0.00 0.00 1.98
212 213 5.408299 GCACACATCACTACAACACATAGAA 59.592 40.000 0.00 0.00 0.00 2.10
213 214 6.401474 GCACACATCACTACAACACATAGAAG 60.401 42.308 0.00 0.00 0.00 2.85
214 215 5.639506 ACACATCACTACAACACATAGAAGC 59.360 40.000 0.00 0.00 0.00 3.86
215 216 5.063944 CACATCACTACAACACATAGAAGCC 59.936 44.000 0.00 0.00 0.00 4.35
216 217 4.202245 TCACTACAACACATAGAAGCCC 57.798 45.455 0.00 0.00 0.00 5.19
217 218 3.580895 TCACTACAACACATAGAAGCCCA 59.419 43.478 0.00 0.00 0.00 5.36
218 219 4.041075 TCACTACAACACATAGAAGCCCAA 59.959 41.667 0.00 0.00 0.00 4.12
219 220 4.154195 CACTACAACACATAGAAGCCCAAC 59.846 45.833 0.00 0.00 0.00 3.77
220 221 2.151202 ACAACACATAGAAGCCCAACG 58.849 47.619 0.00 0.00 0.00 4.10
221 222 2.224426 ACAACACATAGAAGCCCAACGA 60.224 45.455 0.00 0.00 0.00 3.85
222 223 2.811431 CAACACATAGAAGCCCAACGAA 59.189 45.455 0.00 0.00 0.00 3.85
223 224 2.699954 ACACATAGAAGCCCAACGAAG 58.300 47.619 0.00 0.00 0.00 3.79
224 225 1.398390 CACATAGAAGCCCAACGAAGC 59.602 52.381 0.00 0.00 0.00 3.86
225 226 1.279271 ACATAGAAGCCCAACGAAGCT 59.721 47.619 0.00 0.00 42.40 3.74
226 227 1.936547 CATAGAAGCCCAACGAAGCTC 59.063 52.381 0.00 0.00 38.74 4.09
227 228 0.973632 TAGAAGCCCAACGAAGCTCA 59.026 50.000 0.00 0.00 38.74 4.26
228 229 0.603975 AGAAGCCCAACGAAGCTCAC 60.604 55.000 0.00 0.00 38.74 3.51
229 230 0.884704 GAAGCCCAACGAAGCTCACA 60.885 55.000 0.00 0.00 38.74 3.58
230 231 0.465460 AAGCCCAACGAAGCTCACAA 60.465 50.000 0.00 0.00 38.74 3.33
231 232 1.166531 AGCCCAACGAAGCTCACAAC 61.167 55.000 0.00 0.00 32.71 3.32
232 233 1.444119 GCCCAACGAAGCTCACAACA 61.444 55.000 0.00 0.00 0.00 3.33
233 234 1.021202 CCCAACGAAGCTCACAACAA 58.979 50.000 0.00 0.00 0.00 2.83
234 235 1.403679 CCCAACGAAGCTCACAACAAA 59.596 47.619 0.00 0.00 0.00 2.83
235 236 2.450160 CCAACGAAGCTCACAACAAAC 58.550 47.619 0.00 0.00 0.00 2.93
236 237 2.159448 CCAACGAAGCTCACAACAAACA 60.159 45.455 0.00 0.00 0.00 2.83
237 238 3.100817 CAACGAAGCTCACAACAAACAG 58.899 45.455 0.00 0.00 0.00 3.16
238 239 1.064060 ACGAAGCTCACAACAAACAGC 59.936 47.619 0.00 0.00 0.00 4.40
239 240 1.597937 CGAAGCTCACAACAAACAGCC 60.598 52.381 0.00 0.00 31.81 4.85
240 241 1.405105 GAAGCTCACAACAAACAGCCA 59.595 47.619 0.00 0.00 31.81 4.75
241 242 1.696063 AGCTCACAACAAACAGCCAT 58.304 45.000 0.00 0.00 31.81 4.40
242 243 1.338973 AGCTCACAACAAACAGCCATG 59.661 47.619 0.00 0.00 31.81 3.66
243 244 1.774639 CTCACAACAAACAGCCATGC 58.225 50.000 0.00 0.00 0.00 4.06
244 245 1.067364 CTCACAACAAACAGCCATGCA 59.933 47.619 0.00 0.00 0.00 3.96
245 246 1.479730 TCACAACAAACAGCCATGCAA 59.520 42.857 0.00 0.00 0.00 4.08
246 247 2.093816 TCACAACAAACAGCCATGCAAA 60.094 40.909 0.00 0.00 0.00 3.68
247 248 2.676839 CACAACAAACAGCCATGCAAAA 59.323 40.909 0.00 0.00 0.00 2.44
248 249 2.677337 ACAACAAACAGCCATGCAAAAC 59.323 40.909 0.00 0.00 0.00 2.43
249 250 2.937799 CAACAAACAGCCATGCAAAACT 59.062 40.909 0.00 0.00 0.00 2.66
250 251 2.825205 ACAAACAGCCATGCAAAACTC 58.175 42.857 0.00 0.00 0.00 3.01
251 252 2.168106 ACAAACAGCCATGCAAAACTCA 59.832 40.909 0.00 0.00 0.00 3.41
252 253 2.798283 CAAACAGCCATGCAAAACTCAG 59.202 45.455 0.00 0.00 0.00 3.35
253 254 0.316204 ACAGCCATGCAAAACTCAGC 59.684 50.000 0.00 0.00 0.00 4.26
254 255 0.315886 CAGCCATGCAAAACTCAGCA 59.684 50.000 0.00 0.00 45.92 4.41
255 256 1.042229 AGCCATGCAAAACTCAGCAA 58.958 45.000 0.00 0.00 44.88 3.91
256 257 1.142474 GCCATGCAAAACTCAGCAAC 58.858 50.000 0.00 0.00 44.88 4.17
257 258 1.787012 CCATGCAAAACTCAGCAACC 58.213 50.000 0.00 0.00 44.88 3.77
258 259 1.606224 CCATGCAAAACTCAGCAACCC 60.606 52.381 0.00 0.00 44.88 4.11
259 260 0.314935 ATGCAAAACTCAGCAACCCG 59.685 50.000 0.00 0.00 44.88 5.28
260 261 1.661509 GCAAAACTCAGCAACCCGC 60.662 57.895 0.00 0.00 42.91 6.13
261 262 1.732917 CAAAACTCAGCAACCCGCA 59.267 52.632 0.00 0.00 46.13 5.69
262 263 0.102120 CAAAACTCAGCAACCCGCAA 59.898 50.000 0.00 0.00 46.13 4.85
263 264 0.820871 AAAACTCAGCAACCCGCAAA 59.179 45.000 0.00 0.00 46.13 3.68
264 265 0.820871 AAACTCAGCAACCCGCAAAA 59.179 45.000 0.00 0.00 46.13 2.44
265 266 0.820871 AACTCAGCAACCCGCAAAAA 59.179 45.000 0.00 0.00 46.13 1.94
285 286 4.866682 AAAGCTAAATCTCGCTTACTGC 57.133 40.909 0.00 0.00 45.03 4.40
286 287 3.526931 AGCTAAATCTCGCTTACTGCA 57.473 42.857 0.00 0.00 43.06 4.41
287 288 3.861840 AGCTAAATCTCGCTTACTGCAA 58.138 40.909 0.00 0.00 43.06 4.08
288 289 3.868077 AGCTAAATCTCGCTTACTGCAAG 59.132 43.478 0.00 0.00 43.06 4.01
289 290 3.001736 GCTAAATCTCGCTTACTGCAAGG 59.998 47.826 0.00 0.00 43.06 3.61
290 291 1.373570 AATCTCGCTTACTGCAAGGC 58.626 50.000 0.00 0.00 43.06 4.35
291 292 0.250234 ATCTCGCTTACTGCAAGGCA 59.750 50.000 0.00 0.00 43.06 4.75
292 293 0.250234 TCTCGCTTACTGCAAGGCAT 59.750 50.000 0.00 0.00 43.06 4.40
293 294 0.654683 CTCGCTTACTGCAAGGCATC 59.345 55.000 0.00 0.00 43.06 3.91
294 295 0.744414 TCGCTTACTGCAAGGCATCC 60.744 55.000 0.00 0.00 43.06 3.51
295 296 1.723870 GCTTACTGCAAGGCATCCG 59.276 57.895 0.00 0.00 42.31 4.18
296 297 1.026718 GCTTACTGCAAGGCATCCGT 61.027 55.000 0.00 0.00 42.31 4.69
297 298 1.009829 CTTACTGCAAGGCATCCGTC 58.990 55.000 0.00 0.00 38.13 4.79
298 299 0.739462 TTACTGCAAGGCATCCGTCG 60.739 55.000 0.00 0.00 38.13 5.12
299 300 2.572095 TACTGCAAGGCATCCGTCGG 62.572 60.000 4.39 4.39 38.13 4.79
