Multiple sequence alignment - TraesCS3A01G094700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G094700 chr3A 100.000 3286 0 0 1 3286 60470506 60473791 0.000000e+00 6069.0
1 TraesCS3A01G094700 chr3A 90.958 2046 123 21 702 2713 60443288 60441271 0.000000e+00 2697.0
2 TraesCS3A01G094700 chr3A 88.168 262 30 1 5 265 740877090 740877351 9.830000e-81 311.0
3 TraesCS3A01G094700 chr3A 100.000 102 0 0 3544 3645 60474049 60474150 4.800000e-44 189.0
4 TraesCS3A01G094700 chr3D 92.043 2036 118 17 701 2705 48348354 48350376 0.000000e+00 2822.0
5 TraesCS3A01G094700 chr3D 90.293 1978 116 25 734 2652 48252569 48250609 0.000000e+00 2519.0
6 TraesCS3A01G094700 chr3D 84.615 702 87 12 5 691 23168592 23169287 0.000000e+00 678.0
7 TraesCS3A01G094700 chr3D 89.827 521 49 2 2057 2573 48295872 48295352 0.000000e+00 665.0
8 TraesCS3A01G094700 chr3D 85.993 307 27 5 765 1071 48283668 48283958 7.600000e-82 315.0
9 TraesCS3A01G094700 chr3D 91.667 192 16 0 2953 3144 48350295 48350486 2.160000e-67 267.0
10 TraesCS3A01G094700 chr3D 92.157 102 8 0 3544 3645 48350731 48350832 1.050000e-30 145.0
11 TraesCS3A01G094700 chr3B 92.627 1831 114 16 810 2632 76114887 76116704 0.000000e+00 2614.0
12 TraesCS3A01G094700 chr3B 90.755 1471 97 18 702 2148 75958583 75957128 0.000000e+00 1927.0
13 TraesCS3A01G094700 chr3B 93.654 520 26 3 2173 2688 75957134 75956618 0.000000e+00 771.0
14 TraesCS3A01G094700 chr3B 91.129 124 10 1 701 823 76114748 76114871 2.250000e-37 167.0
15 TraesCS3A01G094700 chr2D 85.570 693 78 12 2 691 118407459 118408132 0.000000e+00 706.0
16 TraesCS3A01G094700 chr2D 84.844 706 86 11 5 693 129835453 129834752 0.000000e+00 691.0
17 TraesCS3A01G094700 chr2D 84.000 700 75 8 5 674 340281388 340282080 3.970000e-179 638.0
18 TraesCS3A01G094700 chr2D 83.095 698 91 19 5 691 11026177 11025496 8.650000e-171 610.0
19 TraesCS3A01G094700 chr5D 84.604 695 83 14 5 693 208514537 208513861 0.000000e+00 669.0
20 TraesCS3A01G094700 chr5D 83.101 716 88 9 5 691 460450722 460451433 4.000000e-174 621.0
21 TraesCS3A01G094700 chr5D 82.479 702 95 21 5 693 214643215 214642529 1.130000e-164 590.0
22 TraesCS3A01G094700 chr5D 89.453 256 26 1 5 259 312381655 312381910 4.540000e-84 322.0
23 TraesCS3A01G094700 chr5D 76.159 151 33 3 2302 2452 380076340 380076193 3.900000e-10 76.8
24 TraesCS3A01G094700 chr1D 82.910 708 92 20 5 695 425532282 425532977 8.650000e-171 610.0
25 TraesCS3A01G094700 chr1D 92.562 242 18 0 2 243 411379235 411378994 7.490000e-92 348.0
26 TraesCS3A01G094700 chr1D 89.394 264 27 1 5 267 77351075 77351338 7.540000e-87 331.0
27 TraesCS3A01G094700 chr1D 75.610 615 115 28 1132 1734 337217326 337217917 4.640000e-69 272.0
28 TraesCS3A01G094700 chr1A 82.734 695 105 12 5 691 571723230 571723917 4.030000e-169 604.0
29 TraesCS3A01G094700 chr1A 87.500 56 5 2 2734 2788 107521156 107521102 3.040000e-06 63.9
30 TraesCS3A01G094700 chr7B 79.222 823 139 27 1132 1947 682283706 682282909 8.900000e-151 544.0
31 TraesCS3A01G094700 chr6A 79.222 823 139 27 1132 1947 205114773 205115570 8.900000e-151 544.0
32 TraesCS3A01G094700 chr7D 85.089 503 49 17 2 495 126464728 126465213 1.180000e-134 490.0
33 TraesCS3A01G094700 chr7D 82.353 119 15 5 2725 2839 198620903 198621019 8.330000e-17 99.0
34 TraesCS3A01G094700 chr6B 76.306 823 141 43 1132 1947 255211338 255210563 1.230000e-104 390.0
35 TraesCS3A01G094700 chr6B 92.500 40 3 0 2734 2773 578483529 578483490 1.410000e-04 58.4
36 TraesCS3A01G094700 chr6D 77.512 627 120 16 2017 2631 143091407 143090790 1.240000e-94 357.0
37 TraesCS3A01G094700 chr6D 76.046 693 137 24 1130 1806 142989963 142989284 2.100000e-87 333.0
38 TraesCS3A01G094700 chr6D 87.361 269 33 1 4 271 407930236 407929968 1.270000e-79 307.0
39 TraesCS3A01G094700 chr4D 91.489 235 20 0 14 248 47691572 47691338 1.260000e-84 324.0
40 TraesCS3A01G094700 chr5A 76.560 529 95 20 2017 2526 520208754 520208236 2.790000e-66 263.0
41 TraesCS3A01G094700 chr5A 74.639 623 117 31 1127 1733 520209662 520209065 1.690000e-58 237.0
42 TraesCS3A01G094700 chr5A 100.000 28 0 0 2860 2887 666823255 666823228 7.000000e-03 52.8
43 TraesCS3A01G094700 chr5B 75.758 528 101 17 2017 2526 491083197 491082679 1.310000e-59 241.0
44 TraesCS3A01G094700 chrUn 71.705 516 133 12 2014 2521 24901333 24901843 8.210000e-27 132.0
45 TraesCS3A01G094700 chr2B 78.010 191 32 6 2715 2905 760152345 760152525 1.070000e-20 111.0
46 TraesCS3A01G094700 chr2A 76.289 194 38 6 2723 2910 751762829 751762638 3.000000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G094700 chr3A 60470506 60474150 3644 False 3129.0 6069 100.000000 1 3645 2 chr3A.!!$F2 3644
1 TraesCS3A01G094700 chr3A 60441271 60443288 2017 True 2697.0 2697 90.958000 702 2713 1 chr3A.!!$R1 2011
2 TraesCS3A01G094700 chr3D 48250609 48252569 1960 True 2519.0 2519 90.293000 734 2652 1 chr3D.!!$R1 1918
3 TraesCS3A01G094700 chr3D 48348354 48350832 2478 False 1078.0 2822 91.955667 701 3645 3 chr3D.!!$F3 2944
4 TraesCS3A01G094700 chr3D 23168592 23169287 695 False 678.0 678 84.615000 5 691 1 chr3D.!!$F1 686
5 TraesCS3A01G094700 chr3D 48295352 48295872 520 True 665.0 665 89.827000 2057 2573 1 chr3D.!!$R2 516
6 TraesCS3A01G094700 chr3B 76114748 76116704 1956 False 1390.5 2614 91.878000 701 2632 2 chr3B.!!$F1 1931
7 TraesCS3A01G094700 chr3B 75956618 75958583 1965 True 1349.0 1927 92.204500 702 2688 2 chr3B.!!$R1 1986
8 TraesCS3A01G094700 chr2D 118407459 118408132 673 False 706.0 706 85.570000 2 691 1 chr2D.!!$F1 689
9 TraesCS3A01G094700 chr2D 129834752 129835453 701 True 691.0 691 84.844000 5 693 1 chr2D.!!$R2 688
10 TraesCS3A01G094700 chr2D 340281388 340282080 692 False 638.0 638 84.000000 5 674 1 chr2D.!!$F2 669
11 TraesCS3A01G094700 chr2D 11025496 11026177 681 True 610.0 610 83.095000 5 691 1 chr2D.!!$R1 686
12 TraesCS3A01G094700 chr5D 208513861 208514537 676 True 669.0 669 84.604000 5 693 1 chr5D.!!$R1 688
