Multiple sequence alignment - TraesCS3A01G093800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G093800 chr3A 100.000 3512 0 0 1 3512 60192220 60195731 0.000000e+00 6486
1 TraesCS3A01G093800 chr3A 94.353 850 45 3 2664 3512 747298689 747299536 0.000000e+00 1301
2 TraesCS3A01G093800 chr3B 92.416 1569 102 8 962 2514 75074417 75072850 0.000000e+00 2222
3 TraesCS3A01G093800 chr3B 92.588 850 58 4 2664 3512 816247239 816248084 0.000000e+00 1216
4 TraesCS3A01G093800 chr3B 89.689 514 38 8 398 910 75074934 75074435 2.960000e-180 641
5 TraesCS3A01G093800 chr3B 95.775 71 3 0 1 71 75074998 75074928 7.970000e-22 115
6 TraesCS3A01G093800 chr3D 91.383 1613 105 16 962 2541 47754894 47756505 0.000000e+00 2178
7 TraesCS3A01G093800 chr3D 92.335 848 63 2 2664 3510 609358285 609357439 0.000000e+00 1205
8 TraesCS3A01G093800 chr3D 83.702 497 33 19 426 907 47754415 47754878 3.240000e-115 425
9 TraesCS3A01G093800 chr5D 96.353 850 29 2 2664 3512 435797599 435798447 0.000000e+00 1397
10 TraesCS3A01G093800 chr5D 91.515 165 14 0 237 401 53869537 53869701 9.810000e-56 228
11 TraesCS3A01G093800 chr5D 84.422 199 31 0 2064 2262 101422487 101422289 2.770000e-46 196
12 TraesCS3A01G093800 chr6A 93.412 850 54 2 2664 3512 219557445 219556597 0.000000e+00 1258
13 TraesCS3A01G093800 chr6A 89.941 169 17 0 235 403 33015815 33015647 5.900000e-53 219
14 TraesCS3A01G093800 chr5A 92.353 850 62 3 2664 3512 423923118 423923965 0.000000e+00 1206
15 TraesCS3A01G093800 chr5A 84.653 202 31 0 2061 2262 99103867 99104068 5.940000e-48 202
16 TraesCS3A01G093800 chr6B 91.294 850 72 2 2664 3512 204522041 204522889 0.000000e+00 1158
17 TraesCS3A01G093800 chr4A 91.103 843 73 2 2671 3512 706874335 706873494 0.000000e+00 1140
18 TraesCS3A01G093800 chr4A 90.303 165 16 0 237 401 725274559 725274395 2.120000e-52 217
19 TraesCS3A01G093800 chr4A 71.217 1011 238 40 1436 2421 681113156 681112174 4.600000e-49 206
20 TraesCS3A01G093800 chr4B 90.941 850 72 3 2664 3512 139514516 139513671 0.000000e+00 1138
21 TraesCS3A01G093800 chr4B 75.253 1188 262 29 1253 2424 599331400 599330229 1.430000e-148 536
22 TraesCS3A01G093800 chr4D 75.021 1181 265 27 1253 2418 474942369 474943534 1.440000e-143 520
23 TraesCS3A01G093800 chr4D 89.349 169 18 0 233 401 379863701 379863869 2.750000e-51 213
24 TraesCS3A01G093800 chr7D 92.121 165 13 0 237 401 94013705 94013869 2.110000e-57 233
25 TraesCS3A01G093800 chr7B 92.025 163 13 0 239 401 614279814 614279976 2.730000e-56 230
26 TraesCS3A01G093800 chr7B 89.881 168 16 1 235 402 429268605 429268771 7.640000e-52 215
27 TraesCS3A01G093800 chr2A 90.058 171 16 1 231 401 250729713 250729544 1.640000e-53 220
28 TraesCS3A01G093800 chr2B 89.881 168 15 1 234 401 797281664 797281499 7.640000e-52 215
29 TraesCS3A01G093800 chr2B 70.867 992 238 44 1436 2403 376014960 376013996 2.150000e-42 183
30 TraesCS3A01G093800 chr5B 85.427 199 29 0 2064 2262 109679672 109679474 1.280000e-49 207


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G093800 chr3A 60192220 60195731 3511 False 6486.000000 6486 100.000000 1 3512 1 chr3A.!!$F1 3511
1 TraesCS3A01G093800 chr3A 747298689 747299536 847 False 1301.000000 1301 94.353000 2664 3512 1 chr3A.!!$F2 848
2 TraesCS3A01G093800 chr3B 816247239 816248084 845 False 1216.000000 1216 92.588000 2664 3512 1 chr3B.!!$F1 848
3 TraesCS3A01G093800 chr3B 75072850 75074998 2148 True 992.666667 2222 92.626667 1 2514 3 chr3B.!!$R1 2513
4 TraesCS3A01G093800 chr3D 47754415 47756505 2090 False 1301.500000 2178 87.542500 426 2541 2 chr3D.!!$F1 2115
5 TraesCS3A01G093800 chr3D 609357439 609358285 846 True 1205.000000 1205 92.335000 2664 3510 1 chr3D.!!$R1 846
6 TraesCS3A01G093800 chr5D 435797599 435798447 848 False 1397.000000 1397 96.353000 2664 3512 1 chr5D.!!$F2 848
7 TraesCS3A01G093800 chr6A 219556597 219557445 848 True 1258.000000 1258 93.412000 2664 3512 1 chr6A.!!$R2 848
8 TraesCS3A01G093800 chr5A 423923118 423923965 847 False 1206.000000 1206 92.353000 2664 3512 1 chr5A.!!$F2 848
9 TraesCS3A01G093800 chr6B 204522041 204522889 848 False 1158.000000 1158 91.294000 2664 3512 1 chr6B.!!$F1 848
10 TraesCS3A01G093800 chr4A 706873494 706874335 841 True 1140.000000 1140 91.103000 2671 3512 1 chr4A.!!$R2 841
11 TraesCS3A01G093800 chr4A 681112174 681113156 982 True 206.000000 206 71.217000 1436 2421 1 chr4A.!!$R1 985
12 TraesCS3A01G093800 chr4B 139513671 139514516 845 True 1138.000000 1138 90.941000 2664 3512 1 chr4B.!!$R1 848
13 TraesCS3A01G093800 chr4B 599330229 599331400 1171 True 536.000000 536 75.253000 1253 2424 1 chr4B.!!$R2 1171
14 TraesCS3A01G093800 chr4D 474942369 474943534 1165 False 520.000000 520 75.021000 1253 2418 1 chr4D.!!$F2 1165

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
198 199 0.039074 GCGGCGTCATATCACTAGCT 60.039 55.0 9.37 0.0 0.0 3.32 F
1048 1068 0.592637 CACGAGCCACATTTTCTGCA 59.407 50.0 0.00 0.0 0.0 4.41 F
1141 1173 0.458260 GGTCGTGTTTTGGGTTTGCT 59.542 50.0 0.00 0.0 0.0 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1137 1169 0.321298 GGCGGAAGTGGAGTAAGCAA 60.321 55.0 0.0 0.0 0.00 3.91 R
2471 2539 0.454600 TAGCCACTTGGATCGACGAC 59.545 55.0 0.0 0.0 37.39 4.34 R
2551 2630 0.461339 CGCTACACGGGCAATTACCT 60.461 55.0 0.0 0.0 38.44 3.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 2.812011 GCCTCACTTCACGGTTGTATTT 59.188 45.455 0.00 0.00 0.00 1.40
53 54 7.221838 CACTTCACGGTTGTATTTGATTTTTGT 59.778 33.333 0.00 0.00 0.00 2.83
61 62 8.778358 GGTTGTATTTGATTTTTGTGCCAATAA 58.222 29.630 0.00 0.00 0.00 1.40
71 72 8.986477 ATTTTTGTGCCAATAATAAGTCTCAC 57.014 30.769 3.16 0.00 0.00 3.51
72 73 6.509418 TTTGTGCCAATAATAAGTCTCACC 57.491 37.500 0.00 0.00 0.00 4.02
73 74 5.435686 TGTGCCAATAATAAGTCTCACCT 57.564 39.130 0.00 0.00 0.00 4.00
74 75 6.553953 TGTGCCAATAATAAGTCTCACCTA 57.446 37.500 0.00 0.00 0.00 3.08
75 76 6.346096 TGTGCCAATAATAAGTCTCACCTAC 58.654 40.000 0.00 0.00 0.00 3.18
76 77 6.070481 TGTGCCAATAATAAGTCTCACCTACA 60.070 38.462 0.00 0.00 0.00 2.74
77 78 6.992715 GTGCCAATAATAAGTCTCACCTACAT 59.007 38.462 0.00 0.00 0.00 2.29
78 79 7.499232 GTGCCAATAATAAGTCTCACCTACATT 59.501 37.037 0.00 0.00 0.00 2.71
79 80 7.715249 TGCCAATAATAAGTCTCACCTACATTC 59.285 37.037 0.00 0.00 0.00 2.67
80 81 7.715249 GCCAATAATAAGTCTCACCTACATTCA 59.285 37.037 0.00 0.00 0.00 2.57
81 82 9.784531 CCAATAATAAGTCTCACCTACATTCAT 57.215 33.333 0.00 0.00 0.00 2.57
85 86 8.954950 AATAAGTCTCACCTACATTCATCAAG 57.045 34.615 0.00 0.00 0.00 3.02
