Multiple sequence alignment - TraesCS3A01G098400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G098400 chr3A 100.000 3368 0 0 1 3368 63484329 63487696 0.000000e+00 6220.0
1 TraesCS3A01G098400 chr3A 82.026 1708 235 37 770 2438 94183750 94182076 0.000000e+00 1387.0
2 TraesCS3A01G098400 chr3A 81.535 1511 207 41 885 2353 94187551 94186071 0.000000e+00 1179.0
3 TraesCS3A01G098400 chr3A 83.032 1108 159 17 1286 2369 94107021 94108123 0.000000e+00 977.0
4 TraesCS3A01G098400 chr3A 81.078 983 131 25 1387 2353 94102326 94103269 0.000000e+00 734.0
5 TraesCS3A01G098400 chr3A 86.013 622 69 14 2609 3215 686164208 686164826 0.000000e+00 651.0
6 TraesCS3A01G098400 chr3A 82.292 672 96 16 2609 3267 529109112 529108451 8.160000e-156 560.0
7 TraesCS3A01G098400 chr3A 84.405 513 49 11 2865 3368 109144630 109145120 3.040000e-130 475.0
8 TraesCS3A01G098400 chr3A 90.523 306 25 4 3065 3368 7122126 7122429 5.230000e-108 401.0
9 TraesCS3A01G098400 chr3D 90.950 2011 120 27 619 2608 50424610 50426579 0.000000e+00 2649.0
10 TraesCS3A01G098400 chr3D 82.060 1806 242 43 693 2446 80479058 80477283 0.000000e+00 1465.0
11 TraesCS3A01G098400 chr3D 81.523 1510 208 44 885 2353 80569121 80567642 0.000000e+00 1177.0
12 TraesCS3A01G098400 chr3D 81.275 1506 210 37 889 2353 80262776 80264250 0.000000e+00 1153.0
13 TraesCS3A01G098400 chr3B 90.264 1818 112 22 623 2410 79978741 79980523 0.000000e+00 2316.0
14 TraesCS3A01G098400 chr3B 80.926 1835 248 51 672 2454 126303169 126301385 0.000000e+00 1356.0
15 TraesCS3A01G098400 chr3B 81.486 1507 208 39 889 2353 126310878 126309401 0.000000e+00 1171.0
16 TraesCS3A01G098400 chr3B 75.219 1372 258 55 1030 2349 126299495 126298154 2.910000e-160 575.0
17 TraesCS3A01G098400 chr2A 85.417 672 73 17 2609 3265 775039821 775039160 0.000000e+00 675.0
18 TraesCS3A01G098400 chr4A 83.159 766 99 20 2609 3365 91734758 91735502 0.000000e+00 673.0
19 TraesCS3A01G098400 chr4A 76.667 510 76 21 2865 3368 648751057 648750585 3.360000e-60 243.0
20 TraesCS3A01G098400 chr4A 77.749 391 45 18 2984 3368 626329838 626329484 5.700000e-48 202.0
21 TraesCS3A01G098400 chr4A 91.597 119 8 2 3250 3368 584348231 584348115 2.690000e-36 163.0
22 TraesCS3A01G098400 chr5D 84.695 673 82 19 2609 3267 410841627 410840962 0.000000e+00 652.0
23 TraesCS3A01G098400 chr5A 84.250 673 81 22 2609 3265 16994647 16995310 1.710000e-177 632.0
24 TraesCS3A01G098400 chr7B 84.361 665 81 18 2609 3266 34845167 34844519 6.130000e-177 630.0
25 TraesCS3A01G098400 chr6D 84.628 618 75 14 2607 3215 397262189 397261583 6.220000e-167 597.0
26 TraesCS3A01G098400 chr6D 82.985 670 92 16 2608 3267 368108254 368108911 1.350000e-163 586.0
27 TraesCS3A01G098400 chr6D 84.932 73 10 1 346 418 385959064 385958993 4.660000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G098400 chr3A 63484329 63487696 3367 False 6220.0 6220 100.0000 1 3368 1 chr3A.!!$F2 3367
1 TraesCS3A01G098400 chr3A 94182076 94187551 5475 True 1283.0 1387 81.7805 770 2438 2 chr3A.!!$R2 1668
2 TraesCS3A01G098400 chr3A 94102326 94108123 5797 False 855.5 977 82.0550 1286 2369 2 chr3A.!!$F5 1083
3 TraesCS3A01G098400 chr3A 686164208 686164826 618 False 651.0 651 86.0130 2609 3215 1 chr3A.!!$F4 606
4 TraesCS3A01G098400 chr3A 529108451 529109112 661 True 560.0 560 82.2920 2609 3267 1 chr3A.!!$R1 658
5 TraesCS3A01G098400 chr3D 50424610 50426579 1969 False 2649.0 2649 90.9500 619 2608 1 chr3D.!!$F1 1989
6 TraesCS3A01G098400 chr3D 80477283 80479058 1775 True 1465.0 1465 82.0600 693 2446 1 chr3D.!!$R1 1753
7 TraesCS3A01G098400 chr3D 80567642 80569121 1479 True 1177.0 1177 81.5230 885 2353 1 chr3D.!!$R2 1468
8 TraesCS3A01G098400 chr3D 80262776 80264250 1474 False 1153.0 1153 81.2750 889 2353 1 chr3D.!!$F2 1464
9 TraesCS3A01G098400 chr3B 79978741 79980523 1782 False 2316.0 2316 90.2640 623 2410 1 chr3B.!!$F1 1787
10 TraesCS3A01G098400 chr3B 126309401 126310878 1477 True 1171.0 1171 81.4860 889 2353 1 chr3B.!!$R1 1464
11 TraesCS3A01G098400 chr3B 126298154 126303169 5015 True 965.5 1356 78.0725 672 2454 2 chr3B.!!$R2 1782
12 TraesCS3A01G098400 chr2A 775039160 775039821 661 True 675.0 675 85.4170 2609 3265 1 chr2A.!!$R1 656
13 TraesCS3A01G098400 chr4A 91734758 91735502 744 False 673.0 673 83.1590 2609 3365 1 chr4A.!!$F1 756
14 TraesCS3A01G098400 chr5D 410840962 410841627 665 True 652.0 652 84.6950 2609 3267 1 chr5D.!!$R1 658
15 TraesCS3A01G098400 chr5A 16994647 16995310 663 False 632.0 632 84.2500 2609 3265 1 chr5A.!!$F1 656
16 TraesCS3A01G098400 chr7B 34844519 34845167 648 True 630.0 630 84.3610 2609 3266 1 chr7B.!!$R1 657
17 TraesCS3A01G098400 chr6D 397261583 397262189 606 True 597.0 597 84.6280 2607 3215 1 chr6D.!!$R2 608
18 TraesCS3A01G098400 chr6D 368108254 368108911 657 False 586.0 586 82.9850 2608 3267 1 chr6D.!!$F1 659

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
762 763 0.026803 CGCTCGTGCTAAATTGGAGC 59.973 55.0 7.97 5.79 44.97 4.7 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2592 5760 0.388907 TCCCATCGTTCGTTCGTTCC 60.389 55.0 2.67 0.0 0.0 3.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.425237 GATAACCTAATCTTAGTCTAGGGCTT 57.575 38.462 11.84 3.85 37.17 4.35
26 27 6.487299 AACCTAATCTTAGTCTAGGGCTTG 57.513 41.667 11.84 0.00 37.17 4.01
27 28 5.778542 ACCTAATCTTAGTCTAGGGCTTGA 58.221 41.667 11.84 0.00 37.17 3.02
28 29 5.836358 ACCTAATCTTAGTCTAGGGCTTGAG 59.164 44.000 11.84 0.00 37.17 3.02
29 30 5.245075 CCTAATCTTAGTCTAGGGCTTGAGG 59.755 48.000 0.00 0.00 0.00 3.86
30 31 3.759815 TCTTAGTCTAGGGCTTGAGGT 57.240 47.619 0.00 0.00 0.00 3.85
31 32 4.875578 TCTTAGTCTAGGGCTTGAGGTA 57.124 45.455 0.00 0.00 0.00 3.08
32 33 4.794334 TCTTAGTCTAGGGCTTGAGGTAG 58.206 47.826 0.00 0.00 0.00 3.18
33 34 4.477581 TCTTAGTCTAGGGCTTGAGGTAGA 59.522 45.833 0.00 0.00 0.00 2.59
34 35 3.306472 AGTCTAGGGCTTGAGGTAGAG 57.694 52.381 0.00 0.00 0.00 2.43
35 36 1.684450 GTCTAGGGCTTGAGGTAGAGC 59.316 57.143 0.00 0.00 38.17 4.09
36 37 1.571457 TCTAGGGCTTGAGGTAGAGCT 59.429 52.381 0.00 0.00 38.89 4.09
37 38 1.960689 CTAGGGCTTGAGGTAGAGCTC 59.039 57.143 5.27 5.27 39.71 4.09
38 39 1.040339 AGGGCTTGAGGTAGAGCTCG 61.040 60.000 8.37 0.00 44.11 5.03
39 40 1.439644 GGCTTGAGGTAGAGCTCGG 59.560 63.158 8.37 1.67 38.89 4.63
40 41 1.324005 GGCTTGAGGTAGAGCTCGGT 61.324 60.000 8.37 0.00 38.89 4.69
41 42 0.101579 GCTTGAGGTAGAGCTCGGTC 59.898 60.000 8.37 4.50 36.01 4.79
43 44 2.028130 CTTGAGGTAGAGCTCGGTCAT 58.972 52.381 8.37 0.16 0.00 3.06
44 45 1.681538 TGAGGTAGAGCTCGGTCATC 58.318 55.000 8.37 10.29 0.00 2.92
46 47 0.180642 AGGTAGAGCTCGGTCATCGA 59.819 55.000 8.37 0.00 46.77 3.59
47 48 0.308376 GGTAGAGCTCGGTCATCGAC 59.692 60.000 8.37 0.00 43.74 4.20
56 57 1.359475 GGTCATCGACCGGTAGAGC 59.641 63.158 22.19 15.88 43.14 4.09
57 58 1.381928 GGTCATCGACCGGTAGAGCA 61.382 60.000 22.19 8.74 43.14 4.26
58 59 0.248539 GTCATCGACCGGTAGAGCAC 60.249 60.000 22.19 16.28 0.00 4.40