300 301 3.958147 CTGCAAGGCATCCGTCGGT 62.958 63.158 11.88 0.00 38.13 4.69
301 302 3.195698 GCAAGGCATCCGTCGGTC 61.196 66.667 11.88 1.86 0.00 4.79
302 303 2.579201 CAAGGCATCCGTCGGTCT 59.421 61.111 11.88 2.49 0.00 3.85
303 304 1.519455 CAAGGCATCCGTCGGTCTC 60.519 63.158 11.88 1.12 0.00 3.36
304 305 1.982395 AAGGCATCCGTCGGTCTCA 60.982 57.895 11.88 0.00 0.00 3.27
305 306 2.202756 GGCATCCGTCGGTCTCAC 60.203 66.667 11.88 0.00 0.00 3.51
306 307 2.202756 GCATCCGTCGGTCTCACC 60.203 66.667 11.88 0.00 34.05 4.02
307 308 2.711922 GCATCCGTCGGTCTCACCT 61.712 63.158 11.88 0.00 35.66 4.00
308 309 1.381928 GCATCCGTCGGTCTCACCTA 61.382 60.000 11.88 0.00 35.66 3.08
309 310 1.319541 CATCCGTCGGTCTCACCTAT 58.680 55.000 11.88 0.00 35.66 2.57
310 311 1.001268 CATCCGTCGGTCTCACCTATG 60.001 57.143 11.88 0.93 35.66 2.23
311 312 0.750546 TCCGTCGGTCTCACCTATGG 60.751 60.000 11.88 0.00 40.47 2.74
312 313 1.734137 CGTCGGTCTCACCTATGGG 59.266 63.158 0.00 0.00 35.66 4.00
313 314 1.735376 CGTCGGTCTCACCTATGGGG 61.735 65.000 0.00 0.00 35.66 4.96
314 315 0.396695 GTCGGTCTCACCTATGGGGA 60.397 60.000 0.00 0.00 35.66 4.81
315 316 0.396695 TCGGTCTCACCTATGGGGAC 60.397 60.000 0.00 0.00 35.66 4.46
316 317 1.735376 CGGTCTCACCTATGGGGACG 61.735 65.000 0.00 0.00 35.66 4.79
317 318 0.396695 GGTCTCACCTATGGGGACGA 60.397 60.000 0.00 0.00 38.76 4.20
318 319 0.745468 GTCTCACCTATGGGGACGAC 59.255 60.000 0.00 0.00 38.76 4.34
319 320 0.750546 TCTCACCTATGGGGACGACG 60.751 60.000 0.00 0.00 38.76 5.12
320 321 0.750546 CTCACCTATGGGGACGACGA 60.751 60.000 0.00 0.00 38.76 4.20
321 322 0.323633 TCACCTATGGGGACGACGAA 60.324 55.000 0.00 0.00 38.76 3.85
322 323 0.102481 CACCTATGGGGACGACGAAG 59.898 60.000 0.00 0.00 38.76 3.79
323 324 0.324091 ACCTATGGGGACGACGAAGT 60.324 55.000 0.00 0.00 41.27 3.01
324 325 0.102481 CCTATGGGGACGACGAAGTG 59.898 60.000 0.00 0.00 38.16 3.16
325 326 2.564080 CCTATGGGGACGACGAAGTGT 61.564 57.143 0.00 0.00 38.16 3.55
326 327 4.659708 CCTATGGGGACGACGAAGTGTG 62.660 59.091 0.00 0.00 38.16 3.82
334 335 2.821685 ACGAAGTGTGCTGGCTGA 59.178 55.556 0.00 0.00 42.51 4.26
335 336 1.146041 ACGAAGTGTGCTGGCTGAA 59.854 52.632 0.00 0.00 42.51 3.02
358 359 2.973945 AGTGTGATACCGAGCCTTTTC 58.026 47.619 0.00 0.00 0.00 2.29
359 360 1.659098 GTGTGATACCGAGCCTTTTCG 59.341 52.381 0.00 0.00 40.18 3.46
368 369 0.805614 GAGCCTTTTCGGGAAGCTTC 59.194 55.000 18.54 18.54 0.00 3.86
411 412 2.787035 TCCACCTAGTTTTGGGAAGGTT 59.213 45.455 3.17 0.00 40.39 3.50
451 453 7.912949 TTTCATTTTTCTGTGTTCTTCATCG 57.087 32.000 0.00 0.00 0.00 3.84
463 465 8.338985 TGTGTTCTTCATCGATTTTTCTTTTG 57.661 30.769 0.00 0.00 0.00 2.44
464 466 8.187480 TGTGTTCTTCATCGATTTTTCTTTTGA 58.813 29.630 0.00 0.00 0.00 2.69
615 618 7.462109 TTGTAAAATGCACATTGAACACTTC 57.538 32.000 9.39 0.00 30.70 3.01
713 717 8.710551 TCATGAACATATTTTTGAAATGCACAC 58.289 29.630 0.00 0.00 0.00 3.82
718 722 9.486497 AACATATTTTTGAAATGCACACACATA 57.514 25.926 0.00 0.00 0.00 2.29
882 889 2.209273 ACAATTTTTGCAAAGGCGTCC 58.791 42.857 12.41 0.00 45.35 4.79
902 909 6.044682 CGTCCCTTGGTTTAGATTACGTATT 58.955 40.000 0.00 0.00 0.00 1.89
930 937 1.529226 CCGCCAACATGACCTAAACA 58.471 50.000 0.00 0.00 0.00 2.83
932 939 2.491693 CCGCCAACATGACCTAAACATT 59.508 45.455 0.00 0.00 0.00 2.71
1013 1020 3.174265 CCCCATGGCCTCCTCCTC 61.174 72.222 6.09 0.00 0.00 3.71
1014 1021 3.174265 CCCATGGCCTCCTCCTCC 61.174 72.222 6.09 0.00 0.00 4.30
1015 1022 2.040043 CCATGGCCTCCTCCTCCT 60.040 66.667 3.32 0.00 0.00 3.69
1084 1091 3.816524 AGCGGTTCTCGGAGCTCG 61.817 66.667 7.83 3.33 39.69 5.03
1346 1353 7.916552 TCTGTTACTGTTCTTTAGTTTTGCTC 58.083 34.615 0.00 0.00 0.00 4.26
1381 1388 8.433126 CCGTGTAGTAGTTCAGTTTTGATTAAG 58.567 37.037 0.00 0.00 32.27 1.85
1517 1524 1.463674 CATTCTACTGGTTGGTGGGC 58.536 55.000 0.00 0.00 0.00 5.36
1529 1544 1.380302 GGTGGGCTGGACATTCAGT 59.620 57.895 0.00 0.00 37.12 3.41
1570 1585 1.666189 GAAGAGGGCGCAAACATACTC 59.334 52.381 10.83 4.71 0.00 2.59
1724 1741 8.825745 ACATGTGTTGATGTTATTTTGGTTTTC 58.174 29.630 0.00 0.00 32.38 2.29
1729 1746 7.545965 TGTTGATGTTATTTTGGTTTTCGTGTT 59.454 29.630 0.00 0.00 0.00 3.32
1736 1753 1.394618 TGGTTTTCGTGTTCCTTGGG 58.605 50.000 0.00 0.00 0.00 4.12
1944 1961 3.267860 GGCGAAGGATGCTGCTCG 61.268 66.667 4.14 4.14 0.00 5.03
1998 2015 1.613928 TCCGGTTGGAGGTATGGCA 60.614 57.895 0.00 0.00 40.17 4.92
2014 2031 4.870123 ATGGCAAGATGCTTTTGTACAA 57.130 36.364 3.59 3.59 44.28 2.41
2053 2070 1.026718 GGCTGCCGCTGTCAGTTTAT 61.027 55.000 1.35 0.00 36.09 1.40
2474 2491 7.921786 TGTACTATTAAATGGCCAGATATGC 57.078 36.000 13.05 0.00 0.00 3.14
2666 2687 7.087409 TGATCTAATTGTGCAGGTTACATTG 57.913 36.000 0.00 0.00 0.00 2.82
2689 2872 2.431057 AGTGCTATGGTCTTACCCTTCG 59.569 50.000 0.00 0.00 37.50 3.79
2693 2876 3.869832 GCTATGGTCTTACCCTTCGAAAC 59.130 47.826 0.00 0.00 37.50 2.78
2705 2888 6.716898 ACCCTTCGAAACTATTTCTTTACG 57.283 37.500 0.00 0.00 37.52 3.18
2727 2910 9.953697 TTACGTTTAGTAATCAATTGCAAAGTT 57.046 25.926 1.71 0.00 40.15 2.66
2730 2913 8.751335 CGTTTAGTAATCAATTGCAAAGTTTGT 58.249 29.630 16.70 0.00 0.00 2.83
2867 3055 8.813643 ACGGTAATGTAATCTATGTTAAGCTC 57.186 34.615 0.00 0.00 0.00 4.09
2927 3115 6.866010 TGTTGGTCTATGCTGCAATTATAG 57.134 37.500 6.36 3.91 0.00 1.31
2928 3116 5.239306 TGTTGGTCTATGCTGCAATTATAGC 59.761 40.000 6.36 6.24 40.29 2.97