86 87 6.365970 AAGTCTCACCTACATTCATCAAGT 57.634 37.500 0.00 0.00 0.00 3.16
87 88 5.971763 AGTCTCACCTACATTCATCAAGTC 58.028 41.667 0.00 0.00 0.00 3.01
88 89 5.105146 AGTCTCACCTACATTCATCAAGTCC 60.105 44.000 0.00 0.00 0.00 3.85
89 90 4.777366 TCTCACCTACATTCATCAAGTCCA 59.223 41.667 0.00 0.00 0.00 4.02
90 91 5.248248 TCTCACCTACATTCATCAAGTCCAA 59.752 40.000 0.00 0.00 0.00 3.53
91 92 5.491070 TCACCTACATTCATCAAGTCCAAG 58.509 41.667 0.00 0.00 0.00 3.61
92 93 5.013079 TCACCTACATTCATCAAGTCCAAGT 59.987 40.000 0.00 0.00 0.00 3.16
93 94 5.122869 CACCTACATTCATCAAGTCCAAGTG 59.877 44.000 0.00 0.00 0.00 3.16
94 95 5.221925 ACCTACATTCATCAAGTCCAAGTGT 60.222 40.000 0.00 0.00 0.00 3.55
95 96 5.352569 CCTACATTCATCAAGTCCAAGTGTC 59.647 44.000 0.00 0.00 0.00 3.67
96 97 3.748048 ACATTCATCAAGTCCAAGTGTCG 59.252 43.478 0.00 0.00 0.00 4.35
97 98 3.744238 TTCATCAAGTCCAAGTGTCGA 57.256 42.857 0.00 0.00 0.00 4.20
98 99 3.744238 TCATCAAGTCCAAGTGTCGAA 57.256 42.857 0.00 0.00 0.00 3.71
99 100 4.066646 TCATCAAGTCCAAGTGTCGAAA 57.933 40.909 0.00 0.00 0.00 3.46
100 101 4.058124 TCATCAAGTCCAAGTGTCGAAAG 58.942 43.478 0.00 0.00 0.00 2.62
101 102 3.812156 TCAAGTCCAAGTGTCGAAAGA 57.188 42.857 0.00 0.00 38.16 2.52
102 103 4.131649 TCAAGTCCAAGTGTCGAAAGAA 57.868 40.909 0.00 0.00 45.01 2.52
103 104 4.509616 TCAAGTCCAAGTGTCGAAAGAAA 58.490 39.130 0.00 0.00 45.01 2.52
104 105 4.938832 TCAAGTCCAAGTGTCGAAAGAAAA 59.061 37.500 0.00 0.00 45.01 2.29
105 106 5.588648 TCAAGTCCAAGTGTCGAAAGAAAAT 59.411 36.000 0.00 0.00 45.01 1.82
106 107 6.764085 TCAAGTCCAAGTGTCGAAAGAAAATA 59.236 34.615 0.00 0.00 45.01 1.40
107 108 7.281324 TCAAGTCCAAGTGTCGAAAGAAAATAA 59.719 33.333 0.00 0.00 45.01 1.40
108 109 6.956047 AGTCCAAGTGTCGAAAGAAAATAAC 58.044 36.000 0.00 0.00 45.01 1.89
109 110 6.540914 AGTCCAAGTGTCGAAAGAAAATAACA 59.459 34.615 0.00 0.00 45.01 2.41
110 111 7.066525 AGTCCAAGTGTCGAAAGAAAATAACAA 59.933 33.333 0.00 0.00 45.01 2.83
111 112 7.376072 GTCCAAGTGTCGAAAGAAAATAACAAG 59.624 37.037 0.00 0.00 45.01 3.16
112 113 6.636850 CCAAGTGTCGAAAGAAAATAACAAGG 59.363 38.462 0.00 0.00 45.01 3.61
113 114 6.937436 AGTGTCGAAAGAAAATAACAAGGT 57.063 33.333 0.00 0.00 45.01 3.50
114 115 8.339714 CAAGTGTCGAAAGAAAATAACAAGGTA 58.660 33.333 0.00 0.00 45.01 3.08
115 116 8.617290 AGTGTCGAAAGAAAATAACAAGGTAT 57.383 30.769 0.00 0.00 45.01 2.73
116 117 8.504005 AGTGTCGAAAGAAAATAACAAGGTATG 58.496 33.333 0.00 0.00 45.01 2.39
117 118 7.270579 GTGTCGAAAGAAAATAACAAGGTATGC 59.729 37.037 0.00 0.00 45.01 3.14
118 119 7.174253 TGTCGAAAGAAAATAACAAGGTATGCT 59.826 33.333 0.00 0.00 45.01 3.79
119 120 7.481798 GTCGAAAGAAAATAACAAGGTATGCTG 59.518 37.037 0.00 0.00 45.01 4.41
120 121 7.389330 TCGAAAGAAAATAACAAGGTATGCTGA 59.611 33.333 0.00 0.00 37.03 4.26
121 122 7.693951 CGAAAGAAAATAACAAGGTATGCTGAG 59.306 37.037 0.00 0.00 0.00 3.35
122 123 7.396540 AAGAAAATAACAAGGTATGCTGAGG 57.603 36.000 0.00 0.00 0.00 3.86
123 124 5.358160 AGAAAATAACAAGGTATGCTGAGGC 59.642 40.000 0.00 0.00 39.26 4.70
132 133 4.084265 TGCTGAGGCAACCACATG 57.916 55.556 0.00 0.00 46.36 3.21
133 134 1.455412 TGCTGAGGCAACCACATGA 59.545 52.632 0.00 0.00 46.36 3.07
134 135 0.178995 TGCTGAGGCAACCACATGAA 60.179 50.000 0.00 0.00 46.36 2.57
135 136 0.961019 GCTGAGGCAACCACATGAAA 59.039 50.000 0.00 0.00 38.54 2.69
136 137 1.336240 GCTGAGGCAACCACATGAAAC 60.336 52.381 0.00 0.00 38.54 2.78
137 138 1.955778 CTGAGGCAACCACATGAAACA 59.044 47.619 0.00 0.00 37.17 2.83
138 139 2.559668 CTGAGGCAACCACATGAAACAT 59.440 45.455 0.00 0.00 37.17 2.71
139 140 2.296752 TGAGGCAACCACATGAAACATG 59.703 45.455 0.00 9.72 37.17 3.21
140 141 1.001181 AGGCAACCACATGAAACATGC 59.999 47.619 0.00 3.23 37.17 4.06
141 142 1.431496 GCAACCACATGAAACATGCC 58.569 50.000 0.00 0.00 0.00 4.40
142 143 1.270199 GCAACCACATGAAACATGCCA 60.270 47.619 0.00 0.00 0.00 4.92
143 144 2.806019 GCAACCACATGAAACATGCCAA 60.806 45.455 0.00 0.00 0.00 4.52
144 145 3.464907 CAACCACATGAAACATGCCAAA 58.535 40.909 0.00 0.00 0.00 3.28
145 146 3.834489 ACCACATGAAACATGCCAAAA 57.166 38.095 0.00 0.00 0.00 2.44
146 147 4.148128 ACCACATGAAACATGCCAAAAA 57.852 36.364 0.00 0.00 0.00 1.94
147 148 4.128643 ACCACATGAAACATGCCAAAAAG 58.871 39.130 0.00 0.00 0.00 2.27
148 149 4.141756 ACCACATGAAACATGCCAAAAAGA 60.142 37.500 0.00 0.00 0.00 2.52
149 150 4.815308 CCACATGAAACATGCCAAAAAGAA 59.185 37.500 0.00 0.00 0.00 2.52
150 151 5.296283 CCACATGAAACATGCCAAAAAGAAA 59.704 36.000 0.00 0.00 0.00 2.52
151 152 6.183360 CCACATGAAACATGCCAAAAAGAAAA 60.183 34.615 0.00 0.00 0.00 2.29
152 153 7.249147 CACATGAAACATGCCAAAAAGAAAAA 58.751 30.769 0.00 0.00 0.00 1.94
153 154 7.429920 CACATGAAACATGCCAAAAAGAAAAAG 59.570 33.333 0.00 0.00 0.00 2.27
154 155 7.336427 ACATGAAACATGCCAAAAAGAAAAAGA 59.664 29.630 0.00 0.00 0.00 2.52
155 156 7.678947 TGAAACATGCCAAAAAGAAAAAGAA 57.321 28.000 0.00 0.00 0.00 2.52
156 157 8.103948 TGAAACATGCCAAAAAGAAAAAGAAA 57.896 26.923 0.00 0.00 0.00 2.52
157 158 8.571336 TGAAACATGCCAAAAAGAAAAAGAAAA 58.429 25.926 0.00 0.00 0.00 2.29
158 159 9.404348 GAAACATGCCAAAAAGAAAAAGAAAAA 57.596 25.926 0.00 0.00 0.00 1.94
159 160 8.969121 AACATGCCAAAAAGAAAAAGAAAAAG 57.031 26.923 0.00 0.00 0.00 2.27
160 161 7.537715 ACATGCCAAAAAGAAAAAGAAAAAGG 58.462 30.769 0.00 0.00 0.00 3.11
161 162 6.507958 TGCCAAAAAGAAAAAGAAAAAGGG 57.492 33.333 0.00 0.00 0.00 3.95
162 163 6.007076 TGCCAAAAAGAAAAAGAAAAAGGGT 58.993 32.000 0.00 0.00 0.00 4.34
163 164 6.072230 TGCCAAAAAGAAAAAGAAAAAGGGTG 60.072 34.615 0.00 0.00 0.00 4.61
164 165 6.150307 GCCAAAAAGAAAAAGAAAAAGGGTGA 59.850 34.615 0.00 0.00 0.00 4.02
165 166 7.148086 GCCAAAAAGAAAAAGAAAAAGGGTGAT 60.148 33.333 0.00 0.00 0.00 3.06
166 167 9.389755 CCAAAAAGAAAAAGAAAAAGGGTGATA 57.610 29.630 0.00 0.00 0.00 2.15
168 169 9.952030 AAAAAGAAAAAGAAAAAGGGTGATACA 57.048 25.926 0.00 0.00 0.00 2.29
169 170 9.952030 AAAAGAAAAAGAAAAAGGGTGATACAA 57.048 25.926 0.00 0.00 0.00 2.41
170 171 8.942338 AAGAAAAAGAAAAAGGGTGATACAAC 57.058 30.769 0.00 0.00 0.00 3.32
171 172 8.073467 AGAAAAAGAAAAAGGGTGATACAACA 57.927 30.769 0.00 0.00 0.00 3.33
172 173 7.979537 AGAAAAAGAAAAAGGGTGATACAACAC 59.020 33.333 0.00 0.00 39.70 3.32
173 174 7.418337 AAAAGAAAAAGGGTGATACAACACT 57.582 32.000 0.00 0.00 40.22 3.55
174 175 6.635030 AAGAAAAAGGGTGATACAACACTC 57.365 37.500 0.00 0.00 41.09 3.51
175 176 5.070685 AGAAAAAGGGTGATACAACACTCC 58.929 41.667 0.00 0.00 41.65 3.85
176 177 2.762535 AAGGGTGATACAACACTCCG 57.237 50.000 0.00 0.00 41.65 4.63
177 178 0.249398 AGGGTGATACAACACTCCGC 59.751 55.000 0.00 0.00 41.65 5.54
