Multiple sequence alignment - TraesCS3A01G098700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G098700 chr3A 100.000 5742 0 0 1 5742 63576437 63570696 0.000000e+00 10604.0
1 TraesCS3A01G098700 chr3A 94.545 55 3 0 5258 5312 730178957 730179011 1.030000e-12 86.1
2 TraesCS3A01G098700 chr3B 87.957 2815 201 57 4 2731 81172711 81169948 0.000000e+00 3193.0
3 TraesCS3A01G098700 chr3B 94.034 352 21 0 4421 4772 81167573 81167222 8.470000e-148 534.0
4 TraesCS3A01G098700 chr3B 82.420 529 56 21 3246 3757 81169380 81168872 1.480000e-115 427.0
5 TraesCS3A01G098700 chr3B 93.827 243 12 2 4810 5052 81167207 81166968 4.230000e-96 363.0
6 TraesCS3A01G098700 chr3B 85.286 367 25 10 5034 5397 81166949 81166609 9.150000e-93 351.0
7 TraesCS3A01G098700 chr3B 91.558 154 12 1 5243 5396 80545533 80545381 1.620000e-50 211.0
8 TraesCS3A01G098700 chr3B 85.492 193 17 7 3758 3948 81168829 81168646 2.110000e-44 191.0
9 TraesCS3A01G098700 chr3B 87.135 171 16 5 5525 5693 48883958 48883792 7.600000e-44 189.0
10 TraesCS3A01G098700 chr3D 92.210 1656 90 14 3757 5375 50786542 50784889 0.000000e+00 2307.0
11 TraesCS3A01G098700 chr3D 85.781 1716 123 51 4 1646 50790431 50788764 0.000000e+00 1705.0
12 TraesCS3A01G098700 chr3D 85.654 1429 145 39 1701 3109 50788683 50787295 0.000000e+00 1448.0
13 TraesCS3A01G098700 chr3D 84.848 528 51 18 3246 3757 50787098 50786584 6.640000e-139 505.0
14 TraesCS3A01G098700 chr7D 92.453 265 19 1 5439 5703 511190315 511190578 1.510000e-100 377.0
15 TraesCS3A01G098700 chr1A 89.860 286 27 2 5442 5727 54070031 54069748 3.270000e-97 366.0
16 TraesCS3A01G098700 chr4D 91.353 266 22 1 5442 5707 440510045 440510309 4.230000e-96 363.0
17 TraesCS3A01G098700 chr5D 89.855 276 25 2 5437 5710 139429013 139428739 9.150000e-93 351.0
18 TraesCS3A01G098700 chr6A 90.037 271 25 2 5440 5710 308188238 308187970 3.290000e-92 350.0
19 TraesCS3A01G098700 chr7A 89.963 269 27 0 5442 5710 27741514 27741246 1.180000e-91 348.0
20 TraesCS3A01G098700 chr2D 90.262 267 24 2 5441 5707 501303671 501303935 1.180000e-91 348.0
21 TraesCS3A01G098700 chr5A 89.888 267 25 2 5441 5707 35986948 35987212 5.510000e-90 342.0
22 TraesCS3A01G098700 chr2A 89.630 270 25 3 5441 5710 572800180 572799914 1.980000e-89 340.0
23 TraesCS3A01G098700 chr4A 83.333 150 15 6 5258 5397 625375932 625376081 4.670000e-26 130.0
24 TraesCS3A01G098700 chr4A 82.667 150 16 6 5258 5397 625382182 625382331 2.170000e-24 124.0
25 TraesCS3A01G098700 chr7B 100.000 31 0 0 5700 5730 453265391 453265361 2.230000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G098700 chr3A 63570696 63576437 5741 True 10604.000000 10604 100.000000 1 5742 1 chr3A.!!$R1 5741
1 TraesCS3A01G098700 chr3B 81166609 81172711 6102 True 843.166667 3193 88.169333 4 5397 6 chr3B.!!$R3 5393
2 TraesCS3A01G098700 chr3D 50784889 50790431 5542 True 1491.250000 2307 87.123250 4 5375 4 chr3D.!!$R1 5371

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
232 234 0.030235 CTCGTCGGTTATGATCCGCA 59.970 55.0 0.00 0.0 46.49 5.69 F
430 433 0.184451 CCCTGCATATTGCCTGAGGT 59.816 55.0 0.00 0.0 44.23 3.85 F
560 566 0.249405 AAAGTTGCATTGCACGGGTG 60.249 50.0 11.66 0.0 38.71 4.61 F
2460 2615 0.307760 CCAAAACTCGTCAGCCACAC 59.692 55.0 0.00 0.0 0.00 3.82 F
2582 2738 0.033796 AGTGCACCCCATCATGGAAG 60.034 55.0 14.63 0.0 40.96 3.46 F
2954 3117 0.040958 GCTAAATGAATGAGCGGGCG 60.041 55.0 0.00 0.0 0.00 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1895 2044 0.036875 ACTTGTGGGGTTGAGCTAGC 59.963 55.000 6.62 6.62 0.00 3.42 R
2031 2183 0.605860 GCAGCAGCTGATGATAGGGG 60.606 60.000 34.79 7.54 37.91 4.79 R
2478 2633 1.408702 AGCAAACAATGGTGACCACAC 59.591 47.619 6.40 0.00 45.27 3.82 R
3330 3693 0.316841 GCGGAAAGGTGATTTGGCAA 59.683 50.000 0.00 0.00 30.80 4.52 R
4574 5614 0.036164 TACACGGGCATCTGCAAAGT 59.964 50.000 4.33 0.00 44.36 2.66 R
4836 5884 0.397941 TGGCCACAGAAGAGAACAGG 59.602 55.000 0.00 0.00 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 5.242615 TCCTATCACATGCTCACAGATCTAC 59.757 44.000 0.00 0.00 0.00 2.59
106 108 4.100189 AGGAGGGATTGATCGAACTTACAG 59.900 45.833 0.00 0.00 0.00 2.74
167 169 4.667573 AGAAGAGGAGGGAAAACAAATCC 58.332 43.478 0.00 0.00 36.16 3.01
208 210 2.202570 GAGAAGACGCGCCGCTTA 60.203 61.111 5.73 0.00 0.00 3.09
217 219 4.796231 CGCCGCTTACCTGCTCGT 62.796 66.667 0.00 0.00 0.00 4.18
222 224 1.080025 GCTTACCTGCTCGTCGGTT 60.080 57.895 0.00 0.00 34.76 4.44
232 234 0.030235 CTCGTCGGTTATGATCCGCA 59.970 55.000 0.00 0.00 46.49 5.69
267 269 1.469940 CGAAGGAGTGATTGGACGGAG 60.470 57.143 0.00 0.00 0.00 4.63
283 285 2.029828 ACGGAGAGTCTGTGTTGTGATC 60.030 50.000 0.00 0.00 34.08 2.92
289 291 0.608130 TCTGTGTTGTGATCCGAGGG 59.392 55.000 0.00 0.00 0.00 4.30
296 298 1.327690 TGTGATCCGAGGGTGGCTAC 61.328 60.000 0.00 0.00 0.00 3.58
316 318 6.209361 GCTACACAGATTGATCGATTAGACA 58.791 40.000 0.00 0.00 0.00 3.41
317 319 6.697455 GCTACACAGATTGATCGATTAGACAA 59.303 38.462 0.00 0.00 0.00 3.18
327 329 2.758979 TCGATTAGACAAGAGGTGACCC 59.241 50.000 0.00 0.00 0.00 4.46
332 334 3.425162 AGACAAGAGGTGACCCAATTC 57.575 47.619 0.00 0.00 0.00 2.17
341 343 0.774096 TGACCCAATTCCTCCCACCA 60.774 55.000 0.00 0.00 0.00 4.17
398 401 1.579964 CTGCTCGCATGAACTTGGCA 61.580 55.000 0.00 0.00 0.00 4.92
425 428 1.723128 CCCTCCCCTGCATATTGCCT 61.723 60.000 0.00 0.00 44.23 4.75
430 433 0.184451 CCCTGCATATTGCCTGAGGT 59.816 55.000 0.00 0.00 44.23 3.85
438 441 4.640201 GCATATTGCCTGAGGTTGACTAAA 59.360 41.667 0.00 0.00 37.42 1.85
468 472 3.555795 GCTGATCCAATCATTCCTAGCGA 60.556 47.826 0.00 0.00 38.85 4.93
474 478 3.181471 CCAATCATTCCTAGCGAGTCTGT 60.181 47.826 0.00 0.00 0.00 3.41
477 481 3.849911 TCATTCCTAGCGAGTCTGTTTG 58.150 45.455 0.00 0.00 0.00 2.93
478 482 3.509967 TCATTCCTAGCGAGTCTGTTTGA 59.490 43.478 0.00 0.00 0.00 2.69
479 483 4.021456 TCATTCCTAGCGAGTCTGTTTGAA 60.021 41.667 0.00 0.00 0.00 2.69
525 531 7.672983 ACAGACCAAACAATGAACATAGTAG 57.327 36.000 0.00 0.00 0.00 2.57
527 533 7.387948 ACAGACCAAACAATGAACATAGTAGAC 59.612 37.037 0.00 0.00 0.00 2.59
528 534 7.387673 CAGACCAAACAATGAACATAGTAGACA 59.612 37.037 0.00 0.00 0.00 3.41
529 535 7.936847 AGACCAAACAATGAACATAGTAGACAA 59.063 33.333 0.00 0.00 0.00 3.18
551 557 4.331108 ACCAAACAAACCAAAGTTGCATT 58.669 34.783 0.00 0.00 35.97 3.56
560 566 0.249405 AAAGTTGCATTGCACGGGTG 60.249 50.000 11.66 0.00 38.71 4.61
573 579 2.494918 GGGTGTGATCCGACCTCG 59.505 66.667 9.50 0.00 39.44 4.63
575 581 2.571757 GTGTGATCCGACCTCGCA 59.428 61.111 0.00 0.00 38.18 5.10
576 582 1.805945 GTGTGATCCGACCTCGCAC 60.806 63.158 8.89 8.89 44.16 5.34
577 583 1.977009 TGTGATCCGACCTCGCACT 60.977 57.895 0.00 0.00 38.18 4.40
599 623 2.281345 GGCTGGCATCAGATCCGG 60.281 66.667 0.00 0.00 43.49 5.14
606 630 1.300465 CATCAGATCCGGCCTCGTG 60.300 63.158 0.00 0.00 33.95 4.35
699 723 5.353111 GCACCTAGAGTAGATCAAAACCTC 58.647 45.833 0.00 0.00 0.00 3.85
719 743 1.398692 CTCGGGAGGGAGAAGAGAAG 58.601 60.000 0.00 0.00 36.08 2.85
776 805 2.588146 ATCGCGTGAACCGTACTCCG 62.588 60.000 5.77 0.00 39.32 4.63
777 806 3.177249 GCGTGAACCGTACTCCGC 61.177 66.667 0.00 0.00 39.32 5.54
778 807 2.564975 CGTGAACCGTACTCCGCT 59.435 61.111 0.00 0.00 34.38 5.52
779 808 1.513586 CGTGAACCGTACTCCGCTC 60.514 63.158 0.00 0.00 34.38 5.03
780 809 1.153881 GTGAACCGTACTCCGCTCC 60.154 63.158 0.00 0.00 34.38 4.70
781 810 1.303888 TGAACCGTACTCCGCTCCT 60.304 57.895 0.00 0.00 34.38 3.69
867 903 0.667487 ACACGCCACTCGATTCACAG 60.667 55.000 0.00 0.00 41.67 3.66
868 904 1.079819 ACGCCACTCGATTCACAGG 60.080 57.895 0.00 0.00 41.67 4.00
939 990 0.542938 ACAGAGCCACAGCCTACAGA 60.543 55.000 0.00 0.00 41.25 3.41
1243 1318 2.606519 CCCGTGGACCAAGAGGGA 60.607 66.667 20.76 0.00 44.70 4.20
1349 1430 2.284112 GTCCCCCGAGGTACCACA 60.284 66.667 15.94 0.00 36.75 4.17
1359 1442 3.047877 GTACCACACGGCACTGCC 61.048 66.667 10.35 10.35 46.75 4.85
1471 1582 2.358193 TTACTGCTCACCGTGCGTGT 62.358 55.000 0.00 0.00 43.51 4.49
1478 1589 2.888534 ACCGTGCGTGTGTGTGTC 60.889 61.111 0.00 0.00 0.00 3.67
1479 1590 2.888051 CCGTGCGTGTGTGTGTCA 60.888 61.111 0.00 0.00 0.00 3.58
1484 1595 1.348250 GCGTGTGTGTGTCACTGTG 59.652 57.895 4.27 0.17 46.27 3.66
1485 1596 1.358725 GCGTGTGTGTGTCACTGTGT 61.359 55.000 7.79 0.00 46.27 3.72
1486 1597 0.645355 CGTGTGTGTGTCACTGTGTC 59.355 55.000 7.79 2.66 46.27 3.67
1487 1598 1.735700 CGTGTGTGTGTCACTGTGTCT 60.736 52.381 7.79 0.00 46.27 3.41
1488 1599 1.660607 GTGTGTGTGTCACTGTGTCTG 59.339 52.381 7.79 0.00 46.27 3.51
1489 1600 0.652592 GTGTGTGTCACTGTGTCTGC 59.347 55.000 7.79 1.18 43.13 4.26
1495 1606 1.143838 TCACTGTGTCTGCGCACTT 59.856 52.632 5.66 0.00 39.89 3.16