13 TraesCS3A01G094700 chr5D 460450722 460451433 711 False 621.0 621 83.101000 5 691 1 chr5D.!!$F2 686
14 TraesCS3A01G094700 chr5D 214642529 214643215 686 True 590.0 590 82.479000 5 693 1 chr5D.!!$R2 688
15 TraesCS3A01G094700 chr1D 425532282 425532977 695 False 610.0 610 82.910000 5 695 1 chr1D.!!$F3 690
16 TraesCS3A01G094700 chr1D 337217326 337217917 591 False 272.0 272 75.610000 1132 1734 1 chr1D.!!$F2 602
17 TraesCS3A01G094700 chr1A 571723230 571723917 687 False 604.0 604 82.734000 5 691 1 chr1A.!!$F1 686
18 TraesCS3A01G094700 chr7B 682282909 682283706 797 True 544.0 544 79.222000 1132 1947 1 chr7B.!!$R1 815
19 TraesCS3A01G094700 chr6A 205114773 205115570 797 False 544.0 544 79.222000 1132 1947 1 chr6A.!!$F1 815
20 TraesCS3A01G094700 chr6B 255210563 255211338 775 True 390.0 390 76.306000 1132 1947 1 chr6B.!!$R1 815
21 TraesCS3A01G094700 chr6D 143090790 143091407 617 True 357.0 357 77.512000 2017 2631 1 chr6D.!!$R2 614
22 TraesCS3A01G094700 chr6D 142989284 142989963 679 True 333.0 333 76.046000 1130 1806 1 chr6D.!!$R1 676
23 TraesCS3A01G094700 chr5A 520208236 520209662 1426 True 250.0 263 75.599500 1127 2526 2 chr5A.!!$R2 1399
24 TraesCS3A01G094700 chr5B 491082679 491083197 518 True 241.0 241 75.758000 2017 2526 1 chr5B.!!$R1 509

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
971 1130 0.179207 CAGCGCACGACGTACTCTTA 60.179 55.0 11.47 0.00 46.11 2.10 F
1028 1191 0.382515 GAGAGCCCAGCGTACTACTG 59.617 60.0 5.93 5.93 34.82 2.74 F
1635 1807 0.458669 ACGACCGTGACACTCTGTTT 59.541 50.0 3.68 0.00 0.00 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2964 3248 0.310232 GCCGGGTACGTCTACTGATC 59.690 60.0 2.18 0.0 38.78 2.92 R
2965 3249 1.105759 GGCCGGGTACGTCTACTGAT 61.106 60.0 2.18 0.0 38.78 2.90 R
3167 3522 0.606604 TTGCTAAGTCCCAGTCGACC 59.393 55.0 13.01 0.0 32.91 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
120 121 1.672030 CAAGATGTGGCACCAGCGA 60.672 57.895 16.26 0.00 43.41 4.93
121 122 1.028330 CAAGATGTGGCACCAGCGAT 61.028 55.000 16.26 0.41 43.41 4.58
135 136 4.161295 CGATGGCTGGCCGAGGAA 62.161 66.667 7.14 0.00 39.42 3.36
315 388 2.742372 GCCAACATCGCCGTGACT 60.742 61.111 0.00 0.00 0.00 3.41
396 481 1.028330 AGGACGACGACGATGCCTAA 61.028 55.000 15.32 0.00 42.66 2.69
454 541 6.472686 AGTTTGTTTTAACTAATGTGGGCA 57.527 33.333 0.00 0.00 36.62 5.36
456 543 6.097696 AGTTTGTTTTAACTAATGTGGGCACT 59.902 34.615 0.00 0.00 36.62 4.40
457 544 7.285858 AGTTTGTTTTAACTAATGTGGGCACTA 59.714 33.333 0.00 0.00 36.62 2.74
566 658 1.540267 CTGTTAAAATGGGTCGGGCA 58.460 50.000 0.00 0.00 0.00 5.36
589 681 2.997075 TTGGACGCATACGCCGACT 61.997 57.895 0.00 0.00 45.53 4.18
641 733 2.131972 GGCCGACCAAAATGAACAAAC 58.868 47.619 0.00 0.00 35.26 2.93
644 736 3.619038 GCCGACCAAAATGAACAAACAAA 59.381 39.130 0.00 0.00 0.00 2.83
645 737 4.493382 GCCGACCAAAATGAACAAACAAAC 60.493 41.667 0.00 0.00 0.00 2.93
646 738 4.627467 CCGACCAAAATGAACAAACAAACA 59.373 37.500 0.00 0.00 0.00 2.83
663 755 7.414814 AACAAACAAACAAAATTGTCGTTCT 57.585 28.000 11.94 4.02 42.49 3.01
729 828 1.146263 CGGGGTCCAAGTAGATGGC 59.854 63.158 0.00 0.00 40.46 4.40
742 841 0.249676 AGATGGCTGTGAGCTGTCAG 59.750 55.000 0.00 0.00 41.99 3.51
749 848 2.551459 GCTGTGAGCTGTCAGTTCAAAT 59.449 45.455 19.59 0.00 37.20 2.32
763 862 4.271533 CAGTTCAAATTGTGCATGCAGTTT 59.728 37.500 23.41 18.68 0.00 2.66
823 928 5.287752 CGACTAGTCTAGTAGAGATCGCATC 59.712 48.000 20.34 0.00 39.59 3.91
899 1058 1.589716 GCAGCCAAGATGACCACACC 61.590 60.000 0.00 0.00 0.00 4.16
936 1095 6.934645 CGCTATAAATATCCAAACCTCCTCAA 59.065 38.462 0.00 0.00 0.00 3.02
937 1096 7.095187 CGCTATAAATATCCAAACCTCCTCAAC 60.095 40.741 0.00 0.00 0.00 3.18
938 1097 7.719633 GCTATAAATATCCAAACCTCCTCAACA 59.280 37.037 0.00 0.00 0.00 3.33
971 1130 0.179207 CAGCGCACGACGTACTCTTA 60.179 55.000 11.47 0.00 46.11 2.10
984 1147 1.093159 ACTCTTAACGCCGATCGAGT 58.907 50.000 18.66 13.46 41.67 4.18
1028 1191 0.382515 GAGAGCCCAGCGTACTACTG 59.617 60.000 5.93 5.93 34.82 2.74
1048 1211 1.314867 CCCCTCCTGCCTCTCCTTA 59.685 63.158 0.00 0.00 0.00 2.69
1050 1213 1.150135 CCCCTCCTGCCTCTCCTTATA 59.850 57.143 0.00 0.00 0.00 0.98
1062 1225 5.181056 GCCTCTCCTTATAGTCGTAGTAACC 59.819 48.000 0.00 0.00 0.00 2.85
1064 1227 5.918608 TCTCCTTATAGTCGTAGTAACCGT 58.081 41.667 0.00 0.00 0.00 4.83
1076 1239 0.459759 GTAACCGTGCTCTACCTGGC 60.460 60.000 0.00 0.00 0.00 4.85
1244 1407 2.437180 CCCGCTCATGCTGCTCAA 60.437 61.111 0.00 0.00 36.97 3.02
1635 1807 0.458669 ACGACCGTGACACTCTGTTT 59.541 50.000 3.68 0.00 0.00 2.83
1813 1985 2.028112 CACCGGGACAAGAAGAGATCAA 60.028 50.000 6.32 0.00 0.00 2.57
1823 1995 3.748083 AGAAGAGATCAACAGCTTGCAA 58.252 40.909 0.00 0.00 0.00 4.08
1924 2096 2.480419 CTCACCACGGAGAACATCAAAC 59.520 50.000 0.00 0.00 37.05 2.93
2002 2205 3.270877 CCAAGAACCCTCGATCGAAATT 58.729 45.455 19.92 13.00 0.00 1.82
2003 2206 4.081309 ACCAAGAACCCTCGATCGAAATTA 60.081 41.667 19.92 0.00 0.00 1.40
2125 2390 2.507324 GCTCAAGACGAGGTCCGC 60.507 66.667 0.00 0.00 42.55 5.54
2632 2916 2.361610 CATGTCCCTGTGCCCACC 60.362 66.667 0.00 0.00 0.00 4.61
2633 2917 2.858476 ATGTCCCTGTGCCCACCA 60.858 61.111 0.00 0.00 0.00 4.17
2634 2918 3.210012 ATGTCCCTGTGCCCACCAC 62.210 63.158 0.00 0.00 44.90 4.16
2669 2953 6.670990 CGTACTCGTATTATTAGCACCAAG 57.329 41.667 0.00 0.00 0.00 3.61
2670 2954 6.432936 CGTACTCGTATTATTAGCACCAAGA 58.567 40.000 0.00 0.00 0.00 3.02
2671 2955 6.914215 CGTACTCGTATTATTAGCACCAAGAA 59.086 38.462 0.00 0.00 0.00 2.52
2672 2956 7.594015 CGTACTCGTATTATTAGCACCAAGAAT 59.406 37.037 0.00 0.00 0.00 2.40
2673 2957 9.903682 GTACTCGTATTATTAGCACCAAGAATA 57.096 33.333 0.00 0.00 0.00 1.75
2675 2959 8.639761 ACTCGTATTATTAGCACCAAGAATAGT 58.360 33.333 0.00 0.00 0.00 2.12
2676 2960 9.130312 CTCGTATTATTAGCACCAAGAATAGTC 57.870 37.037 0.00 0.00 0.00 2.59
