Multiple sequence alignment - TraesCS3A01G098900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G098900 chr3A 100.000 5907 0 0 1 5907 63904791 63910697 0.000000e+00 10909
1 TraesCS3A01G098900 chr3D 95.013 5534 193 22 1 5495 51038375 51043864 0.000000e+00 8613
2 TraesCS3A01G098900 chr3B 94.803 4272 154 22 48 4278 81812964 81817208 0.000000e+00 6597
3 TraesCS3A01G098900 chr3B 88.961 1078 67 15 4402 5475 81817504 81818533 0.000000e+00 1284
4 TraesCS3A01G098900 chr3B 89.078 412 39 5 5496 5901 765087210 765087621 1.900000e-139 507
5 TraesCS3A01G098900 chr5A 95.122 410 16 4 5496 5903 46498245 46498652 1.390000e-180 643
6 TraesCS3A01G098900 chr5D 91.262 412 32 4 5493 5901 47520262 47520672 5.170000e-155 558
7 TraesCS3A01G098900 chr4A 91.852 405 25 5 5493 5896 312883576 312883973 5.170000e-155 558
8 TraesCS3A01G098900 chr2A 90.998 411 28 8 5496 5901 744374225 744373819 4.030000e-151 545
9 TraesCS3A01G098900 chr2A 90.244 410 31 6 5496 5901 214425909 214425505 1.460000e-145 527
10 TraesCS3A01G098900 chr1A 88.916 415 36 9 5495 5905 500075966 500075558 2.460000e-138 503
11 TraesCS3A01G098900 chr1A 72.157 510 115 21 3006 3499 112038384 112037886 4.800000e-26 130
12 TraesCS3A01G098900 chr6A 88.835 412 38 7 5496 5902 142077374 142076966 3.180000e-137 499
13 TraesCS3A01G098900 chr1B 88.729 417 34 11 5492 5901 352878138 352877728 1.140000e-136 497
14 TraesCS3A01G098900 chr1B 72.495 509 112 23 3006 3499 164711460 164710965 7.980000e-29 139
15 TraesCS3A01G098900 chr1D 72.353 510 114 21 3006 3499 108832553 108832055 1.030000e-27 135


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G098900 chr3A 63904791 63910697 5906 False 10909.0 10909 100.000 1 5907 1 chr3A.!!$F1 5906
1 TraesCS3A01G098900 chr3D 51038375 51043864 5489 False 8613.0 8613 95.013 1 5495 1 chr3D.!!$F1 5494
2 TraesCS3A01G098900 chr3B 81812964 81818533 5569 False 3940.5 6597 91.882 48 5475 2 chr3B.!!$F2 5427

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
216 217 0.036164 TGATGTTGTTGGCGCCTAGT 59.964 50.000 29.70 6.36 0.00 2.57 F
999 1053 0.182537 TGTTGCTGCAGTACACCCTT 59.817 50.000 16.64 0.00 0.00 3.95 F
1873 1949 1.128692 CTGTTCCAAACGAGCGGAATC 59.871 52.381 7.30 3.63 43.03 2.52 F
2262 2338 0.253347 AGGAGAAGGCCCAATCCTCA 60.253 55.000 13.24 0.00 37.66 3.86 F
3108 3185 0.605083 CAGCAGACAGACTAGTGCCA 59.395 55.000 0.00 0.00 36.54 4.92 F
3369 3446 0.037447 AAGGAAGTCTTGCTGGAGCC 59.963 55.000 7.45 0.00 41.18 4.70 F
4302 4388 0.474854 TTACTGTCCTGGGGGAAGCA 60.475 55.000 0.00 0.00 44.15 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1878 1954 0.888619 CAACGAGAGCAGGAGGTACA 59.111 55.000 0.00 0.0 0.00 2.90 R
1893 1969 1.082756 GTTTGGAGCAGCGTCAACG 60.083 57.895 0.00 0.0 43.27 4.10 R
3108 3185 0.252479 CTGAGCTCATTGGCCTCAGT 59.748 55.000 18.63 0.0 35.20 3.41 R
3183 3260 1.598962 CCATGAATCGCCATCGCCT 60.599 57.895 0.00 0.0 35.26 5.52 R
4317 4403 1.010793 AGAGAGAGAGAGGGAGGGAGA 59.989 57.143 0.00 0.0 0.00 3.71 R
4318 4404 1.421646 GAGAGAGAGAGAGGGAGGGAG 59.578 61.905 0.00 0.0 0.00 4.30 R
5515 5777 0.036010 ACCAAGAGCAATGGAGACCG 60.036 55.000 9.15 0.0 40.56 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.388841 AGGTTGAGGGTAGGCGTG 58.611 61.111 0.00 0.00 0.00 5.34
20 21 1.448013 GTTGAGGGTAGGCGTGCTC 60.448 63.158 0.00 0.00 0.00 4.26
204 205 1.469703 TCGCTGCCATTTCTGATGTTG 59.530 47.619 0.00 0.00 0.00 3.33
216 217 0.036164 TGATGTTGTTGGCGCCTAGT 59.964 50.000 29.70 6.36 0.00 2.57
232 233 2.100916 CCTAGTAACCGTGTGGGATCTG 59.899 54.545 0.00 0.00 40.75 2.90
257 259 1.489230 GTCAGGGTTTATGGGGACGAT 59.511 52.381 0.00 0.00 0.00 3.73
335 337 1.459592 CTGTCGAAACACGTCCATTCC 59.540 52.381 0.00 0.00 43.13 3.01
555 565 2.810650 CGAGGTAGCTCGCTGTAATTT 58.189 47.619 29.05 0.00 40.05 1.82
556 566 3.187700 CGAGGTAGCTCGCTGTAATTTT 58.812 45.455 29.05 0.00 40.05 1.82
557 567 3.617263 CGAGGTAGCTCGCTGTAATTTTT 59.383 43.478 29.05 0.00 40.05 1.94
627 637 1.470098 GTTGCTCCGATTGCACATCTT 59.530 47.619 0.00 0.00 40.40 2.40
640 650 4.873817 TGCACATCTTGTGGAATTTCTTG 58.126 39.130 9.48 0.00 45.65 3.02
664 693 1.401931 GCTGCAGGCAGTGTTTGTATG 60.402 52.381 21.19 0.00 45.24 2.39
665 694 1.200716 CTGCAGGCAGTGTTTGTATGG 59.799 52.381 13.02 0.00 39.10 2.74
666 695 1.247567 GCAGGCAGTGTTTGTATGGT 58.752 50.000 0.00 0.00 0.00 3.55
667 696 1.068333 GCAGGCAGTGTTTGTATGGTG 60.068 52.381 0.00 0.00 0.00 4.17
668 697 1.068333 CAGGCAGTGTTTGTATGGTGC 60.068 52.381 0.00 0.00 0.00 5.01
669 698 0.243636 GGCAGTGTTTGTATGGTGCC 59.756 55.000 0.00 0.00 43.43 5.01
670 699 0.243636 GCAGTGTTTGTATGGTGCCC 59.756 55.000 0.00 0.00 0.00 5.36
671 700 1.909700 CAGTGTTTGTATGGTGCCCT 58.090 50.000 0.00 0.00 0.00 5.19
672 701 2.238521 CAGTGTTTGTATGGTGCCCTT 58.761 47.619 0.00 0.00 0.00 3.95
673 702 2.030007 CAGTGTTTGTATGGTGCCCTTG 60.030 50.000 0.00 0.00 0.00 3.61
674 703 2.158534 AGTGTTTGTATGGTGCCCTTGA 60.159 45.455 0.00 0.00 0.00 3.02
675 704 2.625790 GTGTTTGTATGGTGCCCTTGAA 59.374 45.455 0.00 0.00 0.00 2.69
676 705 3.068873 GTGTTTGTATGGTGCCCTTGAAA 59.931 43.478 0.00 0.00 0.00 2.69
677 706 3.900601 TGTTTGTATGGTGCCCTTGAAAT 59.099 39.130 0.00 0.00 0.00 2.17
678 707 4.346418 TGTTTGTATGGTGCCCTTGAAATT 59.654 37.500 0.00 0.00 0.00 1.82
679 708 5.163258 TGTTTGTATGGTGCCCTTGAAATTT 60.163 36.000 0.00 0.00 0.00 1.82
680 709 5.559148 TTGTATGGTGCCCTTGAAATTTT 57.441 34.783 0.00 0.00 0.00 1.82
681 710 6.672266 TTGTATGGTGCCCTTGAAATTTTA 57.328 33.333 0.00 0.00 0.00 1.52
682 711 6.865834 TGTATGGTGCCCTTGAAATTTTAT 57.134 33.333 0.00 0.00 0.00 1.40
765 794 5.762179 ACAGTCTTCTACATTCCCATTGA 57.238 39.130 0.00 0.00 0.00 2.57
774 827 6.122277 TCTACATTCCCATTGATCTGGTTTC 58.878 40.000 0.00 0.00 34.23 2.78
875 929 6.434340 TGGTACGATCTTGCTGTCAGATATAT 59.566 38.462 3.32 0.00 0.00 0.86
927 981 6.486253 TGATCACTAGTTTCAGATTTGTGC 57.514 37.500 0.00 0.00 0.00 4.57