1546 1657 1.768077 CTCCCCCATCCCTCCACTC 60.768 68.421 0.00 0.00 0.00 3.51
1595 1706 1.380280 TGGCTAGGGCTAGGAGGGAT 61.380 60.000 0.00 0.00 38.73 3.85
1670 1781 2.418083 CCGCCCATTTCTTGCCTCC 61.418 63.158 0.00 0.00 0.00 4.30
1678 1789 5.178061 CCCATTTCTTGCCTCCATTTTTAC 58.822 41.667 0.00 0.00 0.00 2.01
1681 1792 1.816224 TCTTGCCTCCATTTTTACGGC 59.184 47.619 0.00 0.00 41.06 5.68
1698 1810 1.471676 CGGCGGCTCTGAAAGTATCTT 60.472 52.381 7.61 0.00 33.76 2.40
1720 1860 6.939730 TCTTAACATACACATCAAAGGAGCAA 59.060 34.615 0.00 0.00 0.00 3.91
1737 1877 1.981254 CAAATTTTGATCCGCAGCGT 58.019 45.000 15.05 0.00 0.00 5.07
1740 1880 0.729116 ATTTTGATCCGCAGCGTCAG 59.271 50.000 15.05 0.00 0.00 3.51
1821 1970 2.076863 GGCAGCGTATCCATCCATTAC 58.923 52.381 0.00 0.00 0.00 1.89
1867 2016 4.036262 TCCAAACTCGGAAACAACTCATTG 59.964 41.667 0.00 0.00 35.38 2.82
1895 2044 0.460311 GGTCGGGATGTGTCCTACTG 59.540 60.000 0.00 0.00 44.44 2.74
1930 2082 3.496130 CACAAGTCTCTGTTAAGCCACAG 59.504 47.826 2.51 2.51 44.96 3.66
1945 2097 3.969899 GCCACAGCTCATTTAATTAGCC 58.030 45.455 7.42 0.00 36.92 3.93
1946 2098 3.243535 GCCACAGCTCATTTAATTAGCCC 60.244 47.826 7.42 0.00 36.92 5.19
2025 2177 5.263968 TCGATTTCTCCTGTCAGATTACC 57.736 43.478 0.00 0.00 0.00 2.85
2031 2183 5.769484 TCTCCTGTCAGATTACCGATTAC 57.231 43.478 0.00 0.00 0.00 1.89
2040 2192 6.154706 GTCAGATTACCGATTACCCCTATCAT 59.845 42.308 0.00 0.00 0.00 2.45
2041 2193 6.380274 TCAGATTACCGATTACCCCTATCATC 59.620 42.308 0.00 0.00 0.00 2.92
2042 2194 6.154534 CAGATTACCGATTACCCCTATCATCA 59.845 42.308 0.00 0.00 0.00 3.07
2073 2225 5.530519 TGTCTCAACAGTTAATCATTCGC 57.469 39.130 0.00 0.00 0.00 4.70
2152 2304 3.057456 AGCTAGGGTAGATTGATTACGCG 60.057 47.826 3.53 3.53 38.54 6.01
2153 2305 3.057736 GCTAGGGTAGATTGATTACGCGA 60.058 47.826 15.93 0.00 38.54 5.87
2169 2321 1.334870 CGCGAGTGGATCTCTCTGATG 60.335 57.143 0.00 3.40 40.75 3.07
2170 2322 1.680735 GCGAGTGGATCTCTCTGATGT 59.319 52.381 13.44 0.00 40.75 3.06
2171 2323 2.881513 GCGAGTGGATCTCTCTGATGTA 59.118 50.000 13.44 0.00 40.75 2.29
2205 2357 5.877012 TCATTTCTATCCTTCTGTGTTCTGC 59.123 40.000 0.00 0.00 0.00 4.26
2280 2432 7.953005 TGTCCATTTTGTATGGTGTGATATT 57.047 32.000 3.89 0.00 40.06 1.28
2281 2433 8.359875 TGTCCATTTTGTATGGTGTGATATTT 57.640 30.769 3.89 0.00 40.06 1.40
2282 2434 9.467796 TGTCCATTTTGTATGGTGTGATATTTA 57.532 29.630 3.89 0.00 40.06 1.40
2337 2492 5.796424 AAGATCATGGGTTATGGAATTGC 57.204 39.130 0.00 0.00 37.39 3.56
2408 2563 2.693069 CACCTCACAGCAAGGTCTAAG 58.307 52.381 0.00 0.00 45.48 2.18
2420 2575 4.757149 GCAAGGTCTAAGTCACATTCTTGT 59.243 41.667 0.00 0.00 36.15 3.16
2428 2583 7.113965 GTCTAAGTCACATTCTTGTTTGCAATG 59.886 37.037 0.00 0.00 32.34 2.82
2432 2587 5.519566 GTCACATTCTTGTTTGCAATGTTGA 59.480 36.000 0.00 0.00 38.43 3.18
2435 2590 7.280428 TCACATTCTTGTTTGCAATGTTGATTT 59.720 29.630 0.00 0.00 38.43 2.17
2451 2606 5.068460 TGTTGATTTTCCATCCAAAACTCGT 59.932 36.000 0.00 0.00 0.00 4.18
2460 2615 0.307760 CCAAAACTCGTCAGCCACAC 59.692 55.000 0.00 0.00 0.00 3.82
2478 2633 2.593978 CCTGCAGGTCCCAGATGG 59.406 66.667 25.53 0.00 32.03 3.51
2568 2724 6.090763 CACAATTTACTTCGAGATGTAGTGCA 59.909 38.462 0.00 0.00 30.13 4.57
2582 2738 0.033796 AGTGCACCCCATCATGGAAG 60.034 55.000 14.63 0.00 40.96 3.46
2584 2740 0.409092 TGCACCCCATCATGGAAGTT 59.591 50.000 4.75 0.00 40.96 2.66
2592 2748 4.410228 CCCCATCATGGAAGTTAAGAGAGA 59.590 45.833 4.75 0.00 40.96 3.10
2593 2749 5.454471 CCCCATCATGGAAGTTAAGAGAGAG 60.454 48.000 4.75 0.00 40.96 3.20
2598 2754 7.724490 TCATGGAAGTTAAGAGAGAGATCAA 57.276 36.000 0.00 0.00 0.00 2.57
2614 2770 9.163894 AGAGAGATCAATTAATTAGACATGGGA 57.836 33.333 0.00 0.00 0.00 4.37
2615 2771 9.784531 GAGAGATCAATTAATTAGACATGGGAA 57.215 33.333 0.00 0.00 0.00 3.97
2618 2774 9.305555 AGATCAATTAATTAGACATGGGAATGG 57.694 33.333 0.00 0.00 0.00 3.16
2619 2775 7.838079 TCAATTAATTAGACATGGGAATGGG 57.162 36.000 0.00 0.00 0.00 4.00
2636 2792 0.606604 GGGAGGAGCGTTGAAGTACA 59.393 55.000 0.00 0.00 0.00 2.90
2653 2809 6.488344 TGAAGTACAAAGCATAAATGGTGTCA 59.512 34.615 0.00 0.00 38.70 3.58
2660 2816 5.571784 AGCATAAATGGTGTCATTGTCTG 57.428 39.130 0.00 0.00 42.29 3.51
2671 2827 5.053145 GTGTCATTGTCTGAGAACTTGACT 58.947 41.667 17.04 0.00 35.67 3.41
2673 2829 6.701841 GTGTCATTGTCTGAGAACTTGACTTA 59.298 38.462 17.04 1.97 35.67 2.24
2674 2830 7.224753 GTGTCATTGTCTGAGAACTTGACTTAA 59.775 37.037 17.04 1.45 35.67 1.85
2675 2831 7.224753 TGTCATTGTCTGAGAACTTGACTTAAC 59.775 37.037 17.04 0.00 35.67 2.01
2676 2832 6.706270 TCATTGTCTGAGAACTTGACTTAACC 59.294 38.462 0.00 0.00 0.00 2.85
2677 2833 4.957296 TGTCTGAGAACTTGACTTAACCC 58.043 43.478 0.00 0.00 0.00 4.11
2678 2834 4.654262 TGTCTGAGAACTTGACTTAACCCT 59.346 41.667 0.00 0.00 0.00 4.34
2679 2835 5.130477 TGTCTGAGAACTTGACTTAACCCTT 59.870 40.000 0.00 0.00 0.00 3.95
2680 2836 6.325545 TGTCTGAGAACTTGACTTAACCCTTA 59.674 38.462 0.00 0.00 0.00 2.69
2681 2837 6.869388 GTCTGAGAACTTGACTTAACCCTTAG 59.131 42.308 0.00 0.00 0.00 2.18
2682 2838 6.781014 TCTGAGAACTTGACTTAACCCTTAGA 59.219 38.462 0.00 0.00 0.00 2.10
2683 2839 7.289317 TCTGAGAACTTGACTTAACCCTTAGAA 59.711 37.037 0.00 0.00 0.00 2.10
2694 2850 8.507524 ACTTAACCCTTAGAATTTGATGCTAC 57.492 34.615 0.00 0.00 0.00 3.58
2731 2888 0.601311 GTGGTTGTCTCTTGCTCGCT 60.601 55.000 0.00 0.00 0.00 4.93
2732 2889 0.966179 TGGTTGTCTCTTGCTCGCTA 59.034 50.000 0.00 0.00 0.00 4.26
2754 2913 1.079127 GCACCGTACCATGAGCTGT 60.079 57.895 0.00 0.00 0.00 4.40
2777 2936 1.228245 AGCCATGCTCACACGGTTT 60.228 52.632 0.00 0.00 30.62 3.27
2778 2937 1.081242 GCCATGCTCACACGGTTTG 60.081 57.895 0.00 0.00 0.00 2.93
2779 2938 1.081242 CCATGCTCACACGGTTTGC 60.081 57.895 0.00 0.00 0.00 3.68
2781 2940 1.228245 ATGCTCACACGGTTTGCCT 60.228 52.632 0.00 0.00 0.00 4.75
2783 2942 2.954753 GCTCACACGGTTTGCCTCG 61.955 63.158 0.00 0.00 0.00 4.63
2784 2943 2.280524 TCACACGGTTTGCCTCGG 60.281 61.111 0.00 0.00 0.00 4.63
2787 2946 3.353836 CACGGTTTGCCTCGGTGG 61.354 66.667 0.00 0.00 39.35 4.61
2795 2954 3.127533 GCCTCGGTGGTGCATGAC 61.128 66.667 0.00 0.00 38.35 3.06
2798 2957 0.249120 CCTCGGTGGTGCATGACTAA 59.751 55.000 0.00 0.00 0.00 2.24
2800 2959 0.391130 TCGGTGGTGCATGACTAAGC 60.391 55.000 0.00 0.00 0.00 3.09
2801 2960 0.391661 CGGTGGTGCATGACTAAGCT 60.392 55.000 0.00 0.00 0.00 3.74
2803 2962 1.373570 GTGGTGCATGACTAAGCTCC 58.626 55.000 0.00 0.00 42.96 4.70
2808 2967 2.349886 GTGCATGACTAAGCTCCTTTCG 59.650 50.000 0.00 0.00 0.00 3.46
2809 2968 2.028112 TGCATGACTAAGCTCCTTTCGT 60.028 45.455 0.00 0.00 0.00 3.85
2822 2983 3.876589 TTTCGTGCTCCCGCTGGTC 62.877 63.158 0.00 0.00 36.97 4.02
2832 2995 4.910585 CGCTGGTCGGCATACCCC 62.911 72.222 4.41 0.00 38.90 4.95
2861 3024 0.464735 TAGTTGTGCCGCCTGTTTGT 60.465 50.000 0.00 0.00 0.00 2.83
2867 3030 1.657181 GCCGCCTGTTTGTTGTTCG 60.657 57.895 0.00 0.00 0.00 3.95
2869 3032 1.355210 CGCCTGTTTGTTGTTCGCT 59.645 52.632 0.00 0.00 0.00 4.93
2872 3035 1.597937 GCCTGTTTGTTGTTCGCTGAG 60.598 52.381 0.00 0.00 0.00 3.35
2880 3043 3.930336 TGTTGTTCGCTGAGAGATTGAT 58.070 40.909 0.00 0.00 0.00 2.57
2886 3049 1.873069 CGCTGAGAGATTGATGGAGGC 60.873 57.143 0.00 0.00 0.00 4.70
2890 3053 3.031013 TGAGAGATTGATGGAGGCGTTA 58.969 45.455 0.00 0.00 0.00 3.18
2891 3054 3.068732 TGAGAGATTGATGGAGGCGTTAG 59.931 47.826 0.00 0.00 0.00 2.34
2892 3055 2.366916 AGAGATTGATGGAGGCGTTAGG 59.633 50.000 0.00 0.00 0.00 2.69
2899 3062 2.368011 GGAGGCGTTAGGGGCTTCT 61.368 63.158 0.00 0.00 43.66 2.85
2903 3066 0.251073 GGCGTTAGGGGCTTCTGTAA 59.749 55.000 0.00 0.00 0.00 2.41
2907 3070 3.869065 CGTTAGGGGCTTCTGTAATCAA 58.131 45.455 0.00 0.00 0.00 2.57
2909 3072 4.382685 CGTTAGGGGCTTCTGTAATCAAGA 60.383 45.833 0.00 0.00 0.00 3.02
2913 3076 3.137360 GGGGCTTCTGTAATCAAGAGGAT 59.863 47.826 0.00 0.00 38.05 3.24
2918 3081 5.523188 GCTTCTGTAATCAAGAGGATGAGTG 59.477 44.000 0.00 0.00 36.02 3.51
2924 3087 4.916041 ATCAAGAGGATGAGTGGTTTGA 57.084 40.909 0.00 0.00 34.06 2.69
2925 3088 4.008074 TCAAGAGGATGAGTGGTTTGAC 57.992 45.455 0.00 0.00 0.00 3.18
2926 3089 2.738846 CAAGAGGATGAGTGGTTTGACG 59.261 50.000 0.00 0.00 0.00 4.35
2927 3090 1.971357 AGAGGATGAGTGGTTTGACGT 59.029 47.619 0.00 0.00 0.00 4.34
2928 3091 2.069273 GAGGATGAGTGGTTTGACGTG 58.931 52.381 0.00 0.00 0.00 4.49
2929 3092 0.517316 GGATGAGTGGTTTGACGTGC 59.483 55.000 0.00 0.00 0.00 5.34
2930 3093 1.225855 GATGAGTGGTTTGACGTGCA 58.774 50.000 0.00 0.00 0.00 4.57
2931 3094 1.195448 GATGAGTGGTTTGACGTGCAG 59.805 52.381 0.00 0.00 0.00 4.41
2932 3095 1.279840 GAGTGGTTTGACGTGCAGC 59.720 57.895 0.00 0.00 0.00 5.25