178 179 1.082117 GGGTGATACAACACTCCGCG 61.082 60.000 0.00 0.00 40.22 6.46
179 180 1.082117 GGTGATACAACACTCCGCGG 61.082 60.000 22.12 22.12 40.22 6.46
180 181 1.447140 TGATACAACACTCCGCGGC 60.447 57.895 23.51 2.12 0.00 6.53
181 182 2.508439 ATACAACACTCCGCGGCG 60.508 61.111 23.51 19.05 0.00 6.46
193 194 3.702555 GCGGCGGCGTCATATCAC 61.703 66.667 32.35 9.49 0.00 3.06
194 195 2.027605 CGGCGGCGTCATATCACT 59.972 61.111 24.74 0.00 0.00 3.41
195 196 1.284715 CGGCGGCGTCATATCACTA 59.715 57.895 24.74 0.00 0.00 2.74
196 197 0.729478 CGGCGGCGTCATATCACTAG 60.729 60.000 24.74 0.00 0.00 2.57
197 198 1.009389 GGCGGCGTCATATCACTAGC 61.009 60.000 6.63 0.00 0.00 3.42
198 199 0.039074 GCGGCGTCATATCACTAGCT 60.039 55.000 9.37 0.00 0.00 3.32
199 200 1.199327 GCGGCGTCATATCACTAGCTA 59.801 52.381 9.37 0.00 0.00 3.32
200 201 2.351447 GCGGCGTCATATCACTAGCTAA 60.351 50.000 9.37 0.00 0.00 3.09
201 202 3.493272 CGGCGTCATATCACTAGCTAAG 58.507 50.000 0.00 0.00 0.00 2.18
202 203 3.188667 CGGCGTCATATCACTAGCTAAGA 59.811 47.826 0.00 0.00 0.00 2.10
203 204 4.320275 CGGCGTCATATCACTAGCTAAGAA 60.320 45.833 0.00 0.00 0.00 2.52
204 205 5.157781 GGCGTCATATCACTAGCTAAGAAG 58.842 45.833 0.00 0.00 0.00 2.85
222 223 3.479269 CGAAGCAAGACGGGCGTC 61.479 66.667 0.00 0.00 44.86 5.19
223 224 2.357034 GAAGCAAGACGGGCGTCA 60.357 61.111 0.00 0.00 46.76 4.35
224 225 1.741770 GAAGCAAGACGGGCGTCAT 60.742 57.895 0.00 0.00 46.76 3.06
225 226 1.696832 GAAGCAAGACGGGCGTCATC 61.697 60.000 0.00 0.00 46.76 2.92
226 227 2.125512 GCAAGACGGGCGTCATCT 60.126 61.111 0.00 0.00 46.76 2.90
227 228 2.167861 GCAAGACGGGCGTCATCTC 61.168 63.158 0.00 0.00 46.76 2.75
228 229 1.215382 CAAGACGGGCGTCATCTCA 59.785 57.895 0.00 0.00 46.76 3.27
229 230 1.078759 CAAGACGGGCGTCATCTCAC 61.079 60.000 0.00 0.00 46.76 3.51
230 231 1.532604 AAGACGGGCGTCATCTCACA 61.533 55.000 0.00 0.00 46.76 3.58
231 232 1.805945 GACGGGCGTCATCTCACAC 60.806 63.158 0.00 0.00 44.02 3.82
232 233 2.261361 CGGGCGTCATCTCACACA 59.739 61.111 0.00 0.00 0.00 3.72
233 234 2.094659 CGGGCGTCATCTCACACAC 61.095 63.158 0.00 0.00 0.00 3.82
234 235 1.005037 GGGCGTCATCTCACACACA 60.005 57.895 0.00 0.00 0.00 3.72
235 236 0.602638 GGGCGTCATCTCACACACAA 60.603 55.000 0.00 0.00 0.00 3.33
236 237 1.225855 GGCGTCATCTCACACACAAA 58.774 50.000 0.00 0.00 0.00 2.83
237 238 1.195448 GGCGTCATCTCACACACAAAG 59.805 52.381 0.00 0.00 0.00 2.77
238 239 1.867233 GCGTCATCTCACACACAAAGT 59.133 47.619 0.00 0.00 0.00 2.66
239 240 3.057019 GCGTCATCTCACACACAAAGTA 58.943 45.455 0.00 0.00 0.00 2.24
240 241 3.120991 GCGTCATCTCACACACAAAGTAC 60.121 47.826 0.00 0.00 0.00 2.73
241 242 4.299155 CGTCATCTCACACACAAAGTACT 58.701 43.478 0.00 0.00 0.00 2.73
242 243 4.383052 CGTCATCTCACACACAAAGTACTC 59.617 45.833 0.00 0.00 0.00 2.59
243 244 4.686554 GTCATCTCACACACAAAGTACTCC 59.313 45.833 0.00 0.00 0.00 3.85
244 245 3.746045 TCTCACACACAAAGTACTCCC 57.254 47.619 0.00 0.00 0.00 4.30
245 246 3.305720 TCTCACACACAAAGTACTCCCT 58.694 45.455 0.00 0.00 0.00 4.20
246 247 3.321111 TCTCACACACAAAGTACTCCCTC 59.679 47.826 0.00 0.00 0.00 4.30
247 248 2.367567 TCACACACAAAGTACTCCCTCC 59.632 50.000 0.00 0.00 0.00 4.30
248 249 1.343465 ACACACAAAGTACTCCCTCCG 59.657 52.381 0.00 0.00 0.00 4.63
249 250 1.343465 CACACAAAGTACTCCCTCCGT 59.657 52.381 0.00 0.00 0.00 4.69
250 251 2.044758 ACACAAAGTACTCCCTCCGTT 58.955 47.619 0.00 0.00 0.00 4.44
251 252 2.436911 ACACAAAGTACTCCCTCCGTTT 59.563 45.455 0.00 0.00 0.00 3.60
252 253 3.064931 CACAAAGTACTCCCTCCGTTTC 58.935 50.000 0.00 0.00 0.00 2.78
253 254 2.970640 ACAAAGTACTCCCTCCGTTTCT 59.029 45.455 0.00 0.00 0.00 2.52
254 255 4.021719 CACAAAGTACTCCCTCCGTTTCTA 60.022 45.833 0.00 0.00 0.00 2.10
255 256 4.590222 ACAAAGTACTCCCTCCGTTTCTAA 59.410 41.667 0.00 0.00 0.00 2.10
256 257 5.070847 ACAAAGTACTCCCTCCGTTTCTAAA 59.929 40.000 0.00 0.00 0.00 1.85
257 258 6.171213 CAAAGTACTCCCTCCGTTTCTAAAT 58.829 40.000 0.00 0.00 0.00 1.40
258 259 7.038799 ACAAAGTACTCCCTCCGTTTCTAAATA 60.039 37.037 0.00 0.00 0.00 1.40
259 260 7.672122 AAGTACTCCCTCCGTTTCTAAATAT 57.328 36.000 0.00 0.00 0.00 1.28
260 261 8.773033 AAGTACTCCCTCCGTTTCTAAATATA 57.227 34.615 0.00 0.00 0.00 0.86
261 262 8.773033 AGTACTCCCTCCGTTTCTAAATATAA 57.227 34.615 0.00 0.00 0.00 0.98
262 263 8.858094 AGTACTCCCTCCGTTTCTAAATATAAG 58.142 37.037 0.00 0.00 0.00 1.73
263 264 7.672122 ACTCCCTCCGTTTCTAAATATAAGT 57.328 36.000 0.00 0.00 0.00 2.24
264 265 7.724287 ACTCCCTCCGTTTCTAAATATAAGTC 58.276 38.462 0.00 0.00 0.00 3.01
265 266 7.564292 ACTCCCTCCGTTTCTAAATATAAGTCT 59.436 37.037 0.00 0.00 0.00 3.24
266 267 8.315220 TCCCTCCGTTTCTAAATATAAGTCTT 57.685 34.615 0.00 0.00 0.00 3.01
267 268 8.765517 TCCCTCCGTTTCTAAATATAAGTCTTT 58.234 33.333 0.00 0.00 0.00 2.52
268 269 8.827677 CCCTCCGTTTCTAAATATAAGTCTTTG 58.172 37.037 0.00 0.00 0.00 2.77
269 270 9.379791 CCTCCGTTTCTAAATATAAGTCTTTGT 57.620 33.333 0.00 0.00 0.00 2.83
301 302 8.638685 TCAATTAGGTAAACTACATACGAAGC 57.361 34.615 0.00 0.00 0.00 3.86
302 303 8.252417 TCAATTAGGTAAACTACATACGAAGCA 58.748 33.333 0.00 0.00 0.00 3.91
303 304 8.875803 CAATTAGGTAAACTACATACGAAGCAA 58.124 33.333 0.00 0.00 0.00 3.91
304 305 9.439500 AATTAGGTAAACTACATACGAAGCAAA 57.561 29.630 0.00 0.00 0.00 3.68
305 306 8.830201 TTAGGTAAACTACATACGAAGCAAAA 57.170 30.769 0.00 0.00 0.00 2.44
306 307 7.916914 AGGTAAACTACATACGAAGCAAAAT 57.083 32.000 0.00 0.00 0.00 1.82
307 308 7.748847 AGGTAAACTACATACGAAGCAAAATG 58.251 34.615 0.00 0.00 0.00 2.32
308 309 7.604927 AGGTAAACTACATACGAAGCAAAATGA 59.395 33.333 0.00 0.00 0.00 2.57
309 310 8.231837 GGTAAACTACATACGAAGCAAAATGAA 58.768 33.333 0.00 0.00 0.00 2.57
310 311 9.769093 GTAAACTACATACGAAGCAAAATGAAT 57.231 29.630 0.00 0.00 0.00 2.57
311 312 8.673626 AAACTACATACGAAGCAAAATGAATG 57.326 30.769 0.00 0.00 0.00 2.67
312 313 7.609760 ACTACATACGAAGCAAAATGAATGA 57.390 32.000 0.00 0.00 0.00 2.57
313 314 8.039603 ACTACATACGAAGCAAAATGAATGAA 57.960 30.769 0.00 0.00 0.00 2.57
314 315 8.677300 ACTACATACGAAGCAAAATGAATGAAT 58.323 29.630 0.00 0.00 0.00 2.57
315 316 7.975866 ACATACGAAGCAAAATGAATGAATC 57.024 32.000 0.00 0.00 0.00 2.52
316 317 7.765307 ACATACGAAGCAAAATGAATGAATCT 58.235 30.769 0.00 0.00 0.00 2.40
317 318 8.892723 ACATACGAAGCAAAATGAATGAATCTA 58.107 29.630 0.00 0.00 0.00 1.98
318 319 9.162793 CATACGAAGCAAAATGAATGAATCTAC 57.837 33.333 0.00 0.00 0.00 2.59
319 320 7.144722 ACGAAGCAAAATGAATGAATCTACA 57.855 32.000 0.00 0.00 0.00 2.74
320 321 7.765307 ACGAAGCAAAATGAATGAATCTACAT 58.235 30.769 0.00 0.00 0.00 2.29