997 1051 1.028905 TTTGTTGCTGCAGTACACCC 58.971 50.000 16.64 0.00 0.00 4.61
999 1053 0.182537 TGTTGCTGCAGTACACCCTT 59.817 50.000 16.64 0.00 0.00 3.95
1001 1055 2.039746 TGTTGCTGCAGTACACCCTTAT 59.960 45.455 16.64 0.00 0.00 1.73
1016 1070 7.696992 ACACCCTTATGTTTACTAATGGTTG 57.303 36.000 0.00 0.00 28.31 3.77
1017 1071 7.235804 ACACCCTTATGTTTACTAATGGTTGT 58.764 34.615 0.00 0.00 28.31 3.32
1018 1072 7.726738 ACACCCTTATGTTTACTAATGGTTGTT 59.273 33.333 0.00 0.00 28.31 2.83
1019 1073 8.026607 CACCCTTATGTTTACTAATGGTTGTTG 58.973 37.037 0.00 0.00 28.31 3.33
1020 1074 7.726738 ACCCTTATGTTTACTAATGGTTGTTGT 59.273 33.333 0.00 0.00 0.00 3.32
1021 1075 8.581578 CCCTTATGTTTACTAATGGTTGTTGTT 58.418 33.333 0.00 0.00 0.00 2.83
1022 1076 9.974980 CCTTATGTTTACTAATGGTTGTTGTTT 57.025 29.630 0.00 0.00 0.00 2.83
1038 1092 6.551385 TGTTGTTTTCTGTTTTGTGCATTT 57.449 29.167 0.00 0.00 0.00 2.32
1093 1147 1.478510 AGGCAGAGACCTACAATGTCG 59.521 52.381 0.00 0.00 38.67 4.35
1296 1350 9.715123 TTGCAATTTCGTTACAGTGAATATATG 57.285 29.630 0.00 0.00 0.00 1.78
1319 1373 6.413892 TGTTGCTGACATCATATCTTGGTTA 58.586 36.000 0.00 0.00 32.00 2.85
1342 1396 5.722021 ATTTTCGGAACATTAGCCTGTTT 57.278 34.783 0.00 0.00 39.40 2.83
1346 1400 2.348666 CGGAACATTAGCCTGTTTCTCG 59.651 50.000 0.00 1.77 39.40 4.04
1350 1404 4.207891 ACATTAGCCTGTTTCTCGTCAT 57.792 40.909 0.00 0.00 0.00 3.06
1378 1432 4.439057 TGTTGAACTGCTCGTTAACTTCT 58.561 39.130 3.71 0.00 35.56 2.85
1477 1535 5.239525 ACTGCCTCTGTTTCTGTTCAATTAC 59.760 40.000 0.00 0.00 0.00 1.89
1582 1640 6.774673 TGGTAGAACAAAGACACAATATCCA 58.225 36.000 0.00 0.00 0.00 3.41
1759 1835 8.418662 AGAACATATACAAAGGCGTGATTAGTA 58.581 33.333 0.00 0.00 0.00 1.82
1873 1949 1.128692 CTGTTCCAAACGAGCGGAATC 59.871 52.381 7.30 3.63 43.03 2.52
1878 1954 2.076863 CCAAACGAGCGGAATCTTTCT 58.923 47.619 0.00 0.00 0.00 2.52
1892 1968 3.176924 TCTTTCTGTACCTCCTGCTCT 57.823 47.619 0.00 0.00 0.00 4.09
1893 1969 3.093057 TCTTTCTGTACCTCCTGCTCTC 58.907 50.000 0.00 0.00 0.00 3.20
1970 2046 3.649986 ACAGCTTGTTCGTGGCGC 61.650 61.111 0.00 0.00 0.00 6.53
2013 2089 1.238439 CGGATGGTGAACAGTTTGCT 58.762 50.000 0.00 0.00 0.00 3.91
2114 2190 3.054139 TCTTCTGAGTGGGATGATTTGGG 60.054 47.826 0.00 0.00 0.00 4.12
2257 2333 2.685999 GGCAGGAGAAGGCCCAAT 59.314 61.111 0.00 0.00 44.53 3.16
2262 2338 0.253347 AGGAGAAGGCCCAATCCTCA 60.253 55.000 13.24 0.00 37.66 3.86
2290 2366 4.318332 TGCTGTTGATTCTACTTCAGGTG 58.682 43.478 0.17 0.00 0.00 4.00
2294 2370 5.305585 TGTTGATTCTACTTCAGGTGGAAC 58.694 41.667 0.00 0.00 45.63 3.62
2316 2392 4.593206 ACCAGACTTCAAGAATCACCACTA 59.407 41.667 0.00 0.00 0.00 2.74
2399 2475 0.877071 AGCACATCCTTTGAGCAACG 59.123 50.000 0.00 0.00 43.55 4.10
2431 2507 2.936919 TGAGGTGCCCTATGCTATTG 57.063 50.000 0.00 0.00 42.00 1.90
2459 2535 4.843728 TCTTGATTACCTGTTGCCCTTAG 58.156 43.478 0.00 0.00 0.00 2.18
2527 2603 9.414295 GTAATATTCCGTATGCACACACTTATA 57.586 33.333 0.00 0.00 0.00 0.98
2652 2728 5.033589 TGAACTTTTGGGTGCAAATCATT 57.966 34.783 0.00 0.00 0.00 2.57
2681 2757 9.255304 CTGCTGGAGAAGAAAGTATAAATAGAC 57.745 37.037 0.00 0.00 0.00 2.59
2683 2759 8.136165 GCTGGAGAAGAAAGTATAAATAGACGA 58.864 37.037 0.00 0.00 0.00 4.20
2848 2925 1.837439 TCGGTATGCATTCCCTCTGTT 59.163 47.619 15.96 0.00 0.00 3.16
2885 2962 3.003482 GCATTCCAGATTGAGTCAGATGC 59.997 47.826 0.00 0.00 0.00 3.91
3051 3128 4.508331 TCCTAATAGGTGGCCATAATGGA 58.492 43.478 9.72 8.16 36.74 3.41
3108 3185 0.605083 CAGCAGACAGACTAGTGCCA 59.395 55.000 0.00 0.00 36.54 4.92
3175 3252 7.608153 TGCATTGAATGATCATCTCTTTGTTT 58.392 30.769 9.06 0.00 34.96 2.83
3183 3260 5.832595 TGATCATCTCTTTGTTTTTGGTGGA 59.167 36.000 0.00 0.00 0.00 4.02
3260 3337 9.883142 AATAAAGATCTCTGTAGAAGTTCAAGG 57.117 33.333 5.50 0.00 34.73 3.61
3369 3446 0.037447 AAGGAAGTCTTGCTGGAGCC 59.963 55.000 7.45 0.00 41.18 4.70
3409 3486 1.057275 TGCTATTGGTGGGGGCGATA 61.057 55.000 0.00 0.00 0.00 2.92
3483 3560 3.429547 GGATATACAGCCCGTCTATGCAG 60.430 52.174 0.00 0.00 28.96 4.41
3514 3591 2.111384 GGTCTCATGCTCCCTCTAACA 58.889 52.381 0.00 0.00 0.00 2.41
3529 3606 6.326583 TCCCTCTAACACTTATATTCAGTGGG 59.673 42.308 15.62 8.54 45.20 4.61
3588 3665 7.282901 TGGTGTATTCTCATTTGTGATATGTGG 59.717 37.037 0.00 0.00 0.00 4.17
3781 3864 7.444629 TGCATATGATCAATAGGAAAGAAGC 57.555 36.000 6.97 0.00 0.00 3.86
3782 3865 6.432162 TGCATATGATCAATAGGAAAGAAGCC 59.568 38.462 6.97 0.00 0.00 4.35
3857 3940 9.040259 TCCTTTTAGCACTAGCATAGATCATAT 57.960 33.333 0.00 0.00 42.77 1.78
3909 3993 7.772332 CCAACATATGGTCTGTAGAAGTAAC 57.228 40.000 7.80 0.00 44.85 2.50
4143 4228 5.883685 TGATTCCTCAGCATTCTCTACAT 57.116 39.130 0.00 0.00 0.00 2.29
4300 4386 1.279271 CTGTTACTGTCCTGGGGGAAG 59.721 57.143 0.00 0.00 44.15 3.46
4302 4388 0.474854 TTACTGTCCTGGGGGAAGCA 60.475 55.000 0.00 0.00 44.15 3.91
4329 4415 3.039526 CCCCCTCTCCCTCCCTCT 61.040 72.222 0.00 0.00 0.00 3.69
4330 4416 2.612251 CCCCTCTCCCTCCCTCTC 59.388 72.222 0.00 0.00 0.00 3.20
4331 4417 2.018086 CCCCTCTCCCTCCCTCTCT 61.018 68.421 0.00 0.00 0.00 3.10
4332 4418 1.541672 CCCTCTCCCTCCCTCTCTC 59.458 68.421 0.00 0.00 0.00 3.20
4333 4419 0.998945 CCCTCTCCCTCCCTCTCTCT 60.999 65.000 0.00 0.00 0.00 3.10
4334 4420 0.478507 CCTCTCCCTCCCTCTCTCTC 59.521 65.000 0.00 0.00 0.00 3.20
4342 4428 2.370189 CCTCCCTCTCTCTCTCTCTCTC 59.630 59.091 0.00 0.00 0.00 3.20
4378 4464 4.866486 GTGATCATCAAGTTCCCAAAATGC 59.134 41.667 0.00 0.00 0.00 3.56
4393 4479 6.043243 TCCCAAAATGCCAACAAATTACCTTA 59.957 34.615 0.00 0.00 0.00 2.69
4394 4480 6.371271 CCCAAAATGCCAACAAATTACCTTAG 59.629 38.462 0.00 0.00 0.00 2.18
4573 4831 2.169769 GGGTACGATGGAGACCAAATGA 59.830 50.000 0.00 0.00 36.95 2.57
4575 4833 3.809832 GGTACGATGGAGACCAAATGATG 59.190 47.826 0.00 0.00 36.95 3.07
4730 4988 8.783093 CAATGGAGAAACTGTTGAAACTGTATA 58.217 33.333 6.20 0.00 39.69 1.47
