Multiple sequence alignment - TraesCS3A01G095400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G095400 chr3A 100.000 5123 0 0 1 5123 60687059 60681937 0.000000e+00 9461.0
1 TraesCS3A01G095400 chr3A 95.652 184 8 0 4403 4586 746482565 746482382 3.880000e-76 296.0
2 TraesCS3A01G095400 chr3A 95.082 183 9 0 4403 4585 217786627 217786445 6.490000e-74 289.0
3 TraesCS3A01G095400 chr3D 89.193 4127 259 82 399 4402 48452968 48448906 0.000000e+00 4977.0
4 TraesCS3A01G095400 chr3D 88.296 675 51 15 1 652 48526125 48525456 0.000000e+00 784.0
5 TraesCS3A01G095400 chr3D 92.281 285 13 4 4632 4914 48448878 48448601 3.720000e-106 396.0
6 TraesCS3A01G095400 chr3B 91.392 1975 123 21 2461 4402 77005272 77003312 0.000000e+00 2662.0
7 TraesCS3A01G095400 chr3B 86.180 2149 124 66 392 2462 77007584 77005531 0.000000e+00 2163.0
8 TraesCS3A01G095400 chr3B 87.688 333 14 7 4586 4914 77003319 77003010 3.770000e-96 363.0
9 TraesCS3A01G095400 chr3B 77.626 219 34 5 4918 5123 808059454 808059670 9.010000e-23 119.0
10 TraesCS3A01G095400 chr5B 90.891 516 27 10 3899 4402 128610229 128609722 0.000000e+00 675.0
11 TraesCS3A01G095400 chr5B 90.244 287 18 6 4586 4862 128609729 128609443 2.910000e-97 366.0
12 TraesCS3A01G095400 chr6D 80.816 490 67 14 2997 3463 439918484 439917999 4.880000e-95 359.0
13 TraesCS3A01G095400 chr6D 83.117 154 22 4 3511 3664 439918001 439917852 2.490000e-28 137.0
14 TraesCS3A01G095400 chr6A 96.714 213 7 0 4911 5123 572516173 572516385 6.310000e-94 355.0
15 TraesCS3A01G095400 chr6A 95.213 188 8 1 4399 4585 39841053 39841240 3.880000e-76 296.0
16 TraesCS3A01G095400 chr6A 88.776 98 9 2 5026 5122 574705136 574705232 9.010000e-23 119.0
17 TraesCS3A01G095400 chr6A 86.957 92 12 0 5026 5117 572516856 572516947 2.520000e-18 104.0
18 TraesCS3A01G095400 chr6A 94.286 35 2 0 160 194 30132351 30132317 3.000000e-03 54.7
19 TraesCS3A01G095400 chr4A 96.196 184 7 0 4403 4586 338601819 338601636 8.340000e-78 302.0
20 TraesCS3A01G095400 chr4A 89.796 98 8 2 5026 5122 683623410 683623506 1.940000e-24 124.0
21 TraesCS3A01G095400 chr4A 86.957 92 11 1 5027 5117 37345049 37345140 9.070000e-18 102.0
22 TraesCS3A01G095400 chr5A 95.628 183 8 0 4402 4584 196290515 196290697 1.390000e-75 294.0
23 TraesCS3A01G095400 chr5A 95.109 184 9 0 4402 4585 117693586 117693403 1.800000e-74 291.0
24 TraesCS3A01G095400 chr5A 100.000 30 0 0 166 195 626988736 626988707 7.170000e-04 56.5
25 TraesCS3A01G095400 chr2A 95.628 183 8 0 4403 4585 371155875 371155693 1.390000e-75 294.0
26 TraesCS3A01G095400 chr2A 94.624 186 10 0 4403 4588 694270868 694270683 6.490000e-74 289.0
27 TraesCS3A01G095400 chr2A 83.582 67 8 1 126 192 672419103 672419166 5.540000e-05 60.2
28 TraesCS3A01G095400 chr7B 94.595 185 10 0 4402 4586 103693012 103692828 2.330000e-73 287.0
29 TraesCS3A01G095400 chr1D 77.982 218 27 14 4919 5118 206577480 206577266 3.240000e-22 117.0
30 TraesCS3A01G095400 chr1D 77.523 218 27 12 4919 5123 206577194 206576986 1.510000e-20 111.0
31 TraesCS3A01G095400 chr1D 93.243 74 5 0 298 371 223430862 223430935 5.420000e-20 110.0
32 TraesCS3A01G095400 chr5D 92.105 76 6 0 298 373 2748889 2748814 1.950000e-19 108.0
33 TraesCS3A01G095400 chr5D 93.151 73 5 0 298 370 536531046 536530974 1.950000e-19 108.0
34 TraesCS3A01G095400 chr7A 87.912 91 10 1 5028 5117 208173557 208173467 7.020000e-19 106.0
35 TraesCS3A01G095400 chr7D 91.892 74 6 0 298 371 44648282 44648355 2.520000e-18 104.0
36 TraesCS3A01G095400 chr7D 91.892 74 6 0 298 371 561805193 561805120 2.520000e-18 104.0
37 TraesCS3A01G095400 chr7D 91.892 74 6 0 298 371 575506326 575506399 2.520000e-18 104.0
38 TraesCS3A01G095400 chr7D 91.026 78 6 1 295 371 629518194 629518117 2.520000e-18 104.0
39 TraesCS3A01G095400 chr4B 91.892 74 6 0 298 371 637057784 637057711 2.520000e-18 104.0
40 TraesCS3A01G095400 chr2D 76.301 173 27 3 126 287 604074693 604074862 4.250000e-11 80.5
41 TraesCS3A01G095400 chr2D 85.938 64 6 1 132 195 15735800 15735740 1.190000e-06 65.8
42 TraesCS3A01G095400 chr2D 92.857 42 2 1 154 195 27855041 27855001 5.540000e-05 60.2
43 TraesCS3A01G095400 chr4D 100.000 29 0 0 161 189 368151402 368151374 3.000000e-03 54.7
44 TraesCS3A01G095400 chr1A 96.774 31 1 0 158 188 542134913 542134883 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G095400 chr3A 60681937 60687059 5122 True 9461.000000 9461 100.0000 1 5123 1 chr3A.!!$R1 5122
1 TraesCS3A01G095400 chr3D 48448601 48452968 4367 True 2686.500000 4977 90.7370 399 4914 2 chr3D.!!$R2 4515
2 TraesCS3A01G095400 chr3D 48525456 48526125 669 True 784.000000 784 88.2960 1 652 1 chr3D.!!$R1 651
3 TraesCS3A01G095400 chr3B 77003010 77007584 4574 True 1729.333333 2662 88.4200 392 4914 3 chr3B.!!$R1 4522
4 TraesCS3A01G095400 chr5B 128609443 128610229 786 True 520.500000 675 90.5675 3899 4862 2 chr5B.!!$R1 963
5 TraesCS3A01G095400 chr6D 439917852 439918484 632 True 248.000000 359 81.9665 2997 3664 2 chr6D.!!$R1 667
6 TraesCS3A01G095400 chr6A 572516173 572516947 774 False 229.500000 355 91.8355 4911 5123 2 chr6A.!!$F3 212

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
794 876 0.108567 GCCTCTCTCCAGGAACGAAC 60.109 60.0 0.0 0.0 35.2 3.95 F
1486 1642 0.631212 CCCCTGCCCCTCTGTTTATT 59.369 55.0 0.0 0.0 0.0 1.40 F
1750 1912 0.461163 AGGTTTTGTGCCCGTTTTGC 60.461 50.0 0.0 0.0 0.0 3.68 F
1754 1916 0.532573 TTTGTGCCCGTTTTGCTGAA 59.467 45.0 0.0 0.0 0.0 3.02 F
3266 3725 0.692476 TCCAGGTGCAGTGCTATTGT 59.308 50.0 17.6 0.0 0.0 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1737 1899 0.749649 ATTTCAGCAAAACGGGCACA 59.250 45.000 0.00 0.0 0.00 4.57 R
3241 3700 0.465705 GCACTGCACCTGGAGCTATA 59.534 55.000 16.96 0.0 36.94 1.31 R
3730 4203 2.295909 GCATGCCAAAAGTTCCACTACA 59.704 45.455 6.36 0.0 0.00 2.74 R
3844 4317 1.154035 GCGCAAAAGAATGGGGACG 60.154 57.895 0.30 0.0 34.13 4.79 R
4931 5435 0.032678 CAGCACATACGCCCCTCTAG 59.967 60.000 0.00 0.0 0.00 2.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
72 73 0.810031 CGATGACACCCGGAATGTCC 60.810 60.000 26.62 16.05 44.91 4.02
103 104 2.271173 CTTAAGGACCACCGCCCC 59.729 66.667 0.00 0.00 41.83 5.80
111 112 3.402681 CCACCGCCCCAGAGTCAT 61.403 66.667 0.00 0.00 0.00 3.06
130 131 2.107950 TGGTTGTCATCATCGAACCC 57.892 50.000 0.00 0.00 37.63 4.11
172 173 2.481568 CCGCATATGCATGACGAGAAAT 59.518 45.455 26.52 0.00 42.21 2.17
179 180 3.531538 TGCATGACGAGAAATCCTAACC 58.468 45.455 0.00 0.00 0.00 2.85
184 185 1.854227 CGAGAAATCCTAACCTCGCC 58.146 55.000 0.00 0.00 41.31 5.54
226 227 4.371417 ACCGTCTAGCCCGTCCCA 62.371 66.667 1.80 0.00 0.00 4.37
227 228 3.072468 CCGTCTAGCCCGTCCCAA 61.072 66.667 1.80 0.00 0.00 4.12
238 239 2.878526 GCCCGTCCCAACTAATGAACTT 60.879 50.000 0.00 0.00 0.00 2.66
255 256 1.550976 ACTTGACGAGGATTGGGACTC 59.449 52.381 0.00 0.00 0.00 3.36
289 290 1.226128 GAAGAAGCGTCGCCATTGC 60.226 57.895 14.86 0.00 0.00 3.56
296 297 4.120331 GTCGCCATTGCACTGCCC 62.120 66.667 0.00 0.00 37.32 5.36
300 301 2.259204 CCATTGCACTGCCCGTTG 59.741 61.111 0.00 0.00 0.00 4.10
310 311 4.400884 TGCACTGCCCGTTGAAATATATTT 59.599 37.500 10.51 10.51 0.00 1.40