2942 3105 4.348081 CGTGCAGCGTGCTAAATG 57.652 55.556 10.54 0.00 45.31 2.32
2943 3106 1.787215 CGTGCAGCGTGCTAAATGA 59.213 52.632 10.54 0.00 45.31 2.57
2944 3107 0.165727 CGTGCAGCGTGCTAAATGAA 59.834 50.000 10.54 0.00 45.31 2.57
2945 3108 1.202065 CGTGCAGCGTGCTAAATGAAT 60.202 47.619 10.54 0.00 45.31 2.57
2946 3109 2.179589 GTGCAGCGTGCTAAATGAATG 58.820 47.619 10.54 0.00 45.31 2.67
2947 3110 2.083002 TGCAGCGTGCTAAATGAATGA 58.917 42.857 10.54 0.00 45.31 2.57
2948 3111 2.096335 TGCAGCGTGCTAAATGAATGAG 59.904 45.455 10.54 0.00 45.31 2.90
2949 3112 2.713011 CAGCGTGCTAAATGAATGAGC 58.287 47.619 0.00 0.00 36.72 4.26
2954 3117 0.040958 GCTAAATGAATGAGCGGGCG 60.041 55.000 0.00 0.00 0.00 6.13
2985 3154 6.182507 AGTGTTGTGAATTAAGGAGTGGTA 57.817 37.500 0.00 0.00 0.00 3.25
3007 3176 9.699410 TGGTATGGACTGAAATAATTTGAGAAT 57.301 29.630 0.00 0.00 0.00 2.40
3027 3196 7.491372 TGAGAATAAGTACAAAGTATCTTGCCG 59.509 37.037 0.00 0.00 0.00 5.69
3029 3202 8.204836 AGAATAAGTACAAAGTATCTTGCCGAT 58.795 33.333 0.00 0.00 36.11 4.18
3040 3213 7.997773 AGTATCTTGCCGATCTGTAGTATAA 57.002 36.000 0.00 0.00 33.48 0.98
3050 3223 6.527023 CCGATCTGTAGTATAAACGCCTAATG 59.473 42.308 0.00 0.00 0.00 1.90
3052 3225 8.232513 CGATCTGTAGTATAAACGCCTAATGTA 58.767 37.037 0.00 0.00 0.00 2.29
3054 3227 7.651808 TCTGTAGTATAAACGCCTAATGTACC 58.348 38.462 0.00 0.00 0.00 3.34
3055 3228 7.503566 TCTGTAGTATAAACGCCTAATGTACCT 59.496 37.037 0.00 0.00 0.00 3.08
3065 3238 8.524870 AACGCCTAATGTACCTAATAAATACG 57.475 34.615 0.00 0.00 0.00 3.06
3066 3239 7.661040 ACGCCTAATGTACCTAATAAATACGT 58.339 34.615 0.00 0.00 0.00 3.57
3067 3240 7.596248 ACGCCTAATGTACCTAATAAATACGTG 59.404 37.037 0.00 0.00 0.00 4.49
3128 3379 4.787551 TGTACTTCCATGACCTTTTGTGT 58.212 39.130 0.00 0.00 0.00 3.72
3132 3383 3.593442 TCCATGACCTTTTGTGTCCTT 57.407 42.857 0.00 0.00 31.60 3.36
3133 3384 3.221771 TCCATGACCTTTTGTGTCCTTG 58.778 45.455 0.00 0.00 31.60 3.61
3165 3416 4.894784 CCAGCTTCTGTTTCTGGTAGTAA 58.105 43.478 0.00 0.00 41.76 2.24
3188 3439 3.328505 CAAATGGTGGCCAAGAACAATC 58.671 45.455 7.24 0.00 36.95 2.67
3189 3440 2.610438 ATGGTGGCCAAGAACAATCT 57.390 45.000 7.24 0.00 36.95 2.40
3190 3441 2.380064 TGGTGGCCAAGAACAATCTT 57.620 45.000 7.24 0.00 46.91 2.40
3206 3529 6.432607 ACAATCTTGTGTGCTATTCATGAG 57.567 37.500 0.00 0.00 40.49 2.90
3286 3645 2.811317 GAGGTTGACTGAGCGCCG 60.811 66.667 2.29 0.00 0.00 6.46
3296 3659 1.225855 CTGAGCGCCGCCAAAATATA 58.774 50.000 4.98 0.00 0.00 0.86
3297 3660 1.601903 CTGAGCGCCGCCAAAATATAA 59.398 47.619 4.98 0.00 0.00 0.98
3298 3661 2.017782 TGAGCGCCGCCAAAATATAAA 58.982 42.857 4.98 0.00 0.00 1.40
3299 3662 2.423892 TGAGCGCCGCCAAAATATAAAA 59.576 40.909 4.98 0.00 0.00 1.52
3300 3663 3.067461 TGAGCGCCGCCAAAATATAAAAT 59.933 39.130 4.98 0.00 0.00 1.82
3301 3664 4.048504 GAGCGCCGCCAAAATATAAAATT 58.951 39.130 4.98 0.00 0.00 1.82
3302 3665 4.438148 AGCGCCGCCAAAATATAAAATTT 58.562 34.783 4.98 0.00 0.00 1.82
3366 3732 7.990886 ACCTTTCCGCTATGATATAGAAAAACA 59.009 33.333 0.21 0.00 0.00 2.83
3388 3754 7.643569 ACAAAATGATATATCACCTGTTGCA 57.356 32.000 17.60 0.00 40.03 4.08
3402 3768 2.169352 CTGTTGCAGACCCTGTATAGCT 59.831 50.000 0.00 0.00 32.44 3.32
3420 3786 1.868498 GCTGTGTAACGTGCCAAGTAA 59.132 47.619 0.00 0.00 42.39 2.24
3424 3790 3.940221 TGTGTAACGTGCCAAGTAAAAGT 59.060 39.130 0.00 0.00 42.39 2.66
3437 3803 6.373216 GCCAAGTAAAAGTCACCACATACATA 59.627 38.462 0.00 0.00 0.00 2.29
3438 3804 7.625606 GCCAAGTAAAAGTCACCACATACATAC 60.626 40.741 0.00 0.00 0.00 2.39
3487 3853 6.318144 AGTGTCATATGAAAGCTTCTTCCATG 59.682 38.462 7.07 1.87 0.00 3.66
3536 3910 4.098416 GCATCGGTTATTGAGCTTTGTTC 58.902 43.478 0.00 0.00 0.00 3.18
3537 3911 4.379394 GCATCGGTTATTGAGCTTTGTTCA 60.379 41.667 0.00 0.00 0.00 3.18
3573 3948 5.370880 AGGAAGGTTGTCATCCAGCTATTAT 59.629 40.000 2.77 0.00 35.62 1.28
3574 3949 5.471456 GGAAGGTTGTCATCCAGCTATTATG 59.529 44.000 2.77 0.00 33.30 1.90
3667 4042 8.648698 TTCCATCCAAGTTCAGATAAATTTCA 57.351 30.769 0.00 0.00 0.00 2.69
3669 4044 7.890127 TCCATCCAAGTTCAGATAAATTTCAGT 59.110 33.333 0.00 0.00 0.00 3.41
3748 4129 6.197842 GCTCTTGCATTATTCAAGTTGCATAC 59.802 38.462 14.87 0.00 43.91 2.39
3767 4191 1.332195 CCATAGTGGGATCTGCTCGA 58.668 55.000 0.00 0.00 32.67 4.04
3822 4247 2.677524 GCTGGATGGCAGCCACAA 60.678 61.111 22.63 4.11 39.61 3.33
3855 4280 2.180276 GGGCAGAAGACTGGAGAAGTA 58.820 52.381 0.00 0.00 43.62 2.24
3856 4281 2.769095 GGGCAGAAGACTGGAGAAGTAT 59.231 50.000 0.00 0.00 43.62 2.12
3935 4360 4.924625 TGCTTGCCCCTAATACAAGTAAA 58.075 39.130 0.00 0.00 42.20 2.01
3939 4364 6.294843 GCTTGCCCCTAATACAAGTAAACAAA 60.295 38.462 0.00 0.00 42.20 2.83
4108 4598 8.784994 TGGATGATGGAAATTCAAATGTTTTTG 58.215 29.630 0.00 0.00 42.98 2.44
4153 4649 5.012148 ACTTCAGTGATTAGGTTGTAGCTGT 59.988 40.000 0.00 0.00 0.00 4.40
4231 5045 5.629079 AGTAACTCTAAAGCAATGGCAAC 57.371 39.130 0.00 0.00 44.61 4.17
4303 5117 4.516698 TCTTCTGTTCTCTTGTGCCATTTC 59.483 41.667 0.00 0.00 0.00 2.17
4325 5139 5.324409 TCTGGAACTTGTTTGCCTGAATAT 58.676 37.500 0.00 0.00 0.00 1.28
4373 5193 9.190858 TCATTATTTGTGTCAATTTTACACTGC 57.809 29.630 17.43 0.00 45.95 4.40
4391 5245 0.523335 GCTTGGGCTTATTCGCGTTG 60.523 55.000 5.77 0.00 35.22 4.10
4488 5520 2.171448 ACATCCCTATTCCTGACTGCAC 59.829 50.000 0.00 0.00 0.00 4.57
4556 5596 8.433126 GTTCAGTACATACACATTGTTACTGAC 58.567 37.037 20.22 14.41 37.40 3.51
4574 5614 9.778993 GTTACTGACTACTTCGTTTATATGTGA 57.221 33.333 0.00 0.00 0.00 3.58
4714 5754 2.282462 CACCAGCCCGCTCCTTTT 60.282 61.111 0.00 0.00 0.00 2.27
4733 5773 1.314534 TGCCGGTTCCTCGTCGAATA 61.315 55.000 1.90 0.00 0.00 1.75
4748 5788 4.473199 GTCGAATACGTGCTAGCATATGA 58.527 43.478 22.51 9.38 40.69 2.15
4772 5812 2.432628 GACCGGAACACCGCTCTG 60.433 66.667 9.46 0.00 44.70 3.35
4777 5817 4.329545 GAACACCGCTCTGCCCCA 62.330 66.667 0.00 0.00 0.00 4.96
4793 5833 1.214305 CCCACCATCCAAGGGAAGGA 61.214 60.000 13.09 0.00 42.60 3.36
4795 5835 0.394899 CACCATCCAAGGGAAGGAGC 60.395 60.000 13.09 0.00 42.60 4.70
4842 5890 2.034221 GGGAGCACACCCCTGTTC 59.966 66.667 0.00 0.00 43.81 3.18
4858 5907 0.807496 GTTCTCTTCTGTGGCCATGC 59.193 55.000 9.72 0.00 0.00 4.06
4990 6039 2.197605 GGAGAGGAGCGGCTAGTCC 61.198 68.421 0.60 0.00 0.00 3.85
5020 6069 1.029408 TGGAATTGTTGCCGATCCCG 61.029 55.000 0.00 0.00 0.00 5.14
5050 6134 4.740695 CGGCTACTAGTGTTTAGATGCTTC 59.259 45.833 5.39 0.00 0.00 3.86
5061 6145 1.878953 AGATGCTTCCGTTGTCGTTT 58.121 45.000 0.00 0.00 35.01 3.60
5094 6181 2.723322 AGATGTGTGTCATGGATGGG 57.277 50.000 0.00 0.00 36.83 4.00
5106 6193 0.892755 TGGATGGGTGTACACGTCTC 59.107 55.000 19.41 14.17 35.65 3.36
5170 6257 2.204151 CCCCTGGGAGACTTGGGT 60.204 66.667 16.20 0.00 39.88 4.51
5172 6259 1.685820 CCCTGGGAGACTTGGGTTC 59.314 63.158 7.01 0.00 37.80 3.62
5228 6315 2.194859 CTAGGCAGGCATGGAGGATAT 58.805 52.381 0.00 0.00 0.00 1.63
5252 6339 3.576648 GAAAGGGTGTGTCTAGAACTCG 58.423 50.000 0.00 0.00 0.00 4.18
5253 6340 1.546961 AGGGTGTGTCTAGAACTCGG 58.453 55.000 0.00 0.00 0.00 4.63
5297 6384 1.429423 GCTGGATGCTACAAACGGC 59.571 57.895 0.00 0.00 38.95 5.68
5367 6454 8.534333 TCTAACTAAAATGCTACAACTGTCAG 57.466 34.615 0.00 0.00 0.00 3.51
5383 6470 2.224843 TGTCAGTGAAGGATGTTGCCAT 60.225 45.455 0.00 0.00 0.00 4.40
5402 6489 4.119862 CCATCGGTGATATCACGAAAGTT 58.880 43.478 25.65 11.13 46.40 2.66
5403 6490 4.025730 CCATCGGTGATATCACGAAAGTTG 60.026 45.833 25.65 19.17 46.40 3.16
5404 6491 4.182693 TCGGTGATATCACGAAAGTTGT 57.817 40.909 25.65 0.00 46.40 3.32
5405 6492 3.924073 TCGGTGATATCACGAAAGTTGTG 59.076 43.478 25.65 9.53 46.40 3.33
5406 6493 3.062099 CGGTGATATCACGAAAGTTGTGG 59.938 47.826 25.65 4.80 46.40 4.17
5407 6494 3.181510 GGTGATATCACGAAAGTTGTGGC 60.182 47.826 25.65 7.08 46.40 5.01
5408 6495 3.684788 GTGATATCACGAAAGTTGTGGCT 59.315 43.478 19.63 0.00 46.40 4.75
5409 6496 4.868171 GTGATATCACGAAAGTTGTGGCTA 59.132 41.667 19.63 0.00 46.40 3.93
5410 6497 5.005779 GTGATATCACGAAAGTTGTGGCTAG 59.994 44.000 19.63 0.00 46.40 3.42
5411 6498 2.902705 TCACGAAAGTTGTGGCTAGT 57.097 45.000 0.00 0.00 46.40 2.57
5412 6499 2.750948 TCACGAAAGTTGTGGCTAGTC 58.249 47.619 0.00 0.00 46.40 2.59
5413 6500 2.101750 TCACGAAAGTTGTGGCTAGTCA 59.898 45.455 0.00 0.00 46.40 3.41
5414 6501 3.067106 CACGAAAGTTGTGGCTAGTCAT 58.933 45.455 0.00 0.00 46.40 3.06
5415 6502 3.498397 CACGAAAGTTGTGGCTAGTCATT 59.502 43.478 0.00 0.00 46.40 2.57
5416 6503 4.024048 CACGAAAGTTGTGGCTAGTCATTT 60.024 41.667 0.00 0.00 46.40 2.32
5417 6504 4.578928 ACGAAAGTTGTGGCTAGTCATTTT 59.421 37.500 0.00 0.00 46.40 1.82
5418 6505 5.067283 ACGAAAGTTGTGGCTAGTCATTTTT 59.933 36.000 0.00 0.00 46.40 1.94