60 61 1.748122 ATCGACCGGTAGAGCACGT 60.748 57.895 22.19 2.70 0.00 4.49
62 63 0.673333 TCGACCGGTAGAGCACGTAA 60.673 55.000 13.95 0.00 0.00 3.18
65 66 1.585521 CCGGTAGAGCACGTAAGCG 60.586 63.158 0.00 0.00 45.62 4.68
67 68 0.589229 CGGTAGAGCACGTAAGCGAG 60.589 60.000 0.00 0.00 45.62 5.03
74 75 1.633171 CACGTAAGCGAGCTCATGC 59.367 57.895 15.40 10.11 45.62 4.06
76 77 2.240500 CGTAAGCGAGCTCATGCCC 61.241 63.158 15.40 0.59 41.33 5.36
77 78 1.889573 GTAAGCGAGCTCATGCCCC 60.890 63.158 15.40 0.00 40.80 5.80
80 81 4.925861 GCGAGCTCATGCCCCTCC 62.926 72.222 15.40 0.00 40.80 4.30
81 82 3.160047 CGAGCTCATGCCCCTCCT 61.160 66.667 15.40 0.00 40.80 3.69
82 83 2.828145 GAGCTCATGCCCCTCCTC 59.172 66.667 9.40 0.00 40.80 3.71
83 84 3.160047 AGCTCATGCCCCTCCTCG 61.160 66.667 0.00 0.00 40.80 4.63
94 95 4.521062 CTCCTCGGCCGCCTCAAG 62.521 72.222 23.51 12.55 0.00 3.02
116 117 4.681978 GTGGCGGCACCGTCTTCT 62.682 66.667 30.25 0.00 45.16 2.85
126 127 2.721167 CCGTCTTCTCCGGCCATGA 61.721 63.158 2.24 0.00 38.85 3.07
127 128 1.519455 CGTCTTCTCCGGCCATGAC 60.519 63.158 2.24 2.51 0.00 3.06
128 129 1.153349 GTCTTCTCCGGCCATGACC 60.153 63.158 2.24 0.00 0.00 4.02
136 137 2.044946 GGCCATGACCGCCTCTTT 60.045 61.111 0.00 0.00 43.48 2.52
139 140 1.079127 CCATGACCGCCTCTTTCGT 60.079 57.895 0.00 0.00 0.00 3.85
140 141 1.084370 CCATGACCGCCTCTTTCGTC 61.084 60.000 0.00 0.00 0.00 4.20
141 142 0.108615 CATGACCGCCTCTTTCGTCT 60.109 55.000 0.00 0.00 0.00 4.18
142 143 0.173708 ATGACCGCCTCTTTCGTCTC 59.826 55.000 0.00 0.00 0.00 3.36
143 144 1.176619 TGACCGCCTCTTTCGTCTCA 61.177 55.000 0.00 0.00 0.00 3.27
146 147 0.807667 CCGCCTCTTTCGTCTCATGG 60.808 60.000 0.00 0.00 0.00 3.66
147 148 0.173481 CGCCTCTTTCGTCTCATGGA 59.827 55.000 0.00 0.00 0.00 3.41
152 153 1.133216 TCTTTCGTCTCATGGAGCTCG 59.867 52.381 7.83 0.00 0.00 5.03
153 154 1.133216 CTTTCGTCTCATGGAGCTCGA 59.867 52.381 7.83 3.70 35.50 4.04
155 156 0.947960 TCGTCTCATGGAGCTCGATC 59.052 55.000 8.44 0.00 33.78 3.69
156 157 0.950836 CGTCTCATGGAGCTCGATCT 59.049 55.000 8.44 0.00 32.32 2.75
164 165 3.248630 GAGCTCGATCTCCGCCTCG 62.249 68.421 4.91 0.00 38.37 4.63
165 166 4.992294 GCTCGATCTCCGCCTCGC 62.992 72.222 0.00 0.00 38.37 5.03
176 177 4.821589 GCCTCGCGGAGACCCTTG 62.822 72.222 6.13 0.00 0.00 3.61
177 178 4.148825 CCTCGCGGAGACCCTTGG 62.149 72.222 6.13 0.00 0.00 3.61
178 179 3.382832 CTCGCGGAGACCCTTGGT 61.383 66.667 6.13 0.00 39.44 3.67
179 180 3.649277 CTCGCGGAGACCCTTGGTG 62.649 68.421 6.13 0.00 35.25 4.17
180 181 3.691342 CGCGGAGACCCTTGGTGA 61.691 66.667 0.00 0.00 35.25 4.02
181 182 2.990479 GCGGAGACCCTTGGTGAT 59.010 61.111 0.00 0.00 35.25 3.06
189 190 1.229145 CCCTTGGTGATGGGCCAAA 60.229 57.895 11.89 0.00 44.37 3.28
190 191 0.835543 CCCTTGGTGATGGGCCAAAA 60.836 55.000 11.89 0.00 44.37 2.44
191 192 0.321346 CCTTGGTGATGGGCCAAAAC 59.679 55.000 11.89 12.15 44.37 2.43
192 193 0.038343 CTTGGTGATGGGCCAAAACG 60.038 55.000 11.89 0.00 44.37 3.60
193 194 2.093537 TTGGTGATGGGCCAAAACGC 62.094 55.000 11.89 11.85 42.39 4.84
202 203 2.045340 CCAAAACGCCTCCCCGAT 60.045 61.111 0.00 0.00 0.00 4.18
203 204 2.112815 CCAAAACGCCTCCCCGATC 61.113 63.158 0.00 0.00 0.00 3.69
204 205 1.078426 CAAAACGCCTCCCCGATCT 60.078 57.895 0.00 0.00 0.00 2.75
207 208 4.816984 ACGCCTCCCCGATCTCGT 62.817 66.667 0.00 0.00 37.74 4.18
208 209 3.967335 CGCCTCCCCGATCTCGTC 61.967 72.222 0.00 0.00 37.74 4.20
218 219 3.243855 GATCTCGTCGAACTGGCTC 57.756 57.895 0.00 0.00 0.00 4.70
219 220 0.248702 GATCTCGTCGAACTGGCTCC 60.249 60.000 0.00 0.00 0.00 4.70
220 221 0.965866 ATCTCGTCGAACTGGCTCCA 60.966 55.000 0.00 0.00 0.00 3.86
221 222 1.444553 CTCGTCGAACTGGCTCCAC 60.445 63.158 0.00 0.00 0.00 4.02
222 223 2.805353 CGTCGAACTGGCTCCACG 60.805 66.667 0.00 0.00 0.00 4.94
254 255 4.135153 CTGTGGGAGAGGGCGTCG 62.135 72.222 0.96 0.00 0.00 5.12
268 269 3.260483 GTCGCGCTCTCTGGCATG 61.260 66.667 5.56 0.00 0.00 4.06
271 272 2.900838 GCGCTCTCTGGCATGCAT 60.901 61.111 21.36 0.00 0.00 3.96
272 273 2.894565 GCGCTCTCTGGCATGCATC 61.895 63.158 21.36 3.15 0.00 3.91
273 274 2.595878 CGCTCTCTGGCATGCATCG 61.596 63.158 21.36 6.90 0.00 3.84
274 275 1.227468 GCTCTCTGGCATGCATCGA 60.227 57.895 21.36 11.05 0.00 3.59
275 276 1.222766 GCTCTCTGGCATGCATCGAG 61.223 60.000 21.36 19.63 0.00 4.04
276 277 1.222766 CTCTCTGGCATGCATCGAGC 61.223 60.000 21.36 0.00 45.96 5.03
294 295 4.409218 GCCATGGCTGCGTGTGTG 62.409 66.667 29.98 0.00 38.26 3.82
295 296 2.979676 CCATGGCTGCGTGTGTGT 60.980 61.111 0.00 0.00 0.00 3.72
297 298 3.663176 ATGGCTGCGTGTGTGTGC 61.663 61.111 0.00 0.00 0.00 4.57
301 302 3.261216 CTGCGTGTGTGTGCGTGA 61.261 61.111 0.00 0.00 0.00 4.35
302 303 3.214306 CTGCGTGTGTGTGCGTGAG 62.214 63.158 0.00 0.00 0.00 3.51
303 304 2.959599 GCGTGTGTGTGCGTGAGA 60.960 61.111 0.00 0.00 0.00 3.27
304 305 2.521771 GCGTGTGTGTGCGTGAGAA 61.522 57.895 0.00 0.00 0.00 2.87
305 306 2.002899 CGTGTGTGTGCGTGAGAAA 58.997 52.632 0.00 0.00 0.00 2.52
318 319 2.673833 GTGAGAAACGATCACCGAAGT 58.326 47.619 0.00 0.00 40.99 3.01
319 320 3.829948 GTGAGAAACGATCACCGAAGTA 58.170 45.455 0.00 0.00 40.99 2.24
320 321 3.852536 GTGAGAAACGATCACCGAAGTAG 59.147 47.826 0.00 0.00 40.99 2.57
321 322 3.119602 TGAGAAACGATCACCGAAGTAGG 60.120 47.826 0.00 0.00 41.76 3.18
322 323 2.165845 AGAAACGATCACCGAAGTAGGG 59.834 50.000 0.00 0.00 41.76 3.53
323 324 0.822164 AACGATCACCGAAGTAGGGG 59.178 55.000 0.00 0.00 41.76 4.79
324 325 1.041447 ACGATCACCGAAGTAGGGGG 61.041 60.000 0.00 0.00 41.76 5.40
325 326 1.041447 CGATCACCGAAGTAGGGGGT 61.041 60.000 0.00 0.00 41.76 4.95
326 327 1.201424 GATCACCGAAGTAGGGGGTT 58.799 55.000 0.00 0.00 34.80 4.11
328 329 0.688487 TCACCGAAGTAGGGGGTTTG 59.312 55.000 0.00 0.00 34.80 2.93
330 331 1.378119 CCGAAGTAGGGGGTTTGCC 60.378 63.158 0.00 0.00 0.00 4.52
331 332 1.743995 CGAAGTAGGGGGTTTGCCG 60.744 63.158 0.00 0.00 34.97 5.69
332 333 2.035155 AAGTAGGGGGTTTGCCGC 59.965 61.111 0.00 0.00 45.93 6.53
339 340 2.028925 GGGTTTGCCGCCAAAGTG 59.971 61.111 0.00 0.00 41.32 3.16
350 351 1.736696 CGCCAAAGTGGATGGATTTGC 60.737 52.381 0.00 0.00 40.96 3.68
351 352 1.736696 GCCAAAGTGGATGGATTTGCG 60.737 52.381 0.00 0.00 40.96 4.85
352 353 1.818060 CCAAAGTGGATGGATTTGCGA 59.182 47.619 0.00 0.00 40.96 5.10
353 354 2.415893 CCAAAGTGGATGGATTTGCGAC 60.416 50.000 0.00 0.00 40.96 5.19
354 355 1.086696 AAGTGGATGGATTTGCGACG 58.913 50.000 0.00 0.00 0.00 5.12
357 358 0.461870 TGGATGGATTTGCGACGGAG 60.462 55.000 0.00 0.00 0.00 4.63
358 359 1.160329 GGATGGATTTGCGACGGAGG 61.160 60.000 0.00 0.00 0.00 4.30
359 360 1.776034 GATGGATTTGCGACGGAGGC 61.776 60.000 0.00 0.00 0.00 4.70
372 373 2.440247 GAGGCGGGTGGGGAAATG 60.440 66.667 0.00 0.00 0.00 2.32
377 378 4.055227 GGGTGGGGAAATGCCGGA 62.055 66.667 5.05 0.00 37.63 5.14
378 379 2.278738 GGTGGGGAAATGCCGGAT 59.721 61.111 5.05 0.00 37.63 4.18
379 380 1.534697 GGTGGGGAAATGCCGGATA 59.465 57.895 5.05 0.00 37.63 2.59
380 381 0.537371 GGTGGGGAAATGCCGGATAG 60.537 60.000 5.05 0.00 37.63 2.08