314 315 3.566322 TGCCCGTTGAAATATATTTCCCG 59.434 43.478 27.53 26.38 44.16 5.14
316 317 3.566322 CCCGTTGAAATATATTTCCCGCA 59.434 43.478 27.53 12.70 44.16 5.69
318 319 5.390613 CCGTTGAAATATATTTCCCGCATC 58.609 41.667 27.53 12.83 44.16 3.91
320 321 6.293955 CCGTTGAAATATATTTCCCGCATCTT 60.294 38.462 27.53 0.00 44.16 2.40
323 324 7.214467 TGAAATATATTTCCCGCATCTTTCC 57.786 36.000 27.53 6.71 44.16 3.13
327 328 2.806945 TTTCCCGCATCTTTCCATCT 57.193 45.000 0.00 0.00 0.00 2.90
331 332 1.672881 CCCGCATCTTTCCATCTGTTC 59.327 52.381 0.00 0.00 0.00 3.18
344 345 3.127548 CCATCTGTTCGGACTTTTGGATG 59.872 47.826 0.00 2.03 0.00 3.51
360 361 1.141657 GGATGAGTTGGCTGGAGCATA 59.858 52.381 0.20 0.00 44.36 3.14
364 365 3.700538 TGAGTTGGCTGGAGCATAAATT 58.299 40.909 0.20 0.00 44.36 1.82
370 371 6.552350 AGTTGGCTGGAGCATAAATTCAATAT 59.448 34.615 0.20 0.00 44.36 1.28
376 377 5.163513 GGAGCATAAATTCAATATTGCCCG 58.836 41.667 10.76 0.00 0.00 6.13
378 379 5.531634 AGCATAAATTCAATATTGCCCGTG 58.468 37.500 10.76 5.95 0.00 4.94
385 386 3.206964 TCAATATTGCCCGTGCGAAATA 58.793 40.909 10.76 0.00 41.78 1.40
386 387 3.002862 TCAATATTGCCCGTGCGAAATAC 59.997 43.478 10.76 0.00 41.78 1.89
387 388 2.025589 TATTGCCCGTGCGAAATACA 57.974 45.000 0.00 0.00 41.78 2.29
388 389 1.388547 ATTGCCCGTGCGAAATACAT 58.611 45.000 0.00 0.00 41.78 2.29
389 390 0.449786 TTGCCCGTGCGAAATACATG 59.550 50.000 0.00 0.00 41.78 3.21
431 434 4.814294 GGTCCAGCAGTACGGGCG 62.814 72.222 6.87 3.21 36.08 6.13
463 467 2.155279 GCAGAACCAACCCTTCTCTTC 58.845 52.381 0.00 0.00 0.00 2.87
472 476 5.309806 ACCAACCCTTCTCTTCTTTTAGCTA 59.690 40.000 0.00 0.00 0.00 3.32
486 493 6.465084 TCTTTTAGCTAAGAACCAGTCCTTC 58.535 40.000 6.24 0.00 31.45 3.46
593 628 1.073199 AACCAAAGAGGCCGGACAG 59.927 57.895 11.69 0.00 43.14 3.51
596 631 1.078848 CAAAGAGGCCGGACAGGAG 60.079 63.158 11.69 0.00 45.00 3.69
669 706 1.373590 CCTCGCCCAAACATAACCCG 61.374 60.000 0.00 0.00 0.00 5.28
670 707 1.988834 CTCGCCCAAACATAACCCGC 61.989 60.000 0.00 0.00 0.00 6.13
673 710 2.411504 CCCAAACATAACCCGCCCG 61.412 63.158 0.00 0.00 0.00 6.13
674 711 2.487892 CAAACATAACCCGCCCGC 59.512 61.111 0.00 0.00 0.00 6.13
675 712 3.128845 AAACATAACCCGCCCGCG 61.129 61.111 0.00 0.00 39.44 6.46
720 797 0.399233 CCGAGGGAGGGAGAAGGATT 60.399 60.000 0.00 0.00 0.00 3.01
791 873 0.610687 AAAGCCTCTCTCCAGGAACG 59.389 55.000 0.00 0.00 35.20 3.95
792 874 0.251832 AAGCCTCTCTCCAGGAACGA 60.252 55.000 0.00 0.00 35.20 3.85
793 875 0.251832 AGCCTCTCTCCAGGAACGAA 60.252 55.000 0.00 0.00 35.20 3.85
794 876 0.108567 GCCTCTCTCCAGGAACGAAC 60.109 60.000 0.00 0.00 35.20 3.95
1359 1515 2.043852 GCCGACTCCTCCTCCTCA 60.044 66.667 0.00 0.00 0.00 3.86
1470 1626 2.356667 CTGCAAGGTCCTTCCCCC 59.643 66.667 0.00 0.00 36.75 5.40
1472 1628 2.356667 GCAAGGTCCTTCCCCCTG 59.643 66.667 0.00 0.00 36.75 4.45
1474 1630 2.941583 AAGGTCCTTCCCCCTGCC 60.942 66.667 0.00 0.00 36.75 4.85
1486 1642 0.631212 CCCCTGCCCCTCTGTTTATT 59.369 55.000 0.00 0.00 0.00 1.40
1489 1645 3.309556 CCCCTGCCCCTCTGTTTATTTTA 60.310 47.826 0.00 0.00 0.00 1.52
1490 1646 4.349365 CCCTGCCCCTCTGTTTATTTTAA 58.651 43.478 0.00 0.00 0.00 1.52
1491 1647 4.775253 CCCTGCCCCTCTGTTTATTTTAAA 59.225 41.667 0.00 0.00 0.00 1.52
1493 1649 6.406961 CCCTGCCCCTCTGTTTATTTTAAATC 60.407 42.308 0.00 0.00 0.00 2.17
1537 1696 6.202516 TGATATGTTGTCGTCTGTGTATGA 57.797 37.500 0.00 0.00 0.00 2.15
1553 1712 4.506654 GTGTATGACCGCATTCGTTTATCT 59.493 41.667 0.00 0.00 35.94 1.98
1560 1719 4.214545 ACCGCATTCGTTTATCTTGTGAAA 59.785 37.500 0.00 0.00 0.00 2.69
1563 1722 6.307800 CCGCATTCGTTTATCTTGTGAAAAAT 59.692 34.615 0.00 0.00 0.00 1.82
1581 1740 0.837272 ATCGTGGGTGGGACTTATGG 59.163 55.000 0.00 0.00 0.00 2.74
1584 1743 1.271707 CGTGGGTGGGACTTATGGTTT 60.272 52.381 0.00 0.00 0.00 3.27
1606 1765 8.384365 GGTTTCATTTGTTTATTTGTGAACGTT 58.616 29.630 0.00 0.00 0.00 3.99
1737 1899 5.552178 CAGACTGCTCTAAAGGTAGGTTTT 58.448 41.667 0.00 0.00 0.00 2.43
1750 1912 0.461163 AGGTTTTGTGCCCGTTTTGC 60.461 50.000 0.00 0.00 0.00 3.68
1754 1916 0.532573 TTTGTGCCCGTTTTGCTGAA 59.467 45.000 0.00 0.00 0.00 3.02
1781 1951 1.065636 GGCTCTGGTGTAGTTTACCCC 60.066 57.143 0.00 0.00 37.40 4.95
1782 1952 1.626825 GCTCTGGTGTAGTTTACCCCA 59.373 52.381 0.00 0.00 37.40 4.96
1795 1965 4.348754 AGTTTACCCCAAGCTTAGTGTGTA 59.651 41.667 0.00 0.00 0.00 2.90
1797 1967 3.418684 ACCCCAAGCTTAGTGTGTAAG 57.581 47.619 0.00 0.00 0.00 2.34
1864 2034 7.098074 TCATTGTATGCAATCATGTTGCTTA 57.902 32.000 23.89 20.30 42.91 3.09
1869 2039 4.852134 TGCAATCATGTTGCTTAGTGTT 57.148 36.364 23.89 0.00 45.13 3.32
1870 2040 5.956068 TGCAATCATGTTGCTTAGTGTTA 57.044 34.783 23.89 7.50 45.13 2.41
1873 2043 7.696755 TGCAATCATGTTGCTTAGTGTTATAG 58.303 34.615 23.89 0.00 45.13 1.31
1874 2044 7.336679 TGCAATCATGTTGCTTAGTGTTATAGT 59.663 33.333 23.89 0.00 45.13 2.12
1905 2075 8.948853 TCTAATTAAAATGTTTCAGTTCAGCG 57.051 30.769 0.00 0.00 0.00 5.18
1906 2076 6.452244 AATTAAAATGTTTCAGTTCAGCGC 57.548 33.333 0.00 0.00 0.00 5.92
1915 2085 2.071540 TCAGTTCAGCGCATCTTTGAG 58.928 47.619 11.47 0.00 0.00 3.02
1930 2100 6.460537 GCATCTTTGAGCAAATATGATGGTGA 60.461 38.462 19.30 3.03 37.17 4.02
1931 2101 7.658261 CATCTTTGAGCAAATATGATGGTGAT 58.342 34.615 13.08 0.95 37.17 3.06
1986 2160 4.661993 TGTTGCGTTGAGTGCTTTATAG 57.338 40.909 0.00 0.00 0.00 1.31
2011 2185 3.059982 GGGCAAAAGCCCCTGTTC 58.940 61.111 14.59 0.00 43.99 3.18
2111 2285 4.142093 GCAGCCAACACTATGAAATCCATT 60.142 41.667 0.00 0.00 36.71 3.16
2125 2299 4.942761 AATCCATTGCAACCATCCATAC 57.057 40.909 0.00 0.00 0.00 2.39
2126 2300 3.668141 TCCATTGCAACCATCCATACT 57.332 42.857 0.00 0.00 0.00 2.12
2136 2310 5.687441 GCAACCATCCATACTCCAGATTGTA 60.687 44.000 0.00 0.00 0.00 2.41
2187 2361 3.128589 CACGCATTACCTTTACATGCCTT 59.871 43.478 0.00 0.00 40.26 4.35
2214 2388 3.321396 TGCCATGTTCTTCTTTGCATGAA 59.679 39.130 0.00 0.00 40.61 2.57
2281 2455 2.758423 GTTGGTTTATGCCCTTACCCTG 59.242 50.000 0.00 0.00 0.00 4.45
2338 2512 6.061441 TGCGGTCCATTAGTTTGATCATTAT 58.939 36.000 0.00 0.00 0.00 1.28
2347 2521 8.537223 CATTAGTTTGATCATTATTGCAGCAAC 58.463 33.333 10.85 0.00 0.00 4.17
2407 2581 8.585471 TGTATAGGTAGTTGTAGCTTGTAAGT 57.415 34.615 0.00 0.00 38.06 2.24
2423 2597 5.450818 TGTAAGTATCTTTCATGCCCCTT 57.549 39.130 0.00 0.00 0.00 3.95
2492 2926 4.264253 TGTTCCTTGTATGAGGATGCTTG 58.736 43.478 0.00 0.00 44.98 4.01
2496 2930 3.538591 CTTGTATGAGGATGCTTGCTGA 58.461 45.455 0.00 0.00 0.00 4.26
2512 2946 5.388408 TTGCTGATGTTATCATTTGTGCA 57.612 34.783 0.00 0.00 38.85 4.57
2520 2954 8.522003 TGATGTTATCATTTGTGCATAAGTGTT 58.478 29.630 16.30 11.66 33.59 3.32
2554 2988 4.081087 TCCTGTTACCATCTGGCTAACTTC 60.081 45.833 15.97 0.72 39.32 3.01
2705 3139 3.245371 TGGTCATGCTTCCTCCAAAAGAT 60.245 43.478 0.00 0.00 0.00 2.40
2732 3166 4.641094 CCACCATTTTGGCATGCAATATTT 59.359 37.500 21.36 0.00 42.67 1.40
2741 3175 7.594351 TTGGCATGCAATATTTGTAATCCTA 57.406 32.000 21.36 0.00 0.00 2.94
2789 3231 9.764870 CCTATGATGCTTGAACATATTTAATCG 57.235 33.333 0.00 0.00 0.00 3.34
2800 3242 6.509418 ACATATTTAATCGTTGCCACTTGT 57.491 33.333 0.00 0.00 0.00 3.16