2677 2961 8.857098 TCGTATTATTAGCACCAAGAATAGTCT 58.143 33.333 0.00 0.00 34.72 3.24
2678 2962 9.130312 CGTATTATTAGCACCAAGAATAGTCTC 57.870 37.037 0.00 0.00 30.70 3.36
2679 2963 9.130312 GTATTATTAGCACCAAGAATAGTCTCG 57.870 37.037 0.00 0.00 30.70 4.04
2680 2964 5.599999 ATTAGCACCAAGAATAGTCTCGT 57.400 39.130 0.00 0.00 30.70 4.18
2681 2965 3.238108 AGCACCAAGAATAGTCTCGTG 57.762 47.619 13.28 13.28 37.22 4.35
2682 2966 2.563179 AGCACCAAGAATAGTCTCGTGT 59.437 45.455 16.89 3.68 36.83 4.49
2683 2967 2.668457 GCACCAAGAATAGTCTCGTGTG 59.332 50.000 16.89 13.79 36.83 3.82
2684 2968 3.861131 GCACCAAGAATAGTCTCGTGTGT 60.861 47.826 16.89 2.74 36.83 3.72
2685 2969 4.307432 CACCAAGAATAGTCTCGTGTGTT 58.693 43.478 10.60 0.00 32.86 3.32
2686 2970 4.750098 CACCAAGAATAGTCTCGTGTGTTT 59.250 41.667 10.60 0.00 32.86 2.83
2687 2971 4.750098 ACCAAGAATAGTCTCGTGTGTTTG 59.250 41.667 0.00 0.00 30.70 2.93
2688 2972 4.377431 CCAAGAATAGTCTCGTGTGTTTGC 60.377 45.833 0.00 0.00 30.70 3.68
2689 2973 3.990092 AGAATAGTCTCGTGTGTTTGCA 58.010 40.909 0.00 0.00 0.00 4.08
2690 2974 3.741344 AGAATAGTCTCGTGTGTTTGCAC 59.259 43.478 0.00 0.00 45.44 4.57
2702 2986 4.430407 GTGTTTGCACGGTTTGTATTTG 57.570 40.909 0.00 0.00 35.75 2.32
2703 2987 3.860536 GTGTTTGCACGGTTTGTATTTGT 59.139 39.130 0.00 0.00 35.75 2.83
2704 2988 3.859961 TGTTTGCACGGTTTGTATTTGTG 59.140 39.130 0.00 0.00 0.00 3.33
2705 2989 2.783828 TGCACGGTTTGTATTTGTGG 57.216 45.000 0.00 0.00 0.00 4.17
2706 2990 2.025155 TGCACGGTTTGTATTTGTGGT 58.975 42.857 0.00 0.00 0.00 4.16
2707 2991 2.223595 TGCACGGTTTGTATTTGTGGTG 60.224 45.455 0.00 0.00 0.00 4.17
2708 2992 2.033550 GCACGGTTTGTATTTGTGGTGA 59.966 45.455 0.00 0.00 0.00 4.02
2709 2993 3.623863 CACGGTTTGTATTTGTGGTGAC 58.376 45.455 0.00 0.00 0.00 3.67
2710 2994 3.314080 CACGGTTTGTATTTGTGGTGACT 59.686 43.478 0.00 0.00 0.00 3.41
2711 2995 4.512198 CACGGTTTGTATTTGTGGTGACTA 59.488 41.667 0.00 0.00 0.00 2.59
2712 2996 5.180492 CACGGTTTGTATTTGTGGTGACTAT 59.820 40.000 0.00 0.00 0.00 2.12
2713 2997 5.180492 ACGGTTTGTATTTGTGGTGACTATG 59.820 40.000 0.00 0.00 0.00 2.23
2714 2998 5.410132 CGGTTTGTATTTGTGGTGACTATGA 59.590 40.000 0.00 0.00 0.00 2.15
2715 2999 6.402118 CGGTTTGTATTTGTGGTGACTATGAG 60.402 42.308 0.00 0.00 0.00 2.90
2716 3000 6.430000 GGTTTGTATTTGTGGTGACTATGAGT 59.570 38.462 0.00 0.00 0.00 3.41
2717 3001 7.040686 GGTTTGTATTTGTGGTGACTATGAGTT 60.041 37.037 0.00 0.00 0.00 3.01
2718 3002 8.349983 GTTTGTATTTGTGGTGACTATGAGTTT 58.650 33.333 0.00 0.00 0.00 2.66
2719 3003 9.562408 TTTGTATTTGTGGTGACTATGAGTTTA 57.438 29.630 0.00 0.00 0.00 2.01
2720 3004 9.562408 TTGTATTTGTGGTGACTATGAGTTTAA 57.438 29.630 0.00 0.00 0.00 1.52
2721 3005 9.562408 TGTATTTGTGGTGACTATGAGTTTAAA 57.438 29.630 0.00 0.00 0.00 1.52
2734 3018 8.947115 ACTATGAGTTTAAAATAAGAGTGTGGC 58.053 33.333 0.00 0.00 0.00 5.01
2735 3019 9.167311 CTATGAGTTTAAAATAAGAGTGTGGCT 57.833 33.333 0.00 0.00 0.00 4.75
2737 3021 8.911918 TGAGTTTAAAATAAGAGTGTGGCTAA 57.088 30.769 0.00 0.00 0.00 3.09
2738 3022 8.999431 TGAGTTTAAAATAAGAGTGTGGCTAAG 58.001 33.333 0.00 0.00 0.00 2.18
2739 3023 8.919777 AGTTTAAAATAAGAGTGTGGCTAAGT 57.080 30.769 0.00 0.00 0.00 2.24
2740 3024 9.000486 AGTTTAAAATAAGAGTGTGGCTAAGTC 58.000 33.333 0.00 0.00 0.00 3.01
2741 3025 9.000486 GTTTAAAATAAGAGTGTGGCTAAGTCT 58.000 33.333 0.00 0.00 0.00 3.24
2742 3026 8.773404 TTAAAATAAGAGTGTGGCTAAGTCTC 57.227 34.615 0.00 0.00 0.00 3.36
2743 3027 6.360370 AAATAAGAGTGTGGCTAAGTCTCA 57.640 37.500 0.00 0.00 0.00 3.27
2744 3028 3.951775 AAGAGTGTGGCTAAGTCTCAG 57.048 47.619 0.00 0.00 0.00 3.35
2745 3029 2.883026 AGAGTGTGGCTAAGTCTCAGT 58.117 47.619 0.00 0.00 0.00 3.41
2746 3030 2.823154 AGAGTGTGGCTAAGTCTCAGTC 59.177 50.000 0.00 0.00 0.00 3.51
2747 3031 1.542030 AGTGTGGCTAAGTCTCAGTCG 59.458 52.381 0.00 0.00 0.00 4.18
2748 3032 1.540267 GTGTGGCTAAGTCTCAGTCGA 59.460 52.381 0.00 0.00 0.00 4.20
2749 3033 1.540267 TGTGGCTAAGTCTCAGTCGAC 59.460 52.381 7.70 7.70 0.00 4.20
2750 3034 1.813786 GTGGCTAAGTCTCAGTCGACT 59.186 52.381 13.58 13.58 45.73 4.18
2751 3035 1.813178 TGGCTAAGTCTCAGTCGACTG 59.187 52.381 34.76 34.76 43.14 3.51
2762 3046 3.303881 CAGTCGACTGAGATTTGACCA 57.696 47.619 36.73 0.00 46.59 4.02
2763 3047 3.653344 CAGTCGACTGAGATTTGACCAA 58.347 45.455 36.73 0.00 46.59 3.67
2764 3048 3.677121 CAGTCGACTGAGATTTGACCAAG 59.323 47.826 36.73 7.53 46.59 3.61
2765 3049 3.322254 AGTCGACTGAGATTTGACCAAGT 59.678 43.478 19.30 0.00 0.00 3.16
2766 3050 3.675698 GTCGACTGAGATTTGACCAAGTC 59.324 47.826 8.70 0.00 0.00 3.01
2767 3051 3.574396 TCGACTGAGATTTGACCAAGTCT 59.426 43.478 7.37 7.37 39.62 3.24
2771 3055 3.320673 GAGATTTGACCAAGTCTCGGT 57.679 47.619 15.98 0.00 41.87 4.69
2777 3061 3.989104 ACCAAGTCTCGGTCAAGTG 57.011 52.632 0.00 0.00 27.30 3.16
2778 3062 1.410004 ACCAAGTCTCGGTCAAGTGA 58.590 50.000 0.00 0.00 27.30 3.41
2779 3063 1.068741 ACCAAGTCTCGGTCAAGTGAC 59.931 52.381 2.69 2.69 44.04 3.67
2780 3064 1.068588 CCAAGTCTCGGTCAAGTGACA 59.931 52.381 13.21 0.00 46.47 3.58
2781 3065 2.289072 CCAAGTCTCGGTCAAGTGACAT 60.289 50.000 13.21 0.00 46.47 3.06
2782 3066 3.056821 CCAAGTCTCGGTCAAGTGACATA 60.057 47.826 13.21 0.04 46.47 2.29
2783 3067 3.851976 AGTCTCGGTCAAGTGACATAC 57.148 47.619 13.21 5.47 46.47 2.39
2784 3068 3.422796 AGTCTCGGTCAAGTGACATACT 58.577 45.455 13.21 7.38 46.47 2.12
2785 3069 4.586884 AGTCTCGGTCAAGTGACATACTA 58.413 43.478 13.21 0.00 46.47 1.82
2786 3070 5.194432 AGTCTCGGTCAAGTGACATACTAT 58.806 41.667 13.21 0.00 46.47 2.12
2787 3071 5.066634 AGTCTCGGTCAAGTGACATACTATG 59.933 44.000 13.21 0.00 46.47 2.23
2788 3072 4.041740 TCGGTCAAGTGACATACTATGC 57.958 45.455 13.21 0.00 46.47 3.14
2789 3073 3.445805 TCGGTCAAGTGACATACTATGCA 59.554 43.478 13.21 0.00 46.47 3.96
2790 3074 4.081917 TCGGTCAAGTGACATACTATGCAA 60.082 41.667 13.21 0.00 46.47 4.08
2791 3075 4.629634 CGGTCAAGTGACATACTATGCAAA 59.370 41.667 13.21 0.00 46.47 3.68