381 382 0.537371 GTGGGGAAATGCCGGATAGG 60.537 60.000 5.05 0.00 44.97 2.57
382 383 0.696143 TGGGGAAATGCCGGATAGGA 60.696 55.000 5.05 0.00 45.00 2.94
385 386 2.437413 GGGAAATGCCGGATAGGAATC 58.563 52.381 5.05 0.00 37.24 2.52
399 400 6.133253 GATAGGAATCCTAAATTGGCCTCT 57.867 41.667 13.68 0.00 39.77 3.69
400 401 7.259088 GATAGGAATCCTAAATTGGCCTCTA 57.741 40.000 13.68 0.00 39.77 2.43
401 402 7.837359 ATAGGAATCCTAAATTGGCCTCTAT 57.163 36.000 13.68 0.00 39.77 1.98
403 404 5.014649 AGGAATCCTAAATTGGCCTCTATCC 59.985 44.000 0.00 0.00 28.47 2.59
405 406 2.637872 TCCTAAATTGGCCTCTATCCCG 59.362 50.000 3.32 0.00 0.00 5.14
406 407 2.372172 CCTAAATTGGCCTCTATCCCGT 59.628 50.000 3.32 0.00 0.00 5.28
407 408 3.581332 CCTAAATTGGCCTCTATCCCGTA 59.419 47.826 3.32 0.00 0.00 4.02
408 409 4.041198 CCTAAATTGGCCTCTATCCCGTAA 59.959 45.833 3.32 0.00 0.00 3.18
409 410 4.513406 AAATTGGCCTCTATCCCGTAAA 57.487 40.909 3.32 0.00 0.00 2.01
410 411 4.724279 AATTGGCCTCTATCCCGTAAAT 57.276 40.909 3.32 0.00 0.00 1.40
411 412 5.836024 AATTGGCCTCTATCCCGTAAATA 57.164 39.130 3.32 0.00 0.00 1.40
412 413 6.388619 AATTGGCCTCTATCCCGTAAATAT 57.611 37.500 3.32 0.00 0.00 1.28
413 414 7.504926 AATTGGCCTCTATCCCGTAAATATA 57.495 36.000 3.32 0.00 0.00 0.86
415 416 5.586877 TGGCCTCTATCCCGTAAATATAGT 58.413 41.667 3.32 0.00 0.00 2.12
416 417 5.421056 TGGCCTCTATCCCGTAAATATAGTG 59.579 44.000 3.32 0.00 0.00 2.74
417 418 5.163437 GGCCTCTATCCCGTAAATATAGTGG 60.163 48.000 0.00 0.00 38.78 4.00
418 419 5.421374 GCCTCTATCCCGTAAATATAGTGGT 59.579 44.000 0.00 0.00 38.35 4.16
419 420 6.627508 GCCTCTATCCCGTAAATATAGTGGTG 60.628 46.154 0.00 0.00 38.35 4.17
420 421 6.127423 CCTCTATCCCGTAAATATAGTGGTGG 60.127 46.154 0.00 0.00 34.43 4.61
421 422 6.554784 TCTATCCCGTAAATATAGTGGTGGA 58.445 40.000 0.00 0.00 0.00 4.02
423 424 4.549668 TCCCGTAAATATAGTGGTGGAGT 58.450 43.478 0.00 0.00 0.00 3.85
424 425 4.964262 TCCCGTAAATATAGTGGTGGAGTT 59.036 41.667 0.00 0.00 0.00 3.01
425 426 5.054477 CCCGTAAATATAGTGGTGGAGTTG 58.946 45.833 0.00 0.00 0.00 3.16
426 427 5.054477 CCGTAAATATAGTGGTGGAGTTGG 58.946 45.833 0.00 0.00 0.00 3.77
427 428 5.054477 CGTAAATATAGTGGTGGAGTTGGG 58.946 45.833 0.00 0.00 0.00 4.12
428 429 5.163385 CGTAAATATAGTGGTGGAGTTGGGA 60.163 44.000 0.00 0.00 0.00 4.37
430 431 5.994416 AATATAGTGGTGGAGTTGGGATT 57.006 39.130 0.00 0.00 0.00 3.01
431 432 5.994416 ATATAGTGGTGGAGTTGGGATTT 57.006 39.130 0.00 0.00 0.00 2.17
432 433 4.675063 ATAGTGGTGGAGTTGGGATTTT 57.325 40.909 0.00 0.00 0.00 1.82
433 434 5.789574 ATAGTGGTGGAGTTGGGATTTTA 57.210 39.130 0.00 0.00 0.00 1.52
434 435 3.763057 AGTGGTGGAGTTGGGATTTTAC 58.237 45.455 0.00 0.00 0.00 2.01
435 436 2.486592 GTGGTGGAGTTGGGATTTTACG 59.513 50.000 0.00 0.00 0.00 3.18
436 437 2.089201 GGTGGAGTTGGGATTTTACGG 58.911 52.381 0.00 0.00 0.00 4.02
438 439 1.100510 GGAGTTGGGATTTTACGGGC 58.899 55.000 0.00 0.00 0.00 6.13
440 441 0.678684 AGTTGGGATTTTACGGGCCG 60.679 55.000 27.06 27.06 0.00 6.13
441 442 2.047443 TTGGGATTTTACGGGCCGC 61.047 57.895 28.71 8.32 0.00 6.53
444 445 2.478033 GGATTTTACGGGCCGCCAG 61.478 63.158 28.71 10.30 0.00 4.85
445 446 1.747745 GATTTTACGGGCCGCCAGT 60.748 57.895 28.71 19.51 35.79 4.00
446 447 0.462403 GATTTTACGGGCCGCCAGTA 60.462 55.000 28.71 17.37 33.35 2.74
448 449 0.829333 TTTTACGGGCCGCCAGTATA 59.171 50.000 28.71 14.63 34.48 1.47
449 450 1.050204 TTTACGGGCCGCCAGTATAT 58.950 50.000 28.71 6.20 34.48 0.86
451 452 1.050204 TACGGGCCGCCAGTATATTT 58.950 50.000 28.71 4.47 33.35 1.40
453 454 1.314730 CGGGCCGCCAGTATATTTTT 58.685 50.000 15.42 0.00 0.00 1.94
468 469 2.115695 TTTTTACGGGCCGGGCTT 59.884 55.556 31.78 17.45 0.00 4.35
469 470 1.531128 TTTTTACGGGCCGGGCTTT 60.531 52.632 31.78 17.07 0.00 3.51
470 471 1.114119 TTTTTACGGGCCGGGCTTTT 61.114 50.000 31.78 14.44 0.00 2.27
471 472 1.114119 TTTTACGGGCCGGGCTTTTT 61.114 50.000 31.78 9.78 0.00 1.94
489 490 4.537135 TTTTTACTGGATCTGCTCGAGT 57.463 40.909 15.13 1.94 44.22 4.18
490 491 5.654603 TTTTTACTGGATCTGCTCGAGTA 57.345 39.130 15.13 8.96 40.72 2.59
491 492 5.654603 TTTTACTGGATCTGCTCGAGTAA 57.345 39.130 15.13 10.69 46.90 2.24
493 494 5.854010 TTACTGGATCTGCTCGAGTAATT 57.146 39.130 15.13 0.00 45.02 1.40
494 495 4.744795 ACTGGATCTGCTCGAGTAATTT 57.255 40.909 15.13 0.00 40.72 1.82
495 496 5.091261 ACTGGATCTGCTCGAGTAATTTT 57.909 39.130 15.13 0.00 40.72 1.82
517 518 7.527568 TTTTTACCGGATCTTGTAAAATGGT 57.472 32.000 22.22 8.87 42.94 3.55
518 519 6.746745 TTTACCGGATCTTGTAAAATGGTC 57.253 37.500 9.46 0.00 34.84 4.02
519 520 4.295141 ACCGGATCTTGTAAAATGGTCA 57.705 40.909 9.46 0.00 0.00 4.02
521 522 4.019681 ACCGGATCTTGTAAAATGGTCAGA 60.020 41.667 9.46 0.00 0.00 3.27
522 523 4.941263 CCGGATCTTGTAAAATGGTCAGAA 59.059 41.667 0.00 0.00 0.00 3.02
523 524 5.590259 CCGGATCTTGTAAAATGGTCAGAAT 59.410 40.000 0.00 0.00 0.00 2.40
524 525 6.095440 CCGGATCTTGTAAAATGGTCAGAATT 59.905 38.462 0.00 0.00 0.00 2.17
526 527 8.840321 CGGATCTTGTAAAATGGTCAGAATTAT 58.160 33.333 0.00 0.00 0.00 1.28
533 534 6.731292 AAAATGGTCAGAATTATAAGGGCC 57.269 37.500 0.00 0.00 0.00 5.80
534 535 5.402054 AATGGTCAGAATTATAAGGGCCA 57.598 39.130 6.18 5.40 0.00 5.36
535 536 4.437682 TGGTCAGAATTATAAGGGCCAG 57.562 45.455 6.18 0.00 0.00 4.85
536 537 3.149981 GGTCAGAATTATAAGGGCCAGC 58.850 50.000 6.18 0.00 0.00 4.85
537 538 2.808543 GTCAGAATTATAAGGGCCAGCG 59.191 50.000 6.18 0.00 0.00 5.18
538 539 2.703536 TCAGAATTATAAGGGCCAGCGA 59.296 45.455 6.18 0.00 0.00 4.93
539 540 3.070018 CAGAATTATAAGGGCCAGCGAG 58.930 50.000 6.18 0.00 0.00 5.03
540 541 2.039084 AGAATTATAAGGGCCAGCGAGG 59.961 50.000 6.18 0.00 41.84 4.63
541 542 1.435256 ATTATAAGGGCCAGCGAGGT 58.565 50.000 6.18 0.00 40.61 3.85
543 544 1.209621 TATAAGGGCCAGCGAGGTTT 58.790 50.000 6.18 0.00 40.61 3.27
544 545 0.331616 ATAAGGGCCAGCGAGGTTTT 59.668 50.000 6.18 0.00 40.61 2.43
545 546 0.985760 TAAGGGCCAGCGAGGTTTTA 59.014 50.000 6.18 0.00 40.61 1.52
546 547 0.608308 AAGGGCCAGCGAGGTTTTAC 60.608 55.000 6.18 0.00 40.61 2.01
547 548 1.302993 GGGCCAGCGAGGTTTTACA 60.303 57.895 4.39 0.00 40.61 2.41
548 549 0.679960 GGGCCAGCGAGGTTTTACAT 60.680 55.000 4.39 0.00 40.61 2.29
549 550 1.407712 GGGCCAGCGAGGTTTTACATA 60.408 52.381 4.39 0.00 40.61 2.29
550 551 2.361789 GGCCAGCGAGGTTTTACATAA 58.638 47.619 0.00 0.00 40.61 1.90
551 552 2.949644 GGCCAGCGAGGTTTTACATAAT 59.050 45.455 0.00 0.00 40.61 1.28
552 553 3.003378 GGCCAGCGAGGTTTTACATAATC 59.997 47.826 0.00 0.00 40.61 1.75
553 554 3.877508 GCCAGCGAGGTTTTACATAATCT 59.122 43.478 0.00 0.00 40.61 2.40
555 556 4.260784 CCAGCGAGGTTTTACATAATCTGC 60.261 45.833 0.00 0.00 0.00 4.26
556 557 4.572389 CAGCGAGGTTTTACATAATCTGCT 59.428 41.667 0.00 0.00 0.00 4.24
557 558 5.753438 CAGCGAGGTTTTACATAATCTGCTA 59.247 40.000 0.00 0.00 0.00 3.49
558 559 5.986135 AGCGAGGTTTTACATAATCTGCTAG 59.014 40.000 0.00 0.00 0.00 3.42
559 560 5.983720 GCGAGGTTTTACATAATCTGCTAGA 59.016 40.000 0.00 0.00 0.00 2.43
560 561 6.074249 GCGAGGTTTTACATAATCTGCTAGAC 60.074 42.308 0.00 0.00 0.00 2.59