5030 5288 5.069251 CCGATCACAGTATAACCCTCTTCTT 59.931 44.000 0.00 0.00 0.00 2.52
5139 5400 5.901853 TCTCAGACACCATAGGATTGATCTT 59.098 40.000 0.00 0.00 0.00 2.40
5170 5431 3.181469 ACAAGGTCTTGACGCTAACAGAA 60.181 43.478 16.55 0.00 42.93 3.02
5174 5435 3.120792 GTCTTGACGCTAACAGAACACA 58.879 45.455 0.00 0.00 0.00 3.72
5193 5454 4.393693 GCAGCATATCCTCCTGCC 57.606 61.111 0.62 0.00 44.60 4.85
5262 5523 2.799126 TTTGGGCGATACTTGATGGT 57.201 45.000 0.00 0.00 0.00 3.55
5288 5549 3.496507 TGAACAAATTGAACTGATCGCGA 59.503 39.130 13.09 13.09 0.00 5.87
5357 5619 6.166279 TGTTTTTGCAATGTGTGACCTTTTA 58.834 32.000 0.00 0.00 0.00 1.52
5392 5654 1.343681 ACCCGGGGATTCTTAGTGCTA 60.344 52.381 27.92 0.00 0.00 3.49
5461 5723 3.752339 CCTTTTCTGGCAGCCGGC 61.752 66.667 21.89 21.89 43.74 6.13
5497 5759 3.295273 AGCGTCTGTGGCTGTCGA 61.295 61.111 0.00 0.00 39.77 4.20
5498 5760 2.355837 GCGTCTGTGGCTGTCGAA 60.356 61.111 0.00 0.00 0.00 3.71
5499 5761 1.954146 GCGTCTGTGGCTGTCGAAA 60.954 57.895 0.00 0.00 0.00 3.46
5500 5762 1.495584 GCGTCTGTGGCTGTCGAAAA 61.496 55.000 0.00 0.00 0.00 2.29
5501 5763 0.508641 CGTCTGTGGCTGTCGAAAAG 59.491 55.000 0.00 0.00 0.00 2.27
5502 5764 1.583054 GTCTGTGGCTGTCGAAAAGT 58.417 50.000 0.00 0.00 0.00 2.66
5503 5765 1.261619 GTCTGTGGCTGTCGAAAAGTG 59.738 52.381 0.00 0.00 0.00 3.16
5504 5766 0.588252 CTGTGGCTGTCGAAAAGTGG 59.412 55.000 0.00 0.00 0.00 4.00
5505 5767 1.282875 GTGGCTGTCGAAAAGTGGC 59.717 57.895 0.00 0.00 0.00 5.01
5506 5768 1.148273 TGGCTGTCGAAAAGTGGCT 59.852 52.632 0.00 0.00 0.00 4.75
5507 5769 1.165907 TGGCTGTCGAAAAGTGGCTG 61.166 55.000 0.00 0.00 0.00 4.85
5508 5770 1.081840 GCTGTCGAAAAGTGGCTGC 60.082 57.895 0.00 0.00 0.00 5.25
5509 5771 1.785041 GCTGTCGAAAAGTGGCTGCA 61.785 55.000 0.50 0.00 0.00 4.41
5510 5772 0.236711 CTGTCGAAAAGTGGCTGCAG 59.763 55.000 10.11 10.11 0.00 4.41
5511 5773 1.081840 GTCGAAAAGTGGCTGCAGC 60.082 57.895 30.88 30.88 41.14 5.25
5512 5774 1.227943 TCGAAAAGTGGCTGCAGCT 60.228 52.632 35.82 17.27 41.70 4.24
5513 5775 1.208614 CGAAAAGTGGCTGCAGCTC 59.791 57.895 35.82 27.33 41.70 4.09
5514 5776 1.583477 GAAAAGTGGCTGCAGCTCC 59.417 57.895 35.82 25.66 41.70 4.70
5515 5777 1.871126 GAAAAGTGGCTGCAGCTCCC 61.871 60.000 35.82 23.28 41.70 4.30
5516 5778 4.711949 AAGTGGCTGCAGCTCCCG 62.712 66.667 35.82 0.55 41.70 5.14
5521 5783 4.828925 GCTGCAGCTCCCGGTCTC 62.829 72.222 31.33 0.00 38.21 3.36
5522 5784 4.154347 CTGCAGCTCCCGGTCTCC 62.154 72.222 0.00 0.00 0.00 3.71
5524 5786 3.474570 GCAGCTCCCGGTCTCCAT 61.475 66.667 0.00 0.00 0.00 3.41
5525 5787 3.036429 GCAGCTCCCGGTCTCCATT 62.036 63.158 0.00 0.00 0.00 3.16
5526 5788 1.153289 CAGCTCCCGGTCTCCATTG 60.153 63.158 0.00 0.00 0.00 2.82
5527 5789 2.514824 GCTCCCGGTCTCCATTGC 60.515 66.667 0.00 0.00 0.00 3.56
5528 5790 3.036429 GCTCCCGGTCTCCATTGCT 62.036 63.158 0.00 0.00 0.00 3.91
5529 5791 1.144936 CTCCCGGTCTCCATTGCTC 59.855 63.158 0.00 0.00 0.00 4.26
5530 5792 1.306141 TCCCGGTCTCCATTGCTCT 60.306 57.895 0.00 0.00 0.00 4.09
5531 5793 0.909610 TCCCGGTCTCCATTGCTCTT 60.910 55.000 0.00 0.00 0.00 2.85
5532 5794 0.745845 CCCGGTCTCCATTGCTCTTG 60.746 60.000 0.00 0.00 0.00 3.02
5533 5795 0.745845 CCGGTCTCCATTGCTCTTGG 60.746 60.000 0.00 0.00 35.45 3.61
5534 5796 0.036010 CGGTCTCCATTGCTCTTGGT 60.036 55.000 1.04 0.00 35.64 3.67
5535 5797 1.207089 CGGTCTCCATTGCTCTTGGTA 59.793 52.381 1.04 0.00 35.64 3.25
5536 5798 2.158900 CGGTCTCCATTGCTCTTGGTAT 60.159 50.000 1.04 0.00 35.64 2.73
5537 5799 3.682718 CGGTCTCCATTGCTCTTGGTATT 60.683 47.826 1.04 0.00 35.64 1.89
5538 5800 4.273318 GGTCTCCATTGCTCTTGGTATTT 58.727 43.478 1.04 0.00 35.64 1.40
5539 5801 4.096984 GGTCTCCATTGCTCTTGGTATTTG 59.903 45.833 1.04 0.00 35.64 2.32
5540 5802 4.943705 GTCTCCATTGCTCTTGGTATTTGA 59.056 41.667 1.04 0.00 35.64 2.69
5541 5803 5.415701 GTCTCCATTGCTCTTGGTATTTGAA 59.584 40.000 1.04 0.00 35.64 2.69
5542 5804 6.009589 TCTCCATTGCTCTTGGTATTTGAAA 58.990 36.000 1.04 0.00 35.64 2.69
5543 5805 6.664816 TCTCCATTGCTCTTGGTATTTGAAAT 59.335 34.615 0.00 0.00 35.64 2.17
5544 5806 7.178983 TCTCCATTGCTCTTGGTATTTGAAATT 59.821 33.333 0.00 0.00 35.64 1.82
5545 5807 7.678837 TCCATTGCTCTTGGTATTTGAAATTT 58.321 30.769 0.00 0.00 35.64 1.82
5546 5808 8.156165 TCCATTGCTCTTGGTATTTGAAATTTT 58.844 29.630 0.00 0.00 35.64 1.82
5547 5809 8.785946 CCATTGCTCTTGGTATTTGAAATTTTT 58.214 29.630 0.00 0.00 0.00 1.94
5616 5878 6.826668 TGGATACATACACACATTCCTAAGG 58.173 40.000 0.00 0.00 46.17 2.69
5617 5879 5.701290 GGATACATACACACATTCCTAAGGC 59.299 44.000 0.00 0.00 0.00 4.35
5618 5880 3.886123 ACATACACACATTCCTAAGGCC 58.114 45.455 0.00 0.00 0.00 5.19
5619 5881 3.523564 ACATACACACATTCCTAAGGCCT 59.476 43.478 0.00 0.00 0.00 5.19
5620 5882 2.496899 ACACACATTCCTAAGGCCTG 57.503 50.000 5.69 0.00 0.00 4.85
5621 5883 1.004745 ACACACATTCCTAAGGCCTGG 59.995 52.381 5.69 3.80 0.00 4.45
5622 5884 1.004745 CACACATTCCTAAGGCCTGGT 59.995 52.381 5.69 0.00 0.00 4.00
5623 5885 2.238646 CACACATTCCTAAGGCCTGGTA 59.761 50.000 5.69 0.00 0.00 3.25
5624 5886 2.916934 ACACATTCCTAAGGCCTGGTAA 59.083 45.455 5.69 0.00 0.00 2.85
5625 5887 3.332485 ACACATTCCTAAGGCCTGGTAAA 59.668 43.478 5.69 0.00 0.00 2.01
5626 5888 4.202631 ACACATTCCTAAGGCCTGGTAAAA 60.203 41.667 5.69 0.00 0.00 1.52
5627 5889 4.770010 CACATTCCTAAGGCCTGGTAAAAA 59.230 41.667 5.69 0.00 0.00 1.94
5628 5890 5.016831 ACATTCCTAAGGCCTGGTAAAAAG 58.983 41.667 5.69 0.00 0.00 2.27
5629 5891 3.081710 TCCTAAGGCCTGGTAAAAAGC 57.918 47.619 5.69 0.00 0.00 3.51
5630 5892 2.647802 TCCTAAGGCCTGGTAAAAAGCT 59.352 45.455 5.69 0.00 0.00 3.74
5631 5893 2.755103 CCTAAGGCCTGGTAAAAAGCTG 59.245 50.000 5.69 0.00 0.00 4.24
5632 5894 2.675658 AAGGCCTGGTAAAAAGCTGA 57.324 45.000 5.69 0.00 0.00 4.26
5633 5895 2.675658 AGGCCTGGTAAAAAGCTGAA 57.324 45.000 3.11 0.00 0.00 3.02