321 322 8.246180 ACGAAGCAAAATGAATGAATCTACATT 58.754 29.630 0.00 0.00 42.19 2.71
322 323 9.079833 CGAAGCAAAATGAATGAATCTACATTT 57.920 29.630 0.00 0.00 42.25 2.32
350 351 9.741647 AGATGCATCTATATACATTCGTATGTG 57.258 33.333 27.73 1.03 39.24 3.21
351 352 8.877808 ATGCATCTATATACATTCGTATGTGG 57.122 34.615 16.91 3.59 44.56 4.17
352 353 7.836842 TGCATCTATATACATTCGTATGTGGT 58.163 34.615 16.91 8.59 44.56 4.16
353 354 8.311109 TGCATCTATATACATTCGTATGTGGTT 58.689 33.333 16.91 5.39 44.56 3.67
354 355 8.808529 GCATCTATATACATTCGTATGTGGTTC 58.191 37.037 16.91 0.00 44.56 3.62
355 356 9.010366 CATCTATATACATTCGTATGTGGTTCG 57.990 37.037 16.91 4.16 44.56 3.95
356 357 8.102800 TCTATATACATTCGTATGTGGTTCGT 57.897 34.615 16.91 1.51 44.56 3.85
357 358 9.218440 TCTATATACATTCGTATGTGGTTCGTA 57.782 33.333 16.91 0.00 44.56 3.43
358 359 9.830294 CTATATACATTCGTATGTGGTTCGTAA 57.170 33.333 16.91 0.00 44.56 3.18
360 361 5.712217 ACATTCGTATGTGGTTCGTAATG 57.288 39.130 6.89 0.00 43.29 1.90
361 362 5.412640 ACATTCGTATGTGGTTCGTAATGA 58.587 37.500 6.89 0.00 43.29 2.57
362 363 5.870433 ACATTCGTATGTGGTTCGTAATGAA 59.130 36.000 6.89 0.00 43.29 2.57
363 364 6.369340 ACATTCGTATGTGGTTCGTAATGAAA 59.631 34.615 6.89 0.00 43.29 2.69
364 365 6.971527 TTCGTATGTGGTTCGTAATGAAAT 57.028 33.333 0.00 0.00 38.60 2.17
365 366 6.578020 TCGTATGTGGTTCGTAATGAAATC 57.422 37.500 0.00 0.00 38.60 2.17
366 367 6.334989 TCGTATGTGGTTCGTAATGAAATCT 58.665 36.000 0.00 0.00 38.60 2.40
367 368 6.474427 TCGTATGTGGTTCGTAATGAAATCTC 59.526 38.462 0.00 0.00 38.60 2.75
368 369 6.475727 CGTATGTGGTTCGTAATGAAATCTCT 59.524 38.462 0.00 0.00 38.60 3.10
369 370 7.646526 CGTATGTGGTTCGTAATGAAATCTCTA 59.353 37.037 0.00 0.00 38.60 2.43
370 371 7.772332 ATGTGGTTCGTAATGAAATCTCTAC 57.228 36.000 0.00 0.00 38.60 2.59
371 372 6.693466 TGTGGTTCGTAATGAAATCTCTACA 58.307 36.000 0.00 0.00 38.60 2.74
372 373 7.156000 TGTGGTTCGTAATGAAATCTCTACAA 58.844 34.615 0.00 0.00 38.60 2.41
373 374 7.658167 TGTGGTTCGTAATGAAATCTCTACAAA 59.342 33.333 0.00 0.00 38.60 2.83
374 375 8.500773 GTGGTTCGTAATGAAATCTCTACAAAA 58.499 33.333 0.00 0.00 38.60 2.44
375 376 9.058174 TGGTTCGTAATGAAATCTCTACAAAAA 57.942 29.630 0.00 0.00 38.60 1.94
376 377 9.326339 GGTTCGTAATGAAATCTCTACAAAAAC 57.674 33.333 0.00 0.00 38.60 2.43
410 411 4.348863 ACAGAGGGAGTATCAATCATGC 57.651 45.455 0.00 0.00 36.25 4.06
441 442 2.124695 CCTTTCCCGCCACCTAGC 60.125 66.667 0.00 0.00 0.00 3.42
456 457 2.578163 CTAGCAAGCGGGCAGTGCTA 62.578 60.000 16.11 20.69 46.52 3.49
488 489 0.603569 CGTCTTCACAGCCTACACCT 59.396 55.000 0.00 0.00 0.00 4.00
499 500 4.113354 CAGCCTACACCTTCGATTCTTAC 58.887 47.826 0.00 0.00 0.00 2.34
513 514 8.644318 TTCGATTCTTACCAGAAATAGCTTAC 57.356 34.615 0.00 0.00 42.53 2.34
515 516 6.144080 CGATTCTTACCAGAAATAGCTTACGG 59.856 42.308 0.00 0.00 42.53 4.02
521 522 4.141574 ACCAGAAATAGCTTACGGGCATTA 60.142 41.667 0.00 0.00 34.17 1.90
530 535 3.683340 GCTTACGGGCATTACCTATAAGC 59.317 47.826 11.86 11.86 45.81 3.09
559 564 2.254546 ATGAACAGTTGAGCCGTGAA 57.745 45.000 0.00 0.00 0.00 3.18
593 598 1.342174 TGAGGTACGGTGAAACACTCC 59.658 52.381 0.00 0.00 39.98 3.85
598 603 3.946907 GGTGAAACACTCCGGACG 58.053 61.111 0.00 0.00 39.98 4.79
599 604 1.364901 GGTGAAACACTCCGGACGA 59.635 57.895 0.00 0.00 39.98 4.20
630 635 3.065786 CCACCATTTCCATCATGAGTTCG 59.934 47.826 0.09 0.00 0.00 3.95
634 639 4.156556 CCATTTCCATCATGAGTTCGTGTT 59.843 41.667 0.09 0.00 34.59 3.32
635 640 4.747540 TTTCCATCATGAGTTCGTGTTG 57.252 40.909 0.09 3.89 34.17 3.33
741 747 5.571784 AAACATCCACATGCTCACATAAG 57.428 39.130 0.00 0.00 33.67 1.73
752 762 2.225019 GCTCACATAAGCATCATTCCCG 59.775 50.000 0.00 0.00 42.05 5.14
779 789 2.479837 TGTGAACGGCTTGTAAGAGTG 58.520 47.619 0.00 0.00 0.00 3.51
781 791 2.475487 GTGAACGGCTTGTAAGAGTGAC 59.525 50.000 0.00 0.00 0.00 3.67
782 792 1.719780 GAACGGCTTGTAAGAGTGACG 59.280 52.381 0.00 0.00 0.00 4.35
783 793 0.956633 ACGGCTTGTAAGAGTGACGA 59.043 50.000 0.00 0.00 0.00 4.20
785 795 1.337821 GGCTTGTAAGAGTGACGACG 58.662 55.000 0.00 0.00 0.00 5.12
841 851 3.445857 ACGGCGAATTAGTCTAGAAAGC 58.554 45.455 16.62 0.00 0.00 3.51
878 898 4.142026 ACACCGCTATGCATGTCTAACTTA 60.142 41.667 10.16 0.00 0.00 2.24
907 927 5.765182 CAGTCACCTTCCAACAAAATACTCT 59.235 40.000 0.00 0.00 0.00 3.24
909 929 5.181433 GTCACCTTCCAACAAAATACTCTCC 59.819 44.000 0.00 0.00 0.00 3.71
910 930 5.070001 CACCTTCCAACAAAATACTCTCCA 58.930 41.667 0.00 0.00 0.00 3.86
911 931 5.048713 CACCTTCCAACAAAATACTCTCCAC 60.049 44.000 0.00 0.00 0.00 4.02
912 932 5.163088 ACCTTCCAACAAAATACTCTCCACT 60.163 40.000 0.00 0.00 0.00 4.00
913 933 5.770162 CCTTCCAACAAAATACTCTCCACTT 59.230 40.000 0.00 0.00 0.00 3.16
914 934 6.294176 CCTTCCAACAAAATACTCTCCACTTG 60.294 42.308 0.00 0.00 0.00 3.16
915 935 5.070001 TCCAACAAAATACTCTCCACTTGG 58.930 41.667 0.00 0.00 0.00 3.61
916 936 5.070001 CCAACAAAATACTCTCCACTTGGA 58.930 41.667 0.00 0.00 43.08 3.53
938 958 2.768492 GCCCCGTACGTCGATCAGT 61.768 63.158 15.21 0.00 42.86 3.41
939 959 1.439353 GCCCCGTACGTCGATCAGTA 61.439 60.000 15.21 0.00 42.86 2.74
940 960 1.016627 CCCCGTACGTCGATCAGTAA 58.983 55.000 15.21 0.00 42.86 2.24
941 961 1.268234 CCCCGTACGTCGATCAGTAAC 60.268 57.143 15.21 0.00 42.86 2.50
942 962 1.398041 CCCGTACGTCGATCAGTAACA 59.602 52.381 15.21 0.00 42.86 2.41
943 963 2.538333 CCCGTACGTCGATCAGTAACAG 60.538 54.545 15.21 0.00 42.86 3.16
944 964 2.349580 CCGTACGTCGATCAGTAACAGA 59.650 50.000 15.21 0.00 42.86 3.41
945 965 3.340552 CGTACGTCGATCAGTAACAGAC 58.659 50.000 7.22 0.00 42.86 3.51
946 966 3.181527 CGTACGTCGATCAGTAACAGACA 60.182 47.826 7.22 0.00 42.86 3.41
947 967 3.198863 ACGTCGATCAGTAACAGACAC 57.801 47.619 0.00 0.00 32.57 3.67
948 968 2.551032 ACGTCGATCAGTAACAGACACA 59.449 45.455 0.00 0.00 32.57 3.72
949 969 2.909244 CGTCGATCAGTAACAGACACAC 59.091 50.000 0.00 0.00 32.57 3.82
950 970 3.243336 GTCGATCAGTAACAGACACACC 58.757 50.000 0.00 0.00 32.57 4.16
951 971 2.888414 TCGATCAGTAACAGACACACCA 59.112 45.455 0.00 0.00 0.00 4.17
952 972 3.319689 TCGATCAGTAACAGACACACCAA 59.680 43.478 0.00 0.00 0.00 3.67
953 973 3.428870 CGATCAGTAACAGACACACCAAC 59.571 47.826 0.00 0.00 0.00 3.77
954 974 4.632153 GATCAGTAACAGACACACCAACT 58.368 43.478 0.00 0.00 0.00 3.16
955 975 3.792401 TCAGTAACAGACACACCAACTG 58.208 45.455 0.00 0.00 37.62 3.16
956 976 3.196901 TCAGTAACAGACACACCAACTGT 59.803 43.478 0.00 0.00 45.02 3.55
957 977 4.403113 TCAGTAACAGACACACCAACTGTA 59.597 41.667 0.00 0.00 42.81 2.74
958 978 4.506654 CAGTAACAGACACACCAACTGTAC 59.493 45.833 0.00 0.00 42.81 2.90