561 562 6.978659 CGAGGTTTTACATAATCTGCTAGACA 59.021 38.462 0.00 0.00 0.00 3.41
562 563 7.653713 CGAGGTTTTACATAATCTGCTAGACAT 59.346 37.037 0.00 0.00 0.00 3.06
563 564 8.668510 AGGTTTTACATAATCTGCTAGACATG 57.331 34.615 0.00 0.00 0.00 3.21
564 565 7.227512 AGGTTTTACATAATCTGCTAGACATGC 59.772 37.037 0.00 0.00 0.00 4.06
565 566 7.227512 GGTTTTACATAATCTGCTAGACATGCT 59.772 37.037 0.00 0.00 0.00 3.79
568 569 6.172136 ACATAATCTGCTAGACATGCTCTT 57.828 37.500 0.00 0.00 0.00 2.85
569 570 7.295322 ACATAATCTGCTAGACATGCTCTTA 57.705 36.000 0.00 0.00 0.00 2.10
570 571 7.377398 ACATAATCTGCTAGACATGCTCTTAG 58.623 38.462 0.00 0.00 0.00 2.18
571 572 7.232330 ACATAATCTGCTAGACATGCTCTTAGA 59.768 37.037 0.00 1.85 0.00 2.10
572 573 6.477053 AATCTGCTAGACATGCTCTTAGAA 57.523 37.500 0.00 0.00 0.00 2.10
573 574 5.512753 TCTGCTAGACATGCTCTTAGAAG 57.487 43.478 0.00 0.00 0.00 2.85
585 586 3.983044 TCTTAGAAGAGAAAGTGGGGC 57.017 47.619 0.00 0.00 0.00 5.80
586 587 3.521727 TCTTAGAAGAGAAAGTGGGGCT 58.478 45.455 0.00 0.00 0.00 5.19
587 588 3.910627 TCTTAGAAGAGAAAGTGGGGCTT 59.089 43.478 0.00 0.00 39.52 4.35
589 590 3.602205 AGAAGAGAAAGTGGGGCTTTT 57.398 42.857 0.00 0.00 46.54 2.27
590 591 3.916035 AGAAGAGAAAGTGGGGCTTTTT 58.084 40.909 0.00 0.00 46.54 1.94
609 610 5.371115 TTTTTGCGAATAGAGAAAGTGGG 57.629 39.130 0.00 0.00 0.00 4.61
610 611 2.691409 TGCGAATAGAGAAAGTGGGG 57.309 50.000 0.00 0.00 0.00 4.96
611 612 1.300481 GCGAATAGAGAAAGTGGGGC 58.700 55.000 0.00 0.00 0.00 5.80
612 613 1.134371 GCGAATAGAGAAAGTGGGGCT 60.134 52.381 0.00 0.00 0.00 5.19
613 614 2.681097 GCGAATAGAGAAAGTGGGGCTT 60.681 50.000 0.00 0.00 39.52 4.35
632 633 4.583073 GGCTTTCTAAAGAAAAGTGGGTGA 59.417 41.667 6.64 0.00 42.72 4.02
649 650 6.775629 AGTGGGTGAGCAAAAGAAAATACTAA 59.224 34.615 0.00 0.00 0.00 2.24
651 652 7.923878 GTGGGTGAGCAAAAGAAAATACTAAAA 59.076 33.333 0.00 0.00 0.00 1.52
652 653 7.923878 TGGGTGAGCAAAAGAAAATACTAAAAC 59.076 33.333 0.00 0.00 0.00 2.43
653 654 7.114388 GGGTGAGCAAAAGAAAATACTAAAACG 59.886 37.037 0.00 0.00 0.00 3.60
654 655 7.114388 GGTGAGCAAAAGAAAATACTAAAACGG 59.886 37.037 0.00 0.00 0.00 4.44
656 657 7.013464 TGAGCAAAAGAAAATACTAAAACGGGA 59.987 33.333 0.00 0.00 0.00 5.14
657 658 7.892609 AGCAAAAGAAAATACTAAAACGGGAT 58.107 30.769 0.00 0.00 0.00 3.85
658 659 8.364894 AGCAAAAGAAAATACTAAAACGGGATT 58.635 29.630 0.00 0.00 0.00 3.01
659 660 9.628746 GCAAAAGAAAATACTAAAACGGGATTA 57.371 29.630 0.00 0.00 0.00 1.75
712 713 5.635417 TGTCATGACATATTTTTGGCGAA 57.365 34.783 24.56 0.00 36.21 4.70
714 715 5.414144 TGTCATGACATATTTTTGGCGAAGA 59.586 36.000 24.56 0.00 36.21 2.87
716 717 6.806249 GTCATGACATATTTTTGGCGAAGAAA 59.194 34.615 21.07 0.00 0.00 2.52
717 718 7.328249 GTCATGACATATTTTTGGCGAAGAAAA 59.672 33.333 21.07 0.00 0.00 2.29
718 719 7.869937 TCATGACATATTTTTGGCGAAGAAAAA 59.130 29.630 0.00 0.00 36.86 1.94
738 739 3.863142 AAAATCAATCAGCTGCCTGTC 57.137 42.857 9.47 0.00 40.09 3.51
739 740 2.803030 AATCAATCAGCTGCCTGTCT 57.197 45.000 9.47 0.00 40.09 3.41
740 741 2.803030 ATCAATCAGCTGCCTGTCTT 57.197 45.000 9.47 0.00 40.09 3.01
741 742 1.817357 TCAATCAGCTGCCTGTCTTG 58.183 50.000 9.47 5.84 40.09 3.02
742 743 0.170561 CAATCAGCTGCCTGTCTTGC 59.829 55.000 9.47 0.00 40.09 4.01
743 744 0.964358 AATCAGCTGCCTGTCTTGCC 60.964 55.000 9.47 0.00 40.09 4.52
744 745 3.429141 CAGCTGCCTGTCTTGCCG 61.429 66.667 0.00 0.00 34.31 5.69
747 748 3.123620 CTGCCTGTCTTGCCGCTC 61.124 66.667 0.00 0.00 0.00 5.03
750 751 3.114616 CCTGTCTTGCCGCTCGTG 61.115 66.667 0.00 0.00 0.00 4.35
752 753 4.299547 TGTCTTGCCGCTCGTGCT 62.300 61.111 7.97 0.00 36.97 4.40
754 755 1.736645 GTCTTGCCGCTCGTGCTAA 60.737 57.895 7.97 0.00 36.97 3.09
755 756 1.005512 TCTTGCCGCTCGTGCTAAA 60.006 52.632 7.97 0.00 36.97 1.85
757 758 0.447801 CTTGCCGCTCGTGCTAAATT 59.552 50.000 7.97 0.00 36.97 1.82
760 761 1.366111 GCCGCTCGTGCTAAATTGGA 61.366 55.000 7.97 0.00 36.97 3.53
761 762 0.652592 CCGCTCGTGCTAAATTGGAG 59.347 55.000 7.97 0.00 36.97 3.86
762 763 0.026803 CGCTCGTGCTAAATTGGAGC 59.973 55.000 7.97 5.79 44.97 4.70
820 3867 5.974751 TGAACTTAATTGCCGACTTCAAAAC 59.025 36.000 0.00 0.00 0.00 2.43
823 3870 3.369546 AATTGCCGACTTCAAAACCAG 57.630 42.857 0.00 0.00 0.00 4.00
841 3888 5.269505 ACCAGTAATCTCTCTCCAATTCG 57.730 43.478 0.00 0.00 0.00 3.34
898 3945 1.102154 TGCCAAATCCTTGCATACCG 58.898 50.000 0.00 0.00 0.00 4.02
940 3999 2.319136 ATTAATACGCACCGGCAGAA 57.681 45.000 0.00 0.00 41.24 3.02
943 4002 0.739813 AATACGCACCGGCAGAAGAC 60.740 55.000 0.00 0.00 41.24 3.01
964 4023 3.328387 GCCATTAGCAAGCGATCAGCC 62.328 57.143 6.02 0.00 44.74 4.85
993 4054 3.589988 CCAGCAGTGATACGAAGAGTTT 58.410 45.455 0.00 0.00 0.00 2.66
1548 4654 1.323271 GCATCCTCTCCACCGAGACA 61.323 60.000 0.00 0.00 40.34 3.41
1779 4896 2.874780 CCCTTCTTCGTCGACGCG 60.875 66.667 32.19 23.86 39.60 6.01
1989 5106 2.045536 GACAAGGGGCTGCTGGAG 60.046 66.667 0.00 0.00 0.00 3.86
2341 5492 4.577246 GCGCCAGCTCCTACTCCG 62.577 72.222 0.00 0.00 41.01 4.63
2457 5620 0.453282 CCACAGCGATTTCAGCGTTG 60.453 55.000 0.00 0.00 43.99 4.10
2458 5621 0.512518 CACAGCGATTTCAGCGTTGA 59.487 50.000 5.25 0.00 41.54 3.18
2459 5622 1.069973 CACAGCGATTTCAGCGTTGAA 60.070 47.619 10.92 10.92 41.54 2.69
2462 5625 3.181520 ACAGCGATTTCAGCGTTGAATAC 60.182 43.478 15.71 11.24 42.60 1.89
2463 5626 3.062639 CAGCGATTTCAGCGTTGAATACT 59.937 43.478 15.71 7.92 42.60 2.12
2464 5627 3.062639 AGCGATTTCAGCGTTGAATACTG 59.937 43.478 15.71 7.45 42.60 2.74
2466 5629 4.260375 GCGATTTCAGCGTTGAATACTGAT 60.260 41.667 15.71 5.71 42.60 2.90
2467 5630 5.427082 CGATTTCAGCGTTGAATACTGATC 58.573 41.667 15.71 13.18 42.60 2.92
2468 5631 4.840401 TTTCAGCGTTGAATACTGATCG 57.160 40.909 15.71 0.00 42.60 3.69
2471 5634 3.857665 TCAGCGTTGAATACTGATCGAAC 59.142 43.478 0.00 0.00 35.58 3.95
2472 5635 2.852413 AGCGTTGAATACTGATCGAACG 59.148 45.455 0.00 0.00 39.26 3.95
2474 5637 3.787634 GCGTTGAATACTGATCGAACGTA 59.212 43.478 0.00 0.00 38.67 3.57
2497 5660 2.921634 TTTCATCTCCACGTCTCGAG 57.078 50.000 5.93 5.93 0.00 4.04
2515 5678 4.119862 TCGAGTTGATTCGGATTTGGATC 58.880 43.478 0.00 0.00 40.83 3.36
2561 5729 1.471501 CGTCAGATTTGGAGCGATCCA 60.472 52.381 20.59 20.59 38.14 3.41
2571 5739 0.731514 GAGCGATCCAACGTCGAACA 60.732 55.000 0.00 0.00 41.40 3.18
2572 5740 0.108804 AGCGATCCAACGTCGAACAT 60.109 50.000 0.00 0.00 41.40 2.71
2576 5744 3.368495 CGATCCAACGTCGAACATATCA 58.632 45.455 0.00 0.00 41.40 2.15
2577 5745 3.179795 CGATCCAACGTCGAACATATCAC 59.820 47.826 0.00 0.00 41.40 3.06
2592 5760 2.751166 ATCACTCCACTTGAAGGTCG 57.249 50.000 0.00 0.00 0.00 4.79
2685 5974 1.868997 CGCGCTCTCAACCATTTGT 59.131 52.632 5.56 0.00 34.02 2.83
2687 5976 0.179215 GCGCTCTCAACCATTTGTCG 60.179 55.000 0.00 0.00 34.02 4.35
2709 5998 3.143515 TCGCGCTCTGGATGCTCT 61.144 61.111 5.56 0.00 0.00 4.09
2721 6024 3.944015 CTGGATGCTCTCTTCGGATTTTT 59.056 43.478 0.00 0.00 0.00 1.94
2926 8468 3.441496 ACGGTCGTGACTCTTGTTAAA 57.559 42.857 0.00 0.00 0.00 1.52