2792 3076 5.121611 CGGTCAAGTGACATACTATGCAAAA 59.878 40.000 13.21 0.00 46.47 2.44
2793 3077 6.546395 GGTCAAGTGACATACTATGCAAAAG 58.454 40.000 13.21 0.00 46.47 2.27
2794 3078 6.371548 GGTCAAGTGACATACTATGCAAAAGA 59.628 38.462 13.21 0.00 46.47 2.52
2795 3079 7.413438 GGTCAAGTGACATACTATGCAAAAGAG 60.413 40.741 13.21 0.00 46.47 2.85
2796 3080 7.331934 GTCAAGTGACATACTATGCAAAAGAGA 59.668 37.037 6.57 0.00 44.18 3.10
2797 3081 7.877612 TCAAGTGACATACTATGCAAAAGAGAA 59.122 33.333 6.45 0.00 39.18 2.87
2798 3082 8.506437 CAAGTGACATACTATGCAAAAGAGAAA 58.494 33.333 6.45 0.00 39.18 2.52
2799 3083 8.621532 AGTGACATACTATGCAAAAGAGAAAA 57.378 30.769 6.45 0.00 38.04 2.29
2800 3084 8.725148 AGTGACATACTATGCAAAAGAGAAAAG 58.275 33.333 6.45 0.00 38.04 2.27
2801 3085 8.721478 GTGACATACTATGCAAAAGAGAAAAGA 58.279 33.333 6.45 0.00 0.00 2.52
2802 3086 9.283768 TGACATACTATGCAAAAGAGAAAAGAA 57.716 29.630 6.45 0.00 0.00 2.52
2844 3128 8.746922 TTTTGCACAAATCTCAATGTTAGATC 57.253 30.769 0.00 0.00 32.48 2.75
2845 3129 6.441093 TGCACAAATCTCAATGTTAGATCC 57.559 37.500 0.00 0.00 32.48 3.36
2846 3130 5.357878 TGCACAAATCTCAATGTTAGATCCC 59.642 40.000 0.00 0.00 32.48 3.85
2847 3131 5.357878 GCACAAATCTCAATGTTAGATCCCA 59.642 40.000 0.00 0.00 32.48 4.37
2848 3132 6.040166 GCACAAATCTCAATGTTAGATCCCAT 59.960 38.462 0.00 0.00 32.48 4.00
2849 3133 7.423199 CACAAATCTCAATGTTAGATCCCATG 58.577 38.462 0.00 0.00 32.48 3.66
2850 3134 6.548622 ACAAATCTCAATGTTAGATCCCATGG 59.451 38.462 4.14 4.14 32.48 3.66
2851 3135 6.520021 AATCTCAATGTTAGATCCCATGGA 57.480 37.500 15.22 0.00 32.48 3.41
2852 3136 6.715350 ATCTCAATGTTAGATCCCATGGAT 57.285 37.500 15.22 4.71 46.28 3.41
2853 3137 7.819521 ATCTCAATGTTAGATCCCATGGATA 57.180 36.000 15.22 0.30 43.27 2.59
2854 3138 7.819521 TCTCAATGTTAGATCCCATGGATAT 57.180 36.000 15.22 6.26 43.27 1.63
2855 3139 8.915813 TCTCAATGTTAGATCCCATGGATATA 57.084 34.615 15.22 3.93 43.27 0.86
2856 3140 9.337714 TCTCAATGTTAGATCCCATGGATATAA 57.662 33.333 15.22 9.85 43.27 0.98
2862 3146 7.971368 TTAGATCCCATGGATATAACATCGA 57.029 36.000 15.22 0.00 43.27 3.59
2863 3147 6.227298 AGATCCCATGGATATAACATCGAC 57.773 41.667 15.22 0.00 43.27 4.20
2864 3148 5.960811 AGATCCCATGGATATAACATCGACT 59.039 40.000 15.22 0.00 43.27 4.18
2865 3149 5.405935 TCCCATGGATATAACATCGACTG 57.594 43.478 15.22 0.00 0.00 3.51
2866 3150 5.083821 TCCCATGGATATAACATCGACTGA 58.916 41.667 15.22 0.00 0.00 3.41
2867 3151 5.185828 TCCCATGGATATAACATCGACTGAG 59.814 44.000 15.22 0.00 0.00 3.35
2868 3152 5.185828 CCCATGGATATAACATCGACTGAGA 59.814 44.000 15.22 0.00 0.00 3.27
2869 3153 6.096036 CCATGGATATAACATCGACTGAGAC 58.904 44.000 5.56 0.00 0.00 3.36
2870 3154 6.071672 CCATGGATATAACATCGACTGAGACT 60.072 42.308 5.56 0.00 0.00 3.24
2871 3155 6.961360 TGGATATAACATCGACTGAGACTT 57.039 37.500 0.00 0.00 0.00 3.01
2872 3156 6.971602 TGGATATAACATCGACTGAGACTTC 58.028 40.000 0.00 0.00 0.00 3.01
2873 3157 6.081049 GGATATAACATCGACTGAGACTTCG 58.919 44.000 0.00 0.00 36.55 3.79
2874 3158 1.983972 AACATCGACTGAGACTTCGC 58.016 50.000 0.00 0.00 35.15 4.70
2875 3159 1.169577 ACATCGACTGAGACTTCGCT 58.830 50.000 0.00 0.00 35.15 4.93
2876 3160 2.357075 ACATCGACTGAGACTTCGCTA 58.643 47.619 0.00 0.00 35.15 4.26
2877 3161 2.946329 ACATCGACTGAGACTTCGCTAT 59.054 45.455 0.00 0.00 35.15 2.97
2878 3162 3.242903 ACATCGACTGAGACTTCGCTATG 60.243 47.826 0.00 0.00 35.15 2.23
2879 3163 2.357075 TCGACTGAGACTTCGCTATGT 58.643 47.619 0.00 0.00 35.15 2.29
2880 3164 2.352034 TCGACTGAGACTTCGCTATGTC 59.648 50.000 0.00 0.00 35.15 3.06
2881 3165 2.353269 CGACTGAGACTTCGCTATGTCT 59.647 50.000 6.50 6.50 45.06 3.41
2887 3171 3.958704 AGACTTCGCTATGTCTCAATCG 58.041 45.455 1.38 0.00 39.04 3.34
2888 3172 3.628032 AGACTTCGCTATGTCTCAATCGA 59.372 43.478 1.38 0.00 39.04 3.59
2889 3173 3.696898 ACTTCGCTATGTCTCAATCGAC 58.303 45.455 0.00 0.00 34.52 4.20
2890 3174 2.776312 TCGCTATGTCTCAATCGACC 57.224 50.000 0.00 0.00 32.97 4.79
2891 3175 1.002792 TCGCTATGTCTCAATCGACCG 60.003 52.381 0.00 0.00 32.97 4.79
2892 3176 1.002792 CGCTATGTCTCAATCGACCGA 60.003 52.381 0.00 0.00 32.97 4.69
2893 3177 2.656085 GCTATGTCTCAATCGACCGAG 58.344 52.381 6.59 6.59 32.97 4.63
2894 3178 2.290916 GCTATGTCTCAATCGACCGAGA 59.709 50.000 10.75 10.75 35.93 4.04
2900 3184 4.352600 TCTCAATCGACCGAGACTTAAC 57.647 45.455 10.75 0.00 33.37 2.01
2901 3185 3.754850 TCTCAATCGACCGAGACTTAACA 59.245 43.478 10.75 0.00 33.37 2.41
2902 3186 4.216902 TCTCAATCGACCGAGACTTAACAA 59.783 41.667 10.75 0.00 33.37 2.83
2903 3187 4.482386 TCAATCGACCGAGACTTAACAAG 58.518 43.478 0.00 0.00 0.00 3.16
2904 3188 4.216902 TCAATCGACCGAGACTTAACAAGA 59.783 41.667 0.00 0.00 0.00 3.02
2905 3189 3.549299 TCGACCGAGACTTAACAAGAC 57.451 47.619 0.00 0.00 0.00 3.01
2906 3190 3.144506 TCGACCGAGACTTAACAAGACT 58.855 45.455 0.00 0.00 36.25 3.24
2907 3191 4.318332 TCGACCGAGACTTAACAAGACTA 58.682 43.478 0.00 0.00 33.75 2.59
2908 3192 4.940046 TCGACCGAGACTTAACAAGACTAT 59.060 41.667 0.00 0.00 33.75 2.12
2909 3193 5.413833 TCGACCGAGACTTAACAAGACTATT 59.586 40.000 0.00 0.00 33.75 1.73
2910 3194 6.595326 TCGACCGAGACTTAACAAGACTATTA 59.405 38.462 0.00 0.00 33.75 0.98
2911 3195 7.119699 TCGACCGAGACTTAACAAGACTATTAA 59.880 37.037 0.00 0.00 33.75 1.40
2912 3196 7.752239 CGACCGAGACTTAACAAGACTATTAAA 59.248 37.037 0.00 0.00 33.75 1.52
2913 3197 9.415544 GACCGAGACTTAACAAGACTATTAAAA 57.584 33.333 0.00 0.00 33.75 1.52
2914 3198 9.939802 ACCGAGACTTAACAAGACTATTAAAAT 57.060 29.630 0.00 0.00 33.75 1.82
2932 3216 8.691661 ATTAAAATGAATATCTTGGCTACGGT 57.308 30.769 0.00 0.00 0.00 4.83
2933 3217 8.514330 TTAAAATGAATATCTTGGCTACGGTT 57.486 30.769 0.00 0.00 0.00 4.44
2934 3218 6.377327 AAATGAATATCTTGGCTACGGTTG 57.623 37.500 0.00 0.00 0.00 3.77
2935 3219 4.481368 TGAATATCTTGGCTACGGTTGT 57.519 40.909 0.00 0.00 0.00 3.32
2936 3220 5.601583 TGAATATCTTGGCTACGGTTGTA 57.398 39.130 0.00 0.00 0.00 2.41