5419 6506 5.625311 CGAAAGTTGTGGCTAGTCATTTTTC 59.375 40.000 0.00 7.82 0.00 2.29
5420 6507 6.463995 AAAGTTGTGGCTAGTCATTTTTCA 57.536 33.333 0.00 0.00 0.00 2.69
5421 6508 6.655078 AAGTTGTGGCTAGTCATTTTTCAT 57.345 33.333 0.00 0.00 0.00 2.57
5422 6509 6.655078 AGTTGTGGCTAGTCATTTTTCATT 57.345 33.333 0.00 0.00 0.00 2.57
5423 6510 7.054491 AGTTGTGGCTAGTCATTTTTCATTT 57.946 32.000 0.00 0.00 0.00 2.32
5424 6511 7.500141 AGTTGTGGCTAGTCATTTTTCATTTT 58.500 30.769 0.00 0.00 0.00 1.82
5425 6512 7.986889 AGTTGTGGCTAGTCATTTTTCATTTTT 59.013 29.630 0.00 0.00 0.00 1.94
5426 6513 7.945033 TGTGGCTAGTCATTTTTCATTTTTC 57.055 32.000 0.00 0.00 0.00 2.29
5427 6514 7.495901 TGTGGCTAGTCATTTTTCATTTTTCA 58.504 30.769 0.00 0.00 0.00 2.69
5428 6515 7.437862 TGTGGCTAGTCATTTTTCATTTTTCAC 59.562 33.333 0.00 0.00 0.00 3.18
5429 6516 7.653311 GTGGCTAGTCATTTTTCATTTTTCACT 59.347 33.333 0.00 0.00 0.00 3.41
5430 6517 8.855110 TGGCTAGTCATTTTTCATTTTTCACTA 58.145 29.630 0.00 0.00 0.00 2.74
5431 6518 9.346725 GGCTAGTCATTTTTCATTTTTCACTAG 57.653 33.333 0.00 0.00 35.78 2.57
5432 6519 9.899226 GCTAGTCATTTTTCATTTTTCACTAGT 57.101 29.630 0.00 0.00 35.34 2.57
5448 6535 8.741603 TTTCACTAGTGTATAAAATAAGGGCC 57.258 34.615 21.99 0.00 0.00 5.80
5449 6536 7.685849 TCACTAGTGTATAAAATAAGGGCCT 57.314 36.000 21.99 0.00 0.00 5.19
5450 6537 7.506114 TCACTAGTGTATAAAATAAGGGCCTG 58.494 38.462 21.99 0.00 0.00 4.85
5451 6538 7.126726 TCACTAGTGTATAAAATAAGGGCCTGT 59.873 37.037 21.99 0.00 0.00 4.00
5452 6539 7.773690 CACTAGTGTATAAAATAAGGGCCTGTT 59.226 37.037 15.06 2.03 0.00 3.16
5453 6540 8.333984 ACTAGTGTATAAAATAAGGGCCTGTTT 58.666 33.333 6.92 9.22 0.00 2.83
5454 6541 7.404671 AGTGTATAAAATAAGGGCCTGTTTG 57.595 36.000 6.92 0.00 0.00 2.93
5455 6542 6.379988 AGTGTATAAAATAAGGGCCTGTTTGG 59.620 38.462 6.92 0.00 39.35 3.28
5456 6543 6.153851 GTGTATAAAATAAGGGCCTGTTTGGT 59.846 38.462 6.92 7.00 38.35 3.67
5457 6544 6.726764 TGTATAAAATAAGGGCCTGTTTGGTT 59.273 34.615 6.92 0.00 38.35 3.67
5458 6545 6.696042 ATAAAATAAGGGCCTGTTTGGTTT 57.304 33.333 6.92 5.04 38.35 3.27
5459 6546 4.617253 AAATAAGGGCCTGTTTGGTTTC 57.383 40.909 6.92 0.00 38.35 2.78
5460 6547 2.757894 TAAGGGCCTGTTTGGTTTCA 57.242 45.000 6.92 0.00 38.35 2.69
5461 6548 1.872773 AAGGGCCTGTTTGGTTTCAA 58.127 45.000 6.92 0.00 38.35 2.69
5462 6549 1.872773 AGGGCCTGTTTGGTTTCAAA 58.127 45.000 4.50 0.00 40.23 2.69
5463 6550 2.407562 AGGGCCTGTTTGGTTTCAAAT 58.592 42.857 4.50 0.00 43.73 2.32
5464 6551 3.582164 AGGGCCTGTTTGGTTTCAAATA 58.418 40.909 4.50 0.00 43.73 1.40
5465 6552 3.970640 AGGGCCTGTTTGGTTTCAAATAA 59.029 39.130 4.50 0.00 43.73 1.40
5466 6553 4.040339 AGGGCCTGTTTGGTTTCAAATAAG 59.960 41.667 4.50 0.00 43.73 1.73
5467 6554 4.202315 GGGCCTGTTTGGTTTCAAATAAGT 60.202 41.667 0.84 0.00 43.73 2.24
5468 6555 5.364778 GGCCTGTTTGGTTTCAAATAAGTT 58.635 37.500 0.00 0.00 43.73 2.66
5469 6556 6.463190 GGGCCTGTTTGGTTTCAAATAAGTTA 60.463 38.462 0.84 0.00 43.73 2.24
5470 6557 7.158697 GGCCTGTTTGGTTTCAAATAAGTTAT 58.841 34.615 0.00 0.00 43.73 1.89
5471 6558 7.330946 GGCCTGTTTGGTTTCAAATAAGTTATC 59.669 37.037 0.00 0.00 43.73 1.75
5472 6559 7.870445 GCCTGTTTGGTTTCAAATAAGTTATCA 59.130 33.333 0.00 0.00 43.73 2.15
5473 6560 9.757227 CCTGTTTGGTTTCAAATAAGTTATCAA 57.243 29.630 0.00 0.00 43.73 2.57
5550 6637 7.484035 CTTATAAGTCATAAGTTGCTCCACC 57.516 40.000 4.18 0.00 40.84 4.61
5551 6638 2.789409 AGTCATAAGTTGCTCCACCC 57.211 50.000 0.00 0.00 0.00 4.61
5552 6639 1.282157 AGTCATAAGTTGCTCCACCCC 59.718 52.381 0.00 0.00 0.00 4.95
5553 6640 1.004277 GTCATAAGTTGCTCCACCCCA 59.996 52.381 0.00 0.00 0.00 4.96
5554 6641 1.707989 TCATAAGTTGCTCCACCCCAA 59.292 47.619 0.00 0.00 0.00 4.12
5555 6642 1.818674 CATAAGTTGCTCCACCCCAAC 59.181 52.381 0.00 0.00 41.13 3.77
5556 6643 3.674278 AGTTGCTCCACCCCAACT 58.326 55.556 0.56 0.56 44.86 3.16
5557 6644 1.930520 AGTTGCTCCACCCCAACTT 59.069 52.632 0.56 0.00 46.86 2.66
5558 6645 1.145571 AGTTGCTCCACCCCAACTTA 58.854 50.000 0.56 0.00 46.86 2.24
5559 6646 1.497286 AGTTGCTCCACCCCAACTTAA 59.503 47.619 0.56 0.00 46.86 1.85
5560 6647 2.091555 AGTTGCTCCACCCCAACTTAAA 60.092 45.455 0.56 0.00 46.86 1.52
5561 6648 2.696187 GTTGCTCCACCCCAACTTAAAA 59.304 45.455 0.00 0.00 38.55 1.52
5562 6649 2.312390 TGCTCCACCCCAACTTAAAAC 58.688 47.619 0.00 0.00 0.00 2.43
5563 6650 2.091555 TGCTCCACCCCAACTTAAAACT 60.092 45.455 0.00 0.00 0.00 2.66
5564 6651 2.296190 GCTCCACCCCAACTTAAAACTG 59.704 50.000 0.00 0.00 0.00 3.16
5565 6652 2.890945 CTCCACCCCAACTTAAAACTGG 59.109 50.000 0.00 0.00 0.00 4.00
5566 6653 2.245287 TCCACCCCAACTTAAAACTGGT 59.755 45.455 0.00 0.00 0.00 4.00
5567 6654 3.462579 TCCACCCCAACTTAAAACTGGTA 59.537 43.478 0.00 0.00 0.00 3.25
5568 6655 4.079327 TCCACCCCAACTTAAAACTGGTAA 60.079 41.667 0.00 0.00 0.00 2.85
5569 6656 4.279922 CCACCCCAACTTAAAACTGGTAAG 59.720 45.833 0.00 0.00 35.16 2.34
5570 6657 4.891168 CACCCCAACTTAAAACTGGTAAGT 59.109 41.667 0.00 0.00 42.30 2.24
5571 6658 5.009310 CACCCCAACTTAAAACTGGTAAGTC 59.991 44.000 0.00 0.00 40.17 3.01
5572 6659 5.134661 CCCCAACTTAAAACTGGTAAGTCA 58.865 41.667 0.00 0.00 40.17 3.41
5573 6660 5.009310 CCCCAACTTAAAACTGGTAAGTCAC 59.991 44.000 0.00 0.00 40.17 3.67
5583 6670 1.254026 GGTAAGTCACCCCCTTTTGC 58.746 55.000 0.00 0.00 42.07 3.68
5584 6671 0.879090 GTAAGTCACCCCCTTTTGCG 59.121 55.000 0.00 0.00 0.00 4.85
5585 6672 0.475044 TAAGTCACCCCCTTTTGCGT 59.525 50.000 0.00 0.00 0.00 5.24
5586 6673 1.106944 AAGTCACCCCCTTTTGCGTG 61.107 55.000 0.00 0.00 0.00 5.34
5587 6674 2.203422 TCACCCCCTTTTGCGTGG 60.203 61.111 0.00 0.00 0.00 4.94
5588 6675 3.302344 CACCCCCTTTTGCGTGGG 61.302 66.667 0.00 0.00 44.03 4.61
5589 6676 3.828023 ACCCCCTTTTGCGTGGGT 61.828 61.111 0.00 0.00 46.50 4.51
5590 6677 2.989253 CCCCCTTTTGCGTGGGTC 60.989 66.667 0.00 0.00 41.82 4.46
5591 6678 2.989253 CCCCTTTTGCGTGGGTCC 60.989 66.667 0.00 0.00 41.82 4.46
5592 6679 2.989253 CCCTTTTGCGTGGGTCCC 60.989 66.667 0.00 0.00 38.65 4.46
5593 6680 2.203422 CCTTTTGCGTGGGTCCCA 60.203 61.111 6.47 6.47 0.00 4.37
5602 6689 4.774319 TGGGTCCCACCACCTTTA 57.226 55.556 6.47 0.00 41.02 1.85
5603 6690 2.156920 TGGGTCCCACCACCTTTAC 58.843 57.895 6.47 0.00 41.02 2.01
5604 6691 0.698198 TGGGTCCCACCACCTTTACA 60.698 55.000 6.47 0.00 41.02 2.41
5605 6692 0.702316 GGGTCCCACCACCTTTACAT 59.298 55.000 1.78 0.00 41.02 2.29
5606 6693 1.917568 GGGTCCCACCACCTTTACATA 59.082 52.381 1.78 0.00 41.02 2.29
5607 6694 2.309458 GGGTCCCACCACCTTTACATAA 59.691 50.000 1.78 0.00 41.02 1.90
5608 6695 3.245336 GGGTCCCACCACCTTTACATAAA 60.245 47.826 1.78 0.00 41.02 1.40
5609 6696 4.409187 GGTCCCACCACCTTTACATAAAA 58.591 43.478 0.00 0.00 38.42 1.52
5610 6697 4.833938 GGTCCCACCACCTTTACATAAAAA 59.166 41.667 0.00 0.00 38.42 1.94
5628 6715 4.551702 AAAAAGCAAGGTGAAAAGGTGT 57.448 36.364 0.00 0.00 0.00 4.16
5629 6716 3.525268 AAAGCAAGGTGAAAAGGTGTG 57.475 42.857 0.00 0.00 0.00 3.82
5630 6717 1.402787 AGCAAGGTGAAAAGGTGTGG 58.597 50.000 0.00 0.00 0.00 4.17
5631 6718 1.111277 GCAAGGTGAAAAGGTGTGGT 58.889 50.000 0.00 0.00 0.00 4.16
5632 6719 1.480545 GCAAGGTGAAAAGGTGTGGTT 59.519 47.619 0.00 0.00 0.00 3.67
5633 6720 2.691011 GCAAGGTGAAAAGGTGTGGTTA 59.309 45.455 0.00 0.00 0.00 2.85
5634 6721 3.243401 GCAAGGTGAAAAGGTGTGGTTAG 60.243 47.826 0.00 0.00 0.00 2.34
5635 6722 3.223674 AGGTGAAAAGGTGTGGTTAGG 57.776 47.619 0.00 0.00 0.00 2.69
5636 6723 2.512476 AGGTGAAAAGGTGTGGTTAGGT 59.488 45.455 0.00 0.00 0.00 3.08
5637 6724 2.621526 GGTGAAAAGGTGTGGTTAGGTG 59.378 50.000 0.00 0.00 0.00 4.00
5638 6725 3.547746 GTGAAAAGGTGTGGTTAGGTGA 58.452 45.455 0.00 0.00 0.00 4.02
5639 6726 3.314357 GTGAAAAGGTGTGGTTAGGTGAC 59.686 47.826 0.00 0.00 0.00 3.67
5641 6728 3.945640 AAAGGTGTGGTTAGGTGACTT 57.054 42.857 0.00 0.00 43.67 3.01
5642 6729 5.104444 TGAAAAGGTGTGGTTAGGTGACTTA 60.104 40.000 0.00 0.00 43.67 2.24
5643 6730 5.578157 AAAGGTGTGGTTAGGTGACTTAT 57.422 39.130 0.00 0.00 43.67 1.73
5644 6731 6.691255 AAAGGTGTGGTTAGGTGACTTATA 57.309 37.500 0.00 0.00 43.67 0.98
5645 6732 6.691255 AAGGTGTGGTTAGGTGACTTATAA 57.309 37.500 0.00 0.00 43.67 0.98
5646 6733 6.295719 AGGTGTGGTTAGGTGACTTATAAG 57.704 41.667 11.05 11.05 43.67 1.73
5647 6734 5.783875 AGGTGTGGTTAGGTGACTTATAAGT 59.216 40.000 18.05 18.05 43.67 2.24
5666 6753 3.904136 GTCAGATGACAACCAAACAGG 57.096 47.619 8.09 0.00 44.18 4.00
5667 6754 2.030805 GTCAGATGACAACCAAACAGGC 60.031 50.000 8.09 0.00 44.18 4.85
5668 6755 1.069022 CAGATGACAACCAAACAGGCG 60.069 52.381 0.00 0.00 43.14 5.52
5669 6756 0.951558 GATGACAACCAAACAGGCGT 59.048 50.000 0.00 0.00 43.14 5.68
5670 6757 0.667993 ATGACAACCAAACAGGCGTG 59.332 50.000 4.53 4.53 43.14 5.34