959 979 3.620427 AACAGACACACCAACTGTACA 57.380 42.857 0.00 0.00 42.81 2.90
960 980 2.901249 ACAGACACACCAACTGTACAC 58.099 47.619 0.00 0.00 42.01 2.90
961 981 1.858458 CAGACACACCAACTGTACACG 59.142 52.381 0.00 0.00 0.00 4.49
982 1002 6.375174 ACACGTATATAATACTCCGTATGGCA 59.625 38.462 0.00 0.00 34.14 4.92
990 1010 2.202878 CCGTATGGCAGTGGTCGG 60.203 66.667 0.00 0.00 0.00 4.79
1048 1068 0.592637 CACGAGCCACATTTTCTGCA 59.407 50.000 0.00 0.00 0.00 4.41
1049 1069 0.877071 ACGAGCCACATTTTCTGCAG 59.123 50.000 7.63 7.63 0.00 4.41
1122 1154 2.904866 CTCCTCCTCCTCCTCGCG 60.905 72.222 0.00 0.00 0.00 5.87
1124 1156 4.824515 CCTCCTCCTCCTCGCGGT 62.825 72.222 6.13 0.00 0.00 5.68
1137 1169 2.825975 CGCGGTCGTGTTTTGGGTT 61.826 57.895 0.00 0.00 0.00 4.11
1141 1173 0.458260 GGTCGTGTTTTGGGTTTGCT 59.542 50.000 0.00 0.00 0.00 3.91
1147 1179 3.713288 GTGTTTTGGGTTTGCTTACTCC 58.287 45.455 0.00 0.00 0.00 3.85
1257 1289 2.580601 CGACGGGGACAAAGACCCT 61.581 63.158 0.00 0.00 45.07 4.34
1314 1346 3.775314 CGCTTCAACGCCGACATA 58.225 55.556 0.00 0.00 0.00 2.29
1413 1451 4.101448 CCCGAGCCCAACCTGGAG 62.101 72.222 0.00 0.00 40.96 3.86
1513 1563 2.449031 CTACGGCTGCCTCACCAACA 62.449 60.000 17.92 0.00 0.00 3.33
1836 1886 4.294523 GGCAACGACATGGCTGTA 57.705 55.556 0.00 0.00 42.22 2.74
1871 1921 3.299977 CCACCCACGGACAGACGA 61.300 66.667 0.00 0.00 37.61 4.20
2255 2320 1.153978 TGTTCATACCGGACGACGC 60.154 57.895 9.46 0.00 42.52 5.19
2461 2529 1.511305 GAGTCGATGCGGGAAGTCA 59.489 57.895 0.00 0.00 0.00 3.41
2468 2536 2.151202 GATGCGGGAAGTCAAAACTGA 58.849 47.619 0.00 0.00 35.36 3.41
2471 2539 0.512952 CGGGAAGTCAAAACTGAGCG 59.487 55.000 0.00 0.00 35.36 5.03
2475 2543 1.859080 GAAGTCAAAACTGAGCGTCGT 59.141 47.619 0.00 0.00 35.36 4.34
2478 2546 0.029700 TCAAAACTGAGCGTCGTCGA 59.970 50.000 6.17 0.00 39.71 4.20
2484 2552 3.984241 GAGCGTCGTCGATCCAAG 58.016 61.111 9.13 0.00 45.11 3.61
2514 2585 6.574350 AGACAAGATTTGGTCCGAGTAATAG 58.426 40.000 0.00 0.00 34.58 1.73
2515 2586 5.671493 ACAAGATTTGGTCCGAGTAATAGG 58.329 41.667 0.00 0.00 34.12 2.57
2516 2587 5.189145 ACAAGATTTGGTCCGAGTAATAGGT 59.811 40.000 0.00 0.00 34.12 3.08
2518 2589 5.671493 AGATTTGGTCCGAGTAATAGGTTG 58.329 41.667 0.00 0.00 0.00 3.77
2520 2591 1.483415 TGGTCCGAGTAATAGGTTGGC 59.517 52.381 0.00 0.00 0.00 4.52
2525 2604 3.131396 CCGAGTAATAGGTTGGCATGAC 58.869 50.000 0.00 0.00 0.00 3.06
2562 2641 7.933215 TTTCTTTCTAACTAGGTAATTGCCC 57.067 36.000 9.20 0.00 0.00 5.36
2563 2642 5.667466 TCTTTCTAACTAGGTAATTGCCCG 58.333 41.667 9.20 3.52 0.00 6.13
2564 2643 5.188359 TCTTTCTAACTAGGTAATTGCCCGT 59.812 40.000 9.20 4.18 0.00 5.28
2565 2644 4.395959 TCTAACTAGGTAATTGCCCGTG 57.604 45.455 9.20 2.50 0.00 4.94
2566 2645 3.770933 TCTAACTAGGTAATTGCCCGTGT 59.229 43.478 9.20 3.13 0.00 4.49
2567 2646 4.955450 TCTAACTAGGTAATTGCCCGTGTA 59.045 41.667 9.20 0.00 0.00 2.90
2568 2647 3.814005 ACTAGGTAATTGCCCGTGTAG 57.186 47.619 9.20 6.96 0.00 2.74
2569 2648 2.159000 ACTAGGTAATTGCCCGTGTAGC 60.159 50.000 9.20 0.00 0.00 3.58
2570 2649 0.461339 AGGTAATTGCCCGTGTAGCG 60.461 55.000 9.20 0.00 40.95 4.26
2571 2650 1.350665 GTAATTGCCCGTGTAGCGC 59.649 57.895 0.00 0.00 39.71 5.92
2572 2651 1.087771 GTAATTGCCCGTGTAGCGCT 61.088 55.000 17.26 17.26 39.71 5.92
2573 2652 0.460722 TAATTGCCCGTGTAGCGCTA 59.539 50.000 14.45 14.45 39.71 4.26
2574 2653 1.087771 AATTGCCCGTGTAGCGCTAC 61.088 55.000 35.20 35.20 39.71 3.58
2575 2654 3.975083 TTGCCCGTGTAGCGCTACG 62.975 63.158 35.15 29.07 38.85 3.51
2579 2658 3.903646 CGTGTAGCGCTACGGATG 58.096 61.111 35.15 23.30 38.85 3.51
2580 2659 1.063649 CGTGTAGCGCTACGGATGT 59.936 57.895 35.15 4.88 38.85 3.06
2581 2660 0.305617 CGTGTAGCGCTACGGATGTA 59.694 55.000 35.15 18.94 38.85 2.29
2582 2661 1.268184 CGTGTAGCGCTACGGATGTAA 60.268 52.381 35.15 18.26 38.85 2.41
2583 2662 2.792196 CGTGTAGCGCTACGGATGTAAA 60.792 50.000 35.15 17.58 38.85 2.01
2584 2663 2.533129 GTGTAGCGCTACGGATGTAAAC 59.467 50.000 35.15 23.73 38.85 2.01
2585 2664 2.164017 TGTAGCGCTACGGATGTAAACA 59.836 45.455 35.15 18.77 38.85 2.83
2586 2665 2.596904 AGCGCTACGGATGTAAACAT 57.403 45.000 8.99 0.00 39.70 2.71
2587 2666 3.720949 AGCGCTACGGATGTAAACATA 57.279 42.857 8.99 0.00 36.57 2.29
2588 2667 4.252971 AGCGCTACGGATGTAAACATAT 57.747 40.909 8.99 0.00 36.57 1.78
2589 2668 3.987868 AGCGCTACGGATGTAAACATATG 59.012 43.478 8.99 0.00 36.57 1.78
2590 2669 3.739300 GCGCTACGGATGTAAACATATGT 59.261 43.478 1.41 1.41 36.57 2.29
2591 2670 4.919168 GCGCTACGGATGTAAACATATGTA 59.081 41.667 9.21 0.00 36.57 2.29
2592 2671 5.164119 GCGCTACGGATGTAAACATATGTAC 60.164 44.000 9.21 5.27 36.57 2.90
2593 2672 5.058856 CGCTACGGATGTAAACATATGTACG 59.941 44.000 9.21 7.94 36.57 3.67
2594 2673 5.164119 GCTACGGATGTAAACATATGTACGC 60.164 44.000 9.21 2.86 36.57 4.42
2595 2674 3.732219 ACGGATGTAAACATATGTACGCG 59.268 43.478 9.21 3.53 36.57 6.01
2596 2675 3.120616 CGGATGTAAACATATGTACGCGG 59.879 47.826 12.47 2.48 36.57 6.46
2597 2676 4.300803 GGATGTAAACATATGTACGCGGA 58.699 43.478 12.47 0.00 36.57 5.54
2598 2677 4.927425 GGATGTAAACATATGTACGCGGAT 59.073 41.667 12.47 1.42 36.57 4.18
2599 2678 5.061808 GGATGTAAACATATGTACGCGGATC 59.938 44.000 12.47 6.41 36.57 3.36
2600 2679 4.934515 TGTAAACATATGTACGCGGATCA 58.065 39.130 12.47 6.84 0.00 2.92
2601 2680 5.349809 TGTAAACATATGTACGCGGATCAA 58.650 37.500 12.47 0.00 0.00 2.57
2602 2681 5.811100 TGTAAACATATGTACGCGGATCAAA 59.189 36.000 12.47 0.00 0.00 2.69
2603 2682 5.804692 AAACATATGTACGCGGATCAAAA 57.195 34.783 12.47 0.03 0.00 2.44
2604 2683 5.403897 AACATATGTACGCGGATCAAAAG 57.596 39.130 12.47 3.43 0.00 2.27
2605 2684 4.439057 ACATATGTACGCGGATCAAAAGT 58.561 39.130 12.47 4.01 0.00 2.66
2606 2685 5.593968 ACATATGTACGCGGATCAAAAGTA 58.406 37.500 12.47 0.00 0.00 2.24
2607 2686 6.220930 ACATATGTACGCGGATCAAAAGTAT 58.779 36.000 12.47 0.00 0.00 2.12
2608 2687 6.704493 ACATATGTACGCGGATCAAAAGTATT 59.296 34.615 12.47 0.00 0.00 1.89
2609 2688 7.225931 ACATATGTACGCGGATCAAAAGTATTT 59.774 33.333 12.47 0.00 42.41 1.40
2621 2700 3.653539 AAAGTATTTTGGTGGTTCCGC 57.346 42.857 0.00 0.00 31.62 5.54
2622 2701 2.279935 AGTATTTTGGTGGTTCCGCA 57.720 45.000 4.78 0.00 39.52 5.69
2623 2702 1.883926 AGTATTTTGGTGGTTCCGCAC 59.116 47.619 4.78 0.00 39.52 5.34
2624 2703 6.296017 AAAGTATTTTGGTGGTTCCGCACC 62.296 45.833 0.00 0.00 40.32 5.01
2631 2710 4.963815 GGTTCCGCACCAATTGTG 57.036 55.556 4.43 4.35 46.42 3.33
2643 2722 4.732784 CACCAATTGTGTAAGCATGTACC 58.267 43.478 4.43 0.00 40.26 3.34