2930 8473 3.059800 GGTCGTGACTCTTGTTAAAGCAC 60.060 47.826 0.00 0.00 33.06 4.40
2942 8486 3.673809 TGTTAAAGCACAAACGCGTTTTT 59.326 34.783 33.05 25.13 35.23 1.94
2974 8735 0.316204 TTTCGGGAGAGTCACGGTTC 59.684 55.000 0.00 0.00 44.75 3.62
3000 8761 2.401766 GCGAGAGGCATGGTTGTGG 61.402 63.158 0.00 0.00 42.87 4.17
3009 8770 0.309302 CATGGTTGTGGTTTCGCGAA 59.691 50.000 19.38 19.38 0.00 4.70
3143 9690 3.119096 GGCGTGCCTCTCGGAAAC 61.119 66.667 2.98 0.00 0.00 2.78
3205 10332 0.871722 TCACGATTTTGCTTCCACGG 59.128 50.000 0.00 0.00 0.00 4.94
3238 10806 2.884087 GATTTCGCGAGAGGCACGGA 62.884 60.000 9.59 0.00 43.84 4.69
3281 10849 2.141122 AAAACCATGCTTCCGGTGCG 62.141 55.000 15.08 6.05 35.08 5.34
3307 11110 1.670791 TCGCCCGGTTTATTTCATCC 58.329 50.000 0.00 0.00 0.00 3.51
3366 11169 5.832595 TCAACATGGGATCTTGTTTTGAAGA 59.167 36.000 0.00 0.00 38.63 2.87
3367 11170 6.494491 TCAACATGGGATCTTGTTTTGAAGAT 59.506 34.615 0.00 0.00 43.92 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.308207 CAAGCCCTAGACTAAGATTAGGTTATC 58.692 40.741 4.71 0.00 35.08 1.75
3 4 6.203072 TCAAGCCCTAGACTAAGATTAGGTT 58.797 40.000 4.71 0.00 35.08 3.50
4 5 5.778542 TCAAGCCCTAGACTAAGATTAGGT 58.221 41.667 4.71 0.00 35.08 3.08
5 6 5.245075 CCTCAAGCCCTAGACTAAGATTAGG 59.755 48.000 4.71 0.00 35.08 2.69
6 7 5.836358 ACCTCAAGCCCTAGACTAAGATTAG 59.164 44.000 0.00 0.00 36.82 1.73
8 9 4.625963 ACCTCAAGCCCTAGACTAAGATT 58.374 43.478 0.00 0.00 0.00 2.40
9 10 4.273300 ACCTCAAGCCCTAGACTAAGAT 57.727 45.455 0.00 0.00 0.00 2.40
11 12 4.794334 TCTACCTCAAGCCCTAGACTAAG 58.206 47.826 0.00 0.00 0.00 2.18
12 13 4.794334 CTCTACCTCAAGCCCTAGACTAA 58.206 47.826 0.00 0.00 0.00 2.24
13 14 3.435313 GCTCTACCTCAAGCCCTAGACTA 60.435 52.174 0.00 0.00 32.22 2.59
15 16 1.684450 GCTCTACCTCAAGCCCTAGAC 59.316 57.143 0.00 0.00 32.22 2.59
16 17 1.571457 AGCTCTACCTCAAGCCCTAGA 59.429 52.381 0.00 0.00 39.39 2.43
17 18 1.960689 GAGCTCTACCTCAAGCCCTAG 59.039 57.143 6.43 0.00 39.39 3.02
19 20 1.040339 CGAGCTCTACCTCAAGCCCT 61.040 60.000 12.85 0.00 39.39 5.19
21 22 1.324005 ACCGAGCTCTACCTCAAGCC 61.324 60.000 12.85 0.00 39.39 4.35
22 23 0.101579 GACCGAGCTCTACCTCAAGC 59.898 60.000 12.85 0.00 38.84 4.01
23 24 1.464734 TGACCGAGCTCTACCTCAAG 58.535 55.000 12.85 0.00 0.00 3.02
24 25 2.025155 GATGACCGAGCTCTACCTCAA 58.975 52.381 12.85 0.00 0.00 3.02
25 26 1.681538 GATGACCGAGCTCTACCTCA 58.318 55.000 12.85 7.02 0.00 3.86
26 27 0.589223 CGATGACCGAGCTCTACCTC 59.411 60.000 12.85 4.82 41.76 3.85
27 28 0.180642 TCGATGACCGAGCTCTACCT 59.819 55.000 12.85 0.00 43.23 3.08
28 29 2.704108 TCGATGACCGAGCTCTACC 58.296 57.895 12.85 0.65 43.23 3.18
39 40 0.248539 GTGCTCTACCGGTCGATGAC 60.249 60.000 12.40 6.12 0.00 3.06
40 41 1.712018 CGTGCTCTACCGGTCGATGA 61.712 60.000 12.40 4.76 0.00 2.92
41 42 1.298413 CGTGCTCTACCGGTCGATG 60.298 63.158 12.40 5.78 0.00 3.84
43 44 0.673333 TTACGTGCTCTACCGGTCGA 60.673 55.000 12.40 10.20 0.00 4.20
44 45 0.247974 CTTACGTGCTCTACCGGTCG 60.248 60.000 12.40 10.47 0.00 4.79
46 47 1.509923 GCTTACGTGCTCTACCGGT 59.490 57.895 13.98 13.98 0.00 5.28
47 48 1.585521 CGCTTACGTGCTCTACCGG 60.586 63.158 0.00 0.00 33.53 5.28
49 50 3.237522 CTCGCTTACGTGCTCTACC 57.762 57.895 0.00 0.00 41.18 3.18
56 57 1.633171 GCATGAGCTCGCTTACGTG 59.367 57.895 9.64 0.00 41.18 4.49
57 58 1.519455 GGCATGAGCTCGCTTACGT 60.519 57.895 9.64 0.00 41.70 3.57
58 59 2.240500 GGGCATGAGCTCGCTTACG 61.241 63.158 9.64 0.00 41.70 3.18
60 61 2.032860 GAGGGGCATGAGCTCGCTTA 62.033 60.000 9.64 0.00 44.30 3.09
62 63 3.859414 GAGGGGCATGAGCTCGCT 61.859 66.667 9.64 0.00 44.30 4.93
65 66 2.828145 GAGGAGGGGCATGAGCTC 59.172 66.667 6.82 6.82 41.91 4.09
67 68 4.247380 CCGAGGAGGGGCATGAGC 62.247 72.222 0.00 0.00 41.10 4.26
77 78 4.521062 CTTGAGGCGGCCGAGGAG 62.521 72.222 33.48 14.48 0.00 3.69
99 100 4.681978 AGAAGACGGTGCCGCCAC 62.682 66.667 10.87 3.02 44.19 5.01
100 101 4.373116 GAGAAGACGGTGCCGCCA 62.373 66.667 10.87 0.00 44.19 5.69
103 104 4.796231 CCGGAGAAGACGGTGCCG 62.796 72.222 9.29 9.29 46.03 5.69
109 110 1.519455 GTCATGGCCGGAGAAGACG 60.519 63.158 5.05 0.00 0.00 4.18
110 111 1.153349 GGTCATGGCCGGAGAAGAC 60.153 63.158 5.05 7.35 0.00 3.01
111 112 3.309582 GGTCATGGCCGGAGAAGA 58.690 61.111 5.05 0.00 0.00 2.87
120 121 2.464459 CGAAAGAGGCGGTCATGGC 61.464 63.158 0.00 0.00 0.00 4.40
121 122 1.079127 ACGAAAGAGGCGGTCATGG 60.079 57.895 0.00 0.00 0.00 3.66
122 123 0.108615 AGACGAAAGAGGCGGTCATG 60.109 55.000 0.00 0.00 0.00 3.07
123 124 0.173708 GAGACGAAAGAGGCGGTCAT 59.826 55.000 0.00 0.00 0.00 3.06
124 125 1.176619 TGAGACGAAAGAGGCGGTCA 61.177 55.000 0.00 0.00 0.00 4.02
126 127 0.108615 CATGAGACGAAAGAGGCGGT 60.109 55.000 0.00 0.00 0.00 5.68
127 128 0.807667 CCATGAGACGAAAGAGGCGG 60.808 60.000 0.00 0.00 0.00 6.13
128 129 0.173481 TCCATGAGACGAAAGAGGCG 59.827 55.000 0.00 0.00 0.00 5.52
129 130 1.933247 CTCCATGAGACGAAAGAGGC 58.067 55.000 0.00 0.00 0.00 4.70
130 131 1.480137 AGCTCCATGAGACGAAAGAGG 59.520 52.381 0.00 0.00 0.00 3.69
131 132 2.794282 CGAGCTCCATGAGACGAAAGAG 60.794 54.545 8.47 0.00 34.84 2.85
132 133 1.133216 CGAGCTCCATGAGACGAAAGA 59.867 52.381 8.47 0.00 34.84 2.52
133 134 1.133216 TCGAGCTCCATGAGACGAAAG 59.867 52.381 8.47 0.00 37.20 2.62
135 136 1.335182 GATCGAGCTCCATGAGACGAA 59.665 52.381 8.47 3.55 40.61 3.85
136 137 0.947960 GATCGAGCTCCATGAGACGA 59.052 55.000 8.47 13.03 41.08 4.20
146 147 2.642700 GAGGCGGAGATCGAGCTC 59.357 66.667 22.26 22.26 42.43 4.09
147 148 3.283684 CGAGGCGGAGATCGAGCT 61.284 66.667 1.00 1.00 39.96 4.09
161 162 3.382832 ACCAAGGGTCTCCGCGAG 61.383 66.667 8.23 3.02 38.33 5.03
164 165 1.450312 CATCACCAAGGGTCTCCGC 60.450 63.158 0.00 0.00 38.33 5.54
165 166 1.221840 CCATCACCAAGGGTCTCCG 59.778 63.158 0.00 0.00 38.33 4.63
167 168 2.558380 GGCCCATCACCAAGGGTCTC 62.558 65.000 0.00 0.00 46.34 3.36
168 169 2.616458 GGCCCATCACCAAGGGTCT 61.616 63.158 0.00 0.00 46.34 3.85
174 175 2.045280 CGTTTTGGCCCATCACCAA 58.955 52.632 0.00 0.00 45.37 3.67
175 176 2.569354 GCGTTTTGGCCCATCACCA 61.569 57.895 0.00 0.00 34.65 4.17
176 177 2.261361 GCGTTTTGGCCCATCACC 59.739 61.111 0.00 0.00 0.00 4.02
185 186 2.045340 ATCGGGGAGGCGTTTTGG 60.045 61.111 0.00 0.00 0.00 3.28
186 187 1.078426 AGATCGGGGAGGCGTTTTG 60.078 57.895 0.00 0.00 0.00 2.44
187 188 1.221021 GAGATCGGGGAGGCGTTTT 59.779 57.895 0.00 0.00 0.00 2.43
189 190 3.528370 CGAGATCGGGGAGGCGTT 61.528 66.667 0.00 0.00 35.37 4.84
190 191 4.816984 ACGAGATCGGGGAGGCGT 62.817 66.667 7.22 0.00 44.95 5.68
191 192 3.967335 GACGAGATCGGGGAGGCG 61.967 72.222 7.22 0.00 44.95 5.52
201 202 0.965866 TGGAGCCAGTTCGACGAGAT 60.966 55.000 0.00 0.00 0.00 2.75
202 203 1.602605 TGGAGCCAGTTCGACGAGA 60.603 57.895 0.00 0.00 0.00 4.04
203 204 1.444553 GTGGAGCCAGTTCGACGAG 60.445 63.158 0.00 0.00 0.00 4.18
204 205 2.649034 GTGGAGCCAGTTCGACGA 59.351 61.111 0.00 0.00 0.00 4.20
230 231 4.803426 CTCTCCCACAGCGGCGAC 62.803 72.222 12.98 1.23 0.00 5.19