5671 6758 0.393132 TGACAACCAAACAGGCGTGA 60.393 50.000 14.38 0.00 43.14 4.35
5672 6759 0.028902 GACAACCAAACAGGCGTGAC 59.971 55.000 14.38 0.00 43.14 3.67
5673 6760 0.393808 ACAACCAAACAGGCGTGACT 60.394 50.000 14.38 0.00 43.14 3.41
5674 6761 0.738389 CAACCAAACAGGCGTGACTT 59.262 50.000 14.38 3.10 43.14 3.01
5675 6762 1.944024 CAACCAAACAGGCGTGACTTA 59.056 47.619 14.38 0.00 43.14 2.24
5676 6763 2.552315 CAACCAAACAGGCGTGACTTAT 59.448 45.455 14.38 0.00 43.14 1.73
5677 6764 3.688694 ACCAAACAGGCGTGACTTATA 57.311 42.857 14.38 0.00 43.14 0.98
5678 6765 4.010667 ACCAAACAGGCGTGACTTATAA 57.989 40.909 14.38 0.00 43.14 0.98
5679 6766 4.000988 ACCAAACAGGCGTGACTTATAAG 58.999 43.478 14.38 11.05 43.14 1.73
5680 6767 4.000988 CCAAACAGGCGTGACTTATAAGT 58.999 43.478 18.05 18.05 43.16 2.24
5701 6788 7.549147 AAGTCACTGGTATTAAGTTACCTGA 57.451 36.000 15.33 6.27 41.33 3.86
5702 6789 6.932947 AGTCACTGGTATTAAGTTACCTGAC 58.067 40.000 15.33 14.76 42.32 3.51
5703 6790 6.724905 AGTCACTGGTATTAAGTTACCTGACT 59.275 38.462 16.88 16.88 44.63 3.41
5704 6791 7.234988 AGTCACTGGTATTAAGTTACCTGACTT 59.765 37.037 16.88 2.60 45.83 3.01
5705 6792 8.526147 GTCACTGGTATTAAGTTACCTGACTTA 58.474 37.037 15.33 0.00 40.66 2.24
5706 6793 9.263446 TCACTGGTATTAAGTTACCTGACTTAT 57.737 33.333 15.33 0.00 41.33 1.73
5707 6794 9.886132 CACTGGTATTAAGTTACCTGACTTATT 57.114 33.333 15.33 1.40 41.33 1.40
5717 6804 8.843885 AGTTACCTGACTTATTAGAACCAAAC 57.156 34.615 0.00 0.00 0.00 2.93
5718 6805 8.434392 AGTTACCTGACTTATTAGAACCAAACA 58.566 33.333 0.00 0.00 0.00 2.83
5719 6806 8.718734 GTTACCTGACTTATTAGAACCAAACAG 58.281 37.037 0.00 0.00 0.00 3.16
5720 6807 6.238648 ACCTGACTTATTAGAACCAAACAGG 58.761 40.000 0.00 0.00 44.25 4.00
5721 6808 5.123979 CCTGACTTATTAGAACCAAACAGGC 59.876 44.000 0.00 0.00 43.14 4.85
5722 6809 5.007682 TGACTTATTAGAACCAAACAGGCC 58.992 41.667 0.00 0.00 43.14 5.19
5723 6810 4.341487 ACTTATTAGAACCAAACAGGCCC 58.659 43.478 0.00 0.00 43.14 5.80
5724 6811 4.044191 ACTTATTAGAACCAAACAGGCCCT 59.956 41.667 0.00 0.00 43.14 5.19
5725 6812 5.252164 ACTTATTAGAACCAAACAGGCCCTA 59.748 40.000 0.00 0.00 43.14 3.53
5726 6813 4.668138 ATTAGAACCAAACAGGCCCTAA 57.332 40.909 0.00 0.00 43.14 2.69
5727 6814 2.586648 AGAACCAAACAGGCCCTAAG 57.413 50.000 0.00 0.00 43.14 2.18
5728 6815 0.888619 GAACCAAACAGGCCCTAAGC 59.111 55.000 0.00 0.00 43.14 3.09
5729 6816 0.187361 AACCAAACAGGCCCTAAGCA 59.813 50.000 0.00 0.00 46.50 3.91
5730 6817 0.251341 ACCAAACAGGCCCTAAGCAG 60.251 55.000 0.00 0.00 46.50 4.24
5731 6818 0.967380 CCAAACAGGCCCTAAGCAGG 60.967 60.000 0.00 0.00 46.50 4.85
5732 6819 0.038166 CAAACAGGCCCTAAGCAGGA 59.962 55.000 0.00 0.00 45.91 3.86
5733 6820 1.002857 AAACAGGCCCTAAGCAGGAT 58.997 50.000 0.00 0.00 45.91 3.24
5734 6821 0.257039 AACAGGCCCTAAGCAGGATG 59.743 55.000 0.00 0.00 45.91 3.51
5735 6822 0.621571 ACAGGCCCTAAGCAGGATGA 60.622 55.000 0.00 0.00 45.91 2.92
5736 6823 0.548031 CAGGCCCTAAGCAGGATGAA 59.452 55.000 0.00 0.00 45.91 2.57
5737 6824 0.842635 AGGCCCTAAGCAGGATGAAG 59.157 55.000 0.00 0.00 45.91 3.02
5738 6825 0.179006 GGCCCTAAGCAGGATGAAGG 60.179 60.000 0.00 0.00 45.91 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 3.495453 CCCTCCTCTCTAGTCGTTCTAGG 60.495 56.522 13.93 0.00 44.45 3.02
106 108 4.067913 CCCGGTTGCACCAATGGC 62.068 66.667 0.00 0.00 38.47 4.40
208 210 1.067212 GATCATAACCGACGAGCAGGT 59.933 52.381 0.00 0.00 43.68 4.00
222 224 1.385756 TTCGTCCCGTGCGGATCATA 61.386 55.000 12.71 0.00 44.66 2.15
244 246 1.646189 GTCCAATCACTCCTTCGAGC 58.354 55.000 0.00 0.00 40.03 5.03
253 255 1.821753 CAGACTCTCCGTCCAATCACT 59.178 52.381 0.00 0.00 43.91 3.41
255 257 1.546029 CACAGACTCTCCGTCCAATCA 59.454 52.381 0.00 0.00 43.91 2.57
267 269 2.600731 CTCGGATCACAACACAGACTC 58.399 52.381 0.00 0.00 0.00 3.36
283 285 1.330655 ATCTGTGTAGCCACCCTCGG 61.331 60.000 0.00 0.00 41.09 4.63
289 291 3.165058 TCGATCAATCTGTGTAGCCAC 57.835 47.619 0.00 0.00 42.19 5.01
296 298 6.420306 CCTCTTGTCTAATCGATCAATCTGTG 59.580 42.308 0.00 0.00 0.00 3.66
301 303 6.276847 GTCACCTCTTGTCTAATCGATCAAT 58.723 40.000 0.00 0.00 0.00 2.57
302 304 5.394224 GGTCACCTCTTGTCTAATCGATCAA 60.394 44.000 0.00 0.00 0.00 2.57
303 305 4.098044 GGTCACCTCTTGTCTAATCGATCA 59.902 45.833 0.00 0.00 0.00 2.92
306 308 2.758979 GGGTCACCTCTTGTCTAATCGA 59.241 50.000 0.00 0.00 0.00 3.59
316 318 1.636003 GGAGGAATTGGGTCACCTCTT 59.364 52.381 0.00 0.00 45.52 2.85
317 319 1.290134 GGAGGAATTGGGTCACCTCT 58.710 55.000 0.00 0.00 45.52 3.69
375 378 2.825836 GTTCATGCGAGCAGGGGG 60.826 66.667 9.88 0.00 0.00 5.40
376 379 1.377725 AAGTTCATGCGAGCAGGGG 60.378 57.895 9.88 0.00 0.00 4.79
425 428 3.125316 CGTTTCCGTTTAGTCAACCTCA 58.875 45.455 0.00 0.00 30.65 3.86
430 433 2.823984 TCAGCGTTTCCGTTTAGTCAA 58.176 42.857 0.00 0.00 36.15 3.18
438 441 1.338674 TGATTGGATCAGCGTTTCCGT 60.339 47.619 0.00 0.00 34.58 4.69
448 452 3.643320 ACTCGCTAGGAATGATTGGATCA 59.357 43.478 0.00 0.00 44.55 2.92
452 456 3.181471 ACAGACTCGCTAGGAATGATTGG 60.181 47.826 0.00 0.00 0.00 3.16
468 472 7.805071 CGAATCTTAAAGCATTTCAAACAGACT 59.195 33.333 0.00 0.00 40.09 3.24
474 478 6.446318 AGCACGAATCTTAAAGCATTTCAAA 58.554 32.000 0.00 0.00 40.09 2.69
477 481 8.335356 TGTATAGCACGAATCTTAAAGCATTTC 58.665 33.333 0.00 0.00 40.09 2.17
478 482 8.208718 TGTATAGCACGAATCTTAAAGCATTT 57.791 30.769 0.00 0.00 43.42 2.32
479 483 7.710907 TCTGTATAGCACGAATCTTAAAGCATT 59.289 33.333 0.00 0.00 0.00 3.56
524 530 4.882842 ACTTTGGTTTGTTTGGTTGTCT 57.117 36.364 0.00 0.00 0.00 3.41
525 531 4.377943 GCAACTTTGGTTTGTTTGGTTGTC 60.378 41.667 0.00 0.00 36.14 3.18
527 533 3.499918 TGCAACTTTGGTTTGTTTGGTTG 59.500 39.130 0.00 0.00 36.61 3.77
528 534 3.744660 TGCAACTTTGGTTTGTTTGGTT 58.255 36.364 0.00 0.00 32.73 3.67
529 535 3.409026 TGCAACTTTGGTTTGTTTGGT 57.591 38.095 0.00 0.00 32.73 3.67
551 557 3.307108 TCGGATCACACCCGTGCA 61.307 61.111 0.00 0.00 46.53 4.57
560 566 1.517257 CAGTGCGAGGTCGGATCAC 60.517 63.158 0.89 1.37 42.66 3.06
565 571 1.811266 CCATTCAGTGCGAGGTCGG 60.811 63.158 0.89 0.00 40.23 4.79
566 572 2.456119 GCCATTCAGTGCGAGGTCG 61.456 63.158 0.00 0.00 43.27 4.79
572 578 2.332362 GATGCCAGCCATTCAGTGCG 62.332 60.000 0.00 0.00 33.29 5.34
573 579 1.317431 TGATGCCAGCCATTCAGTGC 61.317 55.000 0.00 0.00 33.29 4.40
575 581 0.622136 TCTGATGCCAGCCATTCAGT 59.378 50.000 11.64 0.00 40.20 3.41
576 582 1.880675 GATCTGATGCCAGCCATTCAG 59.119 52.381 0.00 7.60 40.20 3.02
577 583 1.478105 GGATCTGATGCCAGCCATTCA 60.478 52.381 0.00 0.00 40.20 2.57
606 630 2.126502 CGGGGTGTTGCGATTTGC 60.127 61.111 0.00 0.00 46.70 3.68
776 805 2.093181 GGAAAGAAGGAAGGAGAGGAGC 60.093 54.545 0.00 0.00 0.00 4.70
777 806 3.197549 CAGGAAAGAAGGAAGGAGAGGAG 59.802 52.174 0.00 0.00 0.00 3.69
778 807 3.177228 CAGGAAAGAAGGAAGGAGAGGA 58.823 50.000 0.00 0.00 0.00 3.71
779 808 2.238395 CCAGGAAAGAAGGAAGGAGAGG 59.762 54.545 0.00 0.00 0.00 3.69
780 809 3.177228 TCCAGGAAAGAAGGAAGGAGAG 58.823 50.000 0.00 0.00 0.00 3.20
781 810 3.177228 CTCCAGGAAAGAAGGAAGGAGA 58.823 50.000 0.00 0.00 42.87 3.71
868 904 3.123620 CTGCTGGGCTTCTCGTGC 61.124 66.667 0.00 0.00 0.00 5.34
969 1030 2.959372 GCAAACTGGCCCGGTTAC 59.041 61.111 8.72 0.15 32.14 2.50
1243 1318 1.458588 GGAGGAAGCGGAGGAGGAT 60.459 63.158 0.00 0.00 0.00 3.24
1285 1360 2.278857 CTCGAGATCCGCGGTTGG 60.279 66.667 27.15 13.34 38.37 3.77
1286 1361 2.278857 CCTCGAGATCCGCGGTTG 60.279 66.667 27.15 10.34 38.29 3.77
1405 1498 2.413796 CGACCGACGGAATCATGAAAAA 59.586 45.455 23.38 0.00 38.46 1.94
1471 1582 0.805711 CGCAGACACAGTGACACACA 60.806 55.000 7.81 0.00 36.74 3.72
1478 1589 1.153597 TCAAGTGCGCAGACACAGTG 61.154 55.000 12.22 0.00 43.23 3.66
1479 1590 0.877649 CTCAAGTGCGCAGACACAGT 60.878 55.000 12.22 0.00 43.23 3.55
1484 1595 2.375766 CCGTCTCAAGTGCGCAGAC 61.376 63.158 12.22 13.87 34.36 3.51
1485 1596 2.049156 CCGTCTCAAGTGCGCAGA 60.049 61.111 12.22 3.44 0.00 4.26
1486 1597 2.049156 TCCGTCTCAAGTGCGCAG 60.049 61.111 12.22 0.00 0.00 5.18
1487 1598 2.355837 GTCCGTCTCAAGTGCGCA 60.356 61.111 5.66 5.66 0.00 6.09
1488 1599 3.112709 GGTCCGTCTCAAGTGCGC 61.113 66.667 0.00 0.00 0.00 6.09
1489 1600 2.432628 GGGTCCGTCTCAAGTGCG 60.433 66.667 0.00 0.00 0.00 5.34
1495 1606 1.596934 GCAATCTGGGTCCGTCTCA 59.403 57.895 0.00 0.00 0.00 3.27
1546 1657 2.021068 ATCATGGCGGAGTCGAGTGG 62.021 60.000 0.00 0.00 39.00 4.00
1586 1697 0.542938 CCTCGGATGCATCCCTCCTA 60.543 60.000 34.76 16.96 44.24 2.94
1670 1781 1.083489 TCAGAGCCGCCGTAAAAATG 58.917 50.000 0.00 0.00 0.00 2.32
1678 1789 0.103208 AGATACTTTCAGAGCCGCCG 59.897 55.000 0.00 0.00 0.00 6.46
1681 1792 6.978659 TGTATGTTAAGATACTTTCAGAGCCG 59.021 38.462 19.98 0.00 31.15 5.52