2644 2723 4.458989 CACCAATTGTGTAAGCATGTACCT 59.541 41.667 4.43 0.00 40.26 3.08
2645 2724 5.048083 CACCAATTGTGTAAGCATGTACCTT 60.048 40.000 4.43 0.00 40.26 3.50
2646 2725 5.538433 ACCAATTGTGTAAGCATGTACCTTT 59.462 36.000 4.43 0.00 0.00 3.11
2647 2726 6.717540 ACCAATTGTGTAAGCATGTACCTTTA 59.282 34.615 4.43 0.00 0.00 1.85
2648 2727 7.094377 ACCAATTGTGTAAGCATGTACCTTTAG 60.094 37.037 4.43 0.00 0.00 1.85
2649 2728 7.120579 CCAATTGTGTAAGCATGTACCTTTAGA 59.879 37.037 4.43 0.00 0.00 2.10
2650 2729 8.511321 CAATTGTGTAAGCATGTACCTTTAGAA 58.489 33.333 0.00 0.00 0.00 2.10
2651 2730 8.807948 ATTGTGTAAGCATGTACCTTTAGAAT 57.192 30.769 0.00 0.00 0.00 2.40
2652 2731 8.630054 TTGTGTAAGCATGTACCTTTAGAATT 57.370 30.769 0.00 0.00 0.00 2.17
2653 2732 8.630054 TGTGTAAGCATGTACCTTTAGAATTT 57.370 30.769 0.00 0.00 0.00 1.82
2654 2733 8.511321 TGTGTAAGCATGTACCTTTAGAATTTG 58.489 33.333 0.00 0.00 0.00 2.32
2655 2734 7.484959 GTGTAAGCATGTACCTTTAGAATTTGC 59.515 37.037 0.00 0.00 0.00 3.68
2656 2735 6.588719 AAGCATGTACCTTTAGAATTTGCA 57.411 33.333 0.00 0.00 0.00 4.08
2657 2736 5.954335 AGCATGTACCTTTAGAATTTGCAC 58.046 37.500 0.00 0.00 0.00 4.57
2658 2737 5.476599 AGCATGTACCTTTAGAATTTGCACA 59.523 36.000 0.00 0.00 0.00 4.57
2659 2738 5.572896 GCATGTACCTTTAGAATTTGCACAC 59.427 40.000 0.00 0.00 0.00 3.82
2660 2739 6.676950 CATGTACCTTTAGAATTTGCACACA 58.323 36.000 0.00 0.00 0.00 3.72
2661 2740 6.067263 TGTACCTTTAGAATTTGCACACAC 57.933 37.500 0.00 0.00 0.00 3.82
2662 2741 5.590663 TGTACCTTTAGAATTTGCACACACA 59.409 36.000 0.00 0.00 0.00 3.72
2715 2794 0.176680 GTGCCTGACCGACTCATCAT 59.823 55.000 0.00 0.00 0.00 2.45
2749 2828 5.882000 TCTAGTTGCATATGAAAGTGTGCAT 59.118 36.000 13.35 0.00 44.04 3.96
2797 2876 6.292596 GCAAAAATTATTCTTGTGCGGTCAAA 60.293 34.615 0.00 0.00 0.00 2.69
2860 2939 9.859427 CATTTCCTTGAAGCAATATTGTTAAGA 57.141 29.630 16.61 3.12 0.00 2.10
2916 2998 7.389803 TTTTGAAATGTGTCTCTTCTGTTCA 57.610 32.000 0.00 0.00 0.00 3.18
2924 3006 3.960755 TGTCTCTTCTGTTCAGTTCTCCA 59.039 43.478 0.00 0.00 0.00 3.86
2927 3009 4.020751 TCTCTTCTGTTCAGTTCTCCATGG 60.021 45.833 4.97 4.97 0.00 3.66
3008 3090 9.167311 GAGATCCAGTATCGCCATATTTATTTT 57.833 33.333 0.00 0.00 39.79 1.82
3144 3226 9.269453 TGCTGATGATAGTCTGATTTTCATTAG 57.731 33.333 15.49 15.49 35.00 1.73
3176 3258 3.135348 CCCAAGTGCTCTCCATCTCAATA 59.865 47.826 0.00 0.00 0.00 1.90
3316 3399 2.653726 TCCAAGTTGAAGCTTTCAGCA 58.346 42.857 3.87 0.00 45.56 4.41
3327 3410 5.532406 TGAAGCTTTCAGCACAAAGTATCTT 59.468 36.000 0.00 4.63 45.56 2.40
3396 3479 1.979155 CAGTGAGAGAGCCCGTGGA 60.979 63.158 0.00 0.00 0.00 4.02
3435 3518 6.770785 TGGTCAGAAAAATTACTAGCTTGTGT 59.229 34.615 11.27 1.67 0.00 3.72
3469 3552 4.617808 TTTGTTGAAATCGGTCGTTCAA 57.382 36.364 5.45 5.45 40.52 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 6.553953 TGTAGGTGAGACTTATTATTGGCA 57.446 37.500 0.00 0.00 0.00 4.92
61 62 8.083828 ACTTGATGAATGTAGGTGAGACTTAT 57.916 34.615 0.00 0.00 0.00 1.73
71 72 5.248640 ACACTTGGACTTGATGAATGTAGG 58.751 41.667 0.00 0.00 0.00 3.18
72 73 5.062683 CGACACTTGGACTTGATGAATGTAG 59.937 44.000 0.00 0.00 0.00 2.74
73 74 4.929211 CGACACTTGGACTTGATGAATGTA 59.071 41.667 0.00 0.00 0.00 2.29
74 75 3.748048 CGACACTTGGACTTGATGAATGT 59.252 43.478 0.00 0.00 0.00 2.71
75 76 3.996363 TCGACACTTGGACTTGATGAATG 59.004 43.478 0.00 0.00 0.00 2.67
76 77 4.271696 TCGACACTTGGACTTGATGAAT 57.728 40.909 0.00 0.00 0.00 2.57
77 78 3.744238 TCGACACTTGGACTTGATGAA 57.256 42.857 0.00 0.00 0.00 2.57
78 79 3.744238 TTCGACACTTGGACTTGATGA 57.256 42.857 0.00 0.00 0.00 2.92
79 80 4.058124 TCTTTCGACACTTGGACTTGATG 58.942 43.478 0.00 0.00 0.00 3.07
80 81 4.336889 TCTTTCGACACTTGGACTTGAT 57.663 40.909 0.00 0.00 0.00 2.57
81 82 3.812156 TCTTTCGACACTTGGACTTGA 57.188 42.857 0.00 0.00 0.00 3.02
82 83 4.875544 TTTCTTTCGACACTTGGACTTG 57.124 40.909 0.00 0.00 0.00 3.16
83 84 7.066525 TGTTATTTTCTTTCGACACTTGGACTT 59.933 33.333 0.00 0.00 0.00 3.01
84 85 6.540914 TGTTATTTTCTTTCGACACTTGGACT 59.459 34.615 0.00 0.00 0.00 3.85
85 86 6.721321 TGTTATTTTCTTTCGACACTTGGAC 58.279 36.000 0.00 0.00 0.00 4.02
86 87 6.928979 TGTTATTTTCTTTCGACACTTGGA 57.071 33.333 0.00 0.00 0.00 3.53
87 88 6.636850 CCTTGTTATTTTCTTTCGACACTTGG 59.363 38.462 0.00 0.00 0.00 3.61
88 89 7.193595 ACCTTGTTATTTTCTTTCGACACTTG 58.806 34.615 0.00 0.00 0.00 3.16
89 90 7.329588 ACCTTGTTATTTTCTTTCGACACTT 57.670 32.000 0.00 0.00 0.00 3.16
90 91 6.937436 ACCTTGTTATTTTCTTTCGACACT 57.063 33.333 0.00 0.00 0.00 3.55
91 92 7.270579 GCATACCTTGTTATTTTCTTTCGACAC 59.729 37.037 0.00 0.00 0.00 3.67
92 93 7.174253 AGCATACCTTGTTATTTTCTTTCGACA 59.826 33.333 0.00 0.00 0.00 4.35
93 94 7.481798 CAGCATACCTTGTTATTTTCTTTCGAC 59.518 37.037 0.00 0.00 0.00 4.20
94 95 7.389330 TCAGCATACCTTGTTATTTTCTTTCGA 59.611 33.333 0.00 0.00 0.00 3.71
95 96 7.526608 TCAGCATACCTTGTTATTTTCTTTCG 58.473 34.615 0.00 0.00 0.00 3.46
96 97 7.970614 CCTCAGCATACCTTGTTATTTTCTTTC 59.029 37.037 0.00 0.00 0.00 2.62
97 98 7.577616 GCCTCAGCATACCTTGTTATTTTCTTT 60.578 37.037 0.00 0.00 39.53 2.52
98 99 6.127619 GCCTCAGCATACCTTGTTATTTTCTT 60.128 38.462 0.00 0.00 39.53 2.52
99 100 5.358160 GCCTCAGCATACCTTGTTATTTTCT 59.642 40.000 0.00 0.00 39.53 2.52
100 101 5.125417 TGCCTCAGCATACCTTGTTATTTTC 59.875 40.000 0.00 0.00 46.52 2.29
101 102 5.016173 TGCCTCAGCATACCTTGTTATTTT 58.984 37.500 0.00 0.00 46.52 1.82
102 103 4.599041 TGCCTCAGCATACCTTGTTATTT 58.401 39.130 0.00 0.00 46.52 1.40
103 104 4.235079 TGCCTCAGCATACCTTGTTATT 57.765 40.909 0.00 0.00 46.52 1.40
104 105 3.931907 TGCCTCAGCATACCTTGTTAT 57.068 42.857 0.00 0.00 46.52 1.89
116 117 0.961019 TTTCATGTGGTTGCCTCAGC 59.039 50.000 0.00 0.00 40.48 4.26
117 118 1.955778 TGTTTCATGTGGTTGCCTCAG 59.044 47.619 0.00 0.00 30.35 3.35
118 119 2.064434 TGTTTCATGTGGTTGCCTCA 57.936 45.000 0.00 0.00 0.00 3.86
119 120 2.927871 GCATGTTTCATGTGGTTGCCTC 60.928 50.000 10.68 0.00 0.00 4.70
120 121 1.001181 GCATGTTTCATGTGGTTGCCT 59.999 47.619 10.68 0.00 0.00 4.75
121 122 1.431496 GCATGTTTCATGTGGTTGCC 58.569 50.000 10.68 0.00 0.00 4.52
122 123 1.270199 TGGCATGTTTCATGTGGTTGC 60.270 47.619 10.68 0.00 0.00 4.17
123 124 2.816204 TGGCATGTTTCATGTGGTTG 57.184 45.000 10.68 0.00 0.00 3.77
124 125 3.834489 TTTGGCATGTTTCATGTGGTT 57.166 38.095 10.68 0.00 0.00 3.67
125 126 3.834489 TTTTGGCATGTTTCATGTGGT 57.166 38.095 10.68 0.00 0.00 4.16
126 127 4.378774 TCTTTTTGGCATGTTTCATGTGG 58.621 39.130 10.68 0.00 0.00 4.17
127 128 5.987777 TTCTTTTTGGCATGTTTCATGTG 57.012 34.783 10.68 0.00 0.00 3.21