2937 3221 5.979993 TGAATATCTTGGCTACGGTTGTAA 58.020 37.500 0.00 0.00 0.00 2.41
2938 3222 6.046593 TGAATATCTTGGCTACGGTTGTAAG 58.953 40.000 0.00 0.00 0.00 2.34
2939 3223 2.754946 TCTTGGCTACGGTTGTAAGG 57.245 50.000 0.00 0.00 0.00 2.69
2940 3224 2.250031 TCTTGGCTACGGTTGTAAGGA 58.750 47.619 0.00 0.00 0.00 3.36
2941 3225 2.835764 TCTTGGCTACGGTTGTAAGGAT 59.164 45.455 0.00 0.00 0.00 3.24
2942 3226 2.973694 TGGCTACGGTTGTAAGGATC 57.026 50.000 0.00 0.00 0.00 3.36
2943 3227 2.463752 TGGCTACGGTTGTAAGGATCT 58.536 47.619 0.00 0.00 0.00 2.75
2944 3228 2.167693 TGGCTACGGTTGTAAGGATCTG 59.832 50.000 0.00 0.00 0.00 2.90
2945 3229 2.202566 GCTACGGTTGTAAGGATCTGC 58.797 52.381 0.00 0.00 0.00 4.26
2946 3230 2.418197 GCTACGGTTGTAAGGATCTGCA 60.418 50.000 0.00 0.00 0.00 4.41
2947 3231 2.386661 ACGGTTGTAAGGATCTGCAG 57.613 50.000 7.63 7.63 0.00 4.41
2948 3232 1.623811 ACGGTTGTAAGGATCTGCAGT 59.376 47.619 14.67 0.42 0.00 4.40
2949 3233 2.038557 ACGGTTGTAAGGATCTGCAGTT 59.961 45.455 14.67 5.03 0.00 3.16
2950 3234 3.074412 CGGTTGTAAGGATCTGCAGTTT 58.926 45.455 14.67 2.24 0.00 2.66
2951 3235 3.125316 CGGTTGTAAGGATCTGCAGTTTC 59.875 47.826 14.67 11.84 0.00 2.78
2952 3236 3.440522 GGTTGTAAGGATCTGCAGTTTCC 59.559 47.826 22.94 22.94 0.00 3.13
2953 3237 3.350219 TGTAAGGATCTGCAGTTTCCC 57.650 47.619 25.22 17.01 0.00 3.97
2954 3238 2.912956 TGTAAGGATCTGCAGTTTCCCT 59.087 45.455 25.22 18.88 0.00 4.20
2955 3239 2.503895 AAGGATCTGCAGTTTCCCTG 57.496 50.000 25.22 0.00 44.53 4.45
2956 3240 1.366319 AGGATCTGCAGTTTCCCTGT 58.634 50.000 25.22 11.68 43.55 4.00
2957 3241 1.004044 AGGATCTGCAGTTTCCCTGTG 59.996 52.381 25.22 0.00 43.55 3.66
2958 3242 0.807496 GATCTGCAGTTTCCCTGTGC 59.193 55.000 14.67 0.00 43.55 4.57
2959 3243 0.610232 ATCTGCAGTTTCCCTGTGCC 60.610 55.000 14.67 0.00 43.55 5.01
2960 3244 2.203480 TGCAGTTTCCCTGTGCCC 60.203 61.111 0.00 0.00 43.55 5.36
2961 3245 2.203480 GCAGTTTCCCTGTGCCCA 60.203 61.111 0.00 0.00 43.55 5.36
2962 3246 2.564721 GCAGTTTCCCTGTGCCCAC 61.565 63.158 0.00 0.00 43.55 4.61
2963 3247 1.152777 CAGTTTCCCTGTGCCCACA 60.153 57.895 0.71 0.71 39.32 4.17
2996 3280 2.660552 CCGGCCGTATTAGCACCG 60.661 66.667 26.12 0.00 43.44 4.94
3001 3285 1.472026 GGCCGTATTAGCACCGAGAAA 60.472 52.381 0.00 0.00 0.00 2.52
3003 3287 2.674357 GCCGTATTAGCACCGAGAAAAA 59.326 45.455 0.00 0.00 0.00 1.94
3054 3338 2.602217 GCTTTGTGGTGACAATCGTGAC 60.602 50.000 0.00 0.00 46.06 3.67
3059 3343 0.447801 GGTGACAATCGTGACATGCC 59.552 55.000 0.00 0.00 32.10 4.40
3113 3397 1.751351 TGCCTAGGTCTCATTCGACTG 59.249 52.381 11.31 0.00 34.38 3.51
3126 3410 8.601845 TCTCATTCGACTGAGATTTAACAAAA 57.398 30.769 26.33 5.58 45.13 2.44
3128 3412 9.831737 CTCATTCGACTGAGATTTAACAAAATT 57.168 29.630 24.22 0.00 44.48 1.82
3156 3511 5.569823 GTCAAGTGACATCGAGTAAGACTTC 59.430 44.000 6.57 0.00 44.18 3.01
3157 3512 5.473846 TCAAGTGACATCGAGTAAGACTTCT 59.526 40.000 0.00 0.00 0.00 2.85
3176 3531 1.666700 CTCTAAGTCTCGGTCGACTGG 59.333 57.143 23.78 14.45 43.14 4.00
3197 3552 7.686434 ACTGGGACTTAGCAAGACTATTAAAA 58.314 34.615 3.37 0.00 0.00 1.52
3241 3596 9.476202 GTTGTAAGGATCTGCAGTTTTTATTTT 57.524 29.630 14.67 1.71 0.00 1.82
3244 3599 9.476202 GTAAGGATCTGCAGTTTTTATTTTTGT 57.524 29.630 14.67 0.00 0.00 2.83
3251 3607 9.818796 TCTGCAGTTTTTATTTTTGTTGTTTTC 57.181 25.926 14.67 0.00 0.00 2.29
3620 3976 9.142515 CAAGCTAAAAGATGCACAATTTGATTA 57.857 29.630 2.79 0.00 0.00 1.75
3627 3983 4.454728 TGCACAATTTGATTAGCTTCCC 57.545 40.909 2.79 0.00 0.00 3.97
3633 3989 1.580059 TTGATTAGCTTCCCGAGGGT 58.420 50.000 8.20 0.00 36.47 4.34
3636 3992 4.122337 TGATTAGCTTCCCGAGGGTATA 57.878 45.455 8.20 0.00 36.47 1.47
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.056700 AGTAGCGCTTGATGGGGGAT 61.057 55.000 18.68 0.00 0.00 3.85
60 61 2.355115 GTCGCCCCCATCCAAACT 59.645 61.111 0.00 0.00 0.00 2.66
91 92 1.153628 ACATCTTGAGGTACGCCGC 60.154 57.895 0.00 0.00 40.50 6.53
92 93 0.806102 CCACATCTTGAGGTACGCCG 60.806 60.000 0.00 0.00 40.50 6.46
120 121 4.473520 CGTTCCTCGGCCAGCCAT 62.474 66.667 9.78 0.00 35.37 4.40
301 374 0.250124 TTCCAAGTCACGGCGATGTT 60.250 50.000 16.62 0.00 0.00 2.71
323 396 4.016706 CGGCCCAAGGGAACGTCT 62.017 66.667 9.92 0.00 37.50 4.18
436 521 5.941647 TCCTAGTGCCCACATTAGTTAAAAC 59.058 40.000 0.82 0.00 35.02 2.43
437 522 5.941647 GTCCTAGTGCCCACATTAGTTAAAA 59.058 40.000 0.82 0.00 35.02 1.52
452 539 2.409651 CGGCGAGAGTCCTAGTGC 59.590 66.667 0.00 0.00 0.00 4.40
454 541 2.829458 GCCGGCGAGAGTCCTAGT 60.829 66.667 12.58 0.00 0.00 2.57
456 543 3.657038 AAGGCCGGCGAGAGTCCTA 62.657 63.158 22.54 0.00 0.00 2.94
548 640 1.889829 CTTGCCCGACCCATTTTAACA 59.110 47.619 0.00 0.00 0.00 2.41
615 707 3.355203 ATTTTGGTCGGCCATGCGC 62.355 57.895 10.94 0.00 45.56 6.09
619 711 1.626686 TGTTCATTTTGGTCGGCCAT 58.373 45.000 10.94 0.00 45.56 4.40
633 725 7.584123 CGACAATTTTGTTTGTTTGTTTGTTCA 59.416 29.630 0.00 0.00 42.43 3.18
635 727 7.410485 ACGACAATTTTGTTTGTTTGTTTGTT 58.590 26.923 0.00 0.00 42.43 2.83
641 733 8.617267 CAAAAGAACGACAATTTTGTTTGTTTG 58.383 29.630 12.98 8.07 42.43 2.93
644 736 6.128418 CCCAAAAGAACGACAATTTTGTTTGT 60.128 34.615 14.10 0.00 42.43 2.83
645 737 6.128418 ACCCAAAAGAACGACAATTTTGTTTG 60.128 34.615 14.10 0.00 42.43 2.93
646 738 5.935206 ACCCAAAAGAACGACAATTTTGTTT 59.065 32.000 14.10 0.00 42.43 2.83
655 747 0.178533 ACCGACCCAAAAGAACGACA 59.821 50.000 0.00 0.00 0.00 4.35
663 755 2.640826 ACTCTAATGGACCGACCCAAAA 59.359 45.455 0.00 0.00 40.04 2.44
695 787 1.625818 CCCCGCTCCTTCTAAGCATAT 59.374 52.381 0.00 0.00 39.81 1.78
696 788 1.048601 CCCCGCTCCTTCTAAGCATA 58.951 55.000 0.00 0.00 39.81 3.14
697 789 0.983378 ACCCCGCTCCTTCTAAGCAT 60.983 55.000 0.00 0.00 39.81 3.79
698 790 1.612442 ACCCCGCTCCTTCTAAGCA 60.612 57.895 0.00 0.00 39.81 3.91
699 791 1.144276 GACCCCGCTCCTTCTAAGC 59.856 63.158 0.00 0.00 36.38 3.09