1698 1810 7.701539 ATTTGCTCCTTTGATGTGTATGTTA 57.298 32.000 0.00 0.00 0.00 2.41
1720 1860 1.131126 CTGACGCTGCGGATCAAAATT 59.869 47.619 26.95 0.70 0.00 1.82
1730 1870 1.875813 GATCTGGTCTGACGCTGCG 60.876 63.158 21.91 21.91 0.00 5.18
1737 1877 2.836372 ACATCAGCAAGATCTGGTCTGA 59.164 45.455 19.92 19.92 37.23 3.27
1740 1880 2.286872 CCACATCAGCAAGATCTGGTC 58.713 52.381 0.00 0.00 37.84 4.02
1867 2016 4.058817 GACACATCCCGACCAAGATAATC 58.941 47.826 0.00 0.00 0.00 1.75
1895 2044 0.036875 ACTTGTGGGGTTGAGCTAGC 59.963 55.000 6.62 6.62 0.00 3.42
1930 2082 2.223377 CGACCGGGCTAATTAAATGAGC 59.777 50.000 5.33 0.00 35.39 4.26
2025 2177 3.854666 CAGCTGATGATAGGGGTAATCG 58.145 50.000 8.42 0.00 0.00 3.34
2031 2183 0.605860 GCAGCAGCTGATGATAGGGG 60.606 60.000 34.79 7.54 37.91 4.79
2152 2304 5.178623 CGTACTACATCAGAGAGATCCACTC 59.821 48.000 8.83 8.83 45.22 3.51
2153 2305 5.060506 CGTACTACATCAGAGAGATCCACT 58.939 45.833 0.00 0.00 33.72 4.00
2162 2314 9.737427 AGAAATGAATTACGTACTACATCAGAG 57.263 33.333 0.00 0.00 0.00 3.35
2171 2323 9.751542 CAGAAGGATAGAAATGAATTACGTACT 57.248 33.333 0.00 0.00 0.00 2.73
2205 2357 3.243401 GCCAACTGAACTTAACCACAAGG 60.243 47.826 0.00 0.00 42.21 3.61
2280 2432 5.021458 CCCCTTGTCTTCTACCACTACTAA 58.979 45.833 0.00 0.00 0.00 2.24
2281 2433 4.571362 CCCCCTTGTCTTCTACCACTACTA 60.571 50.000 0.00 0.00 0.00 1.82
2282 2434 3.442076 CCCCTTGTCTTCTACCACTACT 58.558 50.000 0.00 0.00 0.00 2.57
2337 2492 1.452108 GTCTGCCAAATCCCCCTCG 60.452 63.158 0.00 0.00 0.00 4.63
2408 2563 5.519566 TCAACATTGCAAACAAGAATGTGAC 59.480 36.000 1.71 0.00 39.64 3.67
2420 2575 5.618236 TGGATGGAAAATCAACATTGCAAA 58.382 33.333 1.71 0.00 30.56 3.68
2428 2583 5.528870 ACGAGTTTTGGATGGAAAATCAAC 58.471 37.500 0.00 0.00 32.37 3.18
2432 2587 4.321230 GCTGACGAGTTTTGGATGGAAAAT 60.321 41.667 0.00 0.00 0.00 1.82
2435 2590 2.151202 GCTGACGAGTTTTGGATGGAA 58.849 47.619 0.00 0.00 0.00 3.53
2451 2606 3.957586 CCTGCAGGGTGTGGCTGA 61.958 66.667 26.14 0.00 0.00 4.26
2460 2615 2.593978 CATCTGGGACCTGCAGGG 59.406 66.667 35.42 18.05 40.27 4.45
2478 2633 1.408702 AGCAAACAATGGTGACCACAC 59.591 47.619 6.40 0.00 45.27 3.82
2568 2724 4.111577 TCTCTTAACTTCCATGATGGGGT 58.888 43.478 12.26 8.30 38.32 4.95
2592 2748 9.305555 CCATTCCCATGTCTAATTAATTGATCT 57.694 33.333 11.05 0.00 0.00 2.75
2593 2749 8.526147 CCCATTCCCATGTCTAATTAATTGATC 58.474 37.037 11.05 1.93 0.00 2.92
2598 2754 6.335311 TCCTCCCATTCCCATGTCTAATTAAT 59.665 38.462 0.00 0.00 0.00 1.40
2614 2770 0.693049 ACTTCAACGCTCCTCCCATT 59.307 50.000 0.00 0.00 0.00 3.16
2615 2771 1.207329 GTACTTCAACGCTCCTCCCAT 59.793 52.381 0.00 0.00 0.00 4.00
2616 2772 0.606604 GTACTTCAACGCTCCTCCCA 59.393 55.000 0.00 0.00 0.00 4.37
2617 2773 0.606604 TGTACTTCAACGCTCCTCCC 59.393 55.000 0.00 0.00 0.00 4.30
2618 2774 2.450609 TTGTACTTCAACGCTCCTCC 57.549 50.000 0.00 0.00 0.00 4.30
2619 2775 2.157863 GCTTTGTACTTCAACGCTCCTC 59.842 50.000 0.00 0.00 44.41 3.71
2636 2792 6.209192 TCAGACAATGACACCATTTATGCTTT 59.791 34.615 0.00 0.00 40.81 3.51
2640 2796 6.990341 TCTCAGACAATGACACCATTTATG 57.010 37.500 0.00 0.00 40.81 1.90
2653 2809 5.998363 GGGTTAAGTCAAGTTCTCAGACAAT 59.002 40.000 0.00 0.00 34.80 2.71
2660 2816 8.850007 AATTCTAAGGGTTAAGTCAAGTTCTC 57.150 34.615 0.00 0.00 0.00 2.87
2671 2827 8.107095 AGTGTAGCATCAAATTCTAAGGGTTAA 58.893 33.333 0.00 0.00 0.00 2.01
2673 2829 6.485171 AGTGTAGCATCAAATTCTAAGGGTT 58.515 36.000 0.00 0.00 0.00 4.11
2674 2830 6.067217 AGTGTAGCATCAAATTCTAAGGGT 57.933 37.500 0.00 0.00 0.00 4.34
2675 2831 6.599244 TGAAGTGTAGCATCAAATTCTAAGGG 59.401 38.462 0.00 0.00 0.00 3.95
2676 2832 7.119699 TGTGAAGTGTAGCATCAAATTCTAAGG 59.880 37.037 0.00 0.00 0.00 2.69
2677 2833 7.959651 GTGTGAAGTGTAGCATCAAATTCTAAG 59.040 37.037 0.00 0.00 0.00 2.18
2678 2834 7.443879 TGTGTGAAGTGTAGCATCAAATTCTAA 59.556 33.333 0.00 0.00 0.00 2.10
2679 2835 6.934083 TGTGTGAAGTGTAGCATCAAATTCTA 59.066 34.615 0.00 0.00 0.00 2.10
2680 2836 5.764686 TGTGTGAAGTGTAGCATCAAATTCT 59.235 36.000 0.00 0.00 0.00 2.40
2681 2837 6.000891 TGTGTGAAGTGTAGCATCAAATTC 57.999 37.500 0.00 0.00 0.00 2.17
2682 2838 6.389830 TTGTGTGAAGTGTAGCATCAAATT 57.610 33.333 0.00 0.00 0.00 1.82
2683 2839 6.389830 TTTGTGTGAAGTGTAGCATCAAAT 57.610 33.333 0.00 0.00 0.00 2.32
2694 2850 6.811170 ACAACCACTTATTTTTGTGTGAAGTG 59.189 34.615 6.17 6.17 44.21 3.16
2731 2888 0.459899 CTCATGGTACGGTGCAGCTA 59.540 55.000 14.92 2.76 0.00 3.32
2732 2889 1.219124 CTCATGGTACGGTGCAGCT 59.781 57.895 14.92 3.76 0.00 4.24
2735 2892 1.079197 CAGCTCATGGTACGGTGCA 60.079 57.895 0.00 0.00 0.00 4.57
2737 2894 1.464608 CAAACAGCTCATGGTACGGTG 59.535 52.381 0.00 0.00 0.00 4.94
2738 2895 1.808411 CAAACAGCTCATGGTACGGT 58.192 50.000 0.00 0.00 0.00 4.83
2739 2896 0.447801 GCAAACAGCTCATGGTACGG 59.552 55.000 0.00 0.00 41.15 4.02
2741 2898 2.907910 CTGCAAACAGCTCATGGTAC 57.092 50.000 0.00 0.00 45.94 3.34
2770 2929 3.353836 CCACCGAGGCAAACCGTG 61.354 66.667 0.00 0.00 42.76 4.94
2771 2930 3.868985 ACCACCGAGGCAAACCGT 61.869 61.111 0.00 0.00 43.14 4.83
2777 2936 3.635191 TCATGCACCACCGAGGCA 61.635 61.111 0.00 0.00 43.14 4.75
2778 2937 2.238847 TAGTCATGCACCACCGAGGC 62.239 60.000 0.00 0.00 43.14 4.70
2779 2938 0.249120 TTAGTCATGCACCACCGAGG 59.751 55.000 0.00 0.00 45.67 4.63
2781 2940 0.391130 GCTTAGTCATGCACCACCGA 60.391 55.000 0.00 0.00 0.00 4.69
2783 2942 1.373570 GAGCTTAGTCATGCACCACC 58.626 55.000 0.00 0.00 0.00 4.61
2784 2943 1.065854 AGGAGCTTAGTCATGCACCAC 60.066 52.381 0.00 0.00 41.32 4.16
2787 2946 2.349886 CGAAAGGAGCTTAGTCATGCAC 59.650 50.000 0.00 0.00 0.00 4.57
2795 2954 1.646189 GGAGCACGAAAGGAGCTTAG 58.354 55.000 0.00 0.00 44.69 2.18
2798 2957 2.665603 GGGAGCACGAAAGGAGCT 59.334 61.111 0.00 0.00 46.77 4.09
2822 2983 1.964373 GGTTATGCGGGGTATGCCG 60.964 63.158 0.00 0.00 34.97 5.69
2823 2984 0.179001 AAGGTTATGCGGGGTATGCC 60.179 55.000 0.00 0.00 0.00 4.40
2838 3001 1.302511 CAGGCGGCACAACTAAGGT 60.303 57.895 13.08 0.00 0.00 3.50
2861 3024 3.055891 TCCATCAATCTCTCAGCGAACAA 60.056 43.478 0.00 0.00 0.00 2.83
2867 3030 1.873069 CGCCTCCATCAATCTCTCAGC 60.873 57.143 0.00 0.00 0.00 4.26
2869 3032 1.489481 ACGCCTCCATCAATCTCTCA 58.511 50.000 0.00 0.00 0.00 3.27
2872 3035 2.548920 CCCTAACGCCTCCATCAATCTC 60.549 54.545 0.00 0.00 0.00 2.75
2880 3043 2.609610 AAGCCCCTAACGCCTCCA 60.610 61.111 0.00 0.00 0.00 3.86
2886 3049 3.536956 TGATTACAGAAGCCCCTAACG 57.463 47.619 0.00 0.00 0.00 3.18
2890 3053 2.507471 CCTCTTGATTACAGAAGCCCCT 59.493 50.000 0.00 0.00 0.00 4.79
2891 3054 2.505819 TCCTCTTGATTACAGAAGCCCC 59.494 50.000 0.00 0.00 0.00 5.80
2892 3055 3.914426 TCCTCTTGATTACAGAAGCCC 57.086 47.619 0.00 0.00 0.00 5.19
2899 3062 5.762179 AACCACTCATCCTCTTGATTACA 57.238 39.130 0.00 0.00 0.00 2.41
2903 3066 4.583871 GTCAAACCACTCATCCTCTTGAT 58.416 43.478 0.00 0.00 0.00 2.57
2907 3070 1.971357 ACGTCAAACCACTCATCCTCT 59.029 47.619 0.00 0.00 0.00 3.69
2909 3072 1.878102 GCACGTCAAACCACTCATCCT 60.878 52.381 0.00 0.00 0.00 3.24
2913 3076 1.436195 GCTGCACGTCAAACCACTCA 61.436 55.000 0.00 0.00 0.00 3.41
2928 3091 2.713011 CTCATTCATTTAGCACGCTGC 58.287 47.619 0.72 2.28 45.46 5.25
2929 3092 2.713011 GCTCATTCATTTAGCACGCTG 58.287 47.619 0.72 0.00 36.26 5.18
2930 3093 1.328680 CGCTCATTCATTTAGCACGCT 59.671 47.619 0.00 0.00 35.98 5.07
2931 3094 1.595489 CCGCTCATTCATTTAGCACGC 60.595 52.381 0.00 0.00 35.98 5.34
2932 3095 1.003545 CCCGCTCATTCATTTAGCACG 60.004 52.381 0.00 0.00 35.98 5.34
2933 3096 1.268743 GCCCGCTCATTCATTTAGCAC 60.269 52.381 0.00 0.00 35.98 4.40
2935 3098 0.040958 CGCCCGCTCATTCATTTAGC 60.041 55.000 0.00 0.00 0.00 3.09
2936 3099 1.581934 TCGCCCGCTCATTCATTTAG 58.418 50.000 0.00 0.00 0.00 1.85
2938 3101 0.947244 GATCGCCCGCTCATTCATTT 59.053 50.000 0.00 0.00 0.00 2.32
2939 3102 0.179048 TGATCGCCCGCTCATTCATT 60.179 50.000 0.00 0.00 0.00 2.57
2940 3103 0.602106 CTGATCGCCCGCTCATTCAT 60.602 55.000 0.00 0.00 0.00 2.57
2941 3104 1.227350 CTGATCGCCCGCTCATTCA 60.227 57.895 0.00 0.00 0.00 2.57
2942 3105 0.811616 AACTGATCGCCCGCTCATTC 60.812 55.000 0.00 0.00 0.00 2.67
2943 3106 0.464036 TAACTGATCGCCCGCTCATT 59.536 50.000 0.00 0.00 0.00 2.57
2944 3107 0.032678 CTAACTGATCGCCCGCTCAT 59.967 55.000 0.00 0.00 0.00 2.90
2945 3108 1.320344 ACTAACTGATCGCCCGCTCA 61.320 55.000 0.00 0.00 0.00 4.26
2946 3109 0.872021 CACTAACTGATCGCCCGCTC 60.872 60.000 0.00 0.00 0.00 5.03
2947 3110 1.141881 CACTAACTGATCGCCCGCT 59.858 57.895 0.00 0.00 0.00 5.52
2948 3111 0.739813 AACACTAACTGATCGCCCGC 60.740 55.000 0.00 0.00 0.00 6.13
2949 3112 0.999406 CAACACTAACTGATCGCCCG 59.001 55.000 0.00 0.00 0.00 6.13
2954 3117 8.547967 TCCTTAATTCACAACACTAACTGATC 57.452 34.615 0.00 0.00 0.00 2.92