5634 5896 2.957474 AGGCCTGGTAAAAAGCTGAAA 58.043 42.857 3.11 0.00 0.00 2.69
5635 5897 3.304829 AGGCCTGGTAAAAAGCTGAAAA 58.695 40.909 3.11 0.00 0.00 2.29
5636 5898 3.709141 AGGCCTGGTAAAAAGCTGAAAAA 59.291 39.130 3.11 0.00 0.00 1.94
5637 5899 4.058124 GGCCTGGTAAAAAGCTGAAAAAG 58.942 43.478 0.00 0.00 0.00 2.27
5638 5900 4.202212 GGCCTGGTAAAAAGCTGAAAAAGA 60.202 41.667 0.00 0.00 0.00 2.52
5639 5901 5.356426 GCCTGGTAAAAAGCTGAAAAAGAA 58.644 37.500 0.00 0.00 0.00 2.52
5640 5902 5.815222 GCCTGGTAAAAAGCTGAAAAAGAAA 59.185 36.000 0.00 0.00 0.00 2.52
5641 5903 6.483307 GCCTGGTAAAAAGCTGAAAAAGAAAT 59.517 34.615 0.00 0.00 0.00 2.17
5642 5904 7.655732 GCCTGGTAAAAAGCTGAAAAAGAAATA 59.344 33.333 0.00 0.00 0.00 1.40
5643 5905 8.978539 CCTGGTAAAAAGCTGAAAAAGAAATAC 58.021 33.333 0.00 0.00 0.00 1.89
5644 5906 9.750125 CTGGTAAAAAGCTGAAAAAGAAATACT 57.250 29.630 0.00 0.00 0.00 2.12
5691 5953 8.884124 AAGAGAAATTTCTGACATAAATGGGA 57.116 30.769 25.12 0.00 37.73 4.37
5692 5954 9.484806 AAGAGAAATTTCTGACATAAATGGGAT 57.515 29.630 25.12 0.00 37.73 3.85
5693 5955 9.129532 AGAGAAATTTCTGACATAAATGGGATC 57.870 33.333 25.12 5.28 37.73 3.36
5694 5956 8.242729 AGAAATTTCTGACATAAATGGGATCC 57.757 34.615 19.86 1.92 35.89 3.36
5695 5957 7.840716 AGAAATTTCTGACATAAATGGGATCCA 59.159 33.333 19.86 0.00 35.89 3.41
5711 5973 8.940012 ATGGGATCCATTTTCTCCTATATACT 57.060 34.615 15.23 0.00 42.23 2.12
5712 5974 8.150827 TGGGATCCATTTTCTCCTATATACTG 57.849 38.462 15.23 0.00 0.00 2.74
5713 5975 7.739444 TGGGATCCATTTTCTCCTATATACTGT 59.261 37.037 15.23 0.00 0.00 3.55
5714 5976 8.261522 GGGATCCATTTTCTCCTATATACTGTC 58.738 40.741 15.23 0.00 0.00 3.51
5715 5977 8.816894 GGATCCATTTTCTCCTATATACTGTCA 58.183 37.037 6.95 0.00 0.00 3.58
5716 5978 9.868277 GATCCATTTTCTCCTATATACTGTCAG 57.132 37.037 0.00 0.00 0.00 3.51
5717 5979 9.607333 ATCCATTTTCTCCTATATACTGTCAGA 57.393 33.333 6.91 0.00 0.00 3.27
5718 5980 9.434275 TCCATTTTCTCCTATATACTGTCAGAA 57.566 33.333 6.91 0.00 0.00 3.02
5751 6013 7.851822 TTTTTCTATAGCTCAAAACAAAGCG 57.148 32.000 0.00 0.00 43.37 4.68
5752 6014 6.795098 TTTCTATAGCTCAAAACAAAGCGA 57.205 33.333 0.00 0.00 43.37 4.93
5753 6015 6.408858 TTCTATAGCTCAAAACAAAGCGAG 57.591 37.500 0.00 0.00 43.37 5.03
5754 6016 5.720202 TCTATAGCTCAAAACAAAGCGAGA 58.280 37.500 0.00 0.00 43.37 4.04
5755 6017 6.341316 TCTATAGCTCAAAACAAAGCGAGAT 58.659 36.000 0.00 0.00 43.37 2.75
5756 6018 5.886960 ATAGCTCAAAACAAAGCGAGATT 57.113 34.783 0.00 0.00 43.37 2.40
5757 6019 4.574599 AGCTCAAAACAAAGCGAGATTT 57.425 36.364 0.00 0.00 43.37 2.17
5758 6020 4.293415 AGCTCAAAACAAAGCGAGATTTG 58.707 39.130 11.65 11.65 43.37 2.32
5767 6029 5.806089 CAAAGCGAGATTTGTACCAAAAC 57.194 39.130 5.74 0.00 35.80 2.43
5768 6030 5.519722 CAAAGCGAGATTTGTACCAAAACT 58.480 37.500 5.74 0.00 35.80 2.66
5769 6031 5.767816 AAGCGAGATTTGTACCAAAACTT 57.232 34.783 1.78 0.00 0.00 2.66
5770 6032 5.108385 AGCGAGATTTGTACCAAAACTTG 57.892 39.130 8.90 8.90 0.00 3.16
5771 6033 3.668656 GCGAGATTTGTACCAAAACTTGC 59.331 43.478 17.75 17.75 0.00 4.01
5772 6034 4.226761 CGAGATTTGTACCAAAACTTGCC 58.773 43.478 1.78 0.00 0.00 4.52
5773 6035 4.261405 CGAGATTTGTACCAAAACTTGCCA 60.261 41.667 1.78 0.00 0.00 4.92
5774 6036 4.944048 AGATTTGTACCAAAACTTGCCAC 58.056 39.130 0.00 0.00 0.00 5.01
5775 6037 4.404073 AGATTTGTACCAAAACTTGCCACA 59.596 37.500 0.00 0.00 0.00 4.17
5776 6038 3.791973 TTGTACCAAAACTTGCCACAG 57.208 42.857 0.00 0.00 0.00 3.66
5777 6039 2.028130 TGTACCAAAACTTGCCACAGG 58.972 47.619 0.00 0.00 0.00 4.00
5778 6040 2.028876 GTACCAAAACTTGCCACAGGT 58.971 47.619 0.00 0.00 0.00 4.00
5779 6041 2.445682 ACCAAAACTTGCCACAGGTA 57.554 45.000 0.00 0.00 0.00 3.08
5780 6042 2.957474 ACCAAAACTTGCCACAGGTAT 58.043 42.857 0.00 0.00 0.00 2.73
5781 6043 3.304829 ACCAAAACTTGCCACAGGTATT 58.695 40.909 0.00 0.00 0.00 1.89
5782 6044 3.709141 ACCAAAACTTGCCACAGGTATTT 59.291 39.130 0.00 0.00 0.00 1.40
5783 6045 4.057432 CCAAAACTTGCCACAGGTATTTG 58.943 43.478 0.00 0.00 30.26 2.32
5784 6046 4.057432 CAAAACTTGCCACAGGTATTTGG 58.943 43.478 0.00 0.00 35.81 3.28
5785 6047 2.969821 ACTTGCCACAGGTATTTGGA 57.030 45.000 0.00 0.00 34.46 3.53
5786 6048 3.237268 ACTTGCCACAGGTATTTGGAA 57.763 42.857 0.00 0.00 34.46 3.53
5787 6049 3.778265 ACTTGCCACAGGTATTTGGAAT 58.222 40.909 0.00 0.00 34.46 3.01
5788 6050 3.511146 ACTTGCCACAGGTATTTGGAATG 59.489 43.478 0.00 0.00 34.46 2.67
5789 6051 3.168035 TGCCACAGGTATTTGGAATGT 57.832 42.857 0.00 0.00 34.46 2.71
5790 6052 2.824936 TGCCACAGGTATTTGGAATGTG 59.175 45.455 0.00 0.00 40.68 3.21
5791 6053 2.825532 GCCACAGGTATTTGGAATGTGT 59.174 45.455 0.00 0.00 39.64 3.72
5792 6054 4.013728 GCCACAGGTATTTGGAATGTGTA 58.986 43.478 0.00 0.00 39.64 2.90
5793 6055 4.644685 GCCACAGGTATTTGGAATGTGTAT 59.355 41.667 0.00 0.00 39.64 2.29
5794 6056 5.825679 GCCACAGGTATTTGGAATGTGTATA 59.174 40.000 0.00 0.00 39.64 1.47
5795 6057 6.490040 GCCACAGGTATTTGGAATGTGTATAT 59.510 38.462 0.00 0.00 39.64 0.86
5796 6058 7.522073 GCCACAGGTATTTGGAATGTGTATATG 60.522 40.741 0.00 0.00 39.64 1.78
5797 6059 7.502226 CCACAGGTATTTGGAATGTGTATATGT 59.498 37.037 0.00 0.00 39.64 2.29
5798 6060 9.554395 CACAGGTATTTGGAATGTGTATATGTA 57.446 33.333 0.00 0.00 37.17 2.29
5801 6063 9.959721 AGGTATTTGGAATGTGTATATGTATCC 57.040 33.333 0.00 0.00 0.00 2.59
5802 6064 9.174166 GGTATTTGGAATGTGTATATGTATCCC 57.826 37.037 0.00 0.00 0.00 3.85
5803 6065 9.174166 GTATTTGGAATGTGTATATGTATCCCC 57.826 37.037 0.00 0.00 0.00 4.81
5804 6066 5.414789 TGGAATGTGTATATGTATCCCCG 57.585 43.478 0.00 0.00 0.00 5.73
5805 6067 4.224147 TGGAATGTGTATATGTATCCCCGG 59.776 45.833 0.00 0.00 0.00 5.73
5806 6068 4.383770 GGAATGTGTATATGTATCCCCGGG 60.384 50.000 15.80 15.80 0.00 5.73
5807 6069 2.542550 TGTGTATATGTATCCCCGGGG 58.457 52.381 35.80 35.80 0.00 5.73
5874 6136 9.941664 CAAAATGTTAAATATAGAGAGCAGTGG 57.058 33.333 0.00 0.00 0.00 4.00