128 129 6.998968 TTTTCTTTTTGGCATGTTTCATGT 57.001 29.167 10.68 0.00 0.00 3.21
129 130 7.695820 TCTTTTTCTTTTTGGCATGTTTCATG 58.304 30.769 5.49 5.49 0.00 3.07
130 131 7.862512 TCTTTTTCTTTTTGGCATGTTTCAT 57.137 28.000 0.00 0.00 0.00 2.57
131 132 7.678947 TTCTTTTTCTTTTTGGCATGTTTCA 57.321 28.000 0.00 0.00 0.00 2.69
132 133 8.962857 TTTTCTTTTTCTTTTTGGCATGTTTC 57.037 26.923 0.00 0.00 0.00 2.78
133 134 9.409312 CTTTTTCTTTTTCTTTTTGGCATGTTT 57.591 25.926 0.00 0.00 0.00 2.83
134 135 8.028354 CCTTTTTCTTTTTCTTTTTGGCATGTT 58.972 29.630 0.00 0.00 0.00 2.71
135 136 7.362834 CCCTTTTTCTTTTTCTTTTTGGCATGT 60.363 33.333 0.00 0.00 0.00 3.21
136 137 6.974048 CCCTTTTTCTTTTTCTTTTTGGCATG 59.026 34.615 0.00 0.00 0.00 4.06
137 138 6.663093 ACCCTTTTTCTTTTTCTTTTTGGCAT 59.337 30.769 0.00 0.00 0.00 4.40
138 139 6.007076 ACCCTTTTTCTTTTTCTTTTTGGCA 58.993 32.000 0.00 0.00 0.00 4.92
139 140 6.150307 TCACCCTTTTTCTTTTTCTTTTTGGC 59.850 34.615 0.00 0.00 0.00 4.52
140 141 7.680442 TCACCCTTTTTCTTTTTCTTTTTGG 57.320 32.000 0.00 0.00 0.00 3.28
142 143 9.952030 TGTATCACCCTTTTTCTTTTTCTTTTT 57.048 25.926 0.00 0.00 0.00 1.94
143 144 9.952030 TTGTATCACCCTTTTTCTTTTTCTTTT 57.048 25.926 0.00 0.00 0.00 2.27
144 145 9.378551 GTTGTATCACCCTTTTTCTTTTTCTTT 57.621 29.630 0.00 0.00 0.00 2.52
145 146 8.536175 TGTTGTATCACCCTTTTTCTTTTTCTT 58.464 29.630 0.00 0.00 0.00 2.52
146 147 7.979537 GTGTTGTATCACCCTTTTTCTTTTTCT 59.020 33.333 0.00 0.00 32.81 2.52
147 148 7.979537 AGTGTTGTATCACCCTTTTTCTTTTTC 59.020 33.333 0.00 0.00 38.91 2.29
148 149 7.847096 AGTGTTGTATCACCCTTTTTCTTTTT 58.153 30.769 0.00 0.00 38.91 1.94
149 150 7.417456 GGAGTGTTGTATCACCCTTTTTCTTTT 60.417 37.037 0.00 0.00 38.91 2.27
150 151 6.040504 GGAGTGTTGTATCACCCTTTTTCTTT 59.959 38.462 0.00 0.00 38.91 2.52
151 152 5.535030 GGAGTGTTGTATCACCCTTTTTCTT 59.465 40.000 0.00 0.00 38.91 2.52
152 153 5.070685 GGAGTGTTGTATCACCCTTTTTCT 58.929 41.667 0.00 0.00 38.91 2.52
153 154 4.083484 CGGAGTGTTGTATCACCCTTTTTC 60.083 45.833 0.00 0.00 38.91 2.29
154 155 3.818773 CGGAGTGTTGTATCACCCTTTTT 59.181 43.478 0.00 0.00 38.91 1.94
155 156 3.408634 CGGAGTGTTGTATCACCCTTTT 58.591 45.455 0.00 0.00 38.91 2.27
156 157 2.874457 GCGGAGTGTTGTATCACCCTTT 60.874 50.000 0.00 0.00 38.91 3.11
157 158 1.338769 GCGGAGTGTTGTATCACCCTT 60.339 52.381 0.00 0.00 38.91 3.95
158 159 0.249398 GCGGAGTGTTGTATCACCCT 59.751 55.000 0.00 0.00 38.91 4.34
159 160 1.082117 CGCGGAGTGTTGTATCACCC 61.082 60.000 0.00 0.00 38.91 4.61
160 161 1.082117 CCGCGGAGTGTTGTATCACC 61.082 60.000 24.07 0.00 38.91 4.02
161 162 1.693083 GCCGCGGAGTGTTGTATCAC 61.693 60.000 33.48 1.16 38.46 3.06
162 163 1.447140 GCCGCGGAGTGTTGTATCA 60.447 57.895 33.48 0.00 35.45 2.15
163 164 2.514013 CGCCGCGGAGTGTTGTATC 61.514 63.158 33.48 5.54 35.45 2.24
164 165 2.508439 CGCCGCGGAGTGTTGTAT 60.508 61.111 33.48 0.00 35.45 2.29
176 177 2.742710 TAGTGATATGACGCCGCCGC 62.743 60.000 0.00 0.00 38.22 6.53
177 178 0.729478 CTAGTGATATGACGCCGCCG 60.729 60.000 0.00 0.00 41.14 6.46
178 179 1.009389 GCTAGTGATATGACGCCGCC 61.009 60.000 0.00 0.00 0.00 6.13
179 180 0.039074 AGCTAGTGATATGACGCCGC 60.039 55.000 0.00 0.00 0.00 6.53
180 181 3.188667 TCTTAGCTAGTGATATGACGCCG 59.811 47.826 0.00 0.00 0.00 6.46
181 182 4.768130 TCTTAGCTAGTGATATGACGCC 57.232 45.455 0.00 0.00 0.00 5.68
182 183 4.619336 GCTTCTTAGCTAGTGATATGACGC 59.381 45.833 0.00 0.00 44.27 5.19
183 184 4.848841 CGCTTCTTAGCTAGTGATATGACG 59.151 45.833 0.00 0.00 45.51 4.35
184 185 6.003234 TCGCTTCTTAGCTAGTGATATGAC 57.997 41.667 0.00 0.00 45.51 3.06
185 186 6.635030 TTCGCTTCTTAGCTAGTGATATGA 57.365 37.500 0.00 0.00 45.51 2.15
186 187 5.344665 GCTTCGCTTCTTAGCTAGTGATATG 59.655 44.000 0.00 0.00 45.51 1.78
187 188 5.010112 TGCTTCGCTTCTTAGCTAGTGATAT 59.990 40.000 0.00 0.00 45.51 1.63
188 189 4.338400 TGCTTCGCTTCTTAGCTAGTGATA 59.662 41.667 0.00 0.00 45.51 2.15
189 190 3.131223 TGCTTCGCTTCTTAGCTAGTGAT 59.869 43.478 0.00 0.00 45.51 3.06
190 191 2.492088 TGCTTCGCTTCTTAGCTAGTGA 59.508 45.455 0.00 0.00 45.51 3.41
191 192 2.881074 TGCTTCGCTTCTTAGCTAGTG 58.119 47.619 0.00 0.00 45.51 2.74
192 193 3.193691 TCTTGCTTCGCTTCTTAGCTAGT 59.806 43.478 0.00 0.00 45.51 2.57
193 194 3.549873 GTCTTGCTTCGCTTCTTAGCTAG 59.450 47.826 0.00 0.00 45.51 3.42
194 195 3.512680 GTCTTGCTTCGCTTCTTAGCTA 58.487 45.455 0.00 0.00 45.51 3.32
195 196 2.342179 GTCTTGCTTCGCTTCTTAGCT 58.658 47.619 0.00 0.00 45.51 3.32
196 197 1.059835 CGTCTTGCTTCGCTTCTTAGC 59.940 52.381 0.00 0.00 44.21 3.09
197 198 1.656095 CCGTCTTGCTTCGCTTCTTAG 59.344 52.381 0.00 0.00 0.00 2.18
198 199 1.671850 CCCGTCTTGCTTCGCTTCTTA 60.672 52.381 0.00 0.00 0.00 2.10
199 200 0.951040 CCCGTCTTGCTTCGCTTCTT 60.951 55.000 0.00 0.00 0.00 2.52
200 201 1.374758 CCCGTCTTGCTTCGCTTCT 60.375 57.895 0.00 0.00 0.00 2.85
201 202 3.028366 GCCCGTCTTGCTTCGCTTC 62.028 63.158 0.00 0.00 0.00 3.86
202 203 3.050275 GCCCGTCTTGCTTCGCTT 61.050 61.111 0.00 0.00 0.00 4.68
205 206 3.479269 GACGCCCGTCTTGCTTCG 61.479 66.667 13.10 0.00 41.57 3.79
206 207 1.696832 GATGACGCCCGTCTTGCTTC 61.697 60.000 19.88 7.24 44.80 3.86
207 208 1.741770 GATGACGCCCGTCTTGCTT 60.742 57.895 19.88 2.38 44.80 3.91
208 209 2.125512 GATGACGCCCGTCTTGCT 60.126 61.111 19.88 4.40 44.80 3.91
209 210 2.125512 AGATGACGCCCGTCTTGC 60.126 61.111 19.88 10.17 44.80 4.01
210 211 1.078759 GTGAGATGACGCCCGTCTTG 61.079 60.000 19.88 0.00 44.80 3.02
211 212 1.215647 GTGAGATGACGCCCGTCTT 59.784 57.895 19.88 14.40 44.80 3.01
212 213 1.977009 TGTGAGATGACGCCCGTCT 60.977 57.895 19.88 7.30 44.80 4.18
213 214 1.805945 GTGTGAGATGACGCCCGTC 60.806 63.158 13.45 13.45 44.77 4.79
214 215 2.261671 GTGTGAGATGACGCCCGT 59.738 61.111 0.00 0.00 0.00 5.28
215 216 2.094659 GTGTGTGAGATGACGCCCG 61.095 63.158 0.00 0.00 0.00 6.13
216 217 0.602638 TTGTGTGTGAGATGACGCCC 60.603 55.000 0.00 0.00 0.00 6.13
217 218 1.195448 CTTTGTGTGTGAGATGACGCC 59.805 52.381 0.00 0.00 0.00 5.68
218 219 1.867233 ACTTTGTGTGTGAGATGACGC 59.133 47.619 0.00 0.00 0.00 5.19
219 220 4.299155 AGTACTTTGTGTGTGAGATGACG 58.701 43.478 0.00 0.00 0.00 4.35
220 221 4.686554 GGAGTACTTTGTGTGTGAGATGAC 59.313 45.833 0.00 0.00 0.00 3.06
221 222 4.262463 GGGAGTACTTTGTGTGTGAGATGA 60.262 45.833 0.00 0.00 0.00 2.92
222 223 3.997021 GGGAGTACTTTGTGTGTGAGATG 59.003 47.826 0.00 0.00 0.00 2.90
223 224 3.904339 AGGGAGTACTTTGTGTGTGAGAT 59.096 43.478 0.00 0.00 0.00 2.75
224 225 3.305720 AGGGAGTACTTTGTGTGTGAGA 58.694 45.455 0.00 0.00 0.00 3.27
225 226 3.555168 GGAGGGAGTACTTTGTGTGTGAG 60.555 52.174 0.00 0.00 0.00 3.51