2812 3254 5.393962 GTTGCCACTTGTATTGCTTCTAAG 58.606 41.667 0.00 0.00 0.00 2.18
2877 3319 5.589050 GCTGGTACTAGGGTCCTTTTAAATG 59.411 44.000 8.46 0.00 0.00 2.32
2909 3351 3.904136 AACTGGCTCAAAAGTTCATCG 57.096 42.857 0.00 0.00 30.87 3.84
2918 3360 5.117592 GCTCAAAAGTTCATCGGATTTGTTG 59.882 40.000 0.00 0.00 33.76 3.33
2919 3361 6.384258 TCAAAAGTTCATCGGATTTGTTGA 57.616 33.333 0.00 0.00 33.76 3.18
2933 3375 7.226523 TCGGATTTGTTGAATGTGGATATGTAG 59.773 37.037 0.00 0.00 0.00 2.74
2935 3377 8.562892 GGATTTGTTGAATGTGGATATGTAGAG 58.437 37.037 0.00 0.00 0.00 2.43
2969 3411 9.020731 AGGTTGTTTTCTATTTATAAGTGGTGG 57.979 33.333 0.00 0.00 0.00 4.61
2976 3418 7.136822 TCTATTTATAAGTGGTGGTGCATCT 57.863 36.000 0.00 0.00 0.00 2.90
2989 3431 5.395768 GGTGGTGCATCTCTATACTTCAAGT 60.396 44.000 0.00 0.00 0.00 3.16
2992 3434 8.577296 GTGGTGCATCTCTATACTTCAAGTATA 58.423 37.037 15.24 15.24 41.36 1.47
2993 3435 9.314133 TGGTGCATCTCTATACTTCAAGTATAT 57.686 33.333 16.20 1.79 41.36 0.86
3079 3523 7.572759 TCTTCATGAAGTTTGTAATCGTGTTC 58.427 34.615 29.80 0.00 39.38 3.18
3081 3525 7.568679 CTTCATGAAGTTTGTAATCGTGTTCGA 60.569 37.037 24.65 0.00 40.60 3.71
3131 3577 1.133025 GTGCGCCAAACTGCTATGATT 59.867 47.619 4.18 0.00 0.00 2.57
3196 3642 3.364764 CGTAGCTATCGTAGGCAGGTAAC 60.365 52.174 0.00 0.00 0.00 2.50
3214 3672 6.761714 CAGGTAACGCTTGTAATCCTAGATTT 59.238 38.462 0.00 0.00 46.39 2.17
3232 3691 8.642432 CCTAGATTTCTGTGATGTATCTTGGTA 58.358 37.037 0.00 0.00 35.16 3.25
3241 3700 8.877864 TGTGATGTATCTTGGTATTTTTCCTT 57.122 30.769 0.00 0.00 0.00 3.36
3266 3725 0.692476 TCCAGGTGCAGTGCTATTGT 59.308 50.000 17.60 0.00 0.00 2.71
3267 3726 1.073763 TCCAGGTGCAGTGCTATTGTT 59.926 47.619 17.60 0.00 0.00 2.83
3288 3747 5.885912 TGTTTTTCTGTATAATCAGGGAGCC 59.114 40.000 0.00 0.00 36.25 4.70
3295 3754 4.910913 TGTATAATCAGGGAGCCATAACCA 59.089 41.667 0.00 0.00 0.00 3.67
3332 3795 5.654650 TGTTCAGGGTCAAATGTTAACACTT 59.345 36.000 11.22 2.83 0.00 3.16
3386 3849 1.806496 TGCCTGCTCCTGTATGGTAT 58.194 50.000 0.00 0.00 37.07 2.73
3389 3854 1.337260 CCTGCTCCTGTATGGTATCGC 60.337 57.143 0.00 0.00 37.07 4.58
3428 3893 5.279056 GGAGTATGGGAGTCTATTTTCCTCG 60.279 48.000 0.00 0.00 33.85 4.63
3443 3908 1.005097 TCCTCGCTAACCACTGGACTA 59.995 52.381 0.71 0.00 0.00 2.59
3452 3917 6.380190 GCTAACCACTGGACTATATCTTACG 58.620 44.000 0.71 0.00 0.00 3.18
3504 3971 8.409358 GGTGATATACCTTCCTATGCAATTTT 57.591 34.615 0.00 0.00 46.51 1.82
3603 4071 5.574188 AGAGCATTGTCCCATAAAGACTTT 58.426 37.500 5.62 5.62 35.21 2.66
3667 4139 9.314321 TGTATGCTTTATTAGACACTAAGAAGC 57.686 33.333 21.52 21.52 0.00 3.86
3725 4198 3.968649 ACGATGGCATGTGAAAATATGC 58.031 40.909 3.81 0.00 46.76 3.14
3764 4237 5.402997 TTTGGCATGCATCTTTCATGTAA 57.597 34.783 21.36 0.00 42.34 2.41
3844 4317 4.153835 GCTATATGCCAAGAGAAGATGCAC 59.846 45.833 0.00 0.00 34.33 4.57
3908 4381 1.654105 GTGTCTCTGAATGGTAACGCG 59.346 52.381 3.53 3.53 42.51 6.01
3928 4401 0.608130 CAGACATTCCGTCCACTCCA 59.392 55.000 0.00 0.00 46.69 3.86
3962 4436 6.974622 ACAGTTTTGTTTCATGATCTCAACAC 59.025 34.615 9.65 11.21 32.28 3.32
3965 4439 7.284034 AGTTTTGTTTCATGATCTCAACACTCT 59.716 33.333 9.65 6.58 27.56 3.24
3974 4448 7.995488 TCATGATCTCAACACTCTGAGTATCTA 59.005 37.037 10.47 1.42 42.93 1.98
3975 4449 8.795513 CATGATCTCAACACTCTGAGTATCTAT 58.204 37.037 10.47 0.14 42.93 1.98
3990 4464 5.497474 AGTATCTATTGGCGTTTCCTTTGT 58.503 37.500 0.00 0.00 35.26 2.83
3991 4465 6.646267 AGTATCTATTGGCGTTTCCTTTGTA 58.354 36.000 0.00 0.00 35.26 2.41
3992 4466 5.813080 ATCTATTGGCGTTTCCTTTGTAC 57.187 39.130 0.00 0.00 35.26 2.90
3999 4473 3.120889 GGCGTTTCCTTTGTACTAACGTC 60.121 47.826 0.00 0.00 42.40 4.34
4004 4478 6.199719 CGTTTCCTTTGTACTAACGTCTTTCT 59.800 38.462 0.00 0.00 37.42 2.52
4203 4692 3.659786 TGTTATAGGTGTGAGTGTGTGC 58.340 45.455 0.00 0.00 0.00 4.57
4256 4745 2.738521 CGGTGAGGTGCTGAACGG 60.739 66.667 0.00 0.00 0.00 4.44
4302 4793 1.376466 GTGGAGGGTGCATGAGTGT 59.624 57.895 0.00 0.00 0.00 3.55
4353 4847 7.962003 TCCCCTGTATAGGCTATAAGAAATCTT 59.038 37.037 15.57 0.77 43.16 2.40
4404 4898 9.331282 GAAATGAGTATATATAGACCATTGCCC 57.669 37.037 17.45 10.69 0.00 5.36
4405 4899 8.629821 AATGAGTATATATAGACCATTGCCCT 57.370 34.615 16.64 1.61 0.00 5.19
4406 4900 7.423844 TGAGTATATATAGACCATTGCCCTG 57.576 40.000 3.88 0.00 0.00 4.45
4407 4901 6.959954 TGAGTATATATAGACCATTGCCCTGT 59.040 38.462 3.88 0.00 0.00 4.00
4408 4902 7.457852 TGAGTATATATAGACCATTGCCCTGTT 59.542 37.037 3.88 0.00 0.00 3.16
4409 4903 7.852263 AGTATATATAGACCATTGCCCTGTTC 58.148 38.462 3.88 0.00 0.00 3.18
4410 4904 6.702449 ATATATAGACCATTGCCCTGTTCA 57.298 37.500 0.00 0.00 0.00 3.18
4411 4905 3.737559 ATAGACCATTGCCCTGTTCAA 57.262 42.857 0.00 0.00 0.00 2.69
4412 4906 1.915141 AGACCATTGCCCTGTTCAAG 58.085 50.000 0.00 0.00 0.00 3.02
4413 4907 1.425066 AGACCATTGCCCTGTTCAAGA 59.575 47.619 0.00 0.00 0.00 3.02
4414 4908 2.158475 AGACCATTGCCCTGTTCAAGAA 60.158 45.455 0.00 0.00 0.00 2.52
4415 4909 2.827921 GACCATTGCCCTGTTCAAGAAT 59.172 45.455 0.00 0.00 0.00 2.40
4416 4910 3.242011 ACCATTGCCCTGTTCAAGAATT 58.758 40.909 0.00 0.00 0.00 2.17
4417 4911 3.259123 ACCATTGCCCTGTTCAAGAATTC 59.741 43.478 0.00 0.00 0.00 2.17
4418 4912 3.258872 CCATTGCCCTGTTCAAGAATTCA 59.741 43.478 8.44 0.00 0.00 2.57
4419 4913 4.081309 CCATTGCCCTGTTCAAGAATTCAT 60.081 41.667 8.44 0.00 0.00 2.57
4420 4914 4.789012 TTGCCCTGTTCAAGAATTCATC 57.211 40.909 8.44 0.00 0.00 2.92
4421 4915 3.091545 TGCCCTGTTCAAGAATTCATCC 58.908 45.455 8.44 0.00 0.00 3.51
4422 4916 2.098117 GCCCTGTTCAAGAATTCATCCG 59.902 50.000 8.44 0.00 0.00 4.18
4423 4917 3.609853 CCCTGTTCAAGAATTCATCCGA 58.390 45.455 8.44 0.00 0.00 4.55
4424 4918 4.202441 CCCTGTTCAAGAATTCATCCGAT 58.798 43.478 8.44 0.00 0.00 4.18
4425 4919 4.641989 CCCTGTTCAAGAATTCATCCGATT 59.358 41.667 8.44 0.00 0.00 3.34
4426 4920 5.822519 CCCTGTTCAAGAATTCATCCGATTA 59.177 40.000 8.44 0.00 0.00 1.75
4427 4921 6.318648 CCCTGTTCAAGAATTCATCCGATTAA 59.681 38.462 8.44 0.00 0.00 1.40
4428 4922 7.189512 CCTGTTCAAGAATTCATCCGATTAAC 58.810 38.462 8.44 1.74 0.00 2.01
4429 4923 7.083875 TGTTCAAGAATTCATCCGATTAACC 57.916 36.000 8.44 0.00 0.00 2.85
4430 4924 6.657117 TGTTCAAGAATTCATCCGATTAACCA 59.343 34.615 8.44 0.00 0.00 3.67
4431 4925 6.925610 TCAAGAATTCATCCGATTAACCAG 57.074 37.500 8.44 0.00 0.00 4.00
4432 4926 6.414732 TCAAGAATTCATCCGATTAACCAGT 58.585 36.000 8.44 0.00 0.00 4.00
4433 4927 6.884295 TCAAGAATTCATCCGATTAACCAGTT 59.116 34.615 8.44 0.00 0.00 3.16
4434 4928 8.044309 TCAAGAATTCATCCGATTAACCAGTTA 58.956 33.333 8.44 0.00 0.00 2.24
4435 4929 8.673711 CAAGAATTCATCCGATTAACCAGTTAA 58.326 33.333 8.44 5.51 39.12 2.01
4436 4930 8.209917 AGAATTCATCCGATTAACCAGTTAAC 57.790 34.615 8.44 0.00 37.80 2.01
4437 4931 8.047310 AGAATTCATCCGATTAACCAGTTAACT 58.953 33.333 8.44 1.12 37.80 2.24
4438 4932 8.575649 AATTCATCCGATTAACCAGTTAACTT 57.424 30.769 5.07 0.00 37.80 2.66
4439 4933 6.978343 TCATCCGATTAACCAGTTAACTTG 57.022 37.500 5.07 5.14 37.80 3.16
4440 4934 5.353123 TCATCCGATTAACCAGTTAACTTGC 59.647 40.000 5.07 0.00 37.80 4.01
4441 4935 4.004982 TCCGATTAACCAGTTAACTTGCC 58.995 43.478 5.07 0.00 37.80 4.52