236 237 4.459089 GACGCCCTCTCCCACAGC 62.459 72.222 0.00 0.00 0.00 4.40
250 251 4.862092 ATGCCAGAGAGCGCGACG 62.862 66.667 12.10 0.00 34.65 5.12
251 252 3.260483 CATGCCAGAGAGCGCGAC 61.260 66.667 12.10 2.22 34.65 5.19
254 255 2.894565 GATGCATGCCAGAGAGCGC 61.895 63.158 16.68 0.00 34.65 5.92
255 256 2.595878 CGATGCATGCCAGAGAGCG 61.596 63.158 16.68 6.74 34.65 5.03
256 257 1.222766 CTCGATGCATGCCAGAGAGC 61.223 60.000 22.01 4.51 0.00 4.09
257 258 1.222766 GCTCGATGCATGCCAGAGAG 61.223 60.000 27.38 23.17 42.31 3.20
258 259 1.227468 GCTCGATGCATGCCAGAGA 60.227 57.895 27.38 16.36 42.31 3.10
260 261 2.586914 CGCTCGATGCATGCCAGA 60.587 61.111 16.68 10.74 43.06 3.86
264 265 3.657059 ATGGCGCTCGATGCATGC 61.657 61.111 11.82 11.82 43.06 4.06
265 266 2.251371 CATGGCGCTCGATGCATG 59.749 61.111 2.46 7.56 43.06 4.06
266 267 2.976350 CCATGGCGCTCGATGCAT 60.976 61.111 7.64 0.00 43.06 3.96
277 278 4.409218 CACACACGCAGCCATGGC 62.409 66.667 30.12 30.12 42.33 4.40
278 279 2.979676 ACACACACGCAGCCATGG 60.980 61.111 7.63 7.63 0.00 3.66
279 280 2.253154 CACACACACGCAGCCATG 59.747 61.111 0.00 0.00 0.00 3.66
280 281 3.663176 GCACACACACGCAGCCAT 61.663 61.111 0.00 0.00 0.00 4.40
283 284 4.943591 CACGCACACACACGCAGC 62.944 66.667 0.00 0.00 0.00 5.25
284 285 3.214306 CTCACGCACACACACGCAG 62.214 63.158 0.00 0.00 0.00 5.18
288 289 0.315059 CGTTTCTCACGCACACACAC 60.315 55.000 0.00 0.00 43.37 3.82
299 300 3.119602 CCTACTTCGGTGATCGTTTCTCA 60.120 47.826 0.00 0.00 40.32 3.27
301 302 2.165845 CCCTACTTCGGTGATCGTTTCT 59.834 50.000 0.00 0.00 40.32 2.52
302 303 2.537401 CCCTACTTCGGTGATCGTTTC 58.463 52.381 0.00 0.00 40.32 2.78
303 304 1.206371 CCCCTACTTCGGTGATCGTTT 59.794 52.381 0.00 0.00 40.32 3.60
304 305 0.822164 CCCCTACTTCGGTGATCGTT 59.178 55.000 0.00 0.00 40.32 3.85
305 306 1.041447 CCCCCTACTTCGGTGATCGT 61.041 60.000 0.00 0.00 40.32 3.73
307 308 1.201424 AACCCCCTACTTCGGTGATC 58.799 55.000 0.00 0.00 0.00 2.92
309 310 0.688487 CAAACCCCCTACTTCGGTGA 59.312 55.000 0.00 0.00 0.00 4.02
310 311 0.958876 GCAAACCCCCTACTTCGGTG 60.959 60.000 0.00 0.00 0.00 4.94
311 312 1.377612 GCAAACCCCCTACTTCGGT 59.622 57.895 0.00 0.00 0.00 4.69
313 314 1.743995 CGGCAAACCCCCTACTTCG 60.744 63.158 0.00 0.00 0.00 3.79
314 315 2.044555 GCGGCAAACCCCCTACTTC 61.045 63.158 0.00 0.00 0.00 3.01
315 316 2.035155 GCGGCAAACCCCCTACTT 59.965 61.111 0.00 0.00 0.00 2.24
316 317 4.043100 GGCGGCAAACCCCCTACT 62.043 66.667 3.07 0.00 0.00 2.57
317 318 3.871850 TTGGCGGCAAACCCCCTAC 62.872 63.158 23.43 0.00 0.00 3.18
318 319 3.148184 TTTGGCGGCAAACCCCCTA 62.148 57.895 30.73 9.49 0.00 3.53
319 320 4.548513 TTTGGCGGCAAACCCCCT 62.549 61.111 30.73 0.00 0.00 4.79
320 321 4.002506 CTTTGGCGGCAAACCCCC 62.003 66.667 30.73 0.00 0.00 5.40
321 322 3.230990 ACTTTGGCGGCAAACCCC 61.231 61.111 30.73 0.00 0.00 4.95
322 323 2.028925 CACTTTGGCGGCAAACCC 59.971 61.111 30.73 0.00 0.00 4.11
323 324 1.815817 ATCCACTTTGGCGGCAAACC 61.816 55.000 30.73 0.36 37.47 3.27
324 325 0.667184 CATCCACTTTGGCGGCAAAC 60.667 55.000 30.73 0.00 37.47 2.93
325 326 1.664873 CATCCACTTTGGCGGCAAA 59.335 52.632 31.78 31.78 37.47 3.68
326 327 2.274645 CCATCCACTTTGGCGGCAA 61.275 57.895 21.79 21.79 37.47 4.52
328 329 1.322538 AATCCATCCACTTTGGCGGC 61.323 55.000 0.00 0.00 37.47 6.53
330 331 1.736696 GCAAATCCATCCACTTTGGCG 60.737 52.381 0.00 0.00 37.47 5.69
331 332 1.736696 CGCAAATCCATCCACTTTGGC 60.737 52.381 0.00 0.00 37.47 4.52
332 333 1.818060 TCGCAAATCCATCCACTTTGG 59.182 47.619 0.00 0.00 39.43 3.28
333 334 2.728846 CGTCGCAAATCCATCCACTTTG 60.729 50.000 0.00 0.00 33.93 2.77
334 335 1.468520 CGTCGCAAATCCATCCACTTT 59.531 47.619 0.00 0.00 0.00 2.66
335 336 1.086696 CGTCGCAAATCCATCCACTT 58.913 50.000 0.00 0.00 0.00 3.16
336 337 0.744414 CCGTCGCAAATCCATCCACT 60.744 55.000 0.00 0.00 0.00 4.00
337 338 0.742990 TCCGTCGCAAATCCATCCAC 60.743 55.000 0.00 0.00 0.00 4.02
339 340 1.160329 CCTCCGTCGCAAATCCATCC 61.160 60.000 0.00 0.00 0.00 3.51
340 341 1.776034 GCCTCCGTCGCAAATCCATC 61.776 60.000 0.00 0.00 0.00 3.51
341 342 1.819632 GCCTCCGTCGCAAATCCAT 60.820 57.895 0.00 0.00 0.00 3.41
342 343 2.435938 GCCTCCGTCGCAAATCCA 60.436 61.111 0.00 0.00 0.00 3.41
343 344 3.564027 CGCCTCCGTCGCAAATCC 61.564 66.667 0.00 0.00 0.00 3.01
354 355 3.739613 ATTTCCCCACCCGCCTCC 61.740 66.667 0.00 0.00 0.00 4.30
362 363 0.537371 CCTATCCGGCATTTCCCCAC 60.537 60.000 0.00 0.00 0.00 4.61
363 364 0.696143 TCCTATCCGGCATTTCCCCA 60.696 55.000 0.00 0.00 0.00 4.96
364 365 0.476771 TTCCTATCCGGCATTTCCCC 59.523 55.000 0.00 0.00 0.00 4.81
365 366 2.437413 GATTCCTATCCGGCATTTCCC 58.563 52.381 0.00 0.00 0.00 3.97
377 378 7.092219 GGATAGAGGCCAATTTAGGATTCCTAT 60.092 40.741 13.22 0.00 35.87 2.57
378 379 6.215636 GGATAGAGGCCAATTTAGGATTCCTA 59.784 42.308 5.01 8.42 34.61 2.94
379 380 5.014649 GGATAGAGGCCAATTTAGGATTCCT 59.985 44.000 10.72 10.72 37.71 3.36
380 381 5.257262 GGATAGAGGCCAATTTAGGATTCC 58.743 45.833 5.01 0.00 0.00 3.01
381 382 5.257262 GGGATAGAGGCCAATTTAGGATTC 58.743 45.833 5.01 0.00 0.00 2.52
382 383 4.263506 CGGGATAGAGGCCAATTTAGGATT 60.264 45.833 5.01 0.00 0.00 3.01
385 386 2.372172 ACGGGATAGAGGCCAATTTAGG 59.628 50.000 5.01 0.00 0.00 2.69
386 387 3.771577 ACGGGATAGAGGCCAATTTAG 57.228 47.619 5.01 0.00 0.00 1.85
387 388 5.633655 TTTACGGGATAGAGGCCAATTTA 57.366 39.130 5.01 0.00 0.00 1.40
388 389 4.513406 TTTACGGGATAGAGGCCAATTT 57.487 40.909 5.01 0.00 0.00 1.82
389 390 4.724279 ATTTACGGGATAGAGGCCAATT 57.276 40.909 5.01 0.00 0.00 2.32
390 391 6.672657 ACTATATTTACGGGATAGAGGCCAAT 59.327 38.462 5.01 0.00 0.00 3.16
391 392 6.021030 ACTATATTTACGGGATAGAGGCCAA 58.979 40.000 5.01 0.00 0.00 4.52
392 393 5.421056 CACTATATTTACGGGATAGAGGCCA 59.579 44.000 5.01 0.00 0.00 5.36
393 394 5.163437 CCACTATATTTACGGGATAGAGGCC 60.163 48.000 0.00 0.00 30.47 5.19
394 395 5.421374 ACCACTATATTTACGGGATAGAGGC 59.579 44.000 4.99 0.00 37.40 4.70
395 396 6.127423 CCACCACTATATTTACGGGATAGAGG 60.127 46.154 0.00 0.00 38.88 3.69
396 397 6.662234 TCCACCACTATATTTACGGGATAGAG 59.338 42.308 0.00 0.00 0.00 2.43
397 398 6.554784 TCCACCACTATATTTACGGGATAGA 58.445 40.000 0.00 0.00 0.00 1.98
398 399 6.436532 ACTCCACCACTATATTTACGGGATAG 59.563 42.308 0.00 0.00 0.00 2.08
399 400 6.317312 ACTCCACCACTATATTTACGGGATA 58.683 40.000 0.00 0.00 0.00 2.59
400 401 5.152934 ACTCCACCACTATATTTACGGGAT 58.847 41.667 0.00 0.00 0.00 3.85
401 402 4.549668 ACTCCACCACTATATTTACGGGA 58.450 43.478 0.00 0.00 0.00 5.14
403 404 5.054477 CCAACTCCACCACTATATTTACGG 58.946 45.833 0.00 0.00 0.00 4.02
405 406 6.243216 TCCCAACTCCACCACTATATTTAC 57.757 41.667 0.00 0.00 0.00 2.01
406 407 7.460214 AATCCCAACTCCACCACTATATTTA 57.540 36.000 0.00 0.00 0.00 1.40
407 408 5.994416 ATCCCAACTCCACCACTATATTT 57.006 39.130 0.00 0.00 0.00 1.40
408 409 5.994416 AATCCCAACTCCACCACTATATT 57.006 39.130 0.00 0.00 0.00 1.28
409 410 5.994416 AAATCCCAACTCCACCACTATAT 57.006 39.130 0.00 0.00 0.00 0.86
410 411 5.789574 AAAATCCCAACTCCACCACTATA 57.210 39.130 0.00 0.00 0.00 1.31