3007 3176 6.978659 CAGATCGGCAAGATACTTTGTACTTA 59.021 38.462 0.00 0.00 40.26 2.24
3010 3179 5.109903 ACAGATCGGCAAGATACTTTGTAC 58.890 41.667 0.00 0.00 40.26 2.90
3021 3190 4.148348 GCGTTTATACTACAGATCGGCAAG 59.852 45.833 0.00 0.00 0.00 4.01
3023 3192 3.551454 GGCGTTTATACTACAGATCGGCA 60.551 47.826 0.00 0.00 41.01 5.69
3027 3196 9.339492 GTACATTAGGCGTTTATACTACAGATC 57.661 37.037 0.00 0.00 0.00 2.75
3029 3202 7.503566 AGGTACATTAGGCGTTTATACTACAGA 59.496 37.037 0.00 0.00 0.00 3.41
3040 3213 8.143835 ACGTATTTATTAGGTACATTAGGCGTT 58.856 33.333 0.00 0.00 0.00 4.84
3060 3233 6.827586 ATGTTCACAAAATACCCACGTATT 57.172 33.333 0.00 0.00 45.25 1.89
3061 3234 7.925043 TTATGTTCACAAAATACCCACGTAT 57.075 32.000 0.00 0.00 36.72 3.06
3062 3235 7.741027 TTTATGTTCACAAAATACCCACGTA 57.259 32.000 0.00 0.00 0.00 3.57
3063 3236 6.636562 TTTATGTTCACAAAATACCCACGT 57.363 33.333 0.00 0.00 0.00 4.49
3064 3237 9.627395 TTATTTTATGTTCACAAAATACCCACG 57.373 29.630 8.04 0.00 36.70 4.94
3104 3347 4.216257 CACAAAAGGTCATGGAAGTACAGG 59.784 45.833 0.00 0.00 0.00 4.00
3188 3439 4.940046 AGTTCCTCATGAATAGCACACAAG 59.060 41.667 0.00 0.00 34.90 3.16
3189 3440 4.910195 AGTTCCTCATGAATAGCACACAA 58.090 39.130 0.00 0.00 34.90 3.33
3190 3441 4.223700 AGAGTTCCTCATGAATAGCACACA 59.776 41.667 0.00 0.00 34.90 3.72
3191 3442 4.764172 AGAGTTCCTCATGAATAGCACAC 58.236 43.478 0.00 0.00 34.90 3.82
3192 3443 5.046376 TGAAGAGTTCCTCATGAATAGCACA 60.046 40.000 0.00 0.00 34.90 4.57
3193 3444 5.423015 TGAAGAGTTCCTCATGAATAGCAC 58.577 41.667 0.00 0.00 34.90 4.40
3194 3445 5.682234 TGAAGAGTTCCTCATGAATAGCA 57.318 39.130 0.00 0.00 34.90 3.49
3195 3446 5.049543 GCATGAAGAGTTCCTCATGAATAGC 60.050 44.000 19.79 5.08 41.58 2.97
3196 3447 6.053650 TGCATGAAGAGTTCCTCATGAATAG 58.946 40.000 19.79 0.00 41.58 1.73
3206 3529 9.331282 ACTTATAAAGTATGCATGAAGAGTTCC 57.669 33.333 10.16 0.00 40.69 3.62
3268 3627 2.343758 GGCGCTCAGTCAACCTCA 59.656 61.111 7.64 0.00 0.00 3.86
3277 3636 1.225855 TATATTTTGGCGGCGCTCAG 58.774 50.000 32.30 0.00 0.00 3.35
3325 3688 4.152223 CGGAAAGGTGATTTGGCAAATTTC 59.848 41.667 25.02 22.10 0.00 2.17
3330 3693 0.316841 GCGGAAAGGTGATTTGGCAA 59.683 50.000 0.00 0.00 30.80 4.52
3366 3732 7.013655 GGTCTGCAACAGGTGATATATCATTTT 59.986 37.037 18.18 6.91 39.30 1.82
3370 3736 4.202357 GGGTCTGCAACAGGTGATATATCA 60.202 45.833 11.49 11.49 31.51 2.15
3386 3752 1.482593 ACACAGCTATACAGGGTCTGC 59.517 52.381 0.00 0.00 34.37 4.26
3388 3754 3.380637 CGTTACACAGCTATACAGGGTCT 59.619 47.826 0.00 0.00 0.00 3.85
3402 3768 3.940221 ACTTTTACTTGGCACGTTACACA 59.060 39.130 0.67 0.00 0.00 3.72
3420 3786 7.394016 TGAATCTGTATGTATGTGGTGACTTT 58.606 34.615 0.00 0.00 0.00 2.66
3437 3803 8.523915 TTCAATACTGCCAATATTGAATCTGT 57.476 30.769 15.24 15.29 46.58 3.41
3487 3853 9.081997 TGTTCTTGACAAACACATTATGAAAAC 57.918 29.630 0.00 0.00 34.69 2.43
3536 3910 1.081892 CCTTCCTCGCAGACAATGTG 58.918 55.000 0.00 0.00 41.00 3.21
3537 3911 0.687354 ACCTTCCTCGCAGACAATGT 59.313 50.000 0.00 0.00 0.00 2.71
3591 3966 5.422145 ACGATCATGAATGACTTGTCATCA 58.578 37.500 15.48 14.46 40.03 3.07
3600 3975 7.307042 CCAGATTCAGTAACGATCATGAATGAC 60.307 40.741 0.00 0.00 41.27 3.06
3612 3987 4.115516 CTGATGGTCCAGATTCAGTAACG 58.884 47.826 11.44 0.00 36.29 3.18
3667 4042 0.535797 GCCCCTACTACGCAAGAACT 59.464 55.000 0.00 0.00 43.62 3.01
3669 4044 0.822164 GAGCCCCTACTACGCAAGAA 59.178 55.000 0.00 0.00 43.62 2.52
3748 4129 1.271934 CTCGAGCAGATCCCACTATGG 59.728 57.143 0.00 0.00 37.25 2.74
3767 4191 1.352352 CACTTGGTTCCAGGGTCATCT 59.648 52.381 5.97 0.00 0.00 2.90
3832 4257 1.920325 CTCCAGTCTTCTGCCCCCA 60.920 63.158 0.00 0.00 40.09 4.96
3838 4263 5.651387 TGACATACTTCTCCAGTCTTCTG 57.349 43.478 0.00 0.00 41.01 3.02
4089 4575 9.971922 AACAAAACAAAAACATTTGAATTTCCA 57.028 22.222 8.18 0.00 37.46 3.53
4153 4649 4.831107 TCATATGCACAGTACAAGAGCAA 58.169 39.130 12.71 5.37 36.24 3.91
4226 5040 2.704572 AGTCTGTTCTAGCATGTTGCC 58.295 47.619 0.00 0.00 46.52 4.52
4231 5045 4.199432 ACCAGAAGTCTGTTCTAGCATG 57.801 45.455 7.51 0.00 42.27 4.06
4240 5054 2.530701 CCAGGTCTACCAGAAGTCTGT 58.469 52.381 7.51 0.00 42.27 3.41
4303 5117 5.649782 ATATTCAGGCAAACAAGTTCCAG 57.350 39.130 0.00 0.00 0.00 3.86
4325 5139 8.806429 ATGATAAATCACCTGTTGTATGTCAA 57.194 30.769 0.00 0.00 40.03 3.18
4373 5193 0.802494 ACAACGCGAATAAGCCCAAG 59.198 50.000 15.93 0.00 0.00 3.61
4478 5510 1.303888 ATGCCTTGGTGCAGTCAGG 60.304 57.895 0.00 0.00 45.93 3.86
4488 5520 2.646930 TGCTAACATGAGATGCCTTGG 58.353 47.619 0.00 0.00 0.00 3.61
4525 5565 6.521162 ACAATGTGTATGTACTGAACTCACA 58.479 36.000 0.00 0.00 38.31 3.58
4556 5596 7.959733 TGCAAAGTCACATATAAACGAAGTAG 58.040 34.615 0.00 0.00 45.00 2.57
4574 5614 0.036164 TACACGGGCATCTGCAAAGT 59.964 50.000 4.33 0.00 44.36 2.66
4714 5754 1.314534 TATTCGACGAGGAACCGGCA 61.315 55.000 0.00 0.00 37.43 5.69
4733 5773 0.597637 GCGGTCATATGCTAGCACGT 60.598 55.000 22.07 7.96 0.00 4.49
4772 5812 2.861271 CTTCCCTTGGATGGTGGGGC 62.861 65.000 0.00 0.00 41.22 5.80
4777 5817 0.846427 TGCTCCTTCCCTTGGATGGT 60.846 55.000 13.10 0.00 44.44 3.55
4793 5833 3.443045 CGCCGCCATTCCTTTGCT 61.443 61.111 0.00 0.00 0.00 3.91
4795 5835 2.485122 GTCGCCGCCATTCCTTTG 59.515 61.111 0.00 0.00 0.00 2.77
4836 5884 0.397941 TGGCCACAGAAGAGAACAGG 59.602 55.000 0.00 0.00 0.00 4.00
4990 6039 3.429822 GCAACAATTCCATGGATCCACTG 60.430 47.826 18.99 15.83 0.00 3.66
5020 6069 0.173708 ACACTAGTAGCCGAGCAAGC 59.826 55.000 0.00 0.00 0.00 4.01
5050 6134 3.314553 ACTCTATGACAAACGACAACGG 58.685 45.455 0.00 0.00 44.46 4.44
5061 6145 4.941873 ACACACATCTACGACTCTATGACA 59.058 41.667 0.00 0.00 0.00 3.58
5106 6193 5.169561 GTCATTTATGCAGCGAAATTACACG 59.830 40.000 10.13 0.00 0.00 4.49
5228 6315 3.714798 AGTTCTAGACACACCCTTTCCAA 59.285 43.478 0.00 0.00 0.00 3.53
5252 6339 2.284855 CGCTCGTAGCAAAATAACGACC 60.285 50.000 7.47 0.00 42.58 4.79
5253 6340 2.284855 CCGCTCGTAGCAAAATAACGAC 60.285 50.000 7.47 0.00 42.58 4.34
5314 6401 5.295431 TGTAGCATTTGTTGTCATACTGC 57.705 39.130 0.00 0.00 0.00 4.40
5383 6470 3.924073 CACAACTTTCGTGATATCACCGA 59.076 43.478 26.33 22.57 43.66 4.69
5390 6477 4.021807 TGACTAGCCACAACTTTCGTGATA 60.022 41.667 0.00 0.00 36.43 2.15
5397 6484 6.463995 TGAAAAATGACTAGCCACAACTTT 57.536 33.333 0.00 0.00 0.00 2.66
5398 6485 6.655078 ATGAAAAATGACTAGCCACAACTT 57.345 33.333 0.00 0.00 0.00 2.66
5399 6486 6.655078 AATGAAAAATGACTAGCCACAACT 57.345 33.333 0.00 0.00 0.00 3.16
5400 6487 7.713764 AAAATGAAAAATGACTAGCCACAAC 57.286 32.000 0.00 0.00 0.00 3.32
5401 6488 7.984050 TGAAAAATGAAAAATGACTAGCCACAA 59.016 29.630 0.00 0.00 0.00 3.33
5402 6489 7.437862 GTGAAAAATGAAAAATGACTAGCCACA 59.562 33.333 0.00 0.00 0.00 4.17
5403 6490 7.653311 AGTGAAAAATGAAAAATGACTAGCCAC 59.347 33.333 0.00 0.00 0.00 5.01
5404 6491 7.725251 AGTGAAAAATGAAAAATGACTAGCCA 58.275 30.769 0.00 0.00 0.00 4.75
5405 6492 9.346725 CTAGTGAAAAATGAAAAATGACTAGCC 57.653 33.333 0.00 0.00 0.00 3.93
5406 6493 9.899226 ACTAGTGAAAAATGAAAAATGACTAGC 57.101 29.630 0.00 0.00 35.73 3.42
5422 6509 9.181061 GGCCCTTATTTTATACACTAGTGAAAA 57.819 33.333 29.30 22.69 32.20 2.29
5423 6510 8.554011 AGGCCCTTATTTTATACACTAGTGAAA 58.446 33.333 29.30 18.16 0.00 2.69
5424 6511 7.990886 CAGGCCCTTATTTTATACACTAGTGAA 59.009 37.037 29.30 12.80 0.00 3.18
5425 6512 7.126726 ACAGGCCCTTATTTTATACACTAGTGA 59.873 37.037 29.30 13.09 0.00 3.41
5426 6513 7.280356 ACAGGCCCTTATTTTATACACTAGTG 58.720 38.462 21.44 21.44 0.00 2.74
5427 6514 7.447510 ACAGGCCCTTATTTTATACACTAGT 57.552 36.000 0.00 0.00 0.00 2.57
5428 6515 8.621286 CAAACAGGCCCTTATTTTATACACTAG 58.379 37.037 0.00 0.00 0.00 2.57
5429 6516 7.558444 CCAAACAGGCCCTTATTTTATACACTA 59.442 37.037 0.00 0.00 0.00 2.74
5430 6517 6.379988 CCAAACAGGCCCTTATTTTATACACT 59.620 38.462 0.00 0.00 0.00 3.55
5431 6518 6.153851 ACCAAACAGGCCCTTATTTTATACAC 59.846 38.462 0.00 0.00 43.14 2.90
5432 6519 6.257586 ACCAAACAGGCCCTTATTTTATACA 58.742 36.000 0.00 0.00 43.14 2.29
5433 6520 6.785337 ACCAAACAGGCCCTTATTTTATAC 57.215 37.500 0.00 0.00 43.14 1.47
5434 6521 7.455008 TGAAACCAAACAGGCCCTTATTTTATA 59.545 33.333 0.00 0.00 43.14 0.98
5435 6522 6.271159 TGAAACCAAACAGGCCCTTATTTTAT 59.729 34.615 0.00 0.00 43.14 1.40
5436 6523 5.602978 TGAAACCAAACAGGCCCTTATTTTA 59.397 36.000 0.00 0.00 43.14 1.52
5437 6524 4.410555 TGAAACCAAACAGGCCCTTATTTT 59.589 37.500 0.00 0.00 43.14 1.82
5438 6525 3.970640 TGAAACCAAACAGGCCCTTATTT 59.029 39.130 0.00 0.00 43.14 1.40
5439 6526 3.582164 TGAAACCAAACAGGCCCTTATT 58.418 40.909 0.00 0.00 43.14 1.40
5440 6527 3.252554 TGAAACCAAACAGGCCCTTAT 57.747 42.857 0.00 0.00 43.14 1.73