729 828 4.036027 ACAATTTGAACTGACAGCTCACAG 59.964 41.667 8.07 13.17 39.65 3.66
742 841 4.520078 CAAACTGCATGCACAATTTGAAC 58.480 39.130 27.74 0.00 30.35 3.18
749 848 1.069427 GCCCAAACTGCATGCACAA 59.931 52.632 18.46 0.00 0.00 3.33
763 862 3.071837 TGCTACGACATCGGCCCA 61.072 61.111 6.21 0.00 44.95 5.36
804 907 2.739913 GCGATGCGATCTCTACTAGACT 59.260 50.000 0.00 0.00 36.93 3.24
823 928 1.431845 GCCCGGATTAAACTTGGCG 59.568 57.895 0.73 0.00 0.00 5.69
848 990 1.361993 GTTTGCATTCCGTGGCACA 59.638 52.632 19.09 0.00 40.23 4.57
936 1095 2.868583 GCGCTGATGTATTGTCTCATGT 59.131 45.455 0.00 0.00 0.00 3.21
937 1096 2.867975 TGCGCTGATGTATTGTCTCATG 59.132 45.455 9.73 0.00 0.00 3.07
938 1097 2.868583 GTGCGCTGATGTATTGTCTCAT 59.131 45.455 9.73 0.00 0.00 2.90
971 1130 1.068474 CTTTGAACTCGATCGGCGTT 58.932 50.000 16.41 17.93 41.80 4.84
984 1147 1.540267 CCATGGCCGGTAACTTTGAA 58.460 50.000 1.90 0.00 0.00 2.69
1020 1183 1.687297 GCAGGAGGGGCCAGTAGTAC 61.687 65.000 4.39 0.00 40.02 2.73
1031 1194 2.158234 ACTATAAGGAGAGGCAGGAGGG 60.158 54.545 0.00 0.00 0.00 4.30
1048 1211 3.539604 AGAGCACGGTTACTACGACTAT 58.460 45.455 0.00 0.00 34.93 2.12
1050 1213 1.818642 AGAGCACGGTTACTACGACT 58.181 50.000 0.00 0.00 34.93 4.18
1062 1225 4.514577 CCCGCCAGGTAGAGCACG 62.515 72.222 0.00 0.00 35.12 5.34
1243 1406 2.759795 GGGGAGCTGGCAGAACTT 59.240 61.111 20.86 0.00 0.00 2.66
1244 1407 3.710722 CGGGGAGCTGGCAGAACT 61.711 66.667 20.86 6.50 0.00 3.01
1540 1712 1.142688 AGCCCCCTGGTCAAGTTCAT 61.143 55.000 0.00 0.00 0.00 2.57
1741 1913 3.024043 GCGTTTGTTGCGGTGCTG 61.024 61.111 0.00 0.00 0.00 4.41
1813 1985 3.649986 GCCGTCGTTGCAAGCTGT 61.650 61.111 0.00 0.00 0.00 4.40
1823 1995 3.745803 GTTCCTCTCCGCCGTCGT 61.746 66.667 0.00 0.00 0.00 4.34
1924 2096 5.048083 GGAGAGAGCTTACTATGATGACCAG 60.048 48.000 0.00 0.00 0.00 4.00
2110 2375 3.744719 CGGCGGACCTCGTCTTGA 61.745 66.667 0.00 0.00 42.07 3.02
2545 2829 1.566211 CCTCCTCAGTCATGTCCAGT 58.434 55.000 0.00 0.00 0.00 4.00
2632 2916 4.184889 CGAGTACGTCTACTGATCTGTG 57.815 50.000 14.91 5.83 32.96 3.66
2659 2943 4.219944 ACACGAGACTATTCTTGGTGCTAA 59.780 41.667 12.27 0.00 38.90 3.09
2660 2944 3.762288 ACACGAGACTATTCTTGGTGCTA 59.238 43.478 12.27 0.00 38.90 3.49
2662 2946 2.668457 CACACGAGACTATTCTTGGTGC 59.332 50.000 12.27 0.00 38.90 5.01
2665 2949 4.377431 GCAAACACACGAGACTATTCTTGG 60.377 45.833 2.66 0.00 37.56 3.61
2666 2950 4.211164 TGCAAACACACGAGACTATTCTTG 59.789 41.667 0.00 0.00 39.04 3.02
2668 2952 3.741344 GTGCAAACACACGAGACTATTCT 59.259 43.478 0.00 0.00 46.61 2.40
2669 2953 4.053903 GTGCAAACACACGAGACTATTC 57.946 45.455 0.00 0.00 46.61 1.75
2681 2965 3.860536 ACAAATACAAACCGTGCAAACAC 59.139 39.130 0.00 0.00 43.76 3.32
2682 2966 3.859961 CACAAATACAAACCGTGCAAACA 59.140 39.130 0.00 0.00 0.00 2.83
2683 2967 3.244111 CCACAAATACAAACCGTGCAAAC 59.756 43.478 0.00 0.00 0.00 2.93
2684 2968 3.119101 ACCACAAATACAAACCGTGCAAA 60.119 39.130 0.00 0.00 0.00 3.68
2685 2969 2.427453 ACCACAAATACAAACCGTGCAA 59.573 40.909 0.00 0.00 0.00 4.08
2686 2970 2.025155 ACCACAAATACAAACCGTGCA 58.975 42.857 0.00 0.00 0.00 4.57
2687 2971 2.033550 TCACCACAAATACAAACCGTGC 59.966 45.455 0.00 0.00 0.00 5.34
2688 2972 3.314080 AGTCACCACAAATACAAACCGTG 59.686 43.478 0.00 0.00 0.00 4.94
2689 2973 3.547746 AGTCACCACAAATACAAACCGT 58.452 40.909 0.00 0.00 0.00 4.83
2690 2974 5.410132 TCATAGTCACCACAAATACAAACCG 59.590 40.000 0.00 0.00 0.00 4.44
2691 2975 6.430000 ACTCATAGTCACCACAAATACAAACC 59.570 38.462 0.00 0.00 0.00 3.27
2692 2976 7.435068 ACTCATAGTCACCACAAATACAAAC 57.565 36.000 0.00 0.00 0.00 2.93
2693 2977 8.458573 AAACTCATAGTCACCACAAATACAAA 57.541 30.769 0.00 0.00 0.00 2.83
2694 2978 9.562408 TTAAACTCATAGTCACCACAAATACAA 57.438 29.630 0.00 0.00 0.00 2.41
2695 2979 9.562408 TTTAAACTCATAGTCACCACAAATACA 57.438 29.630 0.00 0.00 0.00 2.29
2708 2992 8.947115 GCCACACTCTTATTTTAAACTCATAGT 58.053 33.333 0.00 0.00 0.00 2.12
2709 2993 9.167311 AGCCACACTCTTATTTTAAACTCATAG 57.833 33.333 0.00 0.00 0.00 2.23
2711 2995 9.515226 TTAGCCACACTCTTATTTTAAACTCAT 57.485 29.630 0.00 0.00 0.00 2.90
2712 2996 8.911918 TTAGCCACACTCTTATTTTAAACTCA 57.088 30.769 0.00 0.00 0.00 3.41
2713 2997 9.000486 ACTTAGCCACACTCTTATTTTAAACTC 58.000 33.333 0.00 0.00 0.00 3.01
2714 2998 8.919777 ACTTAGCCACACTCTTATTTTAAACT 57.080 30.769 0.00 0.00 0.00 2.66
2715 2999 9.000486 AGACTTAGCCACACTCTTATTTTAAAC 58.000 33.333 0.00 0.00 0.00 2.01
2716 3000 9.216117 GAGACTTAGCCACACTCTTATTTTAAA 57.784 33.333 0.00 0.00 0.00 1.52
2717 3001 8.372459 TGAGACTTAGCCACACTCTTATTTTAA 58.628 33.333 0.00 0.00 0.00 1.52
2718 3002 7.903145 TGAGACTTAGCCACACTCTTATTTTA 58.097 34.615 0.00 0.00 0.00 1.52
2719 3003 6.769512 TGAGACTTAGCCACACTCTTATTTT 58.230 36.000 0.00 0.00 0.00 1.82
2720 3004 6.014156 ACTGAGACTTAGCCACACTCTTATTT 60.014 38.462 0.00 0.00 0.00 1.40
2721 3005 5.482175 ACTGAGACTTAGCCACACTCTTATT 59.518 40.000 0.00 0.00 0.00 1.40
2722 3006 5.020132 ACTGAGACTTAGCCACACTCTTAT 58.980 41.667 0.00 0.00 0.00 1.73
2723 3007 4.408276 ACTGAGACTTAGCCACACTCTTA 58.592 43.478 0.00 0.00 0.00 2.10
2724 3008 3.235200 ACTGAGACTTAGCCACACTCTT 58.765 45.455 0.00 0.00 0.00 2.85
2725 3009 2.823154 GACTGAGACTTAGCCACACTCT 59.177 50.000 0.00 0.00 0.00 3.24
2726 3010 2.414824 CGACTGAGACTTAGCCACACTC 60.415 54.545 0.00 0.00 0.00 3.51
2727 3011 1.542030 CGACTGAGACTTAGCCACACT 59.458 52.381 0.00 0.00 0.00 3.55
2728 3012 1.540267 TCGACTGAGACTTAGCCACAC 59.460 52.381 0.00 0.00 0.00 3.82
2729 3013 1.540267 GTCGACTGAGACTTAGCCACA 59.460 52.381 8.70 0.00 38.09 4.17
2730 3014 2.265647 GTCGACTGAGACTTAGCCAC 57.734 55.000 8.70 0.00 38.09 5.01
2741 3025 8.661061 GACTTGGTCAAATCTCAGTCGACTGA 62.661 46.154 38.24 38.24 40.26 3.41
2742 3026 3.303881 TGGTCAAATCTCAGTCGACTG 57.696 47.619 34.76 34.76 45.08 3.51
2743 3027 3.322254 ACTTGGTCAAATCTCAGTCGACT 59.678 43.478 13.58 13.58 0.00 4.18