2931 3119 4.633565 GGTCTATGCTGCAATTATAGCTCC 59.366 45.833 6.36 6.40 40.52 4.70
2998 3188 2.935238 GCAGGAGGATGCTTACGTTGAA 60.935 50.000 0.00 0.00 43.07 2.69
3136 3326 2.301870 CACTTGAGCCAAGGTACCACTA 59.698 50.000 15.94 0.00 44.81 2.74
3148 3338 7.920682 GCCAAGGTACCACTAAAATATCATTTG 59.079 37.037 15.94 4.31 0.00 2.32
3149 3339 7.920682 CCAAGGTACCACTAAAATATCATTTGC 59.079 37.037 15.94 0.00 0.00 3.68
3175 3365 6.828785 TCATGCTGACTACTGACTAATGTCTA 59.171 38.462 0.00 0.00 43.29 2.59
3490 3680 1.376543 ATTTGCATCGTCTCAGCTGG 58.623 50.000 15.13 4.77 0.00 4.85
3504 3694 2.705127 TCAGCTGGCCCATTTTCTTTTT 59.295 40.909 15.13 0.00 0.00 1.94
3555 3748 1.668751 TGAACTTGTGTTGGTTCGAGC 59.331 47.619 0.00 0.00 43.10 5.03
3618 3811 2.621055 TCACCCTGTCAAAATGAAACCG 59.379 45.455 0.00 0.00 0.00 4.44
3654 3847 6.950842 TCATATGTTTGGATGTCAAGAGTCT 58.049 36.000 1.90 0.00 36.62 3.24
3693 3891 1.499007 AGTGGGGGTTGACATGTTTCT 59.501 47.619 0.00 0.00 0.00 2.52
3868 4066 1.375908 GCGCCAGACAATCCAGACA 60.376 57.895 0.00 0.00 0.00 3.41
3892 4090 1.483827 GAGGACATGGATGAGCTGACA 59.516 52.381 0.00 0.00 0.00 3.58
3937 4135 0.817654 TGAAGCGTGGAGTGATCGAT 59.182 50.000 0.00 0.00 0.00 3.59
4136 4334 6.793349 AGCAAGAGAAGATGAAAATGTATGC 58.207 36.000 0.00 0.00 0.00 3.14
4138 4336 5.415415 AGAGAAGATGAAAATGTATGCGC 57.585 39.130 0.00 0.00 0.00 6.09
4151 4349 2.938451 TGTATGCGCATCTTTGGAAGAG 59.062 45.455 29.11 0.00 41.61 2.85
4302 4525 0.100325 TGGCGCGGCATTTTATCTTG 59.900 50.000 33.04 0.00 0.00 3.02
4319 4542 5.749596 ATCTTGTGTGTCATTCGAAACAA 57.250 34.783 0.00 6.30 41.15 2.83
4320 4543 5.553290 TCTTGTGTGTCATTCGAAACAAA 57.447 34.783 0.00 0.00 41.15 2.83
4321 4544 5.944013 TCTTGTGTGTCATTCGAAACAAAA 58.056 33.333 0.00 2.45 41.15 2.44
4322 4545 6.382608 TCTTGTGTGTCATTCGAAACAAAAA 58.617 32.000 0.00 0.03 41.15 1.94
4343 4566 7.454260 AAAAATAGAAGGGATCTTGTGTGTC 57.546 36.000 0.00 0.00 39.71 3.67
4344 4567 5.762179 AATAGAAGGGATCTTGTGTGTCA 57.238 39.130 0.00 0.00 39.71 3.58
4421 4644 3.323115 CAGACCAGGATGAAGCTATAGCA 59.677 47.826 26.07 6.60 41.13 3.49
4550 5268 8.763356 GCAAGAGATAACATAGATTCAGAGTTG 58.237 37.037 0.00 0.00 0.00 3.16
4551 5269 8.763356 CAAGAGATAACATAGATTCAGAGTTGC 58.237 37.037 0.00 0.00 0.00 4.17
4553 5271 8.649591 AGAGATAACATAGATTCAGAGTTGCAT 58.350 33.333 0.00 0.00 0.00 3.96
4554 5272 9.270640 GAGATAACATAGATTCAGAGTTGCATT 57.729 33.333 0.00 0.00 0.00 3.56
4555 5273 9.270640 AGATAACATAGATTCAGAGTTGCATTC 57.729 33.333 0.00 0.00 0.00 2.67
4556 5274 6.690194 AACATAGATTCAGAGTTGCATTCC 57.310 37.500 0.00 0.00 0.00 3.01
4557 5275 5.128919 ACATAGATTCAGAGTTGCATTCCC 58.871 41.667 0.00 0.00 0.00 3.97
4558 5276 5.104193 ACATAGATTCAGAGTTGCATTCCCT 60.104 40.000 0.00 0.00 0.00 4.20
4559 5277 6.100279 ACATAGATTCAGAGTTGCATTCCCTA 59.900 38.462 0.00 0.00 0.00 3.53
4560 5278 5.033589 AGATTCAGAGTTGCATTCCCTAG 57.966 43.478 0.00 0.00 0.00 3.02
4561 5279 4.472833 AGATTCAGAGTTGCATTCCCTAGT 59.527 41.667 0.00 0.00 0.00 2.57
4562 5280 4.640771 TTCAGAGTTGCATTCCCTAGTT 57.359 40.909 0.00 0.00 0.00 2.24
4563 5281 5.755409 TTCAGAGTTGCATTCCCTAGTTA 57.245 39.130 0.00 0.00 0.00 2.24
4564 5282 5.755409 TCAGAGTTGCATTCCCTAGTTAA 57.245 39.130 0.00 0.00 0.00 2.01
4566 5284 5.012664 TCAGAGTTGCATTCCCTAGTTAACA 59.987 40.000 8.61 0.00 0.00 2.41
4568 5286 5.705905 AGAGTTGCATTCCCTAGTTAACAAC 59.294 40.000 8.61 0.00 37.11 3.32
4569 5287 5.631119 AGTTGCATTCCCTAGTTAACAACT 58.369 37.500 8.61 0.00 45.40 3.16
4570 5288 5.705905 AGTTGCATTCCCTAGTTAACAACTC 59.294 40.000 8.61 0.00 41.84 3.01
4571 5289 5.499004 TGCATTCCCTAGTTAACAACTCT 57.501 39.130 8.61 0.00 41.77 3.24
4572 5290 5.488341 TGCATTCCCTAGTTAACAACTCTC 58.512 41.667 8.61 0.00 41.77 3.20
4574 5292 5.582665 GCATTCCCTAGTTAACAACTCTCTG 59.417 44.000 8.61 0.00 41.77 3.35
4575 5293 6.574465 GCATTCCCTAGTTAACAACTCTCTGA 60.574 42.308 8.61 0.00 41.77 3.27
4576 5294 5.979288 TCCCTAGTTAACAACTCTCTGAC 57.021 43.478 8.61 0.00 41.77 3.51
4577 5295 5.391256 TCCCTAGTTAACAACTCTCTGACA 58.609 41.667 8.61 0.00 41.77 3.58
4579 5297 5.336849 CCCTAGTTAACAACTCTCTGACAGG 60.337 48.000 8.61 0.00 41.77 4.00
4581 5299 5.871396 AGTTAACAACTCTCTGACAGGAA 57.129 39.130 8.61 0.00 37.02 3.36
4583 5301 5.128827 AGTTAACAACTCTCTGACAGGAACA 59.871 40.000 8.61 0.00 37.02 3.18
4620 5771 2.953821 GGTGTGGTTGCCGTCATG 59.046 61.111 0.00 0.00 0.00 3.07
4627 5778 1.271325 TGGTTGCCGTCATGTGAATCT 60.271 47.619 0.00 0.00 0.00 2.40
4657 5810 4.013050 TGTTGTCAACTGTTGATGGACAA 58.987 39.130 24.44 20.06 42.47 3.18
4665 5853 8.081633 GTCAACTGTTGATGGACAATTAAATCA 58.918 33.333 24.44 0.00 42.47 2.57
4697 5885 7.340122 TGAGACTCATGTTAATGGAGTAGAG 57.660 40.000 0.00 0.00 34.30 2.43
4698 5886 6.892456 TGAGACTCATGTTAATGGAGTAGAGT 59.108 38.462 0.00 0.00 37.76 3.24
4724 5912 6.958192 AGTTAGGTTTCAGGAGATAGGTTGTA 59.042 38.462 0.00 0.00 0.00 2.41
4725 5913 5.678955 AGGTTTCAGGAGATAGGTTGTAC 57.321 43.478 0.00 0.00 0.00 2.90
4726 5914 4.159879 AGGTTTCAGGAGATAGGTTGTACG 59.840 45.833 0.00 0.00 0.00 3.67
4727 5915 4.081807 GGTTTCAGGAGATAGGTTGTACGT 60.082 45.833 0.00 0.00 0.00 3.57
4750 5938 2.839486 TCTGTGTTGTGTCCAGGATC 57.161 50.000 0.00 0.00 0.00 3.36
4772 5961 3.465742 TGCTGGCATGAGTCTATCTTC 57.534 47.619 0.00 0.00 0.00 2.87