4442 4936 3.181514 CCGATTAACCAGTTAACTTGCCG 60.182 47.826 5.07 3.31 37.80 5.69
4443 4937 3.680937 CGATTAACCAGTTAACTTGCCGA 59.319 43.478 5.07 0.00 37.80 5.54
4444 4938 4.331717 CGATTAACCAGTTAACTTGCCGAT 59.668 41.667 5.07 0.00 37.80 4.18
4445 4939 5.163794 CGATTAACCAGTTAACTTGCCGATT 60.164 40.000 5.07 0.00 37.80 3.34
4446 4940 6.036300 CGATTAACCAGTTAACTTGCCGATTA 59.964 38.462 5.07 0.00 37.80 1.75
4447 4941 7.413219 CGATTAACCAGTTAACTTGCCGATTAA 60.413 37.037 5.07 4.36 37.80 1.40
4448 4942 7.690952 TTAACCAGTTAACTTGCCGATTAAT 57.309 32.000 5.07 0.00 30.78 1.40
4449 4943 5.813080 ACCAGTTAACTTGCCGATTAATC 57.187 39.130 5.07 5.30 0.00 1.75
4450 4944 4.638865 ACCAGTTAACTTGCCGATTAATCC 59.361 41.667 5.07 0.00 0.00 3.01
4451 4945 4.036380 CCAGTTAACTTGCCGATTAATCCC 59.964 45.833 5.07 2.26 0.00 3.85
4452 4946 4.881850 CAGTTAACTTGCCGATTAATCCCT 59.118 41.667 5.07 0.00 0.00 4.20
4453 4947 6.053005 CAGTTAACTTGCCGATTAATCCCTA 58.947 40.000 5.07 0.00 0.00 3.53
4454 4948 6.018180 CAGTTAACTTGCCGATTAATCCCTAC 60.018 42.308 5.07 0.00 0.00 3.18
4455 4949 4.772886 AACTTGCCGATTAATCCCTACT 57.227 40.909 9.87 0.00 0.00 2.57
4456 4950 4.338379 ACTTGCCGATTAATCCCTACTC 57.662 45.455 9.87 0.00 0.00 2.59
4457 4951 3.709653 ACTTGCCGATTAATCCCTACTCA 59.290 43.478 9.87 0.00 0.00 3.41
4458 4952 4.348168 ACTTGCCGATTAATCCCTACTCAT 59.652 41.667 9.87 0.00 0.00 2.90
4459 4953 5.542635 ACTTGCCGATTAATCCCTACTCATA 59.457 40.000 9.87 0.00 0.00 2.15
4460 4954 5.661056 TGCCGATTAATCCCTACTCATAG 57.339 43.478 9.87 0.00 0.00 2.23
4461 4955 4.466370 TGCCGATTAATCCCTACTCATAGG 59.534 45.833 9.87 2.61 46.99 2.57
4469 4963 2.359981 CCTACTCATAGGGTCACCGA 57.640 55.000 0.00 0.00 44.06 4.69
4470 4964 2.231529 CCTACTCATAGGGTCACCGAG 58.768 57.143 0.00 0.00 44.06 4.63
4471 4965 2.423088 CCTACTCATAGGGTCACCGAGT 60.423 54.545 7.23 7.23 44.06 4.18
4472 4966 3.181447 CCTACTCATAGGGTCACCGAGTA 60.181 52.174 8.54 8.54 44.06 2.59
4473 4967 2.933573 ACTCATAGGGTCACCGAGTAG 58.066 52.381 0.48 0.00 43.47 2.57
4474 4968 1.609555 CTCATAGGGTCACCGAGTAGC 59.390 57.143 0.00 0.00 43.47 3.58
4475 4969 0.674534 CATAGGGTCACCGAGTAGCC 59.325 60.000 0.00 0.00 43.47 3.93
4476 4970 0.822532 ATAGGGTCACCGAGTAGCCG 60.823 60.000 0.00 0.00 43.47 5.52
4477 4971 1.913951 TAGGGTCACCGAGTAGCCGA 61.914 60.000 0.00 0.00 43.47 5.54
4478 4972 2.125961 GGGTCACCGAGTAGCCGAT 61.126 63.158 0.00 0.00 0.00 4.18
4479 4973 0.820891 GGGTCACCGAGTAGCCGATA 60.821 60.000 0.00 0.00 0.00 2.92
4480 4974 1.027357 GGTCACCGAGTAGCCGATAA 58.973 55.000 0.00 0.00 0.00 1.75
4481 4975 1.406539 GGTCACCGAGTAGCCGATAAA 59.593 52.381 0.00 0.00 0.00 1.40
4482 4976 2.457970 GTCACCGAGTAGCCGATAAAC 58.542 52.381 0.00 0.00 0.00 2.01
4483 4977 1.406539 TCACCGAGTAGCCGATAAACC 59.593 52.381 0.00 0.00 0.00 3.27
4484 4978 0.383231 ACCGAGTAGCCGATAAACCG 59.617 55.000 0.00 0.00 0.00 4.44
4485 4979 0.664761 CCGAGTAGCCGATAAACCGA 59.335 55.000 0.00 0.00 0.00 4.69
4486 4980 1.066002 CCGAGTAGCCGATAAACCGAA 59.934 52.381 0.00 0.00 0.00 4.30
4487 4981 2.480073 CCGAGTAGCCGATAAACCGAAA 60.480 50.000 0.00 0.00 0.00 3.46
4488 4982 3.181397 CGAGTAGCCGATAAACCGAAAA 58.819 45.455 0.00 0.00 0.00 2.29
4489 4983 3.613737 CGAGTAGCCGATAAACCGAAAAA 59.386 43.478 0.00 0.00 0.00 1.94
4490 4984 4.269363 CGAGTAGCCGATAAACCGAAAAAT 59.731 41.667 0.00 0.00 0.00 1.82
4491 4985 5.555818 CGAGTAGCCGATAAACCGAAAAATC 60.556 44.000 0.00 0.00 0.00 2.17
4492 4986 3.668596 AGCCGATAAACCGAAAAATCG 57.331 42.857 0.00 0.00 40.60 3.34
4493 4987 3.004862 AGCCGATAAACCGAAAAATCGT 58.995 40.909 0.00 0.00 39.58 3.73
4494 4988 3.063045 AGCCGATAAACCGAAAAATCGTC 59.937 43.478 0.00 0.00 39.58 4.20
4495 4989 3.786489 GCCGATAAACCGAAAAATCGTCC 60.786 47.826 0.00 0.00 39.58 4.79
4496 4990 3.542680 CCGATAAACCGAAAAATCGTCCG 60.543 47.826 0.00 0.00 39.58 4.79
4497 4991 3.304026 CGATAAACCGAAAAATCGTCCGA 59.696 43.478 0.00 0.00 37.15 4.55
4498 4992 4.026310 CGATAAACCGAAAAATCGTCCGAT 60.026 41.667 0.00 0.00 37.15 4.18
4499 4993 5.501252 CGATAAACCGAAAAATCGTCCGATT 60.501 40.000 9.01 9.01 45.67 3.34
4500 4994 6.291743 CGATAAACCGAAAAATCGTCCGATTA 60.292 38.462 14.61 0.00 43.26 1.75
4501 4995 5.610235 AAACCGAAAAATCGTCCGATTAA 57.390 34.783 14.61 0.00 43.26 1.40
4502 4996 5.806366 AACCGAAAAATCGTCCGATTAAT 57.194 34.783 14.61 7.33 43.26 1.40
4503 4997 5.806366 ACCGAAAAATCGTCCGATTAATT 57.194 34.783 14.61 12.55 43.26 1.40
4504 4998 5.565695 ACCGAAAAATCGTCCGATTAATTG 58.434 37.500 14.61 10.27 43.26 2.32
4505 4999 5.352016 ACCGAAAAATCGTCCGATTAATTGA 59.648 36.000 14.61 0.00 43.26 2.57
4506 5000 6.037830 ACCGAAAAATCGTCCGATTAATTGAT 59.962 34.615 14.61 0.00 43.26 2.57
4507 5001 6.910433 CCGAAAAATCGTCCGATTAATTGATT 59.090 34.615 14.61 2.75 43.26 2.57
4508 5002 8.065407 CCGAAAAATCGTCCGATTAATTGATTA 58.935 33.333 14.61 0.00 43.26 1.75
4509 5003 9.428363 CGAAAAATCGTCCGATTAATTGATTAA 57.572 29.630 14.61 0.00 43.26 1.40
4513 5007 9.677567 AAATCGTCCGATTAATTGATTAAATGG 57.322 29.630 14.61 5.88 43.26 3.16
4514 5008 6.664515 TCGTCCGATTAATTGATTAAATGGC 58.335 36.000 4.10 2.85 36.02 4.40
4515 5009 5.856455 CGTCCGATTAATTGATTAAATGGCC 59.144 40.000 4.10 0.00 36.02 5.36
4516 5010 5.856455 GTCCGATTAATTGATTAAATGGCCG 59.144 40.000 4.10 0.00 36.02 6.13
4517 5011 5.765677 TCCGATTAATTGATTAAATGGCCGA 59.234 36.000 4.10 0.00 36.02 5.54
4518 5012 6.432783 TCCGATTAATTGATTAAATGGCCGAT 59.567 34.615 4.10 0.00 36.02 4.18
4519 5013 7.040062 TCCGATTAATTGATTAAATGGCCGATT 60.040 33.333 4.10 0.00 36.02 3.34
4520 5014 8.240682 CCGATTAATTGATTAAATGGCCGATTA 58.759 33.333 4.10 0.00 36.02 1.75
4521 5015 9.619316 CGATTAATTGATTAAATGGCCGATTAA 57.381 29.630 13.33 13.33 36.02 1.40
4523 5017 9.705290 ATTAATTGATTAAATGGCCGATTAACC 57.295 29.630 13.26 6.28 36.02 2.85
4524 5018 4.822036 TGATTAAATGGCCGATTAACCG 57.178 40.909 13.26 0.00 0.00 4.44
4525 5019 4.452825 TGATTAAATGGCCGATTAACCGA 58.547 39.130 13.26 1.00 0.00 4.69
4526 5020 5.067273 TGATTAAATGGCCGATTAACCGAT 58.933 37.500 13.26 0.65 0.00 4.18
4527 5021 5.533154 TGATTAAATGGCCGATTAACCGATT 59.467 36.000 13.26 0.34 0.00 3.34
4528 5022 6.711194 TGATTAAATGGCCGATTAACCGATTA 59.289 34.615 13.26 0.00 0.00 1.75
4529 5023 6.939132 TTAAATGGCCGATTAACCGATTAA 57.061 33.333 8.31 0.00 34.78 1.40
4530 5024 7.513371 TTAAATGGCCGATTAACCGATTAAT 57.487 32.000 8.31 0.00 42.55 1.40
4540 5034 5.458041 TTAACCGATTAATCCCCTACTCG 57.542 43.478 9.87 0.00 0.00 4.18
4541 5035 2.954792 ACCGATTAATCCCCTACTCGT 58.045 47.619 9.87 0.00 0.00 4.18
4542 5036 3.303049 ACCGATTAATCCCCTACTCGTT 58.697 45.455 9.87 0.00 0.00 3.85
4543 5037 4.473444 ACCGATTAATCCCCTACTCGTTA 58.527 43.478 9.87 0.00 0.00 3.18
4544 5038 4.522022 ACCGATTAATCCCCTACTCGTTAG 59.478 45.833 9.87 0.00 0.00 2.34
4545 5039 4.483311 CGATTAATCCCCTACTCGTTAGC 58.517 47.826 9.87 0.00 0.00 3.09
4546 5040 4.617762 CGATTAATCCCCTACTCGTTAGCC 60.618 50.000 9.87 0.00 0.00 3.93
4547 5041 2.170012 AATCCCCTACTCGTTAGCCA 57.830 50.000 0.00 0.00 0.00 4.75
4548 5042 2.400467 ATCCCCTACTCGTTAGCCAT 57.600 50.000 0.00 0.00 0.00 4.40
4549 5043 1.700955 TCCCCTACTCGTTAGCCATC 58.299 55.000 0.00 0.00 0.00 3.51