2744 3028 3.654414 ACTTGGTCAAATCTCAGTCGAC 58.346 45.455 7.70 7.70 0.00 4.20
2745 3029 3.574396 AGACTTGGTCAAATCTCAGTCGA 59.426 43.478 0.52 0.00 34.60 4.20
2746 3030 3.919216 AGACTTGGTCAAATCTCAGTCG 58.081 45.455 0.52 0.00 34.60 4.18
2747 3031 3.923461 CGAGACTTGGTCAAATCTCAGTC 59.077 47.826 18.22 6.56 37.97 3.51
2748 3032 3.306364 CCGAGACTTGGTCAAATCTCAGT 60.306 47.826 18.22 0.00 37.97 3.41
2749 3033 3.257393 CCGAGACTTGGTCAAATCTCAG 58.743 50.000 18.22 12.15 37.97 3.35
2750 3034 2.632996 ACCGAGACTTGGTCAAATCTCA 59.367 45.455 18.22 0.00 37.97 3.27
2751 3035 3.320673 ACCGAGACTTGGTCAAATCTC 57.679 47.619 8.76 10.93 33.35 2.75
2759 3043 1.068741 GTCACTTGACCGAGACTTGGT 59.931 52.381 14.73 14.73 44.10 3.67
2760 3044 1.068588 TGTCACTTGACCGAGACTTGG 59.931 52.381 7.25 7.25 44.15 3.61
2761 3045 2.509052 TGTCACTTGACCGAGACTTG 57.491 50.000 6.91 0.00 44.15 3.16
2762 3046 3.827302 AGTATGTCACTTGACCGAGACTT 59.173 43.478 6.91 0.00 44.15 3.01
2763 3047 3.422796 AGTATGTCACTTGACCGAGACT 58.577 45.455 6.91 0.00 44.15 3.24
2764 3048 3.851976 AGTATGTCACTTGACCGAGAC 57.148 47.619 6.91 0.00 44.15 3.36
2765 3049 4.202020 GCATAGTATGTCACTTGACCGAGA 60.202 45.833 11.73 0.00 44.15 4.04
2766 3050 4.045104 GCATAGTATGTCACTTGACCGAG 58.955 47.826 11.73 0.00 44.15 4.63
2767 3051 3.445805 TGCATAGTATGTCACTTGACCGA 59.554 43.478 11.73 0.00 44.15 4.69
2768 3052 3.780902 TGCATAGTATGTCACTTGACCG 58.219 45.455 11.73 0.00 44.15 4.79
2769 3053 6.371548 TCTTTTGCATAGTATGTCACTTGACC 59.628 38.462 11.73 0.00 44.15 4.02
2770 3054 7.331934 TCTCTTTTGCATAGTATGTCACTTGAC 59.668 37.037 11.73 2.19 44.97 3.18
2771 3055 7.386059 TCTCTTTTGCATAGTATGTCACTTGA 58.614 34.615 11.73 7.01 38.80 3.02
2772 3056 7.601073 TCTCTTTTGCATAGTATGTCACTTG 57.399 36.000 11.73 3.84 38.80 3.16
2773 3057 8.621532 TTTCTCTTTTGCATAGTATGTCACTT 57.378 30.769 11.73 0.00 38.80 3.16
2774 3058 8.621532 TTTTCTCTTTTGCATAGTATGTCACT 57.378 30.769 11.73 0.00 41.62 3.41
2775 3059 8.721478 TCTTTTCTCTTTTGCATAGTATGTCAC 58.279 33.333 11.73 0.00 0.00 3.67
2776 3060 8.846943 TCTTTTCTCTTTTGCATAGTATGTCA 57.153 30.769 11.73 7.44 0.00 3.58
2818 3102 9.195411 GATCTAACATTGAGATTTGTGCAAAAA 57.805 29.630 4.10 4.10 33.71 1.94
2819 3103 7.814107 GGATCTAACATTGAGATTTGTGCAAAA 59.186 33.333 1.26 0.00 33.71 2.44
2820 3104 7.315142 GGATCTAACATTGAGATTTGTGCAAA 58.685 34.615 0.00 0.00 33.71 3.68
2821 3105 6.127647 GGGATCTAACATTGAGATTTGTGCAA 60.128 38.462 0.00 0.00 33.71 4.08
2822 3106 5.357878 GGGATCTAACATTGAGATTTGTGCA 59.642 40.000 0.00 0.00 33.71 4.57
2823 3107 5.357878 TGGGATCTAACATTGAGATTTGTGC 59.642 40.000 0.00 0.00 33.71 4.57
2824 3108 7.423199 CATGGGATCTAACATTGAGATTTGTG 58.577 38.462 0.00 0.00 33.71 3.33
2825 3109 6.548622 CCATGGGATCTAACATTGAGATTTGT 59.451 38.462 2.85 0.00 33.71 2.83
2826 3110 6.774170 TCCATGGGATCTAACATTGAGATTTG 59.226 38.462 13.02 0.00 33.71 2.32
2827 3111 6.914665 TCCATGGGATCTAACATTGAGATTT 58.085 36.000 13.02 0.00 33.71 2.17
2828 3112 6.520021 TCCATGGGATCTAACATTGAGATT 57.480 37.500 13.02 0.00 33.71 2.40
2829 3113 6.715350 ATCCATGGGATCTAACATTGAGAT 57.285 37.500 13.02 0.00 38.09 2.75
2830 3114 7.819521 ATATCCATGGGATCTAACATTGAGA 57.180 36.000 13.02 0.00 42.11 3.27
2831 3115 9.388506 GTTATATCCATGGGATCTAACATTGAG 57.611 37.037 20.09 0.00 44.27 3.02
2832 3116 8.889445 TGTTATATCCATGGGATCTAACATTGA 58.111 33.333 22.22 8.58 46.74 2.57
2837 3121 7.707035 GTCGATGTTATATCCATGGGATCTAAC 59.293 40.741 13.02 19.00 44.69 2.34
2838 3122 7.619698 AGTCGATGTTATATCCATGGGATCTAA 59.380 37.037 13.02 5.15 42.11 2.10
2839 3123 7.068716 CAGTCGATGTTATATCCATGGGATCTA 59.931 40.741 13.02 0.00 42.11 1.98
2840 3124 5.960811 AGTCGATGTTATATCCATGGGATCT 59.039 40.000 13.02 0.00 42.11 2.75
2841 3125 6.045318 CAGTCGATGTTATATCCATGGGATC 58.955 44.000 13.02 2.05 42.11 3.36
2842 3126 5.721480 TCAGTCGATGTTATATCCATGGGAT 59.279 40.000 13.02 8.57 45.40 3.85
2843 3127 5.083821 TCAGTCGATGTTATATCCATGGGA 58.916 41.667 13.02 0.00 35.55 4.37
2844 3128 5.185828 TCTCAGTCGATGTTATATCCATGGG 59.814 44.000 13.02 0.00 0.00 4.00
2845 3129 6.071672 AGTCTCAGTCGATGTTATATCCATGG 60.072 42.308 4.97 4.97 0.00 3.66
2846 3130 6.918626 AGTCTCAGTCGATGTTATATCCATG 58.081 40.000 0.00 0.00 0.00 3.66
2847 3131 7.531857 AAGTCTCAGTCGATGTTATATCCAT 57.468 36.000 0.00 0.00 0.00 3.41
2848 3132 6.293462 CGAAGTCTCAGTCGATGTTATATCCA 60.293 42.308 0.00 0.00 39.64 3.41
2849 3133 6.081049 CGAAGTCTCAGTCGATGTTATATCC 58.919 44.000 0.00 0.00 39.64 2.59
2850 3134 5.566016 GCGAAGTCTCAGTCGATGTTATATC 59.434 44.000 0.00 0.00 39.64 1.63
2851 3135 5.239744 AGCGAAGTCTCAGTCGATGTTATAT 59.760 40.000 0.00 0.00 39.64 0.86
2852 3136 4.575236 AGCGAAGTCTCAGTCGATGTTATA 59.425 41.667 0.00 0.00 39.64 0.98
2853 3137 3.378742 AGCGAAGTCTCAGTCGATGTTAT 59.621 43.478 0.00 0.00 39.64 1.89
2854 3138 2.747989 AGCGAAGTCTCAGTCGATGTTA 59.252 45.455 0.00 0.00 39.64 2.41
2855 3139 1.542030 AGCGAAGTCTCAGTCGATGTT 59.458 47.619 0.00 0.00 39.64 2.71
2856 3140 1.169577 AGCGAAGTCTCAGTCGATGT 58.830 50.000 0.00 0.00 39.64 3.06
2857 3141 3.242903 ACATAGCGAAGTCTCAGTCGATG 60.243 47.826 0.00 0.00 39.64 3.84
2858 3142 2.946329 ACATAGCGAAGTCTCAGTCGAT 59.054 45.455 0.00 0.00 39.64 3.59
2859 3143 2.352034 GACATAGCGAAGTCTCAGTCGA 59.648 50.000 0.00 0.00 39.64 4.20
2860 3144 2.353269 AGACATAGCGAAGTCTCAGTCG 59.647 50.000 0.00 0.00 40.96 4.18
2867 3151 3.726730 GTCGATTGAGACATAGCGAAGTC 59.273 47.826 0.00 0.00 40.65 3.01
2868 3152 3.489398 GGTCGATTGAGACATAGCGAAGT 60.489 47.826 0.00 0.00 42.62 3.01
2869 3153 3.046390 GGTCGATTGAGACATAGCGAAG 58.954 50.000 0.00 0.00 42.62 3.79
2870 3154 2.540973 CGGTCGATTGAGACATAGCGAA 60.541 50.000 0.00 0.00 42.62 4.70
2871 3155 1.002792 CGGTCGATTGAGACATAGCGA 60.003 52.381 0.00 0.00 42.62 4.93
2872 3156 1.002792 TCGGTCGATTGAGACATAGCG 60.003 52.381 0.00 0.00 42.62 4.26
2873 3157 2.290916 TCTCGGTCGATTGAGACATAGC 59.709 50.000 13.63 0.00 42.62 2.97