4811 6015 6.053632 TGATATGCTTCACCTTCTCAGAAA 57.946 37.500 0.00 0.00 0.00 2.52
4822 6026 5.747197 CACCTTCTCAGAAATTGCATAATGC 59.253 40.000 0.00 0.00 45.29 3.56
4900 6104 5.680619 TGATATAAAATCGGAGCCACAGTT 58.319 37.500 0.00 0.00 0.00 3.16
4969 6173 2.002586 ACTCTGGAAAATCGTGATGCG 58.997 47.619 0.00 0.00 43.01 4.73
4990 6201 4.555511 GCGATGGTTTGATCTTAATCTGGC 60.556 45.833 0.00 0.00 32.75 4.85
5015 6226 5.751509 ACGAAACTCGCACTATATATGCAAA 59.248 36.000 13.82 4.65 45.12 3.68
5016 6227 6.256975 ACGAAACTCGCACTATATATGCAAAA 59.743 34.615 13.82 0.00 45.12 2.44
5098 6313 4.129380 CGATGATTGGATGTTTGGCTCTA 58.871 43.478 0.00 0.00 0.00 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 9.540538 TCCTCCACATTTCATAGGAAAATAAAA 57.459 29.630 6.65 0.00 45.52 1.52
7 8 9.713684 ATCCTCCACATTTCATAGGAAAATAAA 57.286 29.630 6.65 0.00 45.52 1.40
10 11 7.946776 CCTATCCTCCACATTTCATAGGAAAAT 59.053 37.037 6.65 0.00 45.52 1.82
11 12 7.128728 TCCTATCCTCCACATTTCATAGGAAAA 59.871 37.037 6.65 0.00 45.52 2.29
12 13 6.619437 TCCTATCCTCCACATTTCATAGGAAA 59.381 38.462 4.85 4.85 46.36 3.13
13 14 6.150332 TCCTATCCTCCACATTTCATAGGAA 58.850 40.000 3.47 0.00 39.17 3.36
14 15 5.726560 TCCTATCCTCCACATTTCATAGGA 58.273 41.667 2.01 2.01 39.61 2.94
15 16 6.234177 GTTCCTATCCTCCACATTTCATAGG 58.766 44.000 0.00 0.00 35.93 2.57
16 17 6.183361 TGGTTCCTATCCTCCACATTTCATAG 60.183 42.308 0.00 0.00 0.00 2.23
17 18 5.669904 TGGTTCCTATCCTCCACATTTCATA 59.330 40.000 0.00 0.00 0.00 2.15
18 19 4.478317 TGGTTCCTATCCTCCACATTTCAT 59.522 41.667 0.00 0.00 0.00 2.57
19 20 3.849574 TGGTTCCTATCCTCCACATTTCA 59.150 43.478 0.00 0.00 0.00 2.69
20 21 4.503714 TGGTTCCTATCCTCCACATTTC 57.496 45.455 0.00 0.00 0.00 2.17
21 22 4.946160 TTGGTTCCTATCCTCCACATTT 57.054 40.909 0.00 0.00 0.00 2.32
22 23 4.141158 GGATTGGTTCCTATCCTCCACATT 60.141 45.833 19.71 0.00 41.78 2.71
23 24 3.395941 GGATTGGTTCCTATCCTCCACAT 59.604 47.826 19.71 0.00 41.78 3.21
24 25 2.777692 GGATTGGTTCCTATCCTCCACA 59.222 50.000 19.71 0.00 41.78 4.17
25 26 3.493767 GGATTGGTTCCTATCCTCCAC 57.506 52.381 19.71 0.00 41.78 4.02
59 60 6.039829 GTCCTTTGGTTCATAGGAATGGATTC 59.960 42.308 8.31 0.00 41.71 2.52
60 61 5.893824 GTCCTTTGGTTCATAGGAATGGATT 59.106 40.000 8.31 0.00 41.71 3.01
61 62 5.194537 AGTCCTTTGGTTCATAGGAATGGAT 59.805 40.000 8.31 0.00 41.71 3.41
62 63 4.540099 AGTCCTTTGGTTCATAGGAATGGA 59.460 41.667 8.31 0.00 41.71 3.41
63 64 4.860022 AGTCCTTTGGTTCATAGGAATGG 58.140 43.478 8.31 0.00 41.71 3.16
64 65 5.749462 AGAGTCCTTTGGTTCATAGGAATG 58.251 41.667 10.94 0.00 41.71 2.67
65 66 7.510675 TTAGAGTCCTTTGGTTCATAGGAAT 57.489 36.000 8.31 7.64 41.71 3.01
66 67 6.945636 TTAGAGTCCTTTGGTTCATAGGAA 57.054 37.500 8.31 0.00 41.71 3.36
67 68 6.729100 TCTTTAGAGTCCTTTGGTTCATAGGA 59.271 38.462 3.54 3.54 38.81 2.94
68 69 6.947464 TCTTTAGAGTCCTTTGGTTCATAGG 58.053 40.000 0.00 0.00 34.61 2.57
69 70 8.848474 TTTCTTTAGAGTCCTTTGGTTCATAG 57.152 34.615 0.00 0.00 0.00 2.23
70 71 9.635404 TTTTTCTTTAGAGTCCTTTGGTTCATA 57.365 29.630 0.00 0.00 0.00 2.15
71 72 8.533569 TTTTTCTTTAGAGTCCTTTGGTTCAT 57.466 30.769 0.00 0.00 0.00 2.57
72 73 7.948034 TTTTTCTTTAGAGTCCTTTGGTTCA 57.052 32.000 0.00 0.00 0.00 3.18
122 123 8.321353 GGTTTGGAGGAATTTCATAGGAATTTT 58.679 33.333 0.00 0.00 31.93 1.82
123 124 7.457535 TGGTTTGGAGGAATTTCATAGGAATTT 59.542 33.333 0.00 0.00 31.93 1.82
124 125 6.959366 TGGTTTGGAGGAATTTCATAGGAATT 59.041 34.615 0.00 0.00 31.93 2.17
125 126 6.502138 TGGTTTGGAGGAATTTCATAGGAAT 58.498 36.000 0.00 0.00 31.93 3.01
126 127 5.898120 TGGTTTGGAGGAATTTCATAGGAA 58.102 37.500 0.00 0.00 0.00 3.36
127 128 5.528600 TGGTTTGGAGGAATTTCATAGGA 57.471 39.130 0.00 0.00 0.00 2.94
128 129 6.437162 TCTTTGGTTTGGAGGAATTTCATAGG 59.563 38.462 0.00 0.00 0.00 2.57
129 130 7.466746 TCTTTGGTTTGGAGGAATTTCATAG 57.533 36.000 0.00 0.00 0.00 2.23
130 131 7.039082 CCTTCTTTGGTTTGGAGGAATTTCATA 60.039 37.037 0.00 0.00 0.00 2.15
131 132 6.239686 CCTTCTTTGGTTTGGAGGAATTTCAT 60.240 38.462 0.00 0.00 0.00 2.57
132 133 5.070313 CCTTCTTTGGTTTGGAGGAATTTCA 59.930 40.000 0.00 0.00 0.00 2.69
133 134 5.541845 CCTTCTTTGGTTTGGAGGAATTTC 58.458 41.667 0.00 0.00 0.00 2.17
134 135 4.202357 GCCTTCTTTGGTTTGGAGGAATTT 60.202 41.667 0.00 0.00 0.00 1.82
135 136 3.324846 GCCTTCTTTGGTTTGGAGGAATT 59.675 43.478 0.00 0.00 0.00 2.17
136 137 2.899900 GCCTTCTTTGGTTTGGAGGAAT 59.100 45.455 0.00 0.00 0.00 3.01
137 138 2.316108 GCCTTCTTTGGTTTGGAGGAA 58.684 47.619 0.00 0.00 0.00 3.36
138 139 1.480498 GGCCTTCTTTGGTTTGGAGGA 60.480 52.381 0.00 0.00 0.00 3.71
139 140 0.969149 GGCCTTCTTTGGTTTGGAGG 59.031 55.000 0.00 0.00 0.00 4.30
140 141 1.703411 TGGCCTTCTTTGGTTTGGAG 58.297 50.000 3.32 0.00 0.00 3.86
141 142 2.166907 TTGGCCTTCTTTGGTTTGGA 57.833 45.000 3.32 0.00 0.00 3.53
142 143 3.055891 CCTATTGGCCTTCTTTGGTTTGG 60.056 47.826 3.32 0.00 0.00 3.28
143 144 3.578282 ACCTATTGGCCTTCTTTGGTTTG 59.422 43.478 3.32 0.00 36.63 2.93
144 145 3.856900 ACCTATTGGCCTTCTTTGGTTT 58.143 40.909 3.32 0.00 36.63 3.27
145 146 3.542969 ACCTATTGGCCTTCTTTGGTT 57.457 42.857 3.32 0.00 36.63 3.67
146 147 3.053619 CCTACCTATTGGCCTTCTTTGGT 60.054 47.826 3.32 7.59 36.63 3.67
147 148 3.053619 ACCTACCTATTGGCCTTCTTTGG 60.054 47.826 3.32 1.20 36.63 3.28
148 149 4.200092 GACCTACCTATTGGCCTTCTTTG 58.800 47.826 3.32 0.00 36.63 2.77