4550 5044 0.680061 CCCCTACTCGTTAGCCATCC 59.320 60.000 0.00 0.00 0.00 3.51
4551 5045 0.314302 CCCTACTCGTTAGCCATCCG 59.686 60.000 0.00 0.00 0.00 4.18
4552 5046 1.315690 CCTACTCGTTAGCCATCCGA 58.684 55.000 0.00 0.00 0.00 4.55
4554 5048 4.327885 CTCGTTAGCCATCCGAGC 57.672 61.111 0.00 0.00 41.21 5.03
4555 5049 1.437573 CTCGTTAGCCATCCGAGCA 59.562 57.895 0.00 0.00 41.21 4.26
4556 5050 0.596083 CTCGTTAGCCATCCGAGCAG 60.596 60.000 0.00 0.00 41.21 4.24
4557 5051 2.240500 CGTTAGCCATCCGAGCAGC 61.241 63.158 0.00 0.00 0.00 5.25
4558 5052 1.144936 GTTAGCCATCCGAGCAGCT 59.855 57.895 0.00 0.00 39.37 4.24
4559 5053 0.389391 GTTAGCCATCCGAGCAGCTA 59.611 55.000 0.00 0.00 36.79 3.32
4560 5054 0.389391 TTAGCCATCCGAGCAGCTAC 59.611 55.000 0.00 0.00 37.55 3.58
4561 5055 1.464376 TAGCCATCCGAGCAGCTACC 61.464 60.000 0.00 0.00 36.79 3.18
4562 5056 3.094062 GCCATCCGAGCAGCTACCA 62.094 63.158 0.00 0.00 0.00 3.25
4563 5057 1.068753 CCATCCGAGCAGCTACCAG 59.931 63.158 0.00 0.00 0.00 4.00
4564 5058 1.680522 CCATCCGAGCAGCTACCAGT 61.681 60.000 0.00 0.00 0.00 4.00
4565 5059 0.176680 CATCCGAGCAGCTACCAGTT 59.823 55.000 0.00 0.00 0.00 3.16
4566 5060 1.409064 CATCCGAGCAGCTACCAGTTA 59.591 52.381 0.00 0.00 0.00 2.24
4567 5061 1.552578 TCCGAGCAGCTACCAGTTAA 58.447 50.000 0.00 0.00 0.00 2.01
4568 5062 1.203994 TCCGAGCAGCTACCAGTTAAC 59.796 52.381 0.00 0.00 0.00 2.01
4569 5063 1.269166 CGAGCAGCTACCAGTTAACG 58.731 55.000 0.00 0.00 0.00 3.18
4570 5064 1.135489 CGAGCAGCTACCAGTTAACGA 60.135 52.381 0.00 0.00 0.00 3.85
4571 5065 2.479730 CGAGCAGCTACCAGTTAACGAT 60.480 50.000 0.00 0.00 0.00 3.73
4572 5066 3.522553 GAGCAGCTACCAGTTAACGATT 58.477 45.455 0.00 0.00 0.00 3.34
4573 5067 3.933332 GAGCAGCTACCAGTTAACGATTT 59.067 43.478 0.00 0.00 0.00 2.17
4574 5068 4.324267 AGCAGCTACCAGTTAACGATTTT 58.676 39.130 0.00 0.00 0.00 1.82
4575 5069 4.392138 AGCAGCTACCAGTTAACGATTTTC 59.608 41.667 0.00 0.00 0.00 2.29
4576 5070 4.392138 GCAGCTACCAGTTAACGATTTTCT 59.608 41.667 0.00 0.00 0.00 2.52
4577 5071 5.446073 GCAGCTACCAGTTAACGATTTTCTC 60.446 44.000 0.00 0.00 0.00 2.87
4578 5072 5.637810 CAGCTACCAGTTAACGATTTTCTCA 59.362 40.000 0.00 0.00 0.00 3.27
4579 5073 6.147164 CAGCTACCAGTTAACGATTTTCTCAA 59.853 38.462 0.00 0.00 0.00 3.02
4580 5074 6.147328 AGCTACCAGTTAACGATTTTCTCAAC 59.853 38.462 0.00 0.00 0.00 3.18
4581 5075 6.073440 GCTACCAGTTAACGATTTTCTCAACA 60.073 38.462 0.00 0.00 0.00 3.33
4582 5076 6.687081 ACCAGTTAACGATTTTCTCAACAA 57.313 33.333 0.00 0.00 0.00 2.83
4583 5077 7.272037 ACCAGTTAACGATTTTCTCAACAAT 57.728 32.000 0.00 0.00 0.00 2.71
4584 5078 7.138736 ACCAGTTAACGATTTTCTCAACAATG 58.861 34.615 0.00 0.00 0.00 2.82
4585 5079 6.582295 CCAGTTAACGATTTTCTCAACAATGG 59.418 38.462 0.00 0.00 0.00 3.16
4586 5080 7.359595 CAGTTAACGATTTTCTCAACAATGGA 58.640 34.615 0.00 0.00 0.00 3.41
4587 5081 7.323656 CAGTTAACGATTTTCTCAACAATGGAC 59.676 37.037 0.00 0.00 0.00 4.02
4588 5082 4.766404 ACGATTTTCTCAACAATGGACC 57.234 40.909 0.00 0.00 0.00 4.46
4719 5222 2.492484 CGTACTGGGAACTACTCTGCTT 59.508 50.000 0.00 0.00 0.00 3.91
4812 5316 5.638530 AGAAATAATCTCTGGTCCCTTCC 57.361 43.478 0.00 0.00 30.46 3.46
4876 5380 2.033299 CCAACATGAACACCAGTGACAC 59.967 50.000 4.48 0.00 0.00 3.67
4890 5394 2.639839 AGTGACACATTCCTAGGCTTGT 59.360 45.455 8.59 7.26 0.00 3.16
4931 5435 7.272084 GCAAAATGTCTATCATCAACTCACAAC 59.728 37.037 0.00 0.00 35.48 3.32
4964 5468 3.461378 TGTGCTGTAGGGGTCTAGTTA 57.539 47.619 0.00 0.00 0.00 2.24
4984 5488 1.416401 ACAAGTCAACCATCCACTCGT 59.584 47.619 0.00 0.00 0.00 4.18
5068 5572 2.044946 CTGTAGGGGCCCAGTTGC 60.045 66.667 27.72 12.68 0.00 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.201436 CTCAGGTGGGAGTGACGACG 62.201 65.000 0.00 0.00 0.00 5.12
103 104 3.554731 CGATGATGACAACCATGACTCTG 59.445 47.826 0.00 0.00 35.17 3.35
111 112 1.674519 CGGGTTCGATGATGACAACCA 60.675 52.381 1.43 0.00 39.00 3.67
130 131 1.160329 GGCGGGGAGATTTGATGTCG 61.160 60.000 0.00 0.00 0.00 4.35
155 156 5.934625 GGTTAGGATTTCTCGTCATGCATAT 59.065 40.000 0.00 0.00 0.00 1.78
184 185 2.421739 CATAGGTTCCTCGGGGCG 59.578 66.667 0.00 0.00 0.00 6.13
226 227 5.643777 CCAATCCTCGTCAAGTTCATTAGTT 59.356 40.000 0.00 0.00 0.00 2.24
227 228 5.178797 CCAATCCTCGTCAAGTTCATTAGT 58.821 41.667 0.00 0.00 0.00 2.24
238 239 2.189833 CGAGTCCCAATCCTCGTCA 58.810 57.895 0.00 0.00 44.14 4.35
289 290 5.507315 GGGAAATATATTTCAACGGGCAGTG 60.507 44.000 30.09 0.00 46.03 3.66
296 297 6.241207 AGATGCGGGAAATATATTTCAACG 57.759 37.500 30.20 30.20 46.03 4.10
300 301 7.214467 TGGAAAGATGCGGGAAATATATTTC 57.786 36.000 24.27 24.27 44.08 2.17
310 311 0.911769 ACAGATGGAAAGATGCGGGA 59.088 50.000 0.00 0.00 0.00 5.14
314 315 2.352960 GTCCGAACAGATGGAAAGATGC 59.647 50.000 0.00 0.00 35.67 3.91
316 317 4.559862 AAGTCCGAACAGATGGAAAGAT 57.440 40.909 0.00 0.00 35.67 2.40
318 319 4.320494 CCAAAAGTCCGAACAGATGGAAAG 60.320 45.833 0.00 0.00 35.67 2.62
320 321 3.146066 CCAAAAGTCCGAACAGATGGAA 58.854 45.455 0.00 0.00 35.67 3.53
323 324 4.002982 TCATCCAAAAGTCCGAACAGATG 58.997 43.478 0.00 0.00 32.94 2.90
327 328 3.485463 ACTCATCCAAAAGTCCGAACA 57.515 42.857 0.00 0.00 0.00 3.18
331 332 1.200020 GCCAACTCATCCAAAAGTCCG 59.800 52.381 0.00 0.00 0.00 4.79
344 345 3.696051 TGAATTTATGCTCCAGCCAACTC 59.304 43.478 0.00 0.00 41.18 3.01
360 361 2.425312 TCGCACGGGCAATATTGAATTT 59.575 40.909 19.73 0.00 41.24 1.82
364 365 1.454201 TTTCGCACGGGCAATATTGA 58.546 45.000 19.73 0.00 41.24 2.57
370 371 0.449786 CATGTATTTCGCACGGGCAA 59.550 50.000 11.77 0.00 41.24 4.52
431 434 2.755650 TGGTTCTGCGAGTCTTTTCTC 58.244 47.619 0.00 0.00 0.00 2.87
463 467 6.468543 AGAAGGACTGGTTCTTAGCTAAAAG 58.531 40.000 7.74 0.00 29.57 2.27
472 476 3.444388 CGCTACTAGAAGGACTGGTTCTT 59.556 47.826 0.00 0.00 40.65 2.52
486 493 1.011019 CTGTCGGCGTCGCTACTAG 60.011 63.158 18.11 11.30 36.13 2.57
572 590 3.373565 CCGGCCTCTTTGGTTGGC 61.374 66.667 0.00 0.00 45.42 4.52
749 826 4.023291 TGGTTTTGGGATATTTCCTCTGC 58.977 43.478 1.99 0.00 42.20 4.26
986 1109 4.969196 CCATCATCGGGCCGTCGG 62.969 72.222 27.32 16.25 0.00 4.79
987 1110 3.911698 TCCATCATCGGGCCGTCG 61.912 66.667 27.32 17.97 0.00 5.12
988 1111 2.280186 GTCCATCATCGGGCCGTC 60.280 66.667 27.32 3.88 0.00 4.79
989 1112 4.221422 CGTCCATCATCGGGCCGT 62.221 66.667 27.32 10.72 0.00 5.68
1161 1290 2.278271 GAGTACTCGAGCAGCGCC 60.278 66.667 13.61 0.00 40.61 6.53
1359 1515 3.568853 GCTGTATGTCGTACCTCTGGTAT 59.431 47.826 0.00 0.00 40.54 2.73
1463 1619 3.415087 CAGAGGGGCAGGGGGAAG 61.415 72.222 0.00 0.00 0.00 3.46
1470 1626 6.154363 TGGATTTAAAATAAACAGAGGGGCAG 59.846 38.462 0.00 0.00 0.00 4.85
1472 1628 6.538945 TGGATTTAAAATAAACAGAGGGGC 57.461 37.500 0.00 0.00 0.00 5.80
1474 1630 9.971922 GATCATGGATTTAAAATAAACAGAGGG 57.028 33.333 0.00 0.00 0.00 4.30
1475 1631 9.971922 GGATCATGGATTTAAAATAAACAGAGG 57.028 33.333 0.00 0.00 0.00 3.69
1486 1642 4.402155 GCACTGGTGGATCATGGATTTAAA 59.598 41.667 2.84 0.00 0.00 1.52
1489 1645 2.291735 TGCACTGGTGGATCATGGATTT 60.292 45.455 2.84 0.00 0.00 2.17
1490 1646 1.285667 TGCACTGGTGGATCATGGATT 59.714 47.619 2.84 0.00 0.00 3.01
1491 1647 0.921166 TGCACTGGTGGATCATGGAT 59.079 50.000 2.84 0.00 0.00 3.41