5875 6137 9.905713 AAAATGTTAAATATAGAGAGCAGTGGA 57.094 29.630 0.00 0.00 0.00 4.02
5876 6138 9.553064 AAATGTTAAATATAGAGAGCAGTGGAG 57.447 33.333 0.00 0.00 0.00 3.86
5877 6139 6.516718 TGTTAAATATAGAGAGCAGTGGAGC 58.483 40.000 0.00 0.00 0.00 4.70
5884 6146 3.699894 AGCAGTGGAGCTCGGGTG 61.700 66.667 7.83 5.57 42.18 4.61
5887 6149 3.699894 AGTGGAGCTCGGGTGCTG 61.700 66.667 7.83 0.00 44.17 4.41
5891 6153 2.437359 GAGCTCGGGTGCTGCAAT 60.437 61.111 2.77 0.00 44.17 3.56
5892 6154 2.437359 AGCTCGGGTGCTGCAATC 60.437 61.111 2.77 0.00 42.33 2.67
5893 6155 3.512516 GCTCGGGTGCTGCAATCC 61.513 66.667 2.77 8.58 0.00 3.01
5894 6156 2.825836 CTCGGGTGCTGCAATCCC 60.826 66.667 16.31 16.31 37.98 3.85
5895 6157 3.329889 TCGGGTGCTGCAATCCCT 61.330 61.111 21.79 0.00 39.10 4.20
5896 6158 2.825836 CGGGTGCTGCAATCCCTC 60.826 66.667 21.79 2.61 39.10 4.30
5897 6159 2.679716 GGGTGCTGCAATCCCTCT 59.320 61.111 18.40 0.00 38.29 3.69
5898 6160 1.452833 GGGTGCTGCAATCCCTCTC 60.453 63.158 18.40 0.00 38.29 3.20
5899 6161 1.606531 GGTGCTGCAATCCCTCTCT 59.393 57.895 2.77 0.00 0.00 3.10
5900 6162 0.463474 GGTGCTGCAATCCCTCTCTC 60.463 60.000 2.77 0.00 0.00 3.20
5901 6163 0.463474 GTGCTGCAATCCCTCTCTCC 60.463 60.000 2.77 0.00 0.00 3.71
5902 6164 0.619832 TGCTGCAATCCCTCTCTCCT 60.620 55.000 0.00 0.00 0.00 3.69
5903 6165 0.179051 GCTGCAATCCCTCTCTCCTG 60.179 60.000 0.00 0.00 0.00 3.86
5904 6166 1.202330 CTGCAATCCCTCTCTCCTGT 58.798 55.000 0.00 0.00 0.00 4.00
5905 6167 0.907486 TGCAATCCCTCTCTCCTGTG 59.093 55.000 0.00 0.00 0.00 3.66
5906 6168 0.179936 GCAATCCCTCTCTCCTGTGG 59.820 60.000 0.00 0.00 0.00 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 1.141019 GAACCATCGAGCACGCCTA 59.859 57.895 0.00 0.00 39.58 3.93
14 15 1.079819 ACCTGAACCATCGAGCACG 60.080 57.895 0.00 0.00 41.26 5.34
16 17 1.375908 GCACCTGAACCATCGAGCA 60.376 57.895 0.00 0.00 0.00 4.26
17 18 2.456119 CGCACCTGAACCATCGAGC 61.456 63.158 0.00 0.00 0.00 5.03
20 21 3.853330 CGCGCACCTGAACCATCG 61.853 66.667 8.75 0.00 0.00 3.84
134 135 5.743117 TGGAATGCCAAAAATATCCAAAGG 58.257 37.500 0.00 0.00 42.49 3.11
204 205 1.079612 ACGGTTACTAGGCGCCAAC 60.080 57.895 31.54 23.15 0.00 3.77
216 217 1.216977 CGCAGATCCCACACGGTTA 59.783 57.895 0.00 0.00 0.00 2.85
232 233 1.379527 CCCATAAACCCTGACTTCGC 58.620 55.000 0.00 0.00 0.00 4.70
335 337 1.272212 AGCAACAAAATAGCAACCCCG 59.728 47.619 0.00 0.00 0.00 5.73
555 565 1.525077 ACGAGCTCCACGGCAAAAA 60.525 52.632 8.47 0.00 34.93 1.94
556 566 2.110213 ACGAGCTCCACGGCAAAA 59.890 55.556 8.47 0.00 34.93 2.44
557 567 2.664851 CACGAGCTCCACGGCAAA 60.665 61.111 8.47 0.00 34.93 3.68
627 637 2.224018 GCAGCAACCAAGAAATTCCACA 60.224 45.455 0.00 0.00 0.00 4.17
665 694 6.705825 ACTGTTTGATAAAATTTCAAGGGCAC 59.294 34.615 0.00 0.00 34.76 5.01
666 695 6.705381 CACTGTTTGATAAAATTTCAAGGGCA 59.295 34.615 0.00 0.00 34.76 5.36
667 696 6.147656 CCACTGTTTGATAAAATTTCAAGGGC 59.852 38.462 0.00 0.00 34.76 5.19
668 697 6.650390 CCCACTGTTTGATAAAATTTCAAGGG 59.350 38.462 0.00 0.00 34.76 3.95
669 698 7.171337 CACCCACTGTTTGATAAAATTTCAAGG 59.829 37.037 0.00 0.00 34.76 3.61
670 699 7.710475 ACACCCACTGTTTGATAAAATTTCAAG 59.290 33.333 0.00 0.00 34.76 3.02
671 700 7.560368 ACACCCACTGTTTGATAAAATTTCAA 58.440 30.769 0.00 0.00 0.00 2.69
672 701 7.118496 ACACCCACTGTTTGATAAAATTTCA 57.882 32.000 0.00 0.00 0.00 2.69
731 760 7.108841 TGTAGAAGACTGTAGTTGTGTTTCT 57.891 36.000 0.00 0.00 0.00 2.52
765 794 3.576982 TGTCAAGTACCTCGAAACCAGAT 59.423 43.478 0.00 0.00 0.00 2.90
774 827 1.618861 CGAGCTTGTCAAGTACCTCG 58.381 55.000 19.74 19.74 34.20 4.63
785 838 0.320160 GTCCGTAAACCCGAGCTTGT 60.320 55.000 0.00 0.00 0.00 3.16
875 929 8.758829 AGAGTACTGACATAACCAACATCATAA 58.241 33.333 0.00 0.00 0.00 1.90
889 943 8.128322 ACTAGTGATCAAAAGAGTACTGACAT 57.872 34.615 0.00 0.00 0.00 3.06
927 981 8.916654 CCGATCAGCACAAATTACTATAGTAAG 58.083 37.037 25.33 16.58 42.94 2.34
972 1026 6.349777 GGGTGTACTGCAGCAACAAAATTATA 60.350 38.462 20.55 0.00 46.68 0.98
975 1029 3.492482 GGGTGTACTGCAGCAACAAAATT 60.492 43.478 20.55 0.00 46.68 1.82
986 1040 5.492855 AGTAAACATAAGGGTGTACTGCA 57.507 39.130 0.00 0.00 39.71 4.41
1001 1055 8.524487 ACAGAAAACAACAACCATTAGTAAACA 58.476 29.630 0.00 0.00 0.00 2.83
1016 1070 7.589221 TCAAAAATGCACAAAACAGAAAACAAC 59.411 29.630 0.00 0.00 0.00 3.32
1017 1071 7.642669 TCAAAAATGCACAAAACAGAAAACAA 58.357 26.923 0.00 0.00 0.00 2.83
1018 1072 7.194607 TCAAAAATGCACAAAACAGAAAACA 57.805 28.000 0.00 0.00 0.00 2.83
1019 1073 9.766277 TTATCAAAAATGCACAAAACAGAAAAC 57.234 25.926 0.00 0.00 0.00 2.43
1093 1147 1.266718 TCGATCTTGTTTTGGTGCTGC 59.733 47.619 0.00 0.00 0.00 5.25
1258 1312 5.465935 ACGAAATTGCAAATGGTACGAATT 58.534 33.333 1.71 0.00 0.00 2.17
1266 1320 5.218885 TCACTGTAACGAAATTGCAAATGG 58.781 37.500 1.71 0.00 31.94 3.16
1296 1350 5.824904 AACCAAGATATGATGTCAGCAAC 57.175 39.130 0.00 0.00 0.00 4.17
1319 1373 5.722021 AACAGGCTAATGTTCCGAAAATT 57.278 34.783 2.10 2.10 39.13 1.82
1342 1396 5.050363 GCAGTTCAACAAAGTAATGACGAGA 60.050 40.000 0.00 0.00 0.00 4.04
1346 1400 5.140177 CGAGCAGTTCAACAAAGTAATGAC 58.860 41.667 0.00 0.00 0.00 3.06
1350 1404 6.314400 AGTTAACGAGCAGTTCAACAAAGTAA 59.686 34.615 0.00 0.00 43.06 2.24
1378 1432 7.284074 TCAAACACAAGGTAGAAAGACCATTA 58.716 34.615 0.00 0.00 42.47 1.90
1582 1640 5.551305 TGTTATATGCTGATACCTGTGCT 57.449 39.130 0.00 0.00 0.00 4.40
1625 1683 9.672086 TTACAAAATACATACAAACTGAAGTGC 57.328 29.630 0.00 0.00 0.00 4.40
1759 1835 3.505680 TGGCGAAACTTGTGATAATTGCT 59.494 39.130 0.00 0.00 0.00 3.91
1873 1949 2.159310 CGAGAGCAGGAGGTACAGAAAG 60.159 54.545 0.00 0.00 0.00 2.62
1878 1954 0.888619 CAACGAGAGCAGGAGGTACA 59.111 55.000 0.00 0.00 0.00 2.90
1892 1968 1.227409 TTTGGAGCAGCGTCAACGA 60.227 52.632 6.75 0.00 43.02 3.85
1893 1969 1.082756 GTTTGGAGCAGCGTCAACG 60.083 57.895 0.00 0.00 43.27 4.10