149 150 3.850173 TGACCTACCTATTGGCCTTCTTT 59.150 43.478 3.32 0.00 36.63 2.52
150 151 3.456277 CTGACCTACCTATTGGCCTTCTT 59.544 47.826 3.32 0.00 36.63 2.52
151 152 3.041946 CTGACCTACCTATTGGCCTTCT 58.958 50.000 3.32 0.00 36.63 2.85
152 153 2.485657 GCTGACCTACCTATTGGCCTTC 60.486 54.545 3.32 0.00 36.63 3.46
153 154 1.490910 GCTGACCTACCTATTGGCCTT 59.509 52.381 3.32 0.00 36.63 4.35
154 155 1.132500 GCTGACCTACCTATTGGCCT 58.868 55.000 3.32 0.00 36.63 5.19
155 156 0.108774 GGCTGACCTACCTATTGGCC 59.891 60.000 0.00 0.00 36.63 5.36
156 157 0.108774 GGGCTGACCTACCTATTGGC 59.891 60.000 0.00 0.00 34.43 4.52
157 158 1.141053 GTGGGCTGACCTACCTATTGG 59.859 57.143 0.00 0.00 41.48 3.16
158 159 1.837439 TGTGGGCTGACCTACCTATTG 59.163 52.381 0.00 0.00 46.59 1.90
159 160 1.838077 GTGTGGGCTGACCTACCTATT 59.162 52.381 0.00 0.00 46.59 1.73
160 161 1.008449 AGTGTGGGCTGACCTACCTAT 59.992 52.381 0.00 0.00 46.59 2.57
161 162 0.412244 AGTGTGGGCTGACCTACCTA 59.588 55.000 0.00 0.00 46.59 3.08
162 163 0.905337 GAGTGTGGGCTGACCTACCT 60.905 60.000 0.00 0.00 46.59 3.08
163 164 0.905337 AGAGTGTGGGCTGACCTACC 60.905 60.000 0.00 0.00 46.59 3.18
165 166 0.114364 TCAGAGTGTGGGCTGACCTA 59.886 55.000 0.00 0.00 41.11 3.08
166 167 1.152247 TCAGAGTGTGGGCTGACCT 60.152 57.895 0.00 0.00 41.11 3.85
167 168 3.471620 TCAGAGTGTGGGCTGACC 58.528 61.111 0.00 0.00 36.31 4.02
169 170 2.574018 CGGTCAGAGTGTGGGCTGA 61.574 63.158 0.00 0.00 38.72 4.26
170 171 2.047844 CGGTCAGAGTGTGGGCTG 60.048 66.667 0.00 0.00 0.00 4.85
171 172 3.314331 CCGGTCAGAGTGTGGGCT 61.314 66.667 0.00 0.00 0.00 5.19
173 174 3.625897 TGCCGGTCAGAGTGTGGG 61.626 66.667 1.90 0.00 0.00 4.61
174 175 2.357517 GTGCCGGTCAGAGTGTGG 60.358 66.667 1.90 0.00 0.00 4.17
175 176 1.956170 GTGTGCCGGTCAGAGTGTG 60.956 63.158 1.90 0.00 0.00 3.82
176 177 1.758440 ATGTGTGCCGGTCAGAGTGT 61.758 55.000 1.90 0.00 0.00 3.55
177 178 1.004560 ATGTGTGCCGGTCAGAGTG 60.005 57.895 1.90 0.00 0.00 3.51
178 179 1.293498 GATGTGTGCCGGTCAGAGT 59.707 57.895 1.90 0.00 0.00 3.24
179 180 1.016130 GTGATGTGTGCCGGTCAGAG 61.016 60.000 1.90 0.00 0.00 3.35
180 181 1.005037 GTGATGTGTGCCGGTCAGA 60.005 57.895 1.90 1.83 0.00 3.27
181 182 0.246360 TAGTGATGTGTGCCGGTCAG 59.754 55.000 1.90 0.00 0.00 3.51
182 183 0.037697 GTAGTGATGTGTGCCGGTCA 60.038 55.000 1.90 0.00 0.00 4.02
183 184 0.037697 TGTAGTGATGTGTGCCGGTC 60.038 55.000 1.90 0.00 0.00 4.79
184 185 0.394938 TTGTAGTGATGTGTGCCGGT 59.605 50.000 1.90 0.00 0.00 5.28
185 186 0.796312 GTTGTAGTGATGTGTGCCGG 59.204 55.000 0.00 0.00 0.00 6.13
186 187 1.194547 GTGTTGTAGTGATGTGTGCCG 59.805 52.381 0.00 0.00 0.00 5.69
187 188 2.217750 TGTGTTGTAGTGATGTGTGCC 58.782 47.619 0.00 0.00 0.00 5.01
188 189 4.929211 TCTATGTGTTGTAGTGATGTGTGC 59.071 41.667 0.00 0.00 0.00 4.57
189 190 6.401474 GCTTCTATGTGTTGTAGTGATGTGTG 60.401 42.308 0.00 0.00 0.00 3.82
190 191 5.639506 GCTTCTATGTGTTGTAGTGATGTGT 59.360 40.000 0.00 0.00 0.00 3.72
191 192 5.063944 GGCTTCTATGTGTTGTAGTGATGTG 59.936 44.000 0.00 0.00 0.00 3.21
192 193 5.178797 GGCTTCTATGTGTTGTAGTGATGT 58.821 41.667 0.00 0.00 0.00 3.06
193 194 4.572389 GGGCTTCTATGTGTTGTAGTGATG 59.428 45.833 0.00 0.00 0.00 3.07
194 195 4.225042 TGGGCTTCTATGTGTTGTAGTGAT 59.775 41.667 0.00 0.00 0.00 3.06
195 196 3.580895 TGGGCTTCTATGTGTTGTAGTGA 59.419 43.478 0.00 0.00 0.00 3.41
196 197 3.937814 TGGGCTTCTATGTGTTGTAGTG 58.062 45.455 0.00 0.00 0.00 2.74
197 198 4.324267 GTTGGGCTTCTATGTGTTGTAGT 58.676 43.478 0.00 0.00 0.00 2.73
198 199 3.370978 CGTTGGGCTTCTATGTGTTGTAG 59.629 47.826 0.00 0.00 0.00 2.74
199 200 3.007074 TCGTTGGGCTTCTATGTGTTGTA 59.993 43.478 0.00 0.00 0.00 2.41
200 201 2.151202 CGTTGGGCTTCTATGTGTTGT 58.849 47.619 0.00 0.00 0.00 3.32
201 202 2.422597 TCGTTGGGCTTCTATGTGTTG 58.577 47.619 0.00 0.00 0.00 3.33
202 203 2.851263 TCGTTGGGCTTCTATGTGTT 57.149 45.000 0.00 0.00 0.00 3.32
203 204 2.699954 CTTCGTTGGGCTTCTATGTGT 58.300 47.619 0.00 0.00 0.00 3.72
204 205 1.398390 GCTTCGTTGGGCTTCTATGTG 59.602 52.381 0.00 0.00 0.00 3.21
205 206 1.279271 AGCTTCGTTGGGCTTCTATGT 59.721 47.619 0.00 0.00 34.96 2.29
206 207 1.936547 GAGCTTCGTTGGGCTTCTATG 59.063 52.381 0.00 0.00 39.05 2.23
207 208 1.555075 TGAGCTTCGTTGGGCTTCTAT 59.445 47.619 0.00 0.00 39.05 1.98
208 209 0.973632 TGAGCTTCGTTGGGCTTCTA 59.026 50.000 0.00 0.00 39.05 2.10
209 210 0.603975 GTGAGCTTCGTTGGGCTTCT 60.604 55.000 0.00 0.00 39.05 2.85
210 211 0.884704 TGTGAGCTTCGTTGGGCTTC 60.885 55.000 0.00 0.00 39.05 3.86
211 212 0.465460 TTGTGAGCTTCGTTGGGCTT 60.465 50.000 0.00 0.00 39.05 4.35
212 213 1.148273 TTGTGAGCTTCGTTGGGCT 59.852 52.632 0.00 0.00 41.88 5.19
213 214 1.282875 GTTGTGAGCTTCGTTGGGC 59.717 57.895 0.00 0.00 0.00 5.36
214 215 1.021202 TTGTTGTGAGCTTCGTTGGG 58.979 50.000 0.00 0.00 0.00 4.12
215 216 2.159448 TGTTTGTTGTGAGCTTCGTTGG 60.159 45.455 0.00 0.00 0.00 3.77
216 217 3.100817 CTGTTTGTTGTGAGCTTCGTTG 58.899 45.455 0.00 0.00 0.00 4.10
217 218 2.477863 GCTGTTTGTTGTGAGCTTCGTT 60.478 45.455 0.00 0.00 0.00 3.85
218 219 1.064060 GCTGTTTGTTGTGAGCTTCGT 59.936 47.619 0.00 0.00 0.00 3.85
219 220 1.597937 GGCTGTTTGTTGTGAGCTTCG 60.598 52.381 0.00 0.00 0.00 3.79
220 221 1.405105 TGGCTGTTTGTTGTGAGCTTC 59.595 47.619 0.00 0.00 0.00 3.86
221 222 1.473258 TGGCTGTTTGTTGTGAGCTT 58.527 45.000 0.00 0.00 0.00 3.74
222 223 1.338973 CATGGCTGTTTGTTGTGAGCT 59.661 47.619 0.00 0.00 0.00 4.09