411 412 4.675063 AAAATCCCAACTCCACCACTAT 57.325 40.909 0.00 0.00 0.00 2.12
412 413 4.563993 CGTAAAATCCCAACTCCACCACTA 60.564 45.833 0.00 0.00 0.00 2.74
413 414 3.763057 GTAAAATCCCAACTCCACCACT 58.237 45.455 0.00 0.00 0.00 4.00
415 416 2.553466 CCGTAAAATCCCAACTCCACCA 60.553 50.000 0.00 0.00 0.00 4.17
416 417 2.089201 CCGTAAAATCCCAACTCCACC 58.911 52.381 0.00 0.00 0.00 4.61
417 418 2.089201 CCCGTAAAATCCCAACTCCAC 58.911 52.381 0.00 0.00 0.00 4.02
418 419 1.614850 GCCCGTAAAATCCCAACTCCA 60.615 52.381 0.00 0.00 0.00 3.86
419 420 1.100510 GCCCGTAAAATCCCAACTCC 58.899 55.000 0.00 0.00 0.00 3.85
420 421 1.100510 GGCCCGTAAAATCCCAACTC 58.899 55.000 0.00 0.00 0.00 3.01
421 422 0.678684 CGGCCCGTAAAATCCCAACT 60.679 55.000 0.00 0.00 0.00 3.16
423 424 2.047443 GCGGCCCGTAAAATCCCAA 61.047 57.895 4.45 0.00 0.00 4.12
424 425 2.438795 GCGGCCCGTAAAATCCCA 60.439 61.111 4.45 0.00 0.00 4.37
425 426 3.214123 GGCGGCCCGTAAAATCCC 61.214 66.667 8.12 0.00 0.00 3.85
426 427 2.438795 TGGCGGCCCGTAAAATCC 60.439 61.111 17.97 0.00 0.00 3.01
427 428 0.462403 TACTGGCGGCCCGTAAAATC 60.462 55.000 19.26 0.00 0.00 2.17
428 429 0.181824 ATACTGGCGGCCCGTAAAAT 59.818 50.000 24.09 9.11 0.00 1.82
430 431 1.050204 ATATACTGGCGGCCCGTAAA 58.950 50.000 24.09 7.85 0.00 2.01
431 432 1.050204 AATATACTGGCGGCCCGTAA 58.950 50.000 24.09 14.88 0.00 3.18
432 433 1.050204 AAATATACTGGCGGCCCGTA 58.950 50.000 22.84 22.84 0.00 4.02
433 434 0.181824 AAAATATACTGGCGGCCCGT 59.818 50.000 20.00 20.00 0.00 5.28
434 435 1.314730 AAAAATATACTGGCGGCCCG 58.685 50.000 17.97 13.36 0.00 6.13
451 452 1.114119 AAAAGCCCGGCCCGTAAAAA 61.114 50.000 5.55 0.00 0.00 1.94
453 454 1.531128 AAAAAGCCCGGCCCGTAAA 60.531 52.632 5.55 0.00 0.00 2.01
454 455 2.115695 AAAAAGCCCGGCCCGTAA 59.884 55.556 5.55 0.00 0.00 3.18
468 469 4.537135 ACTCGAGCAGATCCAGTAAAAA 57.463 40.909 13.61 0.00 0.00 1.94
469 470 5.654603 TTACTCGAGCAGATCCAGTAAAA 57.345 39.130 13.61 0.00 0.00 1.52
470 471 5.854010 ATTACTCGAGCAGATCCAGTAAA 57.146 39.130 13.61 0.00 0.00 2.01
471 472 5.854010 AATTACTCGAGCAGATCCAGTAA 57.146 39.130 13.61 8.14 0.00 2.24
472 473 5.854010 AAATTACTCGAGCAGATCCAGTA 57.146 39.130 13.61 0.00 0.00 2.74
493 494 7.230913 TGACCATTTTACAAGATCCGGTAAAAA 59.769 33.333 24.39 12.75 46.44 1.94
495 496 6.239396 TGACCATTTTACAAGATCCGGTAAA 58.761 36.000 12.89 12.89 37.61 2.01
497 498 5.188163 TCTGACCATTTTACAAGATCCGGTA 59.812 40.000 0.00 0.00 0.00 4.02
498 499 4.019681 TCTGACCATTTTACAAGATCCGGT 60.020 41.667 0.00 0.00 0.00 5.28
499 500 4.513442 TCTGACCATTTTACAAGATCCGG 58.487 43.478 0.00 0.00 0.00 5.14
500 501 6.683974 ATTCTGACCATTTTACAAGATCCG 57.316 37.500 0.00 0.00 0.00 4.18
506 507 8.691797 GCCCTTATAATTCTGACCATTTTACAA 58.308 33.333 0.00 0.00 0.00 2.41
507 508 7.286775 GGCCCTTATAATTCTGACCATTTTACA 59.713 37.037 0.00 0.00 0.00 2.41
509 510 7.358263 TGGCCCTTATAATTCTGACCATTTTA 58.642 34.615 0.00 0.00 0.00 1.52
510 511 6.201591 TGGCCCTTATAATTCTGACCATTTT 58.798 36.000 0.00 0.00 0.00 1.82
511 512 5.776358 TGGCCCTTATAATTCTGACCATTT 58.224 37.500 0.00 0.00 0.00 2.32
513 514 4.751028 GCTGGCCCTTATAATTCTGACCAT 60.751 45.833 0.00 0.00 0.00 3.55
514 515 3.435026 GCTGGCCCTTATAATTCTGACCA 60.435 47.826 0.00 0.00 0.00 4.02
515 516 3.149981 GCTGGCCCTTATAATTCTGACC 58.850 50.000 0.00 0.00 0.00 4.02
516 517 2.808543 CGCTGGCCCTTATAATTCTGAC 59.191 50.000 0.00 0.00 0.00 3.51
517 518 2.703536 TCGCTGGCCCTTATAATTCTGA 59.296 45.455 0.00 0.00 0.00 3.27
518 519 3.070018 CTCGCTGGCCCTTATAATTCTG 58.930 50.000 0.00 0.00 0.00 3.02
519 520 2.039084 CCTCGCTGGCCCTTATAATTCT 59.961 50.000 0.00 0.00 0.00 2.40
521 522 1.774856 ACCTCGCTGGCCCTTATAATT 59.225 47.619 0.00 0.00 40.22 1.40
522 523 1.435256 ACCTCGCTGGCCCTTATAAT 58.565 50.000 0.00 0.00 40.22 1.28
523 524 1.209621 AACCTCGCTGGCCCTTATAA 58.790 50.000 0.00 0.00 40.22 0.98
524 525 1.209621 AAACCTCGCTGGCCCTTATA 58.790 50.000 0.00 0.00 40.22 0.98
526 527 0.985760 TAAAACCTCGCTGGCCCTTA 59.014 50.000 0.00 0.00 40.22 2.69
528 529 1.002502 GTAAAACCTCGCTGGCCCT 60.003 57.895 0.00 0.00 40.22 5.19
530 531 2.032680 TATGTAAAACCTCGCTGGCC 57.967 50.000 0.00 0.00 40.22 5.36
531 532 3.877508 AGATTATGTAAAACCTCGCTGGC 59.122 43.478 0.00 0.00 40.22 4.85
533 534 4.572389 AGCAGATTATGTAAAACCTCGCTG 59.428 41.667 0.00 0.00 0.00 5.18
534 535 4.770795 AGCAGATTATGTAAAACCTCGCT 58.229 39.130 0.00 0.00 0.00 4.93
535 536 5.983720 TCTAGCAGATTATGTAAAACCTCGC 59.016 40.000 0.00 0.00 0.00 5.03
536 537 6.978659 TGTCTAGCAGATTATGTAAAACCTCG 59.021 38.462 0.00 0.00 0.00 4.63
537 538 8.768955 CATGTCTAGCAGATTATGTAAAACCTC 58.231 37.037 0.00 0.00 0.00 3.85
538 539 7.227512 GCATGTCTAGCAGATTATGTAAAACCT 59.772 37.037 0.00 0.00 29.78 3.50
539 540 7.227512 AGCATGTCTAGCAGATTATGTAAAACC 59.772 37.037 0.00 0.00 29.78 3.27
540 541 8.147642 AGCATGTCTAGCAGATTATGTAAAAC 57.852 34.615 0.00 0.00 29.78 2.43
541 542 8.206867 AGAGCATGTCTAGCAGATTATGTAAAA 58.793 33.333 0.00 0.00 31.71 1.52
543 544 7.295322 AGAGCATGTCTAGCAGATTATGTAA 57.705 36.000 0.00 0.00 31.71 2.41
544 545 6.907853 AGAGCATGTCTAGCAGATTATGTA 57.092 37.500 0.00 0.00 31.71 2.29
545 546 5.804944 AGAGCATGTCTAGCAGATTATGT 57.195 39.130 0.00 0.00 31.71 2.29
546 547 7.600960 TCTAAGAGCATGTCTAGCAGATTATG 58.399 38.462 0.00 0.00 32.65 1.90
547 548 7.773489 TCTAAGAGCATGTCTAGCAGATTAT 57.227 36.000 0.00 0.00 32.65 1.28
548 549 7.503902 TCTTCTAAGAGCATGTCTAGCAGATTA 59.496 37.037 0.00 0.00 32.65 1.75
549 550 6.323482 TCTTCTAAGAGCATGTCTAGCAGATT 59.677 38.462 0.00 0.00 32.65 2.40
550 551 5.832595 TCTTCTAAGAGCATGTCTAGCAGAT 59.167 40.000 0.00 0.00 32.65 2.90
551 552 5.196695 TCTTCTAAGAGCATGTCTAGCAGA 58.803 41.667 0.00 0.00 32.65 4.26
552 553 5.512753 TCTTCTAAGAGCATGTCTAGCAG 57.487 43.478 0.00 0.00 32.65 4.24
553 554 5.512753 CTCTTCTAAGAGCATGTCTAGCA 57.487 43.478 6.79 0.00 45.26 3.49
563 564 8.926614 AAAGCCCCACTTTCTCTTCTAAGAGC 62.927 46.154 13.77 1.67 45.78 4.09
564 565 5.513962 AAAGCCCCACTTTCTCTTCTAAGAG 60.514 44.000 12.61 12.61 45.78 2.85
565 566 3.521727 AGCCCCACTTTCTCTTCTAAGA 58.478 45.455 0.00 0.00 0.00 2.10
587 588 4.217550 CCCCACTTTCTCTATTCGCAAAAA 59.782 41.667 0.00 0.00 0.00 1.94
588 589 3.756434 CCCCACTTTCTCTATTCGCAAAA 59.244 43.478 0.00 0.00 0.00 2.44
589 590 3.343617 CCCCACTTTCTCTATTCGCAAA 58.656 45.455 0.00 0.00 0.00 3.68
590 591 2.939640 GCCCCACTTTCTCTATTCGCAA 60.940 50.000 0.00 0.00 0.00 4.85
591 592 1.406887 GCCCCACTTTCTCTATTCGCA 60.407 52.381 0.00 0.00 0.00 5.10
592 593 1.134371 AGCCCCACTTTCTCTATTCGC 60.134 52.381 0.00 0.00 0.00 4.70
593 594 2.990066 AGCCCCACTTTCTCTATTCG 57.010 50.000 0.00 0.00 0.00 3.34
604 605 4.584743 CACTTTTCTTTAGAAAGCCCCACT 59.415 41.667 5.20 0.00 43.90 4.00
606 607 3.895041 CCACTTTTCTTTAGAAAGCCCCA 59.105 43.478 5.20 0.00 43.90 4.96
607 608 3.258372 CCCACTTTTCTTTAGAAAGCCCC 59.742 47.826 5.20 0.00 43.90 5.80
608 609 3.895656 ACCCACTTTTCTTTAGAAAGCCC 59.104 43.478 5.20 0.00 43.90 5.19