1970 2046 1.210413 CCAGACTCGGTCGACACTG 59.790 63.158 18.91 15.99 37.67 3.66
2013 2089 6.888105 TCTATCAAGTGAATATGCTGAACCA 58.112 36.000 0.00 0.00 0.00 3.67
2055 2131 3.433274 TGCTCTTTGATGTTCTACTTGCG 59.567 43.478 0.00 0.00 0.00 4.85
2114 2190 3.070018 CCTTTCTCAGTCACACCATCAC 58.930 50.000 0.00 0.00 0.00 3.06
2257 2333 1.423584 TCAACAGCAACCTCTGAGGA 58.576 50.000 29.71 1.03 37.67 3.71
2262 2338 4.899352 AGTAGAATCAACAGCAACCTCT 57.101 40.909 0.00 0.00 0.00 3.69
2290 2366 3.753797 GGTGATTCTTGAAGTCTGGTTCC 59.246 47.826 0.00 0.00 0.00 3.62
2294 2370 4.013267 AGTGGTGATTCTTGAAGTCTGG 57.987 45.455 0.00 0.00 0.00 3.86
2316 2392 2.944129 TCTTTGGCAAAAGTAGCACCT 58.056 42.857 14.43 0.00 42.91 4.00
2323 2399 5.299949 GTTTGATGGATCTTTGGCAAAAGT 58.700 37.500 14.43 5.31 42.91 2.66
2366 2442 4.910304 AGGATGTGCTATCCTTCATAGGTT 59.090 41.667 14.88 0.00 45.78 3.50
2376 2452 2.923121 TGCTCAAAGGATGTGCTATCC 58.077 47.619 11.30 11.30 46.26 2.59
2379 2455 2.076100 CGTTGCTCAAAGGATGTGCTA 58.924 47.619 4.44 0.00 46.26 3.49
2399 2475 2.094545 GGCACCTCATCATTTCCACAAC 60.095 50.000 0.00 0.00 0.00 3.32
2431 2507 4.982295 GGCAACAGGTAATCAAGAAAACAC 59.018 41.667 0.00 0.00 0.00 3.32
2459 2535 9.807649 AAATCTGGAGCATAATGTGAAAATAAC 57.192 29.630 0.00 0.00 0.00 1.89
2527 2603 8.156820 TGCATACAGTACCAGAAATAGCATTAT 58.843 33.333 0.00 0.00 0.00 1.28
2584 2660 5.612725 TTTTCCCAATTGCTTGAGTCTTT 57.387 34.783 0.00 0.00 34.04 2.52
2626 2702 3.971245 TTGCACCCAAAAGTTCAAAGT 57.029 38.095 0.00 0.00 0.00 2.66
2681 2757 1.808945 ACAATGAGGAAAGCAGCTTCG 59.191 47.619 8.48 0.00 0.00 3.79
2683 2759 3.151912 AGACAATGAGGAAAGCAGCTT 57.848 42.857 0.21 0.21 0.00 3.74
2885 2962 6.375455 AGTTGCCCTCAATACAAGTATTTCTG 59.625 38.462 2.82 0.00 33.79 3.02
3051 3128 0.324645 GGGATGGCAACCAGGTGATT 60.325 55.000 16.20 0.00 36.75 2.57
3108 3185 0.252479 CTGAGCTCATTGGCCTCAGT 59.748 55.000 18.63 0.00 35.20 3.41
3175 3252 2.361104 GCCATCGCCTCCACCAAA 60.361 61.111 0.00 0.00 0.00 3.28
3183 3260 1.598962 CCATGAATCGCCATCGCCT 60.599 57.895 0.00 0.00 35.26 5.52
3260 3337 4.691860 AGCAATGCAGATAGTCAAACAC 57.308 40.909 8.35 0.00 0.00 3.32
3409 3486 6.986817 TCAACTTCTGAAAAAGATCTCGACTT 59.013 34.615 0.00 0.00 33.93 3.01
3483 3560 2.947652 AGCATGAGACCATACACATTGC 59.052 45.455 0.00 0.00 0.00 3.56
3514 3591 9.614792 GTTTAGAACATCCCACTGAATATAAGT 57.385 33.333 0.00 0.00 0.00 2.24
3565 3642 8.046107 TGACCACATATCACAAATGAGAATACA 58.954 33.333 0.00 0.00 38.57 2.29
3566 3643 8.437360 TGACCACATATCACAAATGAGAATAC 57.563 34.615 0.00 0.00 38.57 1.89
3588 3665 8.638629 TCTAGCTTATAGAATCTAACCCTGAC 57.361 38.462 0.00 0.00 0.00 3.51
3706 3783 8.122472 GGAACTCCATCCTTTAAAAGATGAAA 57.878 34.615 22.85 12.47 36.50 2.69
3909 3993 7.169140 TGACGTGGAAATATCAAACATCTATCG 59.831 37.037 0.00 0.00 0.00 2.92
4009 4094 4.646945 TGGAACAAACATAGCAGTGGAAAA 59.353 37.500 0.00 0.00 31.92 2.29
4010 4095 4.211125 TGGAACAAACATAGCAGTGGAAA 58.789 39.130 0.00 0.00 31.92 3.13
4015 4100 1.806542 CGCTGGAACAAACATAGCAGT 59.193 47.619 0.00 0.00 38.70 4.40
4072 4157 8.183104 TGAAATCATAACCACCAACAACATAA 57.817 30.769 0.00 0.00 0.00 1.90
4316 4402 1.421646 GAGAGAGAGAGGGAGGGAGAG 59.578 61.905 0.00 0.00 0.00 3.20
4317 4403 1.010793 AGAGAGAGAGAGGGAGGGAGA 59.989 57.143 0.00 0.00 0.00 3.71
4318 4404 1.421646 GAGAGAGAGAGAGGGAGGGAG 59.578 61.905 0.00 0.00 0.00 4.30
4319 4405 1.010793 AGAGAGAGAGAGAGGGAGGGA 59.989 57.143 0.00 0.00 0.00 4.20
4322 4408 3.312890 AGAGAGAGAGAGAGAGAGGGAG 58.687 54.545 0.00 0.00 0.00 4.30
4323 4409 3.051803 AGAGAGAGAGAGAGAGAGAGGGA 60.052 52.174 0.00 0.00 0.00 4.20
4324 4410 3.312890 AGAGAGAGAGAGAGAGAGAGGG 58.687 54.545 0.00 0.00 0.00 4.30
4325 4411 4.222336 AGAGAGAGAGAGAGAGAGAGAGG 58.778 52.174 0.00 0.00 0.00 3.69
4326 4412 5.362143 TCAAGAGAGAGAGAGAGAGAGAGAG 59.638 48.000 0.00 0.00 0.00 3.20
4327 4413 5.127845 GTCAAGAGAGAGAGAGAGAGAGAGA 59.872 48.000 0.00 0.00 0.00 3.10
4328 4414 5.355596 GTCAAGAGAGAGAGAGAGAGAGAG 58.644 50.000 0.00 0.00 0.00 3.20
4329 4415 4.162320 GGTCAAGAGAGAGAGAGAGAGAGA 59.838 50.000 0.00 0.00 0.00 3.10
4330 4416 4.446371 GGTCAAGAGAGAGAGAGAGAGAG 58.554 52.174 0.00 0.00 0.00 3.20
4331 4417 3.199946 GGGTCAAGAGAGAGAGAGAGAGA 59.800 52.174 0.00 0.00 0.00 3.10
4332 4418 3.200825 AGGGTCAAGAGAGAGAGAGAGAG 59.799 52.174 0.00 0.00 0.00 3.20
4333 4419 3.054434 CAGGGTCAAGAGAGAGAGAGAGA 60.054 52.174 0.00 0.00 0.00 3.10
4334 4420 3.282021 CAGGGTCAAGAGAGAGAGAGAG 58.718 54.545 0.00 0.00 0.00 3.20
4342 4428 3.450096 TGATGATCACAGGGTCAAGAGAG 59.550 47.826 0.00 0.00 0.00 3.20
4454 4712 8.971321 TGTATGTTTAAGAGACGTCAAACTTAC 58.029 33.333 27.14 27.14 39.50 2.34
4573 4831 3.584406 TCAAAGATCTCCACAGTGGACAT 59.416 43.478 19.21 14.38 42.67 3.06
4575 4833 3.330267 GTCAAAGATCTCCACAGTGGAC 58.670 50.000 19.21 9.37 42.67 4.02
4730 4988 3.898123 TCCAGAGTAAGCAGTCAGAAACT 59.102 43.478 0.00 0.00 39.44 2.66
4740 4998 4.223700 ACAATCAGTGATCCAGAGTAAGCA 59.776 41.667 5.98 0.00 0.00 3.91
5030 5288 1.858739 AACCCCCAGCGGCTATTTCA 61.859 55.000 0.26 0.00 0.00 2.69
5139 5400 3.202906 GTCAAGACCTTGTGTTGCTGTA 58.797 45.455 9.31 0.00 41.16 2.74
5170 5431 1.773052 AGGAGGATATGCTGCATGTGT 59.227 47.619 24.59 10.66 0.00 3.72
5193 5454 3.777925 CGCCCACTCAAGAACGCG 61.778 66.667 3.53 3.53 0.00 6.01
5262 5523 4.320421 CGATCAGTTCAATTTGTTCAGGCA 60.320 41.667 0.00 0.00 0.00 4.75
5392 5654 3.701040 ACAGAACAAAGACATGGTGCTTT 59.299 39.130 0.00 1.14 34.86 3.51
5404 5666 5.992217 AGCTAGGTACAAGAACAGAACAAAG 59.008 40.000 0.00 0.00 0.00 2.77
5480 5742 2.363711 TTTCGACAGCCACAGACGCT 62.364 55.000 0.00 0.00 36.91 5.07
5495 5757 1.208614 GAGCTGCAGCCACTTTTCG 59.791 57.895 34.39 0.00 43.38 3.46
5496 5758 1.583477 GGAGCTGCAGCCACTTTTC 59.417 57.895 34.39 23.05 43.38 2.29
5497 5759 1.905354 GGGAGCTGCAGCCACTTTT 60.905 57.895 34.39 15.79 43.38 2.27
5498 5760 2.282745 GGGAGCTGCAGCCACTTT 60.283 61.111 34.39 16.62 43.38 2.66