223 224 1.774639 CATGGCTGTTTGTTGTGAGC 58.225 50.000 0.00 0.00 0.00 4.26
224 225 1.067364 TGCATGGCTGTTTGTTGTGAG 59.933 47.619 0.00 0.00 0.00 3.51
225 226 1.109609 TGCATGGCTGTTTGTTGTGA 58.890 45.000 0.00 0.00 0.00 3.58
226 227 1.937278 TTGCATGGCTGTTTGTTGTG 58.063 45.000 0.00 0.00 0.00 3.33
227 228 2.677337 GTTTTGCATGGCTGTTTGTTGT 59.323 40.909 0.00 0.00 0.00 3.32
228 229 2.937799 AGTTTTGCATGGCTGTTTGTTG 59.062 40.909 0.00 0.00 0.00 3.33
229 230 3.197265 GAGTTTTGCATGGCTGTTTGTT 58.803 40.909 0.00 0.00 0.00 2.83
230 231 2.168106 TGAGTTTTGCATGGCTGTTTGT 59.832 40.909 0.00 0.00 0.00 2.83
231 232 2.798283 CTGAGTTTTGCATGGCTGTTTG 59.202 45.455 0.00 0.00 0.00 2.93
232 233 2.804212 GCTGAGTTTTGCATGGCTGTTT 60.804 45.455 0.00 0.00 0.00 2.83
233 234 1.269936 GCTGAGTTTTGCATGGCTGTT 60.270 47.619 0.00 0.00 0.00 3.16
234 235 0.316204 GCTGAGTTTTGCATGGCTGT 59.684 50.000 0.00 0.00 0.00 4.40
235 236 0.315886 TGCTGAGTTTTGCATGGCTG 59.684 50.000 0.00 0.00 33.94 4.85
236 237 1.042229 TTGCTGAGTTTTGCATGGCT 58.958 45.000 0.00 0.00 39.07 4.75
237 238 1.142474 GTTGCTGAGTTTTGCATGGC 58.858 50.000 0.00 0.00 39.07 4.40
238 239 1.606224 GGGTTGCTGAGTTTTGCATGG 60.606 52.381 0.00 0.00 39.07 3.66
239 240 1.787012 GGGTTGCTGAGTTTTGCATG 58.213 50.000 0.00 0.00 39.07 4.06
240 241 0.314935 CGGGTTGCTGAGTTTTGCAT 59.685 50.000 0.00 0.00 39.07 3.96
241 242 1.732917 CGGGTTGCTGAGTTTTGCA 59.267 52.632 0.00 0.00 37.42 4.08
242 243 1.661509 GCGGGTTGCTGAGTTTTGC 60.662 57.895 0.00 0.00 41.73 3.68
243 244 0.102120 TTGCGGGTTGCTGAGTTTTG 59.898 50.000 0.00 0.00 46.63 2.44
244 245 0.820871 TTTGCGGGTTGCTGAGTTTT 59.179 45.000 0.00 0.00 46.63 2.43
245 246 0.820871 TTTTGCGGGTTGCTGAGTTT 59.179 45.000 0.00 0.00 46.63 2.66
246 247 0.820871 TTTTTGCGGGTTGCTGAGTT 59.179 45.000 0.00 0.00 46.63 3.01
247 248 2.499214 TTTTTGCGGGTTGCTGAGT 58.501 47.368 0.00 0.00 46.63 3.41
277 278 1.026718 ACGGATGCCTTGCAGTAAGC 61.027 55.000 0.00 0.00 43.65 3.09
278 279 1.009829 GACGGATGCCTTGCAGTAAG 58.990 55.000 0.00 0.00 43.65 2.34
279 280 0.739462 CGACGGATGCCTTGCAGTAA 60.739 55.000 0.00 0.00 43.65 2.24
280 281 1.153647 CGACGGATGCCTTGCAGTA 60.154 57.895 0.00 0.00 43.65 2.74
281 282 2.434884 CGACGGATGCCTTGCAGT 60.435 61.111 0.00 0.00 43.65 4.40
282 283 3.197790 CCGACGGATGCCTTGCAG 61.198 66.667 8.64 0.00 43.65 4.41
283 284 3.950794 GACCGACGGATGCCTTGCA 62.951 63.158 23.38 0.00 44.86 4.08
284 285 3.195698 GACCGACGGATGCCTTGC 61.196 66.667 23.38 0.00 0.00 4.01
285 286 1.519455 GAGACCGACGGATGCCTTG 60.519 63.158 23.38 0.00 0.00 3.61
286 287 1.982395 TGAGACCGACGGATGCCTT 60.982 57.895 23.38 0.00 0.00 4.35
287 288 2.362503 TGAGACCGACGGATGCCT 60.363 61.111 23.38 11.46 0.00 4.75
288 289 2.202756 GTGAGACCGACGGATGCC 60.203 66.667 23.38 7.11 0.00 4.40
289 290 1.381928 TAGGTGAGACCGACGGATGC 61.382 60.000 23.38 9.45 44.90 3.91
290 291 1.001268 CATAGGTGAGACCGACGGATG 60.001 57.143 23.38 7.23 44.90 3.51
291 292 1.319541 CATAGGTGAGACCGACGGAT 58.680 55.000 23.38 8.67 44.90 4.18
292 293 0.750546 CCATAGGTGAGACCGACGGA 60.751 60.000 23.38 0.00 44.90 4.69
293 294 1.734137 CCATAGGTGAGACCGACGG 59.266 63.158 13.61 13.61 44.90 4.79
294 295 1.734137 CCCATAGGTGAGACCGACG 59.266 63.158 0.00 0.00 44.90 5.12
295 296 0.396695 TCCCCATAGGTGAGACCGAC 60.397 60.000 0.00 0.00 44.90 4.79
296 297 0.396695 GTCCCCATAGGTGAGACCGA 60.397 60.000 0.00 0.00 44.90 4.69
297 298 1.735376 CGTCCCCATAGGTGAGACCG 61.735 65.000 0.00 0.00 44.90 4.79
298 299 0.396695 TCGTCCCCATAGGTGAGACC 60.397 60.000 0.00 0.00 38.99 3.85
299 300 0.745468 GTCGTCCCCATAGGTGAGAC 59.255 60.000 0.00 0.00 36.75 3.36
300 301 0.750546 CGTCGTCCCCATAGGTGAGA 60.751 60.000 0.00 0.00 36.75 3.27
301 302 0.750546 TCGTCGTCCCCATAGGTGAG 60.751 60.000 0.00 0.00 36.75 3.51
302 303 0.323633 TTCGTCGTCCCCATAGGTGA 60.324 55.000 0.00 0.00 36.75 4.02
303 304 0.102481 CTTCGTCGTCCCCATAGGTG 59.898 60.000 0.00 0.00 36.75 4.00
304 305 0.324091 ACTTCGTCGTCCCCATAGGT 60.324 55.000 0.00 0.00 36.75 3.08
305 306 0.102481 CACTTCGTCGTCCCCATAGG 59.898 60.000 0.00 0.00 0.00 2.57
306 307 0.815734 ACACTTCGTCGTCCCCATAG 59.184 55.000 0.00 0.00 0.00 2.23
307 308 0.528924 CACACTTCGTCGTCCCCATA 59.471 55.000 0.00 0.00 0.00 2.74
308 309 1.292223 CACACTTCGTCGTCCCCAT 59.708 57.895 0.00 0.00 0.00 4.00
309 310 2.732016 CACACTTCGTCGTCCCCA 59.268 61.111 0.00 0.00 0.00 4.96
310 311 2.737376 GCACACTTCGTCGTCCCC 60.737 66.667 0.00 0.00 0.00 4.81
311 312 2.022129 CAGCACACTTCGTCGTCCC 61.022 63.158 0.00 0.00 0.00 4.46
312 313 2.022129 CCAGCACACTTCGTCGTCC 61.022 63.158 0.00 0.00 0.00 4.79
313 314 2.658707 GCCAGCACACTTCGTCGTC 61.659 63.158 0.00 0.00 0.00 4.20
314 315 2.661866 GCCAGCACACTTCGTCGT 60.662 61.111 0.00 0.00 0.00 4.34
315 316 2.356313 AGCCAGCACACTTCGTCG 60.356 61.111 0.00 0.00 0.00 5.12
316 317 0.880278 TTCAGCCAGCACACTTCGTC 60.880 55.000 0.00 0.00 0.00 4.20
317 318 0.250467 ATTCAGCCAGCACACTTCGT 60.250 50.000 0.00 0.00 0.00 3.85
318 319 1.725641 TATTCAGCCAGCACACTTCG 58.274 50.000 0.00 0.00 0.00 3.79
319 320 3.077359 ACTTATTCAGCCAGCACACTTC 58.923 45.455 0.00 0.00 0.00 3.01
320 321 2.816087 CACTTATTCAGCCAGCACACTT 59.184 45.455 0.00 0.00 0.00 3.16
321 322 2.224621 ACACTTATTCAGCCAGCACACT 60.225 45.455 0.00 0.00 0.00 3.55