1493 1649 1.548081 TTTGCACTGGTGGATCATGG 58.452 50.000 2.84 0.00 0.00 3.66
1537 1696 3.331150 TCACAAGATAAACGAATGCGGT 58.669 40.909 0.00 0.00 43.17 5.68
1553 1712 1.683917 CCCACCCACGATTTTTCACAA 59.316 47.619 0.00 0.00 0.00 3.33
1560 1719 2.356741 CCATAAGTCCCACCCACGATTT 60.357 50.000 0.00 0.00 0.00 2.17
1563 1722 0.545787 ACCATAAGTCCCACCCACGA 60.546 55.000 0.00 0.00 0.00 4.35
1581 1740 9.193602 CAACGTTCACAAATAAACAAATGAAAC 57.806 29.630 0.00 0.00 0.00 2.78
1584 1743 6.477033 CCCAACGTTCACAAATAAACAAATGA 59.523 34.615 0.00 0.00 0.00 2.57
1606 1765 1.001974 CACGGTTTCTCAGTGATCCCA 59.998 52.381 0.00 0.00 43.11 4.37
1725 1887 1.324383 CGGGCACAAAACCTACCTTT 58.676 50.000 0.00 0.00 0.00 3.11
1737 1899 0.749649 ATTTCAGCAAAACGGGCACA 59.250 45.000 0.00 0.00 0.00 4.57
1750 1912 4.326504 ACACCAGAGCCAAAAATTTCAG 57.673 40.909 0.00 0.00 0.00 3.02
1754 1916 5.869649 AAACTACACCAGAGCCAAAAATT 57.130 34.783 0.00 0.00 0.00 1.82
1781 1951 8.488764 GTCTTTAGTTCTTACACACTAAGCTTG 58.511 37.037 9.86 1.57 36.93 4.01
1782 1952 8.422566 AGTCTTTAGTTCTTACACACTAAGCTT 58.577 33.333 3.48 3.48 36.93 3.74
1817 1987 9.613428 ATGAGTTGGACTTATTTCATTAATCGA 57.387 29.630 0.00 0.00 0.00 3.59
1839 2009 5.588240 AGCAACATGATTGCATACAATGAG 58.412 37.500 24.86 0.00 46.59 2.90
1879 2049 9.559958 CGCTGAACTGAAACATTTTAATTAGAT 57.440 29.630 0.00 0.00 0.00 1.98
1880 2050 7.537306 GCGCTGAACTGAAACATTTTAATTAGA 59.463 33.333 0.00 0.00 0.00 2.10
1881 2051 7.325821 TGCGCTGAACTGAAACATTTTAATTAG 59.674 33.333 9.73 0.00 0.00 1.73
1882 2052 7.142021 TGCGCTGAACTGAAACATTTTAATTA 58.858 30.769 9.73 0.00 0.00 1.40
1883 2053 5.982516 TGCGCTGAACTGAAACATTTTAATT 59.017 32.000 9.73 0.00 0.00 1.40
1884 2054 5.527951 TGCGCTGAACTGAAACATTTTAAT 58.472 33.333 9.73 0.00 0.00 1.40
1885 2055 4.926244 TGCGCTGAACTGAAACATTTTAA 58.074 34.783 9.73 0.00 0.00 1.52
1886 2056 4.560136 TGCGCTGAACTGAAACATTTTA 57.440 36.364 9.73 0.00 0.00 1.52
1887 2057 3.435105 TGCGCTGAACTGAAACATTTT 57.565 38.095 9.73 0.00 0.00 1.82
1888 2058 3.254166 AGATGCGCTGAACTGAAACATTT 59.746 39.130 9.73 0.00 0.00 2.32
1889 2059 2.816087 AGATGCGCTGAACTGAAACATT 59.184 40.909 9.73 0.00 0.00 2.71
1905 2075 5.690409 CACCATCATATTTGCTCAAAGATGC 59.310 40.000 19.45 0.00 44.91 3.91
1906 2076 7.034685 TCACCATCATATTTGCTCAAAGATG 57.965 36.000 18.62 18.62 45.98 2.90
1940 2111 1.801771 TGTTACCATGTAAGCACGCAC 59.198 47.619 0.00 0.00 0.00 5.34
1942 2113 3.757745 AATGTTACCATGTAAGCACGC 57.242 42.857 0.00 0.00 0.00 5.34
2011 2185 8.638565 GTGTGATTTCGTTTTCTATGAAAATGG 58.361 33.333 18.80 10.70 43.16 3.16
2111 2285 2.195727 TCTGGAGTATGGATGGTTGCA 58.804 47.619 0.00 0.00 0.00 4.08
2125 2299 5.525012 TGAAAATGCTCGATACAATCTGGAG 59.475 40.000 0.00 0.00 0.00 3.86
2126 2300 5.427378 TGAAAATGCTCGATACAATCTGGA 58.573 37.500 0.00 0.00 0.00 3.86
2136 2310 7.318141 ACAGAAAATTCATGAAAATGCTCGAT 58.682 30.769 13.09 0.00 0.00 3.59
2187 2361 4.280425 TGCAAAGAAGAACATGGCATACAA 59.720 37.500 0.00 0.00 0.00 2.41
2281 2455 4.640364 TCCATTTGGAATTTCTTTGGTGC 58.360 39.130 0.00 0.00 42.18 5.01
2308 2482 5.189928 TCAAACTAATGGACCGCATGTAAT 58.810 37.500 0.00 0.00 0.00 1.89
2338 2512 3.230134 AGGAACCAATTAGTTGCTGCAA 58.770 40.909 11.69 11.69 45.43 4.08
2347 2521 3.694072 TCGCAATTCCAGGAACCAATTAG 59.306 43.478 3.18 0.00 0.00 1.73
2407 2581 4.608170 AAAGGAAGGGGCATGAAAGATA 57.392 40.909 0.00 0.00 0.00 1.98
2492 2926 7.166970 CACTTATGCACAAATGATAACATCAGC 59.833 37.037 0.00 0.00 43.53 4.26
2496 2930 9.709495 AAAACACTTATGCACAAATGATAACAT 57.291 25.926 0.00 0.00 38.50 2.71
2554 2988 3.885484 TCAAGCAGAAGAAAAGAAGCG 57.115 42.857 0.00 0.00 0.00 4.68
2705 3139 3.369175 TGCATGCCAAAATGGTGGTATA 58.631 40.909 16.68 0.00 41.54 1.47
2786 3228 2.436417 AGCAATACAAGTGGCAACGAT 58.564 42.857 0.00 0.00 42.51 3.73
2788 3230 2.226437 AGAAGCAATACAAGTGGCAACG 59.774 45.455 0.00 0.00 42.51 4.10
2789 3231 3.923017 AGAAGCAATACAAGTGGCAAC 57.077 42.857 0.00 0.00 0.00 4.17
2800 3242 7.334421 GTCCACAGAATGAACTTAGAAGCAATA 59.666 37.037 0.00 0.00 39.69 1.90
2812 3254 3.303495 CGTATGACGTCCACAGAATGAAC 59.697 47.826 14.12 0.00 36.71 3.18
2834 3276 3.428534 CAGCAATTAAACGTTTTCAGGCC 59.571 43.478 20.19 0.00 0.00 5.19
2840 3282 6.072342 CCCTAGTACCAGCAATTAAACGTTTT 60.072 38.462 20.19 0.00 0.00 2.43
2877 3319 5.699097 TTGAGCCAGTTAACACCATTAAC 57.301 39.130 8.61 2.05 35.66 2.01
2883 3325 4.097286 TGAACTTTTGAGCCAGTTAACACC 59.903 41.667 8.61 0.00 33.22 4.16
2909 3351 8.450578 TCTACATATCCACATTCAACAAATCC 57.549 34.615 0.00 0.00 0.00 3.01
2957 3399 6.747414 ATAGAGATGCACCACCACTTATAA 57.253 37.500 0.00 0.00 0.00 0.98
3033 3475 8.861086 TGAAGAAAGTATCAGTTCTAGACAGTT 58.139 33.333 0.00 0.00 32.90 3.16
3196 3642 6.042777 TCACAGAAATCTAGGATTACAAGCG 58.957 40.000 0.00 0.00 0.00 4.68
3214 3672 8.328758 AGGAAAAATACCAAGATACATCACAGA 58.671 33.333 0.00 0.00 0.00 3.41
3232 3691 4.889995 GCACCTGGAGCTATAAGGAAAAAT 59.110 41.667 14.19 0.00 34.97 1.82
3241 3700 0.465705 GCACTGCACCTGGAGCTATA 59.534 55.000 16.96 0.00 36.94 1.31
3266 3725 6.073447 TGGCTCCCTGATTATACAGAAAAA 57.927 37.500 0.00 0.00 39.94 1.94
3267 3726 5.708736 TGGCTCCCTGATTATACAGAAAA 57.291 39.130 0.00 0.00 39.94 2.29
3288 3747 7.701445 TGAACAAAAAGGCAAAATTGGTTATG 58.299 30.769 0.00 0.00 0.00 1.90
3295 3754 4.854173 ACCCTGAACAAAAAGGCAAAATT 58.146 34.783 0.00 0.00 31.71 1.82
3332 3795 7.576287 CGGTACAGAAGTAGAAAGTATTCCACA 60.576 40.741 0.00 0.00 36.12 4.17
3416 3881 4.382685 CCAGTGGTTAGCGAGGAAAATAGA 60.383 45.833 0.00 0.00 0.00 1.98
3428 3893 6.016443 ACGTAAGATATAGTCCAGTGGTTAGC 60.016 42.308 9.54 0.64 43.62 3.09
3443 3908 8.035394 ACAGATGTCAACTTGAACGTAAGATAT 58.965 33.333 5.10 0.00 43.62 1.63
3452 3917 4.335315 TCCACAACAGATGTCAACTTGAAC 59.665 41.667 0.00 0.00 41.46 3.18
3497 3964 5.163723 TGCTCAGTATCACTGCTAAAATTGC 60.164 40.000 1.34 0.00 45.54 3.56
3504 3971 3.243670 GCATCTGCTCAGTATCACTGCTA 60.244 47.826 1.34 0.00 45.54 3.49
3520 3987 5.091261 AGGTAAGTGTTAGAAGGCATCTG 57.909 43.478 1.83 0.00 39.30 2.90
3521 3988 5.763876 AAGGTAAGTGTTAGAAGGCATCT 57.236 39.130 0.00 0.00 42.48 2.90
3603 4071 4.640364 TCGTTGCATATGAGCCATAATGA 58.360 39.130 6.97 0.00 29.74 2.57
3667 4139 3.002656 CAGTAACAAGTGACAGCCAACAG 59.997 47.826 0.00 0.00 0.00 3.16
3710 4182 6.753279 ACTACACAATGCATATTTTCACATGC 59.247 34.615 0.00 0.00 46.21 4.06
3725 4198 4.202101 TGCCAAAAGTTCCACTACACAATG 60.202 41.667 0.00 0.00 0.00 2.82
3726 4199 3.957497 TGCCAAAAGTTCCACTACACAAT 59.043 39.130 0.00 0.00 0.00 2.71
3730 4203 2.295909 GCATGCCAAAAGTTCCACTACA 59.704 45.455 6.36 0.00 0.00 2.74
3844 4317 1.154035 GCGCAAAAGAATGGGGACG 60.154 57.895 0.30 0.00 34.13 4.79
3928 4401 8.958119 TCATGAAACAAAACTGTAACTAGAGT 57.042 30.769 0.00 0.00 0.00 3.24
3962 4436 4.985409 GGAAACGCCAATAGATACTCAGAG 59.015 45.833 0.00 0.00 36.34 3.35
3965 4439 5.353394 AAGGAAACGCCAATAGATACTCA 57.647 39.130 0.00 0.00 40.02 3.41
3974 4448 4.083696 CGTTAGTACAAAGGAAACGCCAAT 60.084 41.667 0.00 0.00 40.02 3.16
3975 4449 3.248125 CGTTAGTACAAAGGAAACGCCAA 59.752 43.478 0.00 0.00 40.02 4.52
3990 4464 5.681437 GCCATCATCCAGAAAGACGTTAGTA 60.681 44.000 0.00 0.00 0.00 1.82