5499 5761 4.711949 CGGGAGCTGCAGCCACTT 62.712 66.667 34.39 17.05 43.38 3.16
5504 5766 4.828925 GAGACCGGGAGCTGCAGC 62.829 72.222 31.53 31.53 42.49 5.25
5505 5767 4.154347 GGAGACCGGGAGCTGCAG 62.154 72.222 10.11 10.11 0.00 4.41
5507 5769 3.036429 AATGGAGACCGGGAGCTGC 62.036 63.158 6.32 6.08 0.00 5.25
5508 5770 1.153289 CAATGGAGACCGGGAGCTG 60.153 63.158 6.32 0.00 0.00 4.24
5509 5771 3.036429 GCAATGGAGACCGGGAGCT 62.036 63.158 6.32 0.00 0.00 4.09
5510 5772 2.514824 GCAATGGAGACCGGGAGC 60.515 66.667 6.32 0.00 0.00 4.70
5511 5773 1.144936 GAGCAATGGAGACCGGGAG 59.855 63.158 6.32 0.00 0.00 4.30
5512 5774 0.909610 AAGAGCAATGGAGACCGGGA 60.910 55.000 6.32 0.00 0.00 5.14
5513 5775 0.745845 CAAGAGCAATGGAGACCGGG 60.746 60.000 6.32 0.00 0.00 5.73
5514 5776 0.745845 CCAAGAGCAATGGAGACCGG 60.746 60.000 0.00 0.00 40.56 5.28
5515 5777 0.036010 ACCAAGAGCAATGGAGACCG 60.036 55.000 9.15 0.00 40.56 4.79
5516 5778 3.567478 ATACCAAGAGCAATGGAGACC 57.433 47.619 9.15 0.00 40.56 3.85
5517 5779 4.943705 TCAAATACCAAGAGCAATGGAGAC 59.056 41.667 9.15 0.00 40.56 3.36
5518 5780 5.178096 TCAAATACCAAGAGCAATGGAGA 57.822 39.130 9.15 0.00 40.56 3.71
5519 5781 5.902613 TTCAAATACCAAGAGCAATGGAG 57.097 39.130 9.15 0.00 40.56 3.86
5520 5782 6.855763 ATTTCAAATACCAAGAGCAATGGA 57.144 33.333 9.15 0.00 40.56 3.41
5521 5783 7.910441 AAATTTCAAATACCAAGAGCAATGG 57.090 32.000 1.32 1.32 43.84 3.16
5573 5835 9.621629 TGTATCCACGTATTTGATTTAGGATTT 57.378 29.630 0.00 0.00 36.20 2.17
5574 5836 9.793259 ATGTATCCACGTATTTGATTTAGGATT 57.207 29.630 0.00 0.00 36.20 3.01
5576 5838 9.701098 GTATGTATCCACGTATTTGATTTAGGA 57.299 33.333 0.00 0.00 0.00 2.94
5577 5839 9.483916 TGTATGTATCCACGTATTTGATTTAGG 57.516 33.333 0.00 0.00 0.00 2.69
5579 5841 9.819267 TGTGTATGTATCCACGTATTTGATTTA 57.181 29.630 0.00 0.00 34.28 1.40
5580 5842 8.609176 GTGTGTATGTATCCACGTATTTGATTT 58.391 33.333 0.00 0.00 34.28 2.17
5581 5843 7.766738 TGTGTGTATGTATCCACGTATTTGATT 59.233 33.333 0.00 0.00 34.28 2.57
5582 5844 7.269316 TGTGTGTATGTATCCACGTATTTGAT 58.731 34.615 0.00 0.00 34.28 2.57
5583 5845 6.631962 TGTGTGTATGTATCCACGTATTTGA 58.368 36.000 0.00 0.00 34.28 2.69
5584 5846 6.895607 TGTGTGTATGTATCCACGTATTTG 57.104 37.500 0.00 0.00 34.28 2.32
5585 5847 7.225931 GGAATGTGTGTATGTATCCACGTATTT 59.774 37.037 0.00 0.00 34.28 1.40
5586 5848 6.704493 GGAATGTGTGTATGTATCCACGTATT 59.296 38.462 0.00 0.00 34.28 1.89
5587 5849 6.041637 AGGAATGTGTGTATGTATCCACGTAT 59.958 38.462 0.00 0.00 34.28 3.06
5588 5850 5.361571 AGGAATGTGTGTATGTATCCACGTA 59.638 40.000 0.00 0.00 34.28 3.57
5589 5851 4.161565 AGGAATGTGTGTATGTATCCACGT 59.838 41.667 0.00 0.00 34.28 4.49
5590 5852 4.693283 AGGAATGTGTGTATGTATCCACG 58.307 43.478 0.00 0.00 34.28 4.94
5591 5853 6.706270 CCTTAGGAATGTGTGTATGTATCCAC 59.294 42.308 0.00 0.00 0.00 4.02
5592 5854 6.687901 GCCTTAGGAATGTGTGTATGTATCCA 60.688 42.308 0.69 0.00 0.00 3.41
5593 5855 5.701290 GCCTTAGGAATGTGTGTATGTATCC 59.299 44.000 0.69 0.00 0.00 2.59
5594 5856 5.701290 GGCCTTAGGAATGTGTGTATGTATC 59.299 44.000 0.69 0.00 0.00 2.24
5595 5857 5.369699 AGGCCTTAGGAATGTGTGTATGTAT 59.630 40.000 0.00 0.00 0.00 2.29
5596 5858 4.719773 AGGCCTTAGGAATGTGTGTATGTA 59.280 41.667 0.00 0.00 0.00 2.29
5597 5859 3.523564 AGGCCTTAGGAATGTGTGTATGT 59.476 43.478 0.00 0.00 0.00 2.29
5598 5860 3.879295 CAGGCCTTAGGAATGTGTGTATG 59.121 47.826 0.00 0.00 0.00 2.39
5599 5861 3.117888 CCAGGCCTTAGGAATGTGTGTAT 60.118 47.826 0.00 0.00 0.00 2.29
5600 5862 2.238646 CCAGGCCTTAGGAATGTGTGTA 59.761 50.000 0.00 0.00 0.00 2.90
5601 5863 1.004745 CCAGGCCTTAGGAATGTGTGT 59.995 52.381 0.00 0.00 0.00 3.72
5602 5864 1.004745 ACCAGGCCTTAGGAATGTGTG 59.995 52.381 15.94 0.00 0.00 3.82
5603 5865 1.372501 ACCAGGCCTTAGGAATGTGT 58.627 50.000 15.94 0.00 0.00 3.72
5604 5866 3.644966 TTACCAGGCCTTAGGAATGTG 57.355 47.619 15.94 0.00 0.00 3.21
5605 5867 4.668138 TTTTACCAGGCCTTAGGAATGT 57.332 40.909 15.94 1.74 0.00 2.71
5606 5868 4.142160 GCTTTTTACCAGGCCTTAGGAATG 60.142 45.833 15.94 0.00 0.00 2.67
5607 5869 4.023980 GCTTTTTACCAGGCCTTAGGAAT 58.976 43.478 15.94 0.00 0.00 3.01
5608 5870 3.075432 AGCTTTTTACCAGGCCTTAGGAA 59.925 43.478 15.94 4.55 0.00 3.36
5609 5871 2.647802 AGCTTTTTACCAGGCCTTAGGA 59.352 45.455 15.94 0.00 0.00 2.94
5610 5872 2.755103 CAGCTTTTTACCAGGCCTTAGG 59.245 50.000 0.00 4.64 0.00 2.69
5611 5873 3.686016 TCAGCTTTTTACCAGGCCTTAG 58.314 45.455 0.00 0.00 0.00 2.18
5612 5874 3.799432 TCAGCTTTTTACCAGGCCTTA 57.201 42.857 0.00 0.00 0.00 2.69
5613 5875 2.675658 TCAGCTTTTTACCAGGCCTT 57.324 45.000 0.00 0.00 0.00 4.35
5614 5876 2.675658 TTCAGCTTTTTACCAGGCCT 57.324 45.000 0.00 0.00 0.00 5.19
5615 5877 3.744238 TTTTCAGCTTTTTACCAGGCC 57.256 42.857 0.00 0.00 0.00 5.19
5616 5878 4.944048 TCTTTTTCAGCTTTTTACCAGGC 58.056 39.130 0.00 0.00 0.00 4.85
5617 5879 8.978539 GTATTTCTTTTTCAGCTTTTTACCAGG 58.021 33.333 0.00 0.00 0.00 4.45
5618 5880 9.750125 AGTATTTCTTTTTCAGCTTTTTACCAG 57.250 29.630 0.00 0.00 0.00 4.00
5665 5927 9.312904 TCCCATTTATGTCAGAAATTTCTCTTT 57.687 29.630 17.91 6.27 34.74 2.52
5666 5928 8.884124 TCCCATTTATGTCAGAAATTTCTCTT 57.116 30.769 17.91 8.72 34.74 2.85
5667 5929 9.129532 GATCCCATTTATGTCAGAAATTTCTCT 57.870 33.333 17.91 6.11 34.74 3.10
5668 5930 8.355913 GGATCCCATTTATGTCAGAAATTTCTC 58.644 37.037 17.91 8.67 34.74 2.87
5669 5931 7.840716 TGGATCCCATTTATGTCAGAAATTTCT 59.159 33.333 15.11 15.11 38.25 2.52
5670 5932 8.010733 TGGATCCCATTTATGTCAGAAATTTC 57.989 34.615 9.90 10.33 0.00 2.17
5671 5933 7.976414 TGGATCCCATTTATGTCAGAAATTT 57.024 32.000 9.90 0.00 0.00 1.82
5687 5949 7.739444 ACAGTATATAGGAGAAAATGGATCCCA 59.261 37.037 9.90 0.00 38.19 4.37
5688 5950 8.152023 ACAGTATATAGGAGAAAATGGATCCC 57.848 38.462 9.90 0.00 33.30 3.85
5689 5951 8.816894 TGACAGTATATAGGAGAAAATGGATCC 58.183 37.037 4.20 4.20 0.00 3.36