5441 6528 2.757894 TGAAACCAAACAGGCCCTTA 57.242 45.000 0.00 0.00 43.14 2.69
5442 6529 1.872773 TTGAAACCAAACAGGCCCTT 58.127 45.000 0.00 0.00 43.14 3.95
5443 6530 1.872773 TTTGAAACCAAACAGGCCCT 58.127 45.000 0.00 0.00 43.14 5.19
5444 6531 2.928801 ATTTGAAACCAAACAGGCCC 57.071 45.000 0.00 0.00 43.14 5.80
5445 6532 4.956085 ACTTATTTGAAACCAAACAGGCC 58.044 39.130 0.00 0.00 43.14 5.19
5446 6533 7.870445 TGATAACTTATTTGAAACCAAACAGGC 59.130 33.333 0.00 0.00 43.14 4.85
5447 6534 9.757227 TTGATAACTTATTTGAAACCAAACAGG 57.243 29.630 0.00 0.00 45.67 4.00
5527 6614 6.354130 GGGTGGAGCAACTTATGACTTATAA 58.646 40.000 0.00 0.00 0.00 0.98
5528 6615 5.163237 GGGGTGGAGCAACTTATGACTTATA 60.163 44.000 0.00 0.00 0.00 0.98
5529 6616 4.385310 GGGGTGGAGCAACTTATGACTTAT 60.385 45.833 0.00 0.00 0.00 1.73
5530 6617 3.054655 GGGGTGGAGCAACTTATGACTTA 60.055 47.826 0.00 0.00 0.00 2.24
5531 6618 2.290960 GGGGTGGAGCAACTTATGACTT 60.291 50.000 0.00 0.00 0.00 3.01
5532 6619 1.282157 GGGGTGGAGCAACTTATGACT 59.718 52.381 0.00 0.00 0.00 3.41
5533 6620 1.004277 TGGGGTGGAGCAACTTATGAC 59.996 52.381 0.00 0.00 0.00 3.06
5534 6621 1.367346 TGGGGTGGAGCAACTTATGA 58.633 50.000 0.00 0.00 0.00 2.15
5535 6622 1.818674 GTTGGGGTGGAGCAACTTATG 59.181 52.381 0.00 0.00 0.00 1.90
5536 6623 1.710809 AGTTGGGGTGGAGCAACTTAT 59.289 47.619 0.00 0.00 34.63 1.73
5537 6624 1.145571 AGTTGGGGTGGAGCAACTTA 58.854 50.000 0.00 0.00 34.63 2.24
5538 6625 0.261696 AAGTTGGGGTGGAGCAACTT 59.738 50.000 0.00 0.00 41.36 2.66
5539 6626 1.145571 TAAGTTGGGGTGGAGCAACT 58.854 50.000 0.00 0.00 39.27 3.16
5540 6627 1.989706 TTAAGTTGGGGTGGAGCAAC 58.010 50.000 0.00 0.00 0.00 4.17
5541 6628 2.696187 GTTTTAAGTTGGGGTGGAGCAA 59.304 45.455 0.00 0.00 0.00 3.91
5542 6629 2.091555 AGTTTTAAGTTGGGGTGGAGCA 60.092 45.455 0.00 0.00 0.00 4.26
5543 6630 2.296190 CAGTTTTAAGTTGGGGTGGAGC 59.704 50.000 0.00 0.00 0.00 4.70
5544 6631 2.890945 CCAGTTTTAAGTTGGGGTGGAG 59.109 50.000 0.00 0.00 0.00 3.86
5545 6632 2.245287 ACCAGTTTTAAGTTGGGGTGGA 59.755 45.455 0.00 0.00 36.28 4.02
5546 6633 2.673258 ACCAGTTTTAAGTTGGGGTGG 58.327 47.619 6.84 0.00 36.28 4.61
5547 6634 4.891168 ACTTACCAGTTTTAAGTTGGGGTG 59.109 41.667 0.00 0.00 36.55 4.61
5548 6635 5.133383 ACTTACCAGTTTTAAGTTGGGGT 57.867 39.130 6.84 0.00 36.55 4.95
5549 6636 5.009310 GTGACTTACCAGTTTTAAGTTGGGG 59.991 44.000 6.84 0.00 39.40 4.96
5550 6637 6.068473 GTGACTTACCAGTTTTAAGTTGGG 57.932 41.667 6.84 0.00 39.40 4.12
5565 6652 0.879090 CGCAAAAGGGGGTGACTTAC 59.121 55.000 0.00 0.00 0.00 2.34
5566 6653 0.475044 ACGCAAAAGGGGGTGACTTA 59.525 50.000 0.00 0.00 32.17 2.24
5567 6654 1.229076 ACGCAAAAGGGGGTGACTT 59.771 52.632 0.00 0.00 32.17 3.01
5568 6655 2.923837 ACGCAAAAGGGGGTGACT 59.076 55.556 0.00 0.00 32.17 3.41
5576 6663 2.203422 TGGGACCCACGCAAAAGG 60.203 61.111 9.95 0.00 38.47 3.11
5577 6664 3.039134 GTGGGACCCACGCAAAAG 58.961 61.111 27.79 0.00 44.95 2.27
5585 6672 0.698198 TGTAAAGGTGGTGGGACCCA 60.698 55.000 9.95 9.95 37.50 4.51
5586 6673 0.702316 ATGTAAAGGTGGTGGGACCC 59.298 55.000 2.45 2.45 37.50 4.46
5587 6674 3.724732 TTATGTAAAGGTGGTGGGACC 57.275 47.619 0.00 0.00 39.22 4.46
5607 6694 4.252878 CACACCTTTTCACCTTGCTTTTT 58.747 39.130 0.00 0.00 0.00 1.94
5608 6695 3.369366 CCACACCTTTTCACCTTGCTTTT 60.369 43.478 0.00 0.00 0.00 2.27
5609 6696 2.168313 CCACACCTTTTCACCTTGCTTT 59.832 45.455 0.00 0.00 0.00 3.51
5610 6697 1.756538 CCACACCTTTTCACCTTGCTT 59.243 47.619 0.00 0.00 0.00 3.91
5611 6698 1.341976 ACCACACCTTTTCACCTTGCT 60.342 47.619 0.00 0.00 0.00 3.91
5612 6699 1.111277 ACCACACCTTTTCACCTTGC 58.889 50.000 0.00 0.00 0.00 4.01
5613 6700 3.317993 CCTAACCACACCTTTTCACCTTG 59.682 47.826 0.00 0.00 0.00 3.61
5614 6701 3.053170 ACCTAACCACACCTTTTCACCTT 60.053 43.478 0.00 0.00 0.00 3.50
5615 6702 2.512476 ACCTAACCACACCTTTTCACCT 59.488 45.455 0.00 0.00 0.00 4.00
5616 6703 2.621526 CACCTAACCACACCTTTTCACC 59.378 50.000 0.00 0.00 0.00 4.02
5617 6704 3.314357 GTCACCTAACCACACCTTTTCAC 59.686 47.826 0.00 0.00 0.00 3.18
5618 6705 3.201266 AGTCACCTAACCACACCTTTTCA 59.799 43.478 0.00 0.00 0.00 2.69
5619 6706 3.816994 AGTCACCTAACCACACCTTTTC 58.183 45.455 0.00 0.00 0.00 2.29
5620 6707 3.945640 AGTCACCTAACCACACCTTTT 57.054 42.857 0.00 0.00 0.00 2.27
5621 6708 3.945640 AAGTCACCTAACCACACCTTT 57.054 42.857 0.00 0.00 0.00 3.11
5622 6709 6.271624 ACTTATAAGTCACCTAACCACACCTT 59.728 38.462 12.50 0.00 32.86 3.50
5623 6710 5.783875 ACTTATAAGTCACCTAACCACACCT 59.216 40.000 12.50 0.00 32.86 4.00
5624 6711 6.046290 ACTTATAAGTCACCTAACCACACC 57.954 41.667 12.50 0.00 32.86 4.16
5638 6725 7.936847 TGTTTGGTTGTCATCTGACTTATAAGT 59.063 33.333 18.05 18.05 44.99 2.24
5639 6726 8.322906 TGTTTGGTTGTCATCTGACTTATAAG 57.677 34.615 11.05 11.05 44.99 1.73
5640 6727 7.390440 CCTGTTTGGTTGTCATCTGACTTATAA 59.610 37.037 11.35 0.00 44.99 0.98
5641 6728 6.878923 CCTGTTTGGTTGTCATCTGACTTATA 59.121 38.462 11.35 0.00 44.99 0.98
5642 6729 5.707298 CCTGTTTGGTTGTCATCTGACTTAT 59.293 40.000 11.35 0.00 44.99 1.73
5643 6730 5.063204 CCTGTTTGGTTGTCATCTGACTTA 58.937 41.667 11.35 0.00 44.99 2.24
5644 6731 3.885297 CCTGTTTGGTTGTCATCTGACTT 59.115 43.478 11.35 0.00 44.99 3.01
5645 6732 3.480470 CCTGTTTGGTTGTCATCTGACT 58.520 45.455 11.35 0.00 44.99 3.41
5646 6733 2.030805 GCCTGTTTGGTTGTCATCTGAC 60.031 50.000 3.34 3.34 40.76 3.51
5647 6734 2.229792 GCCTGTTTGGTTGTCATCTGA 58.770 47.619 0.00 0.00 38.35 3.27
5648 6735 1.069022 CGCCTGTTTGGTTGTCATCTG 60.069 52.381 0.00 0.00 38.35 2.90
5649 6736 1.238439 CGCCTGTTTGGTTGTCATCT 58.762 50.000 0.00 0.00 38.35 2.90
5650 6737 0.951558 ACGCCTGTTTGGTTGTCATC 59.048 50.000 0.00 0.00 38.35 2.92
5651 6738 0.667993 CACGCCTGTTTGGTTGTCAT 59.332 50.000 0.00 0.00 38.35 3.06
5652 6739 0.393132 TCACGCCTGTTTGGTTGTCA 60.393 50.000 0.00 0.00 38.35 3.58
5653 6740 0.028902 GTCACGCCTGTTTGGTTGTC 59.971 55.000 0.00 0.00 38.35 3.18
5654 6741 0.393808 AGTCACGCCTGTTTGGTTGT 60.394 50.000 0.00 0.00 38.35 3.32
5655 6742 0.738389 AAGTCACGCCTGTTTGGTTG 59.262 50.000 0.00 0.00 38.35 3.77
5656 6743 2.335316 TAAGTCACGCCTGTTTGGTT 57.665 45.000 0.00 0.00 38.35 3.67
5657 6744 2.561478 ATAAGTCACGCCTGTTTGGT 57.439 45.000 0.00 0.00 38.35 3.67
5658 6745 4.000988 ACTTATAAGTCACGCCTGTTTGG 58.999 43.478 12.50 0.00 32.86 3.28
5693 6780 8.611654 TGTTTGGTTCTAATAAGTCAGGTAAC 57.388 34.615 0.00 0.00 0.00 2.50
5694 6781 7.881232 CCTGTTTGGTTCTAATAAGTCAGGTAA 59.119 37.037 0.00 0.00 35.46 2.85
5695 6782 7.391620 CCTGTTTGGTTCTAATAAGTCAGGTA 58.608 38.462 0.00 0.00 35.46 3.08
5696 6783 6.238648 CCTGTTTGGTTCTAATAAGTCAGGT 58.761 40.000 0.00 0.00 35.46 4.00
5697 6784 5.123979 GCCTGTTTGGTTCTAATAAGTCAGG 59.876 44.000 0.00 0.00 40.81 3.86
5698 6785 5.123979 GGCCTGTTTGGTTCTAATAAGTCAG 59.876 44.000 0.00 0.00 38.35 3.51
5699 6786 5.007682 GGCCTGTTTGGTTCTAATAAGTCA 58.992 41.667 0.00 0.00 38.35 3.41
5700 6787 4.398358 GGGCCTGTTTGGTTCTAATAAGTC 59.602 45.833 0.84 0.00 38.35 3.01
5701 6788 4.044191 AGGGCCTGTTTGGTTCTAATAAGT 59.956 41.667 4.50 0.00 38.35 2.24
5702 6789 4.600062 AGGGCCTGTTTGGTTCTAATAAG 58.400 43.478 4.50 0.00 38.35 1.73
5703 6790 4.668138 AGGGCCTGTTTGGTTCTAATAA 57.332 40.909 4.50 0.00 38.35 1.40
5704 6791 5.751586 CTTAGGGCCTGTTTGGTTCTAATA 58.248 41.667 18.53 0.00 38.35 0.98
5705 6792 4.600062 CTTAGGGCCTGTTTGGTTCTAAT 58.400 43.478 18.53 0.00 38.35 1.73
5706 6793 3.812882 GCTTAGGGCCTGTTTGGTTCTAA 60.813 47.826 18.53 0.00 38.35 2.10
5707 6794 2.290705 GCTTAGGGCCTGTTTGGTTCTA 60.291 50.000 18.53 0.00 38.35 2.10
5708 6795 1.547901 GCTTAGGGCCTGTTTGGTTCT 60.548 52.381 18.53 0.00 38.35 3.01
5709 6796 0.888619 GCTTAGGGCCTGTTTGGTTC 59.111 55.000 18.53 0.00 38.35 3.62
5710 6797 0.187361 TGCTTAGGGCCTGTTTGGTT 59.813 50.000 18.53 0.00 40.92 3.67
5711 6798 0.251341 CTGCTTAGGGCCTGTTTGGT 60.251 55.000 18.53 0.00 40.92 3.67
5712 6799 0.967380 CCTGCTTAGGGCCTGTTTGG 60.967 60.000 18.53 8.14 40.92 3.28
5713 6800 0.038166 TCCTGCTTAGGGCCTGTTTG 59.962 55.000 18.53 4.40 40.92 2.93
5714 6801 1.002857 ATCCTGCTTAGGGCCTGTTT 58.997 50.000 18.53 0.00 40.92 2.83
5715 6802 0.257039 CATCCTGCTTAGGGCCTGTT 59.743 55.000 18.53 0.00 40.92 3.16
5716 6803 0.621571 TCATCCTGCTTAGGGCCTGT 60.622 55.000 18.53 0.00 40.92 4.00
5717 6804 0.548031 TTCATCCTGCTTAGGGCCTG 59.452 55.000 18.53 0.23 40.92 4.85
5718 6805 0.842635 CTTCATCCTGCTTAGGGCCT 59.157 55.000 12.58 12.58 40.92 5.19
5719 6806 0.179006 CCTTCATCCTGCTTAGGGCC 60.179 60.000 0.00 0.00 40.92 5.80
5720 6807 0.179006 CCCTTCATCCTGCTTAGGGC 60.179 60.000 0.00 0.00 39.18 5.19
5721 6808 1.511613 TCCCTTCATCCTGCTTAGGG 58.488 55.000 0.00 0.00 45.71 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.