3991 4465 4.759782 CCATCATCCAGAAAGACGTTAGT 58.240 43.478 0.00 0.00 0.00 2.24
3992 4466 3.557595 GCCATCATCCAGAAAGACGTTAG 59.442 47.826 0.00 0.00 0.00 2.34
3999 4473 2.431954 ACCTGCCATCATCCAGAAAG 57.568 50.000 0.00 0.00 0.00 2.62
4004 4478 1.634973 TCTCAAACCTGCCATCATCCA 59.365 47.619 0.00 0.00 0.00 3.41
4135 4612 2.037136 CAAGCGAGGTTCCCTGCTG 61.037 63.158 6.26 0.00 37.78 4.41
4203 4692 2.170770 GAAACACGGACAAACACAACG 58.829 47.619 0.00 0.00 0.00 4.10
4241 4730 0.741221 GGATCCGTTCAGCACCTCAC 60.741 60.000 0.00 0.00 0.00 3.51
4256 4745 2.124278 GAAGGGGGCGTTGGGATC 60.124 66.667 0.00 0.00 0.00 3.36
4397 4891 4.524316 TGAATTCTTGAACAGGGCAATG 57.476 40.909 7.05 0.00 0.00 2.82
4398 4892 4.161001 GGATGAATTCTTGAACAGGGCAAT 59.839 41.667 7.05 0.00 0.00 3.56
4399 4893 3.511146 GGATGAATTCTTGAACAGGGCAA 59.489 43.478 7.05 0.00 0.00 4.52
4400 4894 3.091545 GGATGAATTCTTGAACAGGGCA 58.908 45.455 7.05 0.00 0.00 5.36
4401 4895 2.098117 CGGATGAATTCTTGAACAGGGC 59.902 50.000 7.05 0.00 0.00 5.19
4402 4896 3.609853 TCGGATGAATTCTTGAACAGGG 58.390 45.455 7.05 0.00 0.00 4.45
4403 4897 5.824904 AATCGGATGAATTCTTGAACAGG 57.175 39.130 7.05 0.00 0.00 4.00
4404 4898 7.148255 TGGTTAATCGGATGAATTCTTGAACAG 60.148 37.037 7.05 0.00 0.00 3.16
4405 4899 6.657117 TGGTTAATCGGATGAATTCTTGAACA 59.343 34.615 7.05 0.00 0.00 3.18
4406 4900 7.083875 TGGTTAATCGGATGAATTCTTGAAC 57.916 36.000 7.05 0.68 0.00 3.18
4407 4901 6.884295 ACTGGTTAATCGGATGAATTCTTGAA 59.116 34.615 7.05 0.00 0.00 2.69
4408 4902 6.414732 ACTGGTTAATCGGATGAATTCTTGA 58.585 36.000 7.05 0.00 0.00 3.02
4409 4903 6.683974 ACTGGTTAATCGGATGAATTCTTG 57.316 37.500 7.05 0.00 0.00 3.02
4410 4904 8.674607 GTTAACTGGTTAATCGGATGAATTCTT 58.325 33.333 7.05 0.00 37.37 2.52
4411 4905 8.047310 AGTTAACTGGTTAATCGGATGAATTCT 58.953 33.333 7.48 0.00 37.37 2.40
4412 4906 8.209917 AGTTAACTGGTTAATCGGATGAATTC 57.790 34.615 7.48 0.00 37.37 2.17
4413 4907 8.458843 CAAGTTAACTGGTTAATCGGATGAATT 58.541 33.333 9.34 0.00 37.37 2.17
4414 4908 7.415206 GCAAGTTAACTGGTTAATCGGATGAAT 60.415 37.037 9.34 0.00 37.37 2.57
4415 4909 6.128117 GCAAGTTAACTGGTTAATCGGATGAA 60.128 38.462 9.34 0.00 37.37 2.57
4416 4910 5.353123 GCAAGTTAACTGGTTAATCGGATGA 59.647 40.000 9.34 0.00 37.37 2.92
4417 4911 5.448632 GGCAAGTTAACTGGTTAATCGGATG 60.449 44.000 9.34 0.03 37.37 3.51
4418 4912 4.638865 GGCAAGTTAACTGGTTAATCGGAT 59.361 41.667 9.34 0.00 37.37 4.18
4419 4913 4.004982 GGCAAGTTAACTGGTTAATCGGA 58.995 43.478 9.34 0.00 37.37 4.55
4420 4914 3.181514 CGGCAAGTTAACTGGTTAATCGG 60.182 47.826 9.34 0.00 37.37 4.18
4421 4915 3.680937 TCGGCAAGTTAACTGGTTAATCG 59.319 43.478 9.34 7.09 37.37 3.34
4422 4916 5.813080 ATCGGCAAGTTAACTGGTTAATC 57.187 39.130 9.34 0.00 37.37 1.75
4423 4917 7.690952 TTAATCGGCAAGTTAACTGGTTAAT 57.309 32.000 9.34 0.00 37.37 1.40
4424 4918 7.148205 GGATTAATCGGCAAGTTAACTGGTTAA 60.148 37.037 9.34 9.79 33.48 2.01
4425 4919 6.316890 GGATTAATCGGCAAGTTAACTGGTTA 59.683 38.462 9.34 0.65 0.00 2.85
4426 4920 5.124936 GGATTAATCGGCAAGTTAACTGGTT 59.875 40.000 9.34 1.66 0.00 3.67
4427 4921 4.638865 GGATTAATCGGCAAGTTAACTGGT 59.361 41.667 9.34 0.00 0.00 4.00
4428 4922 4.036380 GGGATTAATCGGCAAGTTAACTGG 59.964 45.833 9.34 7.35 0.00 4.00
4429 4923 4.881850 AGGGATTAATCGGCAAGTTAACTG 59.118 41.667 9.34 4.88 0.00 3.16
4430 4924 5.112129 AGGGATTAATCGGCAAGTTAACT 57.888 39.130 9.32 1.12 0.00 2.24
4431 4925 6.053650 AGTAGGGATTAATCGGCAAGTTAAC 58.946 40.000 9.32 0.00 0.00 2.01
4432 4926 6.126997 TGAGTAGGGATTAATCGGCAAGTTAA 60.127 38.462 9.32 0.00 0.00 2.01
4433 4927 5.364446 TGAGTAGGGATTAATCGGCAAGTTA 59.636 40.000 9.32 0.00 0.00 2.24
4434 4928 4.163458 TGAGTAGGGATTAATCGGCAAGTT 59.837 41.667 9.32 0.00 0.00 2.66
4435 4929 3.709653 TGAGTAGGGATTAATCGGCAAGT 59.290 43.478 9.32 0.00 0.00 3.16
4436 4930 4.336889 TGAGTAGGGATTAATCGGCAAG 57.663 45.455 9.32 0.00 0.00 4.01
4437 4931 4.974645 ATGAGTAGGGATTAATCGGCAA 57.025 40.909 9.32 0.00 0.00 4.52
4438 4932 4.466370 CCTATGAGTAGGGATTAATCGGCA 59.534 45.833 9.32 2.09 43.26 5.69
4439 4933 5.012328 CCTATGAGTAGGGATTAATCGGC 57.988 47.826 9.32 0.00 43.26 5.54
4450 4944 2.231529 CTCGGTGACCCTATGAGTAGG 58.768 57.143 0.00 0.00 46.03 3.18
4451 4945 2.933573 ACTCGGTGACCCTATGAGTAG 58.066 52.381 7.93 0.00 38.09 2.57
4452 4946 3.746751 GCTACTCGGTGACCCTATGAGTA 60.747 52.174 13.87 13.87 40.22 2.59
4453 4947 2.933573 CTACTCGGTGACCCTATGAGT 58.066 52.381 13.18 13.18 42.22 3.41
4454 4948 1.609555 GCTACTCGGTGACCCTATGAG 59.390 57.143 0.00 0.00 0.00 2.90
4455 4949 1.688772 GCTACTCGGTGACCCTATGA 58.311 55.000 0.00 0.00 0.00 2.15
4456 4950 0.674534 GGCTACTCGGTGACCCTATG 59.325 60.000 0.00 0.00 0.00 2.23
4457 4951 0.822532 CGGCTACTCGGTGACCCTAT 60.823 60.000 0.00 0.00 0.00 2.57
4458 4952 1.452651 CGGCTACTCGGTGACCCTA 60.453 63.158 0.00 0.00 0.00 3.53
4459 4953 2.569218 ATCGGCTACTCGGTGACCCT 62.569 60.000 0.00 0.00 0.00 4.34
4460 4954 0.820891 TATCGGCTACTCGGTGACCC 60.821 60.000 0.00 0.00 0.00 4.46
4461 4955 1.027357 TTATCGGCTACTCGGTGACC 58.973 55.000 0.00 0.00 0.00 4.02
4462 4956 2.457970 GTTTATCGGCTACTCGGTGAC 58.542 52.381 0.00 0.00 0.00 3.67
4463 4957 1.406539 GGTTTATCGGCTACTCGGTGA 59.593 52.381 0.00 0.00 0.00 4.02
4464 4958 1.849097 GGTTTATCGGCTACTCGGTG 58.151 55.000 0.00 0.00 0.00 4.94
4465 4959 0.383231 CGGTTTATCGGCTACTCGGT 59.617 55.000 0.00 0.00 0.00 4.69
4466 4960 0.664761 TCGGTTTATCGGCTACTCGG 59.335 55.000 0.00 0.00 0.00 4.63
4467 4961 2.480224 TTCGGTTTATCGGCTACTCG 57.520 50.000 0.00 0.00 0.00 4.18
4468 4962 5.555818 CGATTTTTCGGTTTATCGGCTACTC 60.556 44.000 0.00 0.00 36.99 2.59
4469 4963 4.269363 CGATTTTTCGGTTTATCGGCTACT 59.731 41.667 0.00 0.00 36.99 2.57
4470 4964 4.033243 ACGATTTTTCGGTTTATCGGCTAC 59.967 41.667 0.00 0.00 42.95 3.58
4471 4965 4.183101 ACGATTTTTCGGTTTATCGGCTA 58.817 39.130 0.00 0.00 42.95 3.93
4472 4966 3.004862 ACGATTTTTCGGTTTATCGGCT 58.995 40.909 0.00 0.00 42.95 5.52
4473 4967 3.348309 GACGATTTTTCGGTTTATCGGC 58.652 45.455 0.00 0.00 42.95 5.54
4474 4968 3.542680 CGGACGATTTTTCGGTTTATCGG 60.543 47.826 0.00 0.00 42.95 4.18
4475 4969 3.304026 TCGGACGATTTTTCGGTTTATCG 59.696 43.478 0.00 0.00 43.92 2.92
4476 4970 4.845621 TCGGACGATTTTTCGGTTTATC 57.154 40.909 0.00 0.00 37.45 1.75
4477 4971 5.806366 AATCGGACGATTTTTCGGTTTAT 57.194 34.783 13.64 0.00 41.55 1.40
4478 4972 6.718454 TTAATCGGACGATTTTTCGGTTTA 57.282 33.333 22.82 1.52 41.55 2.01
4479 4973 5.610235 TTAATCGGACGATTTTTCGGTTT 57.390 34.783 22.82 1.50 41.55 3.27
4480 4974 5.806366 ATTAATCGGACGATTTTTCGGTT 57.194 34.783 22.82 2.17 41.55 4.44
4481 4975 5.352016 TCAATTAATCGGACGATTTTTCGGT 59.648 36.000 22.82 2.07 41.55 4.69
4482 4976 5.802064 TCAATTAATCGGACGATTTTTCGG 58.198 37.500 22.82 10.91 41.55 4.30
4483 4977 7.892445 AATCAATTAATCGGACGATTTTTCG 57.108 32.000 22.82 11.29 41.55 3.46
4487 4981 9.677567 CCATTTAATCAATTAATCGGACGATTT 57.322 29.630 22.82 5.63 41.55 2.17
4488 4982 7.807907 GCCATTTAATCAATTAATCGGACGATT 59.192 33.333 21.60 21.60 45.58 3.34
4489 4983 7.305474 GCCATTTAATCAATTAATCGGACGAT 58.695 34.615 0.65 0.65 32.78 3.73
4490 4984 6.293735 GGCCATTTAATCAATTAATCGGACGA 60.294 38.462 0.00 0.00 32.78 4.20