5690 5952 9.868277 CTGACAGTATATAGGAGAAAATGGATC 57.132 37.037 0.00 0.00 0.00 3.36
5691 5953 9.607333 TCTGACAGTATATAGGAGAAAATGGAT 57.393 33.333 1.59 0.00 0.00 3.41
5692 5954 9.434275 TTCTGACAGTATATAGGAGAAAATGGA 57.566 33.333 1.59 0.00 0.00 3.41
5727 5989 7.644490 TCGCTTTGTTTTGAGCTATAGAAAAA 58.356 30.769 3.21 4.36 36.76 1.94
5728 5990 7.172532 TCTCGCTTTGTTTTGAGCTATAGAAAA 59.827 33.333 3.21 0.00 36.76 2.29
5729 5991 6.649141 TCTCGCTTTGTTTTGAGCTATAGAAA 59.351 34.615 3.21 0.00 36.76 2.52
5730 5992 6.163476 TCTCGCTTTGTTTTGAGCTATAGAA 58.837 36.000 3.21 0.00 36.76 2.10
5731 5993 5.720202 TCTCGCTTTGTTTTGAGCTATAGA 58.280 37.500 3.21 0.00 36.76 1.98
5732 5994 6.595772 ATCTCGCTTTGTTTTGAGCTATAG 57.404 37.500 0.00 0.00 36.76 1.31
5733 5995 6.985188 AATCTCGCTTTGTTTTGAGCTATA 57.015 33.333 0.00 0.00 36.76 1.31
5734 5996 5.886960 AATCTCGCTTTGTTTTGAGCTAT 57.113 34.783 0.00 0.00 36.76 2.97
5735 5997 5.008613 ACAAATCTCGCTTTGTTTTGAGCTA 59.991 36.000 0.00 0.00 44.76 3.32
5736 5998 4.202050 ACAAATCTCGCTTTGTTTTGAGCT 60.202 37.500 0.00 0.00 44.76 4.09
5737 5999 4.044426 ACAAATCTCGCTTTGTTTTGAGC 58.956 39.130 0.00 0.00 44.76 4.26
5738 6000 5.625311 GGTACAAATCTCGCTTTGTTTTGAG 59.375 40.000 13.30 0.00 44.76 3.02
5739 6001 5.066634 TGGTACAAATCTCGCTTTGTTTTGA 59.933 36.000 13.30 0.00 44.76 2.69
5740 6002 5.277825 TGGTACAAATCTCGCTTTGTTTTG 58.722 37.500 13.30 5.24 44.76 2.44
5741 6003 5.508200 TGGTACAAATCTCGCTTTGTTTT 57.492 34.783 13.30 0.00 44.76 2.43
5757 6019 2.028130 CCTGTGGCAAGTTTTGGTACA 58.972 47.619 0.00 0.00 0.00 2.90
5758 6020 2.028876 ACCTGTGGCAAGTTTTGGTAC 58.971 47.619 0.00 0.00 0.00 3.34
5759 6021 2.445682 ACCTGTGGCAAGTTTTGGTA 57.554 45.000 0.00 0.00 0.00 3.25
5760 6022 2.445682 TACCTGTGGCAAGTTTTGGT 57.554 45.000 0.00 0.00 0.00 3.67
5761 6023 4.057432 CAAATACCTGTGGCAAGTTTTGG 58.943 43.478 0.00 0.00 0.00 3.28
5762 6024 4.057432 CCAAATACCTGTGGCAAGTTTTG 58.943 43.478 0.00 2.36 0.00 2.44
5763 6025 3.964031 TCCAAATACCTGTGGCAAGTTTT 59.036 39.130 0.00 0.00 34.68 2.43
5764 6026 3.571590 TCCAAATACCTGTGGCAAGTTT 58.428 40.909 0.00 0.00 34.68 2.66
5765 6027 3.237268 TCCAAATACCTGTGGCAAGTT 57.763 42.857 0.00 0.00 34.68 2.66
5766 6028 2.969821 TCCAAATACCTGTGGCAAGT 57.030 45.000 0.00 0.00 34.68 3.16
5767 6029 3.511146 ACATTCCAAATACCTGTGGCAAG 59.489 43.478 0.00 0.00 34.68 4.01
5768 6030 3.257873 CACATTCCAAATACCTGTGGCAA 59.742 43.478 0.00 0.00 34.88 4.52
5769 6031 2.824936 CACATTCCAAATACCTGTGGCA 59.175 45.455 0.00 0.00 34.88 4.92
5770 6032 2.825532 ACACATTCCAAATACCTGTGGC 59.174 45.455 6.02 0.00 41.09 5.01
5771 6033 7.502226 ACATATACACATTCCAAATACCTGTGG 59.498 37.037 6.02 0.00 41.09 4.17
5772 6034 8.450578 ACATATACACATTCCAAATACCTGTG 57.549 34.615 0.00 0.00 42.19 3.66
5775 6037 9.959721 GGATACATATACACATTCCAAATACCT 57.040 33.333 0.00 0.00 0.00 3.08
5776 6038 9.174166 GGGATACATATACACATTCCAAATACC 57.826 37.037 0.00 0.00 39.74 2.73
5777 6039 9.174166 GGGGATACATATACACATTCCAAATAC 57.826 37.037 0.00 0.00 39.74 1.89
5778 6040 8.044309 CGGGGATACATATACACATTCCAAATA 58.956 37.037 0.00 0.00 39.74 1.40
5779 6041 6.884295 CGGGGATACATATACACATTCCAAAT 59.116 38.462 0.00 0.00 39.74 2.32
5780 6042 6.234920 CGGGGATACATATACACATTCCAAA 58.765 40.000 0.00 0.00 39.74 3.28
5781 6043 5.280266 CCGGGGATACATATACACATTCCAA 60.280 44.000 0.00 0.00 39.74 3.53
5782 6044 4.224147 CCGGGGATACATATACACATTCCA 59.776 45.833 0.00 0.00 39.74 3.53
5783 6045 4.383770 CCCGGGGATACATATACACATTCC 60.384 50.000 14.71 0.00 39.74 3.01
5784 6046 4.383770 CCCCGGGGATACATATACACATTC 60.384 50.000 38.41 0.00 37.50 2.67
5785 6047 3.521937 CCCCGGGGATACATATACACATT 59.478 47.826 38.41 0.00 37.50 2.71
5786 6048 3.112263 CCCCGGGGATACATATACACAT 58.888 50.000 38.41 0.00 37.50 3.21
5787 6049 2.112151 TCCCCGGGGATACATATACACA 59.888 50.000 39.67 11.95 39.76 3.72
5788 6050 2.823959 TCCCCGGGGATACATATACAC 58.176 52.381 39.67 0.00 39.76 2.90
5789 6051 3.563861 TTCCCCGGGGATACATATACA 57.436 47.619 42.75 22.15 44.74 2.29
5790 6052 4.914177 TTTTCCCCGGGGATACATATAC 57.086 45.455 42.75 0.00 44.74 1.47
5848 6110 9.941664 CCACTGCTCTCTATATTTAACATTTTG 57.058 33.333 0.00 0.00 0.00 2.44
5849 6111 9.905713 TCCACTGCTCTCTATATTTAACATTTT 57.094 29.630 0.00 0.00 0.00 1.82
5850 6112 9.553064 CTCCACTGCTCTCTATATTTAACATTT 57.447 33.333 0.00 0.00 0.00 2.32
5851 6113 7.659390 GCTCCACTGCTCTCTATATTTAACATT 59.341 37.037 0.00 0.00 0.00 2.71
5852 6114 7.016072 AGCTCCACTGCTCTCTATATTTAACAT 59.984 37.037 0.00 0.00 39.34 2.71
5853 6115 6.325028 AGCTCCACTGCTCTCTATATTTAACA 59.675 38.462 0.00 0.00 39.34 2.41
5854 6116 6.754193 AGCTCCACTGCTCTCTATATTTAAC 58.246 40.000 0.00 0.00 39.34 2.01
5855 6117 6.985653 AGCTCCACTGCTCTCTATATTTAA 57.014 37.500 0.00 0.00 39.34 1.52
5869 6131 3.699894 AGCACCCGAGCTCCACTG 61.700 66.667 8.47 1.41 42.18 3.66
5870 6132 3.699894 CAGCACCCGAGCTCCACT 61.700 66.667 8.47 0.00 44.54 4.00
5873 6135 3.984193 ATTGCAGCACCCGAGCTCC 62.984 63.158 8.47 0.00 44.54 4.70
5874 6136 2.437359 ATTGCAGCACCCGAGCTC 60.437 61.111 2.73 2.73 44.54 4.09
5876 6138 3.512516 GGATTGCAGCACCCGAGC 61.513 66.667 0.00 0.00 0.00 5.03
5877 6139 2.825836 GGGATTGCAGCACCCGAG 60.826 66.667 5.33 0.00 34.03 4.63
5880 6142 1.452833 GAGAGGGATTGCAGCACCC 60.453 63.158 12.47 12.47 43.55 4.61
5881 6143 0.463474 GAGAGAGGGATTGCAGCACC 60.463 60.000 0.00 0.00 0.00 5.01
5882 6144 0.463474 GGAGAGAGGGATTGCAGCAC 60.463 60.000 0.00 0.00 0.00 4.40
5883 6145 0.619832 AGGAGAGAGGGATTGCAGCA 60.620 55.000 0.00 0.00 0.00 4.41
5884 6146 0.179051 CAGGAGAGAGGGATTGCAGC 60.179 60.000 0.00 0.00 0.00 5.25
5885 6147 1.134461 CACAGGAGAGAGGGATTGCAG 60.134 57.143 0.00 0.00 0.00 4.41
5886 6148 0.907486 CACAGGAGAGAGGGATTGCA 59.093 55.000 0.00 0.00 0.00 4.08
5887 6149 0.179936 CCACAGGAGAGAGGGATTGC 59.820 60.000 0.00 0.00 0.00 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.