2879 3163 3.754850 TGTTAAGTCTCGGTCGATTGAGA 59.245 43.478 13.63 13.63 38.85 3.27
2880 3164 4.092771 TGTTAAGTCTCGGTCGATTGAG 57.907 45.455 9.83 9.83 0.00 3.02
2881 3165 4.216902 TCTTGTTAAGTCTCGGTCGATTGA 59.783 41.667 0.00 0.00 0.00 2.57
2882 3166 4.323868 GTCTTGTTAAGTCTCGGTCGATTG 59.676 45.833 0.00 0.00 0.00 2.67
2883 3167 4.217983 AGTCTTGTTAAGTCTCGGTCGATT 59.782 41.667 0.00 0.00 0.00 3.34
2884 3168 3.757493 AGTCTTGTTAAGTCTCGGTCGAT 59.243 43.478 0.00 0.00 0.00 3.59
2885 3169 3.144506 AGTCTTGTTAAGTCTCGGTCGA 58.855 45.455 0.00 0.00 0.00 4.20
2886 3170 3.555917 AGTCTTGTTAAGTCTCGGTCG 57.444 47.619 0.00 0.00 0.00 4.79
2887 3171 8.976986 TTTAATAGTCTTGTTAAGTCTCGGTC 57.023 34.615 0.00 0.00 0.00 4.79
2888 3172 9.939802 ATTTTAATAGTCTTGTTAAGTCTCGGT 57.060 29.630 0.00 0.00 0.00 4.69
2906 3190 9.787435 ACCGTAGCCAAGATATTCATTTTAATA 57.213 29.630 0.00 0.00 0.00 0.98
2907 3191 8.691661 ACCGTAGCCAAGATATTCATTTTAAT 57.308 30.769 0.00 0.00 0.00 1.40
2908 3192 8.402472 CAACCGTAGCCAAGATATTCATTTTAA 58.598 33.333 0.00 0.00 0.00 1.52
2909 3193 7.554835 ACAACCGTAGCCAAGATATTCATTTTA 59.445 33.333 0.00 0.00 0.00 1.52
2910 3194 6.377146 ACAACCGTAGCCAAGATATTCATTTT 59.623 34.615 0.00 0.00 0.00 1.82
2911 3195 5.885912 ACAACCGTAGCCAAGATATTCATTT 59.114 36.000 0.00 0.00 0.00 2.32
2912 3196 5.437060 ACAACCGTAGCCAAGATATTCATT 58.563 37.500 0.00 0.00 0.00 2.57
2913 3197 5.036117 ACAACCGTAGCCAAGATATTCAT 57.964 39.130 0.00 0.00 0.00 2.57
2914 3198 4.481368 ACAACCGTAGCCAAGATATTCA 57.519 40.909 0.00 0.00 0.00 2.57
2915 3199 5.465724 CCTTACAACCGTAGCCAAGATATTC 59.534 44.000 0.00 0.00 0.00 1.75
2916 3200 5.129815 TCCTTACAACCGTAGCCAAGATATT 59.870 40.000 0.00 0.00 0.00 1.28
2917 3201 4.652421 TCCTTACAACCGTAGCCAAGATAT 59.348 41.667 0.00 0.00 0.00 1.63
2918 3202 4.025360 TCCTTACAACCGTAGCCAAGATA 58.975 43.478 0.00 0.00 0.00 1.98
2919 3203 2.835764 TCCTTACAACCGTAGCCAAGAT 59.164 45.455 0.00 0.00 0.00 2.40
2920 3204 2.250031 TCCTTACAACCGTAGCCAAGA 58.750 47.619 0.00 0.00 0.00 3.02
2921 3205 2.754946 TCCTTACAACCGTAGCCAAG 57.245 50.000 0.00 0.00 0.00 3.61
2922 3206 2.835764 AGATCCTTACAACCGTAGCCAA 59.164 45.455 0.00 0.00 0.00 4.52
2923 3207 2.167693 CAGATCCTTACAACCGTAGCCA 59.832 50.000 0.00 0.00 0.00 4.75
2924 3208 2.822764 CAGATCCTTACAACCGTAGCC 58.177 52.381 0.00 0.00 0.00 3.93
2925 3209 2.202566 GCAGATCCTTACAACCGTAGC 58.797 52.381 0.00 0.00 0.00 3.58
2926 3210 3.119101 ACTGCAGATCCTTACAACCGTAG 60.119 47.826 23.35 0.00 0.00 3.51
2927 3211 2.829720 ACTGCAGATCCTTACAACCGTA 59.170 45.455 23.35 0.00 0.00 4.02
2928 3212 1.623811 ACTGCAGATCCTTACAACCGT 59.376 47.619 23.35 0.00 0.00 4.83
2929 3213 2.386661 ACTGCAGATCCTTACAACCG 57.613 50.000 23.35 0.00 0.00 4.44
2930 3214 3.440522 GGAAACTGCAGATCCTTACAACC 59.559 47.826 26.01 10.62 0.00 3.77
2931 3215 3.440522 GGGAAACTGCAGATCCTTACAAC 59.559 47.826 29.37 16.05 33.61 3.32
2932 3216 3.330701 AGGGAAACTGCAGATCCTTACAA 59.669 43.478 29.37 0.00 33.61 2.41
2933 3217 2.912956 AGGGAAACTGCAGATCCTTACA 59.087 45.455 29.37 0.00 33.61 2.41
2934 3218 3.274288 CAGGGAAACTGCAGATCCTTAC 58.726 50.000 29.37 19.20 40.97 2.34
2935 3219 3.634397 CAGGGAAACTGCAGATCCTTA 57.366 47.619 29.37 0.00 40.97 2.69
2936 3220 2.503895 CAGGGAAACTGCAGATCCTT 57.496 50.000 29.37 23.95 40.97 3.36
2946 3230 3.341270 TGTGGGCACAGGGAAACT 58.659 55.556 0.00 0.00 36.21 2.66
2954 3238 1.550524 GTCTACTGATCTGTGGGCACA 59.449 52.381 14.43 0.00 39.32 4.57
2955 3239 1.469940 CGTCTACTGATCTGTGGGCAC 60.470 57.143 18.26 8.96 0.00 5.01
2956 3240 0.817654 CGTCTACTGATCTGTGGGCA 59.182 55.000 18.26 0.00 0.00 5.36
2957 3241 0.818296 ACGTCTACTGATCTGTGGGC 59.182 55.000 14.91 12.45 0.00 5.36
2958 3242 2.358267 GGTACGTCTACTGATCTGTGGG 59.642 54.545 14.91 8.04 0.00 4.61
2959 3243 2.358267 GGGTACGTCTACTGATCTGTGG 59.642 54.545 14.91 12.13 0.00 4.17
2960 3244 2.031807 CGGGTACGTCTACTGATCTGTG 59.968 54.545 14.91 5.83 34.81 3.66
2961 3245 2.286872 CGGGTACGTCTACTGATCTGT 58.713 52.381 10.33 10.33 34.81 3.41
2962 3246 1.602851 CCGGGTACGTCTACTGATCTG 59.397 57.143 0.00 0.00 38.78 2.90
2963 3247 1.964552 CCGGGTACGTCTACTGATCT 58.035 55.000 0.00 0.00 38.78 2.75
2964 3248 0.310232 GCCGGGTACGTCTACTGATC 59.690 60.000 2.18 0.00 38.78 2.92
2965 3249 1.105759 GGCCGGGTACGTCTACTGAT 61.106 60.000 2.18 0.00 38.78 2.90
2966 3250 1.750399 GGCCGGGTACGTCTACTGA 60.750 63.158 2.18 0.00 38.78 3.41
2967 3251 2.803479 GGCCGGGTACGTCTACTG 59.197 66.667 2.18 0.00 38.78 2.74
3054 3338 9.487790 AAAATAATAAATTCATAACCCGGCATG 57.512 29.630 0.00 0.00 0.00 4.06
3090 3374 2.101582 GTCGAATGAGACCTAGGCACAT 59.898 50.000 9.30 9.28 35.22 3.21
3122 3406 6.429624 TCGATGTCACTTGACTGAAATTTTG 58.570 36.000 10.63 0.00 44.99 2.44
3126 3410 4.887748 ACTCGATGTCACTTGACTGAAAT 58.112 39.130 10.63 0.00 44.99 2.17
3128 3412 5.240844 TCTTACTCGATGTCACTTGACTGAA 59.759 40.000 10.63 0.00 44.99 3.02
3167 3522 0.606604 TTGCTAAGTCCCAGTCGACC 59.393 55.000 13.01 0.00 32.91 4.79
3197 3552 7.709613 CCTTACAACCGTAGCTAAGACATTTAT 59.290 37.037 8.37 0.00 0.00 1.40
3208 3563 2.159085 GCAGATCCTTACAACCGTAGCT 60.159 50.000 0.00 0.00 0.00 3.32
3210 3565 3.119101 ACTGCAGATCCTTACAACCGTAG 60.119 47.826 23.35 0.00 0.00 3.51
3211 3566 2.829720 ACTGCAGATCCTTACAACCGTA 59.170 45.455 23.35 0.00 0.00 4.02
3214 3569 5.453567 AAAAACTGCAGATCCTTACAACC 57.546 39.130 23.35 0.00 0.00 3.77
3251 3607 4.618489 CGCCATGACAGCTTTTTCTTAAAG 59.382 41.667 0.00 0.00 0.00 1.85
3582 3938 9.578439 GCATCTTTTAGCTTGTAATTCTGAATT 57.422 29.630 18.64 18.64 34.90 2.17
3583 3939 8.742777 TGCATCTTTTAGCTTGTAATTCTGAAT 58.257 29.630 0.00 0.00 0.00 2.57
3584 3940 8.023128 GTGCATCTTTTAGCTTGTAATTCTGAA 58.977 33.333 0.00 0.00 0.00 3.02
3600 3956 7.332678 GGAAGCTAATCAAATTGTGCATCTTTT 59.667 33.333 0.00 0.00 0.00 2.27
3620 3976 4.790718 AATTTTATACCCTCGGGAAGCT 57.209 40.909 9.43 0.00 38.96 3.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.