609 610 4.583073 TCACCCACTTTTCTTTAGAAAGCC 59.417 41.667 5.20 0.00 43.90 4.35
610 611 5.763088 CTCACCCACTTTTCTTTAGAAAGC 58.237 41.667 5.20 0.00 43.90 3.51
611 612 5.299279 TGCTCACCCACTTTTCTTTAGAAAG 59.701 40.000 5.20 0.00 43.90 2.62
612 613 5.197451 TGCTCACCCACTTTTCTTTAGAAA 58.803 37.500 0.89 0.89 41.77 2.52
613 614 4.787551 TGCTCACCCACTTTTCTTTAGAA 58.212 39.130 0.00 0.00 0.00 2.10
614 615 4.431416 TGCTCACCCACTTTTCTTTAGA 57.569 40.909 0.00 0.00 0.00 2.10
615 616 5.514274 TTTGCTCACCCACTTTTCTTTAG 57.486 39.130 0.00 0.00 0.00 1.85
616 617 5.654650 TCTTTTGCTCACCCACTTTTCTTTA 59.345 36.000 0.00 0.00 0.00 1.85
617 618 4.466015 TCTTTTGCTCACCCACTTTTCTTT 59.534 37.500 0.00 0.00 0.00 2.52
632 633 7.279750 TCCCGTTTTAGTATTTTCTTTTGCT 57.720 32.000 0.00 0.00 0.00 3.91
651 652 8.291740 GCAACGGTATAAAAATAATAATCCCGT 58.708 33.333 0.00 0.00 45.88 5.28
652 653 7.479291 CGCAACGGTATAAAAATAATAATCCCG 59.521 37.037 0.00 0.00 37.73 5.14
653 654 8.505625 TCGCAACGGTATAAAAATAATAATCCC 58.494 33.333 0.00 0.00 0.00 3.85
654 655 9.537848 CTCGCAACGGTATAAAAATAATAATCC 57.462 33.333 0.00 0.00 0.00 3.01
657 658 9.531942 TCTCTCGCAACGGTATAAAAATAATAA 57.468 29.630 0.00 0.00 0.00 1.40
658 659 9.701098 ATCTCTCGCAACGGTATAAAAATAATA 57.299 29.630 0.00 0.00 0.00 0.98
659 660 8.603242 ATCTCTCGCAACGGTATAAAAATAAT 57.397 30.769 0.00 0.00 0.00 1.28
667 668 6.016527 ACATTAGAATCTCTCGCAACGGTATA 60.017 38.462 0.00 0.00 0.00 1.47
717 718 3.830755 AGACAGGCAGCTGATTGATTTTT 59.169 39.130 20.43 0.00 0.00 1.94
718 719 3.428532 AGACAGGCAGCTGATTGATTTT 58.571 40.909 20.43 0.00 0.00 1.82
719 720 3.083122 AGACAGGCAGCTGATTGATTT 57.917 42.857 20.43 0.00 0.00 2.17
720 721 2.753452 CAAGACAGGCAGCTGATTGATT 59.247 45.455 20.43 11.54 31.41 2.57
721 722 2.366533 CAAGACAGGCAGCTGATTGAT 58.633 47.619 20.43 6.27 31.41 2.57
722 723 1.817357 CAAGACAGGCAGCTGATTGA 58.183 50.000 20.43 0.00 31.41 2.57
723 724 0.170561 GCAAGACAGGCAGCTGATTG 59.829 55.000 20.43 16.64 0.00 2.67
725 726 1.378250 GGCAAGACAGGCAGCTGAT 60.378 57.895 20.43 1.05 0.00 2.90
726 727 2.033141 GGCAAGACAGGCAGCTGA 59.967 61.111 20.43 0.00 0.00 4.26
727 728 3.429141 CGGCAAGACAGGCAGCTG 61.429 66.667 10.11 10.11 0.00 4.24
730 731 3.123620 GAGCGGCAAGACAGGCAG 61.124 66.667 1.45 0.00 0.00 4.85
733 734 3.114616 CACGAGCGGCAAGACAGG 61.115 66.667 1.45 0.00 0.00 4.00
744 745 1.086696 TGCTCCAATTTAGCACGAGC 58.913 50.000 7.93 0.00 44.78 5.03
757 758 5.482526 TGATTAGTAGTTAGTGGTTGCTCCA 59.517 40.000 0.00 0.00 45.01 3.86
760 761 7.425224 AGATGATTAGTAGTTAGTGGTTGCT 57.575 36.000 0.00 0.00 0.00 3.91
761 762 8.494016 AAAGATGATTAGTAGTTAGTGGTTGC 57.506 34.615 0.00 0.00 0.00 4.17
793 3839 5.698832 TGAAGTCGGCAATTAAGTTCATTG 58.301 37.500 5.55 5.55 35.12 2.82
794 3840 5.957842 TGAAGTCGGCAATTAAGTTCATT 57.042 34.783 0.00 0.00 29.67 2.57
795 3841 5.957842 TTGAAGTCGGCAATTAAGTTCAT 57.042 34.783 0.00 0.00 33.60 2.57
796 3842 5.759506 TTTGAAGTCGGCAATTAAGTTCA 57.240 34.783 0.00 0.00 32.09 3.18
807 3854 3.751698 AGATTACTGGTTTTGAAGTCGGC 59.248 43.478 0.00 0.00 0.00 5.54
811 3858 6.043243 TGGAGAGAGATTACTGGTTTTGAAGT 59.957 38.462 0.00 0.00 0.00 3.01
820 3867 4.054671 GCGAATTGGAGAGAGATTACTGG 58.945 47.826 0.00 0.00 0.00 4.00
823 3870 4.060038 TGGCGAATTGGAGAGAGATTAC 57.940 45.455 0.00 0.00 0.00 1.89
841 3888 1.987770 GCAATATGCATGCGTAATGGC 59.012 47.619 27.99 23.22 44.26 4.40
898 3945 1.069935 GGAGTAGGGAGGCGAATGC 59.930 63.158 0.00 0.00 41.71 3.56
940 3999 3.799753 CGCTTGCTAATGGCGTCT 58.200 55.556 0.00 0.00 45.43 4.18
984 4045 1.059369 CATCGCGCCAAACTCTTCG 59.941 57.895 0.00 0.00 0.00 3.79
1335 4417 0.388659 TGCTGCATTTGAACCACACC 59.611 50.000 0.00 0.00 0.00 4.16
1548 4654 0.456312 GAGCGTCGTCGAAGGTGAAT 60.456 55.000 17.35 0.00 39.71 2.57
1704 4821 3.195698 GCGCCGATCTGGTTCACC 61.196 66.667 0.00 0.00 41.21 4.02
1779 4896 1.134670 CCGAAACTGAGGATGGAGGAC 60.135 57.143 0.00 0.00 0.00 3.85
2267 5418 3.479269 CGAAGCCGACGTGGAAGC 61.479 66.667 0.00 0.00 42.00 3.86
2353 5504 3.518634 AGCTAGCTACAAAGAGACTGC 57.481 47.619 17.69 0.00 0.00 4.40
2438 5596 0.453282 CAACGCTGAAATCGCTGTGG 60.453 55.000 0.00 0.00 0.00 4.17
2462 5625 7.595130 TGGAGATGAAATTATACGTTCGATCAG 59.405 37.037 0.00 0.00 0.00 2.90
2463 5626 7.381408 GTGGAGATGAAATTATACGTTCGATCA 59.619 37.037 0.00 0.00 0.00 2.92
2464 5627 7.409449 CGTGGAGATGAAATTATACGTTCGATC 60.409 40.741 0.00 0.00 0.00 3.69
2466 5629 5.684184 CGTGGAGATGAAATTATACGTTCGA 59.316 40.000 0.00 0.00 0.00 3.71
2467 5630 5.457799 ACGTGGAGATGAAATTATACGTTCG 59.542 40.000 0.00 0.00 40.11 3.95
2468 5631 6.696148 AGACGTGGAGATGAAATTATACGTTC 59.304 38.462 0.00 0.00 42.63 3.95
2471 5634 5.339875 CGAGACGTGGAGATGAAATTATACG 59.660 44.000 0.00 0.00 36.48 3.06
2472 5635 6.436261 TCGAGACGTGGAGATGAAATTATAC 58.564 40.000 0.00 0.00 0.00 1.47
2474 5637 5.067936 ACTCGAGACGTGGAGATGAAATTAT 59.932 40.000 21.68 0.00 32.96 1.28
2515 5678 3.380471 TCAGTATTGGGGTGAAATGGG 57.620 47.619 0.00 0.00 0.00 4.00
2561 5729 3.192844 AGTGGAGTGATATGTTCGACGTT 59.807 43.478 0.00 0.00 0.00 3.99
2571 5739 3.133003 CCGACCTTCAAGTGGAGTGATAT 59.867 47.826 0.00 0.00 0.00 1.63
2572 5740 2.496070 CCGACCTTCAAGTGGAGTGATA 59.504 50.000 0.00 0.00 0.00 2.15
2576 5744 1.070289 GTTCCGACCTTCAAGTGGAGT 59.930 52.381 0.00 0.00 0.00 3.85
2577 5745 1.797025 GTTCCGACCTTCAAGTGGAG 58.203 55.000 0.00 0.00 0.00 3.86
2592 5760 0.388907 TCCCATCGTTCGTTCGTTCC 60.389 55.000 2.67 0.00 0.00 3.62
2601 5769 2.674796 ACTAGTTGCTCCCATCGTTC 57.325 50.000 0.00 0.00 0.00 3.95
2799 7275 3.813166 TGGTCAAAAAGCTAAGAAGGACG 59.187 43.478 0.00 0.00 0.00 4.79
2901 8443 1.745320 AAGAGTCACGACCGTGCCTT 61.745 55.000 16.76 15.13 45.04 4.35
2918 8460 2.446282 ACGCGTTTGTGCTTTAACAAG 58.554 42.857 5.58 0.00 40.93 3.16
2951 8496 1.669211 CCGTGACTCTCCCGAAAGAAC 60.669 57.143 0.00 0.00 0.00 3.01
2960 8505 0.318762 AAGCAGAACCGTGACTCTCC 59.681 55.000 0.00 0.00 0.00 3.71
2992 8753 0.378962 CTTTCGCGAAACCACAACCA 59.621 50.000 29.22 7.05 0.00 3.67
3000 8761 0.454452 GGCCATGACTTTCGCGAAAC 60.454 55.000 29.22 20.70 0.00 2.78
3073 9549 2.788786 CGCAAAAGCAAAATCGTGACTT 59.211 40.909 0.00 0.00 0.00 3.01
3169 9777 4.426416 TCGTGACTCTCGTGAAAGAAAAA 58.574 39.130 0.76 0.00 0.00 1.94
3170 9778 4.036567 TCGTGACTCTCGTGAAAGAAAA 57.963 40.909 0.76 0.00 0.00 2.29
3205 10332 0.521735 GAAATCACAACCGTGCCTCC 59.478 55.000 0.00 0.00 43.28 4.30
3238 10806 0.673644 CCTTTCCGAATGAGGCACGT 60.674 55.000 0.00 0.00 0.00 4.49
3284 10852 4.487019 GATGAAATAAACCGGGCGAAAAA 58.513 39.130 6.32 0.00 0.00 1.94
3289 10857 0.306533 CGGATGAAATAAACCGGGCG 59.693 55.000 6.32 0.00 41.41 6.13
3326 11129 6.350110 CCCATGTTGATAGGTTTTGACGAATT 60.350 38.462 0.00 0.00 0.00 2.17
3327 11130 5.125417 CCCATGTTGATAGGTTTTGACGAAT 59.875 40.000 0.00 0.00 0.00 3.34
3330 11133 4.006989 TCCCATGTTGATAGGTTTTGACG 58.993 43.478 0.00 0.00 0.00 4.35
3343 11146 6.088016 TCTTCAAAACAAGATCCCATGTTG 57.912 37.500 9.19 0.88 39.57 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.