322 323 2.095567 CACACTTATTCAGCCAGCACAC 60.096 50.000 0.00 0.00 0.00 3.82
323 324 2.153645 CACACTTATTCAGCCAGCACA 58.846 47.619 0.00 0.00 0.00 4.57
324 325 2.426522 TCACACTTATTCAGCCAGCAC 58.573 47.619 0.00 0.00 0.00 4.40
325 326 2.857186 TCACACTTATTCAGCCAGCA 57.143 45.000 0.00 0.00 0.00 4.41
326 327 3.561725 GGTATCACACTTATTCAGCCAGC 59.438 47.826 0.00 0.00 0.00 4.85
327 328 3.804325 CGGTATCACACTTATTCAGCCAG 59.196 47.826 0.00 0.00 0.00 4.85
328 329 3.449377 TCGGTATCACACTTATTCAGCCA 59.551 43.478 0.00 0.00 0.00 4.75
329 330 4.051922 CTCGGTATCACACTTATTCAGCC 58.948 47.826 0.00 0.00 0.00 4.85
330 331 3.491267 GCTCGGTATCACACTTATTCAGC 59.509 47.826 0.00 0.00 0.00 4.26
331 332 4.051922 GGCTCGGTATCACACTTATTCAG 58.948 47.826 0.00 0.00 0.00 3.02
332 333 3.704566 AGGCTCGGTATCACACTTATTCA 59.295 43.478 0.00 0.00 0.00 2.57
333 334 4.323553 AGGCTCGGTATCACACTTATTC 57.676 45.455 0.00 0.00 0.00 1.75
334 335 4.755266 AAGGCTCGGTATCACACTTATT 57.245 40.909 0.00 0.00 0.00 1.40
335 336 4.755266 AAAGGCTCGGTATCACACTTAT 57.245 40.909 0.00 0.00 0.00 1.73
368 369 1.226746 GTTCCACGAACCTGTCTTGG 58.773 55.000 0.00 0.00 45.19 3.61
437 439 8.474577 CAAAAGAAAAATCGATGAAGAACACAG 58.525 33.333 0.00 0.00 0.00 3.66
580 583 9.719279 AATGTGCATTTTACAAAAATGTTCAAG 57.281 25.926 20.36 1.88 39.25 3.02
759 763 9.046296 TGTCCACGTAATTTGCAAAAATAAAAT 57.954 25.926 17.19 0.00 0.00 1.82
760 764 8.420374 TGTCCACGTAATTTGCAAAAATAAAA 57.580 26.923 17.19 0.00 0.00 1.52
761 765 8.420374 TTGTCCACGTAATTTGCAAAAATAAA 57.580 26.923 17.19 0.00 0.00 1.40
762 766 8.594881 ATTGTCCACGTAATTTGCAAAAATAA 57.405 26.923 17.19 0.00 0.00 1.40
763 767 9.130312 GTATTGTCCACGTAATTTGCAAAAATA 57.870 29.630 17.19 9.78 0.00 1.40
764 768 7.653713 TGTATTGTCCACGTAATTTGCAAAAAT 59.346 29.630 17.19 10.82 0.00 1.82
902 909 1.957177 TCATGTTGGCGGCTTTTACAA 59.043 42.857 11.43 0.00 0.00 2.41
1381 1388 4.339814 ACCTACAGAAATCCGTCTCATCTC 59.660 45.833 0.00 0.00 0.00 2.75
1388 1395 3.522553 CAAGGACCTACAGAAATCCGTC 58.477 50.000 0.00 0.00 36.28 4.79
1517 1524 2.289882 TGAGCTCCAACTGAATGTCCAG 60.290 50.000 12.15 0.00 39.93 3.86
1529 1544 2.224621 CCTCCACTTTCTTGAGCTCCAA 60.225 50.000 12.15 4.89 0.00 3.53
1702 1719 7.009723 ACACGAAAACCAAAATAACATCAACAC 59.990 33.333 0.00 0.00 0.00 3.32
1724 1741 0.606401 ATCTGCACCCAAGGAACACG 60.606 55.000 0.00 0.00 0.00 4.49
1729 1746 1.361204 TCAGAATCTGCACCCAAGGA 58.639 50.000 5.18 0.00 0.00 3.36
1736 1753 2.996249 TCCAGGATCAGAATCTGCAC 57.004 50.000 5.18 1.90 32.12 4.57
1888 1905 0.991920 TCACAGGATTCCTCAACCCC 59.008 55.000 0.98 0.00 0.00 4.95
1944 1961 1.064463 TGGATGGACCAAGATCTTGCC 60.064 52.381 27.01 23.00 46.75 4.52
1998 2015 4.499019 CCAACGGTTGTACAAAAGCATCTT 60.499 41.667 18.73 0.00 0.00 2.40
2053 2070 7.355101 ACCATAAGAGGTCTACTGTAATCAGA 58.645 38.462 2.17 0.00 39.80 3.27
2128 2145 8.830580 ACATATCATATACTGCACAGAAACAAC 58.169 33.333 4.31 0.00 0.00 3.32
2474 2491 6.757010 ACGAAAGTATGTCAGTATAAAGCCAG 59.243 38.462 0.00 0.00 46.88 4.85
2666 2687 4.499357 CGAAGGGTAAGACCATAGCACTAC 60.499 50.000 0.00 0.00 41.02 2.73
2867 3055 8.907685 CCACCAACTTGTAATTAAACATAAACG 58.092 33.333 0.00 0.00 0.00 3.60
2927 3115 1.166531 AACAAGACAGCCAACGGAGC 61.167 55.000 0.00 0.00 0.00 4.70
2928 3116 0.588252 CAACAAGACAGCCAACGGAG 59.412 55.000 0.00 0.00 0.00 4.63
2931 3119 2.097466 ACTTTCAACAAGACAGCCAACG 59.903 45.455 0.00 0.00 0.00 4.10
2998 3188 5.535030 AGGAACACCTCGAAGCTTTAAAAAT 59.465 36.000 0.00 0.00 0.00 1.82
3102 3292 8.722721 CTTGGCTCAAGTGGGGACCTAAATAA 62.723 46.154 6.74 0.00 40.25 1.40
3103 3293 7.335197 CTTGGCTCAAGTGGGGACCTAAATA 62.335 48.000 6.74 0.00 40.25 1.40
3148 3338 7.440809 GACATTAGTCAGTAGTCAGCATGAGC 61.441 46.154 0.00 0.00 45.44 4.26
3149 3339 5.976534 GACATTAGTCAGTAGTCAGCATGAG 59.023 44.000 0.00 0.00 45.44 2.90
3175 3365 3.754965 TCTAATCTGCAGCACAAAGGTT 58.245 40.909 9.47 0.00 0.00 3.50
3479 3669 0.962356 AAAATGGGCCAGCTGAGACG 60.962 55.000 17.39 0.00 0.00 4.18
3618 3811 9.090692 CATCCAAACATATGAAAGGAATTTGAC 57.909 33.333 10.38 0.00 0.00 3.18
3654 3847 6.493802 CCCCACTGCTGATACTAGATAAACTA 59.506 42.308 0.00 0.00 0.00 2.24
3693 3891 1.102154 CCTGCAGTGAACCAACACAA 58.898 50.000 13.81 0.00 42.45 3.33
3868 4066 2.092538 CAGCTCATCCATGTCCTCCTTT 60.093 50.000 0.00 0.00 0.00 3.11
3892 4090 0.896940 TCAGGAGGCGGTACTCGTTT 60.897 55.000 5.79 0.00 41.72 3.60
3937 4135 2.415857 GAGCTTCTCGTACTCGTCTTCA 59.584 50.000 0.00 0.00 38.33 3.02
4136 4334 3.855950 GCAAAATCTCTTCCAAAGATGCG 59.144 43.478 0.00 0.00 36.82 4.73
4138 4336 5.047519 ACTGGCAAAATCTCTTCCAAAGATG 60.048 40.000 0.00 0.00 36.82 2.90
4151 4349 6.822073 AAAACGAACTAAACTGGCAAAATC 57.178 33.333 0.00 0.00 0.00 2.17
4188 4386 5.827666 TGTTTCTTCTCCGGTGAAAATTTC 58.172 37.500 18.83 9.73 32.50 2.17
4191 4389 4.321230 GCATGTTTCTTCTCCGGTGAAAAT 60.321 41.667 18.83 6.38 32.50 1.82
4192 4390 3.004315 GCATGTTTCTTCTCCGGTGAAAA 59.996 43.478 18.83 13.05 32.50 2.29
4202 4400 3.016064 TGGCACAAGGCATGTTTCTTCT 61.016 45.455 0.00 0.00 46.46 2.85
4319 4542 7.004086 TGACACACAAGATCCCTTCTATTTTT 58.996 34.615 0.00 0.00 33.05 1.94
4320 4543 6.542821 TGACACACAAGATCCCTTCTATTTT 58.457 36.000 0.00 0.00 33.05 1.82
4321 4544 6.126863 TGACACACAAGATCCCTTCTATTT 57.873 37.500 0.00 0.00 33.05 1.40
4322 4545 5.762179 TGACACACAAGATCCCTTCTATT 57.238 39.130 0.00 0.00 33.05 1.73