4491 4985 5.856455 GGCCATTTAATCAATTAATCGGACG 59.144 40.000 0.00 0.00 32.78 4.79
4492 4986 5.856455 CGGCCATTTAATCAATTAATCGGAC 59.144 40.000 2.24 9.25 32.60 4.79
4493 4987 5.765677 TCGGCCATTTAATCAATTAATCGGA 59.234 36.000 2.24 0.00 32.78 4.55
4494 4988 6.007936 TCGGCCATTTAATCAATTAATCGG 57.992 37.500 2.24 2.40 32.78 4.18
4495 4989 9.619316 TTAATCGGCCATTTAATCAATTAATCG 57.381 29.630 2.24 0.00 32.78 3.34
4497 4991 9.705290 GGTTAATCGGCCATTTAATCAATTAAT 57.295 29.630 2.24 0.00 32.78 1.40
4498 4992 7.863375 CGGTTAATCGGCCATTTAATCAATTAA 59.137 33.333 14.69 4.03 0.00 1.40
4499 4993 7.228906 TCGGTTAATCGGCCATTTAATCAATTA 59.771 33.333 8.52 0.00 0.00 1.40
4500 4994 6.039941 TCGGTTAATCGGCCATTTAATCAATT 59.960 34.615 8.52 0.00 0.00 2.32
4501 4995 5.533154 TCGGTTAATCGGCCATTTAATCAAT 59.467 36.000 8.52 0.00 0.00 2.57
4502 4996 4.882427 TCGGTTAATCGGCCATTTAATCAA 59.118 37.500 8.52 0.00 0.00 2.57
4503 4997 4.452825 TCGGTTAATCGGCCATTTAATCA 58.547 39.130 8.52 3.55 0.00 2.57
4504 4998 5.622770 ATCGGTTAATCGGCCATTTAATC 57.377 39.130 8.52 5.59 0.00 1.75
4505 4999 7.513371 TTAATCGGTTAATCGGCCATTTAAT 57.487 32.000 8.52 0.00 0.00 1.40
4506 5000 6.939132 TTAATCGGTTAATCGGCCATTTAA 57.061 33.333 8.52 3.07 0.00 1.52
4507 5001 7.136289 GATTAATCGGTTAATCGGCCATTTA 57.864 36.000 21.90 0.00 43.53 1.40
4508 5002 6.009115 GATTAATCGGTTAATCGGCCATTT 57.991 37.500 21.90 0.00 43.53 2.32
4509 5003 5.622770 GATTAATCGGTTAATCGGCCATT 57.377 39.130 21.90 3.64 43.53 3.16
4517 5011 5.541484 ACGAGTAGGGGATTAATCGGTTAAT 59.459 40.000 13.44 13.44 43.20 1.40
4518 5012 4.895297 ACGAGTAGGGGATTAATCGGTTAA 59.105 41.667 2.81 2.81 43.20 2.01
4519 5013 4.473444 ACGAGTAGGGGATTAATCGGTTA 58.527 43.478 9.32 0.00 43.20 2.85
4520 5014 3.303049 ACGAGTAGGGGATTAATCGGTT 58.697 45.455 9.32 0.00 43.20 4.44
4521 5015 2.954792 ACGAGTAGGGGATTAATCGGT 58.045 47.619 9.32 0.00 43.20 4.69
4522 5016 4.617762 GCTAACGAGTAGGGGATTAATCGG 60.618 50.000 9.32 0.00 43.20 4.18
4523 5017 4.483311 GCTAACGAGTAGGGGATTAATCG 58.517 47.826 9.32 0.00 44.13 3.34
4524 5018 4.282703 TGGCTAACGAGTAGGGGATTAATC 59.717 45.833 6.93 6.93 0.00 1.75
4525 5019 4.228824 TGGCTAACGAGTAGGGGATTAAT 58.771 43.478 0.00 0.00 0.00 1.40
4526 5020 3.645434 TGGCTAACGAGTAGGGGATTAA 58.355 45.455 0.00 0.00 0.00 1.40
4527 5021 3.317455 TGGCTAACGAGTAGGGGATTA 57.683 47.619 0.00 0.00 0.00 1.75
4528 5022 2.170012 TGGCTAACGAGTAGGGGATT 57.830 50.000 0.00 0.00 0.00 3.01
4529 5023 2.249139 GATGGCTAACGAGTAGGGGAT 58.751 52.381 0.00 0.00 0.00 3.85
4530 5024 1.700955 GATGGCTAACGAGTAGGGGA 58.299 55.000 0.00 0.00 0.00 4.81
4531 5025 0.680061 GGATGGCTAACGAGTAGGGG 59.320 60.000 0.00 0.00 0.00 4.79
4532 5026 0.314302 CGGATGGCTAACGAGTAGGG 59.686 60.000 0.00 0.00 0.00 3.53
4533 5027 1.267261 CTCGGATGGCTAACGAGTAGG 59.733 57.143 16.00 0.00 46.43 3.18
4534 5028 2.690173 CTCGGATGGCTAACGAGTAG 57.310 55.000 16.00 0.00 46.43 2.57
4538 5032 1.437573 CTGCTCGGATGGCTAACGA 59.562 57.895 0.00 0.74 35.14 3.85
4539 5033 2.240500 GCTGCTCGGATGGCTAACG 61.241 63.158 0.00 0.00 0.00 3.18
4540 5034 0.389391 TAGCTGCTCGGATGGCTAAC 59.611 55.000 4.91 0.00 34.86 2.34
4541 5035 0.389391 GTAGCTGCTCGGATGGCTAA 59.611 55.000 4.91 0.00 38.70 3.09
4542 5036 1.464376 GGTAGCTGCTCGGATGGCTA 61.464 60.000 4.91 0.00 36.40 3.93
4543 5037 2.801631 GGTAGCTGCTCGGATGGCT 61.802 63.158 4.91 0.00 38.62 4.75
4544 5038 2.280457 GGTAGCTGCTCGGATGGC 60.280 66.667 4.91 0.00 0.00 4.40
4545 5039 1.068753 CTGGTAGCTGCTCGGATGG 59.931 63.158 4.91 0.00 0.00 3.51
4546 5040 0.176680 AACTGGTAGCTGCTCGGATG 59.823 55.000 4.91 0.00 0.00 3.51
4547 5041 1.776662 TAACTGGTAGCTGCTCGGAT 58.223 50.000 4.91 0.00 0.00 4.18
4548 5042 1.203994 GTTAACTGGTAGCTGCTCGGA 59.796 52.381 4.91 0.00 0.00 4.55
4549 5043 1.641577 GTTAACTGGTAGCTGCTCGG 58.358 55.000 4.91 0.00 0.00 4.63
4550 5044 1.135489 TCGTTAACTGGTAGCTGCTCG 60.135 52.381 4.91 0.00 0.00 5.03
4551 5045 2.649331 TCGTTAACTGGTAGCTGCTC 57.351 50.000 4.91 0.00 0.00 4.26
4552 5046 3.611766 AATCGTTAACTGGTAGCTGCT 57.388 42.857 7.57 7.57 0.00 4.24
4553 5047 4.392138 AGAAAATCGTTAACTGGTAGCTGC 59.608 41.667 3.71 0.00 0.00 5.25
4554 5048 5.637810 TGAGAAAATCGTTAACTGGTAGCTG 59.362 40.000 3.71 0.00 0.00 4.24
4555 5049 5.790593 TGAGAAAATCGTTAACTGGTAGCT 58.209 37.500 3.71 0.00 0.00 3.32
4556 5050 6.073440 TGTTGAGAAAATCGTTAACTGGTAGC 60.073 38.462 3.71 0.00 0.00 3.58
4557 5051 7.416154 TGTTGAGAAAATCGTTAACTGGTAG 57.584 36.000 3.71 0.00 0.00 3.18
4558 5052 7.789273 TTGTTGAGAAAATCGTTAACTGGTA 57.211 32.000 3.71 0.00 0.00 3.25
4559 5053 6.687081 TTGTTGAGAAAATCGTTAACTGGT 57.313 33.333 3.71 0.00 0.00 4.00
4560 5054 6.582295 CCATTGTTGAGAAAATCGTTAACTGG 59.418 38.462 3.71 0.00 0.00 4.00
4561 5055 7.323656 GTCCATTGTTGAGAAAATCGTTAACTG 59.676 37.037 3.71 0.00 0.00 3.16
4562 5056 7.360361 GTCCATTGTTGAGAAAATCGTTAACT 58.640 34.615 3.71 0.00 0.00 2.24
4563 5057 6.581166 GGTCCATTGTTGAGAAAATCGTTAAC 59.419 38.462 0.00 0.00 0.00 2.01
4564 5058 6.263392 TGGTCCATTGTTGAGAAAATCGTTAA 59.737 34.615 0.00 0.00 0.00 2.01
4565 5059 5.765677 TGGTCCATTGTTGAGAAAATCGTTA 59.234 36.000 0.00 0.00 0.00 3.18
4566 5060 4.582656 TGGTCCATTGTTGAGAAAATCGTT 59.417 37.500 0.00 0.00 0.00 3.85
4567 5061 4.141287 TGGTCCATTGTTGAGAAAATCGT 58.859 39.130 0.00 0.00 0.00 3.73
4568 5062 4.764679 TGGTCCATTGTTGAGAAAATCG 57.235 40.909 0.00 0.00 0.00 3.34
4569 5063 6.956299 CAATGGTCCATTGTTGAGAAAATC 57.044 37.500 29.46 0.00 44.12 2.17
4581 5075 9.159254 TCAGAGTCTATATAACAATGGTCCATT 57.841 33.333 11.59 11.59 34.04 3.16
4582 5076 8.727100 TCAGAGTCTATATAACAATGGTCCAT 57.273 34.615 0.00 0.00 0.00 3.41
4583 5077 8.004801 TCTCAGAGTCTATATAACAATGGTCCA 58.995 37.037 0.00 0.00 0.00 4.02
4584 5078 8.410673 TCTCAGAGTCTATATAACAATGGTCC 57.589 38.462 0.00 0.00 0.00 4.46
4600 5094 2.233431 AGCCTGTCACAATCTCAGAGTC 59.767 50.000 0.00 0.00 0.00 3.36
4602 5096 2.233186 TCAGCCTGTCACAATCTCAGAG 59.767 50.000 0.00 0.00 0.00 3.35
4603 5097 2.028658 GTCAGCCTGTCACAATCTCAGA 60.029 50.000 0.00 0.00 0.00 3.27
4697 5194 1.817447 GCAGAGTAGTTCCCAGTACGT 59.183 52.381 0.00 0.00 34.37 3.57
4719 5222 2.277858 AAAAACACGGCACACCCAA 58.722 47.368 0.00 0.00 0.00 4.12
4751 5255 3.118298 TCATGCTTCAGCTACTGCCATAA 60.118 43.478 0.00 0.00 42.66 1.90
4803 5307 5.429130 CTTCACATAAACTAGGAAGGGACC 58.571 45.833 0.00 0.00 33.17 4.46
4812 5316 6.349300 ACATACCTGCCTTCACATAAACTAG 58.651 40.000 0.00 0.00 0.00 2.57
4876 5380 5.452078 TTGAAACAACAAGCCTAGGAATG 57.548 39.130 14.75 12.78 0.00 2.67
4890 5394 8.266392 AGACATTTTGCTGAAAATTGAAACAA 57.734 26.923 9.40 0.00 39.34 2.83
4931 5435 0.032678 CAGCACATACGCCCCTCTAG 59.967 60.000 0.00 0.00 0.00 2.43
4964 5468 1.416401 ACGAGTGGATGGTTGACTTGT 59.584 47.619 0.00 0.00 30.75 3.16
4984 5488 6.382919 AAAAAGTAGGGCATGTCCTAGTTA 57.617 37.500 35.67 14.11 46.68 2.24
5009 5513 2.272146 CGCAACTGGGGCCACTAT 59.728 61.111 6.53 0.00 0.00 2.12
5043 5547 2.184579 GCCCCTACAGACTGACGC 59.815 66.667 10.08 0.00 0.00 5.19
5048 5552 1.161113 AACTGGGCCCCTACAGACT 59.839 57.895 22.27 0.00 38.09 3.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.