4323 4546 5.965033 ATGACACACAAGATCCCTTCTAT 57.035 39.130 0.00 0.00 33.05 1.98
4324 4547 5.624509 CGAATGACACACAAGATCCCTTCTA 60.625 44.000 0.00 0.00 33.05 2.10
4325 4548 4.583871 GAATGACACACAAGATCCCTTCT 58.416 43.478 0.00 0.00 35.70 2.85
4326 4549 3.372206 CGAATGACACACAAGATCCCTTC 59.628 47.826 0.00 0.00 0.00 3.46
4327 4550 3.007940 TCGAATGACACACAAGATCCCTT 59.992 43.478 0.00 0.00 0.00 3.95
4328 4551 2.567169 TCGAATGACACACAAGATCCCT 59.433 45.455 0.00 0.00 0.00 4.20
4329 4552 2.972625 TCGAATGACACACAAGATCCC 58.027 47.619 0.00 0.00 0.00 3.85
4330 4553 4.213270 TGTTTCGAATGACACACAAGATCC 59.787 41.667 0.00 0.00 30.09 3.36
4331 4554 5.342806 TGTTTCGAATGACACACAAGATC 57.657 39.130 0.00 0.00 30.09 2.75
4332 4555 5.749596 TTGTTTCGAATGACACACAAGAT 57.250 34.783 0.00 0.00 34.66 2.40
4333 4556 5.553290 TTTGTTTCGAATGACACACAAGA 57.447 34.783 9.91 1.85 34.66 3.02
4334 4557 6.624710 TTTTTGTTTCGAATGACACACAAG 57.375 33.333 9.91 0.00 34.66 3.16
4393 4616 3.118112 AGCTTCATCCTGGTCTGTTATGG 60.118 47.826 0.00 0.00 0.00 2.74
4421 4644 4.559153 CATGACCTCCGAAATTGCTTTTT 58.441 39.130 0.00 0.00 0.00 1.94
4497 4720 1.229788 AGCCTCCAAGCTTCTCCCT 60.230 57.895 0.00 0.00 41.41 4.20
4531 4754 7.446625 GGGAATGCAACTCTGAATCTATGTTAT 59.553 37.037 0.00 0.00 0.00 1.89
4550 5268 5.582665 CAGAGAGTTGTTAACTAGGGAATGC 59.417 44.000 7.22 0.00 43.03 3.56
4551 5269 6.814146 GTCAGAGAGTTGTTAACTAGGGAATG 59.186 42.308 7.22 0.00 43.03 2.67
4553 5271 5.836898 TGTCAGAGAGTTGTTAACTAGGGAA 59.163 40.000 7.22 0.00 43.03 3.97
4554 5272 5.391256 TGTCAGAGAGTTGTTAACTAGGGA 58.609 41.667 7.22 0.00 43.03 4.20
4555 5273 5.336849 CCTGTCAGAGAGTTGTTAACTAGGG 60.337 48.000 7.22 0.00 43.03 3.53
4556 5274 5.477291 TCCTGTCAGAGAGTTGTTAACTAGG 59.523 44.000 7.22 0.00 43.03 3.02
4557 5275 6.576662 TCCTGTCAGAGAGTTGTTAACTAG 57.423 41.667 7.22 0.00 43.03 2.57
4558 5276 6.322969 TGTTCCTGTCAGAGAGTTGTTAACTA 59.677 38.462 7.22 0.00 43.03 2.24
4559 5277 5.128827 TGTTCCTGTCAGAGAGTTGTTAACT 59.871 40.000 7.22 0.00 46.38 2.24
4560 5278 5.357257 TGTTCCTGTCAGAGAGTTGTTAAC 58.643 41.667 0.00 0.00 0.00 2.01
4561 5279 5.601662 CTGTTCCTGTCAGAGAGTTGTTAA 58.398 41.667 0.00 0.00 35.20 2.01
4562 5280 4.501571 GCTGTTCCTGTCAGAGAGTTGTTA 60.502 45.833 0.00 0.00 35.20 2.41
4563 5281 3.742640 GCTGTTCCTGTCAGAGAGTTGTT 60.743 47.826 0.00 0.00 35.20 2.83
4564 5282 2.224161 GCTGTTCCTGTCAGAGAGTTGT 60.224 50.000 0.00 0.00 35.20 3.32
4566 5284 2.036992 CTGCTGTTCCTGTCAGAGAGTT 59.963 50.000 0.00 0.00 35.20 3.01
4568 5286 1.672441 GCTGCTGTTCCTGTCAGAGAG 60.672 57.143 0.00 0.00 35.20 3.20
4569 5287 0.319728 GCTGCTGTTCCTGTCAGAGA 59.680 55.000 0.00 0.00 35.20 3.10
4570 5288 0.034476 TGCTGCTGTTCCTGTCAGAG 59.966 55.000 0.00 0.00 35.20 3.35
4571 5289 0.034476 CTGCTGCTGTTCCTGTCAGA 59.966 55.000 0.00 0.00 35.20 3.27
4572 5290 1.575576 GCTGCTGCTGTTCCTGTCAG 61.576 60.000 8.53 0.00 36.03 3.51
4574 5292 1.575576 CTGCTGCTGCTGTTCCTGTC 61.576 60.000 17.00 0.00 40.48 3.51
4575 5293 1.600076 CTGCTGCTGCTGTTCCTGT 60.600 57.895 17.00 0.00 40.48 4.00
4576 5294 2.979197 GCTGCTGCTGCTGTTCCTG 61.979 63.158 22.10 3.65 39.81 3.86
4577 5295 2.672307 GCTGCTGCTGCTGTTCCT 60.672 61.111 22.10 0.00 39.81 3.36
4595 5735 4.920112 CAACCACACCGCACGGGA 62.920 66.667 14.51 0.00 39.97 5.14
4603 5754 1.896660 ACATGACGGCAACCACACC 60.897 57.895 0.00 0.00 0.00 4.16
4607 5758 1.164411 GATTCACATGACGGCAACCA 58.836 50.000 0.00 0.00 0.00 3.67
4608 5759 1.453155 AGATTCACATGACGGCAACC 58.547 50.000 0.00 0.00 0.00 3.77
4615 5766 6.425114 ACAACACTCTTGTAGATTCACATGAC 59.575 38.462 0.00 0.00 33.55 3.06
4617 5768 6.424812 TGACAACACTCTTGTAGATTCACATG 59.575 38.462 0.00 0.00 33.55 3.21
4618 5769 6.524734 TGACAACACTCTTGTAGATTCACAT 58.475 36.000 0.00 0.00 33.55 3.21
4620 5771 6.480320 AGTTGACAACACTCTTGTAGATTCAC 59.520 38.462 20.08 0.00 33.55 3.18
4627 5778 5.483811 TCAACAGTTGACAACACTCTTGTA 58.516 37.500 20.08 0.00 32.06 2.41
4690 5878 7.111466 TCTCCTGAAACCTAACTACTCTACTC 58.889 42.308 0.00 0.00 0.00 2.59
4697 5885 7.093421 ACAACCTATCTCCTGAAACCTAACTAC 60.093 40.741 0.00 0.00 0.00 2.73
4698 5886 6.958192 ACAACCTATCTCCTGAAACCTAACTA 59.042 38.462 0.00 0.00 0.00 2.24
4724 5912 2.626266 TGGACACAACACAGATAGACGT 59.374 45.455 0.00 0.00 0.00 4.34
4725 5913 3.245797 CTGGACACAACACAGATAGACG 58.754 50.000 0.00 0.00 34.21 4.18
4726 5914 3.258372 TCCTGGACACAACACAGATAGAC 59.742 47.826 0.00 0.00 34.21 2.59
4727 5915 3.506398 TCCTGGACACAACACAGATAGA 58.494 45.455 0.00 0.00 34.21 1.98
4733 5921 2.781923 CATGATCCTGGACACAACACA 58.218 47.619 0.00 0.00 0.00 3.72
4772 5961 5.049198 AGCATATCATATGAAAACGCAGGTG 60.049 40.000 9.99 0.47 0.00 4.00
4822 6026 8.723942 AAAGTAGAAGTATCAGCCATGTTAAG 57.276 34.615 0.00 0.00 0.00 1.85
4879 6083 5.760253 CAGAACTGTGGCTCCGATTTTATAT 59.240 40.000 0.00 0.00 0.00 0.86
4900 6104 3.054139 CAGATCCATGGAGGGAAAACAGA 60.054 47.826 21.33 0.00 41.12 3.41
4969 6173 5.504665 CGTGCCAGATTAAGATCAAACCATC 60.505 44.000 0.00 0.00 34.60 3.51
4990 6201 4.679654 TGCATATATAGTGCGAGTTTCGTG 59.320 41.667 7.99 0.00 45.37 4.35
5015 6226 1.134175 CCGACAGGTGCAAAAACAGTT 59.866 47.619 0.00 0.00 0.00 3.16
5016 6227 0.738389 CCGACAGGTGCAAAAACAGT 59.262 50.000 0.00 0.00 0.00 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.