226 227 2.367567 GGAGGGAGTACTTTGTGTGTGA 59.632 50.000 0.00 0.00 0.00 3.58
227 228 2.767505 GGAGGGAGTACTTTGTGTGTG 58.232 52.381 0.00 0.00 0.00 3.82
228 229 1.343465 CGGAGGGAGTACTTTGTGTGT 59.657 52.381 0.00 0.00 0.00 3.72
229 230 1.343465 ACGGAGGGAGTACTTTGTGTG 59.657 52.381 0.00 0.00 0.00 3.82
230 231 1.713297 ACGGAGGGAGTACTTTGTGT 58.287 50.000 0.00 0.00 0.00 3.72
231 232 2.833631 AACGGAGGGAGTACTTTGTG 57.166 50.000 0.00 0.00 0.00 3.33
232 233 2.970640 AGAAACGGAGGGAGTACTTTGT 59.029 45.455 0.00 0.00 0.00 2.83
233 234 3.679824 AGAAACGGAGGGAGTACTTTG 57.320 47.619 0.00 0.00 0.00 2.77
234 235 5.813513 TTTAGAAACGGAGGGAGTACTTT 57.186 39.130 0.00 0.00 0.00 2.66
235 236 7.672122 ATATTTAGAAACGGAGGGAGTACTT 57.328 36.000 0.00 0.00 0.00 2.24
236 237 8.773033 TTATATTTAGAAACGGAGGGAGTACT 57.227 34.615 0.00 0.00 0.00 2.73
237 238 8.637099 ACTTATATTTAGAAACGGAGGGAGTAC 58.363 37.037 0.00 0.00 0.00 2.73
238 239 8.773033 ACTTATATTTAGAAACGGAGGGAGTA 57.227 34.615 0.00 0.00 0.00 2.59
239 240 7.564292 AGACTTATATTTAGAAACGGAGGGAGT 59.436 37.037 0.00 0.00 0.00 3.85
240 241 7.953752 AGACTTATATTTAGAAACGGAGGGAG 58.046 38.462 0.00 0.00 0.00 4.30
241 242 7.909485 AGACTTATATTTAGAAACGGAGGGA 57.091 36.000 0.00 0.00 0.00 4.20
242 243 8.827677 CAAAGACTTATATTTAGAAACGGAGGG 58.172 37.037 0.00 0.00 0.00 4.30
243 244 9.379791 ACAAAGACTTATATTTAGAAACGGAGG 57.620 33.333 0.00 0.00 0.00 4.30
275 276 9.090692 GCTTCGTATGTAGTTTACCTAATTGAA 57.909 33.333 0.00 0.00 0.00 2.69
276 277 8.252417 TGCTTCGTATGTAGTTTACCTAATTGA 58.748 33.333 0.00 0.00 0.00 2.57
277 278 8.415192 TGCTTCGTATGTAGTTTACCTAATTG 57.585 34.615 0.00 0.00 0.00 2.32
278 279 9.439500 TTTGCTTCGTATGTAGTTTACCTAATT 57.561 29.630 0.00 0.00 0.00 1.40
279 280 9.439500 TTTTGCTTCGTATGTAGTTTACCTAAT 57.561 29.630 0.00 0.00 0.00 1.73
280 281 8.830201 TTTTGCTTCGTATGTAGTTTACCTAA 57.170 30.769 0.00 0.00 0.00 2.69
281 282 8.875803 CATTTTGCTTCGTATGTAGTTTACCTA 58.124 33.333 0.00 0.00 0.00 3.08
282 283 7.604927 TCATTTTGCTTCGTATGTAGTTTACCT 59.395 33.333 0.00 0.00 0.00 3.08
283 284 7.745015 TCATTTTGCTTCGTATGTAGTTTACC 58.255 34.615 0.00 0.00 0.00 2.85
284 285 9.769093 ATTCATTTTGCTTCGTATGTAGTTTAC 57.231 29.630 0.00 0.00 0.00 2.01
285 286 9.767684 CATTCATTTTGCTTCGTATGTAGTTTA 57.232 29.630 0.00 0.00 0.00 2.01
286 287 8.511321 TCATTCATTTTGCTTCGTATGTAGTTT 58.489 29.630 0.00 0.00 0.00 2.66
287 288 8.039603 TCATTCATTTTGCTTCGTATGTAGTT 57.960 30.769 0.00 0.00 0.00 2.24
288 289 7.609760 TCATTCATTTTGCTTCGTATGTAGT 57.390 32.000 0.00 0.00 0.00 2.73
289 290 9.162793 GATTCATTCATTTTGCTTCGTATGTAG 57.837 33.333 0.00 0.00 0.00 2.74
290 291 8.892723 AGATTCATTCATTTTGCTTCGTATGTA 58.107 29.630 0.00 0.00 0.00 2.29
291 292 7.765307 AGATTCATTCATTTTGCTTCGTATGT 58.235 30.769 0.00 0.00 0.00 2.29
292 293 9.162793 GTAGATTCATTCATTTTGCTTCGTATG 57.837 33.333 0.00 0.00 0.00 2.39
293 294 8.892723 TGTAGATTCATTCATTTTGCTTCGTAT 58.107 29.630 0.00 0.00 0.00 3.06
294 295 8.262715 TGTAGATTCATTCATTTTGCTTCGTA 57.737 30.769 0.00 0.00 0.00 3.43
295 296 7.144722 TGTAGATTCATTCATTTTGCTTCGT 57.855 32.000 0.00 0.00 0.00 3.85
296 297 8.624701 AATGTAGATTCATTCATTTTGCTTCG 57.375 30.769 0.00 0.00 33.43 3.79
324 325 9.741647 CACATACGAATGTATATAGATGCATCT 57.258 33.333 30.85 30.85 44.70 2.90
325 326 8.972349 CCACATACGAATGTATATAGATGCATC 58.028 37.037 19.37 19.37 44.70 3.91
326 327 8.478066 ACCACATACGAATGTATATAGATGCAT 58.522 33.333 0.00 0.00 44.70 3.96
327 328 7.836842 ACCACATACGAATGTATATAGATGCA 58.163 34.615 0.00 0.00 44.70 3.96
328 329 8.703604 AACCACATACGAATGTATATAGATGC 57.296 34.615 0.00 0.00 44.70 3.91
329 330 9.010366 CGAACCACATACGAATGTATATAGATG 57.990 37.037 0.00 0.00 44.70 2.90
330 331 8.737175 ACGAACCACATACGAATGTATATAGAT 58.263 33.333 0.00 0.00 44.70 1.98
331 332 8.102800 ACGAACCACATACGAATGTATATAGA 57.897 34.615 0.00 0.00 44.70 1.98
332 333 9.830294 TTACGAACCACATACGAATGTATATAG 57.170 33.333 0.00 0.00 44.70 1.31
334 335 9.135843 CATTACGAACCACATACGAATGTATAT 57.864 33.333 0.00 0.00 44.70 0.86
335 336 8.351461 TCATTACGAACCACATACGAATGTATA 58.649 33.333 0.00 0.00 44.70 1.47
336 337 7.204604 TCATTACGAACCACATACGAATGTAT 58.795 34.615 0.00 0.00 44.70 2.29
337 338 6.562518 TCATTACGAACCACATACGAATGTA 58.437 36.000 0.00 0.00 44.70 2.29
338 339 6.369340 TTTCATTACGAACCACATACGAATGT 59.631 34.615 0.00 0.00 39.09 2.71
339 340 5.959652 TCATTACGAACCACATACGAATG 57.040 39.130 0.00 0.00 39.17 2.67
340 341 6.971527 TTTCATTACGAACCACATACGAAT 57.028 33.333 0.00 0.00 31.73 3.34
341 342 6.814644 AGATTTCATTACGAACCACATACGAA 59.185 34.615 0.00 0.00 31.73 3.85
342 343 6.334989 AGATTTCATTACGAACCACATACGA 58.665 36.000 0.00 0.00 31.73 3.43
343 344 6.475727 AGAGATTTCATTACGAACCACATACG 59.524 38.462 0.00 0.00 31.73 3.06
344 345 7.772332 AGAGATTTCATTACGAACCACATAC 57.228 36.000 0.00 0.00 31.73 2.39
345 346 8.471609 TGTAGAGATTTCATTACGAACCACATA 58.528 33.333 0.00 0.00 31.73 2.29
346 347 7.327975 TGTAGAGATTTCATTACGAACCACAT 58.672 34.615 0.00 0.00 31.73 3.21
347 348 6.693466 TGTAGAGATTTCATTACGAACCACA 58.307 36.000 0.00 0.00 31.73 4.17
348 349 7.591006 TTGTAGAGATTTCATTACGAACCAC 57.409 36.000 0.00 0.00 31.73 4.16
349 350 8.610248 TTTTGTAGAGATTTCATTACGAACCA 57.390 30.769 0.00 0.00 31.73 3.67
350 351 9.326339 GTTTTTGTAGAGATTTCATTACGAACC 57.674 33.333 0.00 0.00 31.73 3.62
381 382 8.772250 TGATTGATACTCCCTCTGTTCTTAAAT 58.228 33.333 0.00 0.00 0.00 1.40
382 383 8.146053 TGATTGATACTCCCTCTGTTCTTAAA 57.854 34.615 0.00 0.00 0.00 1.52
383 384 7.733773 TGATTGATACTCCCTCTGTTCTTAA 57.266 36.000 0.00 0.00 0.00 1.85
384 385 7.687837 GCATGATTGATACTCCCTCTGTTCTTA 60.688 40.741 0.00 0.00 0.00 2.10
385 386 6.590068 CATGATTGATACTCCCTCTGTTCTT 58.410 40.000 0.00 0.00 0.00 2.52
386 387 5.454471 GCATGATTGATACTCCCTCTGTTCT 60.454 44.000 0.00 0.00 0.00 3.01
387 388 4.754114 GCATGATTGATACTCCCTCTGTTC 59.246 45.833 0.00 0.00 0.00 3.18
388 389 4.445448 GGCATGATTGATACTCCCTCTGTT 60.445 45.833 0.00 0.00 0.00 3.16
389 390 3.072184 GGCATGATTGATACTCCCTCTGT 59.928 47.826 0.00 0.00 0.00 3.41
390 391 3.672808 GGCATGATTGATACTCCCTCTG 58.327 50.000 0.00 0.00 0.00 3.35
391 392 2.301296 CGGCATGATTGATACTCCCTCT 59.699 50.000 0.00 0.00 0.00 3.69
392 393 2.693069 CGGCATGATTGATACTCCCTC 58.307 52.381 0.00 0.00 0.00 4.30
393 394 1.271054 GCGGCATGATTGATACTCCCT 60.271 52.381 0.00 0.00 0.00 4.20
394 395 1.160137 GCGGCATGATTGATACTCCC 58.840 55.000 0.00 0.00 0.00 4.30
395 396 1.160137 GGCGGCATGATTGATACTCC 58.840 55.000 3.07 0.00 0.00 3.85
396 397 2.175878 AGGCGGCATGATTGATACTC 57.824 50.000 13.08 0.00 0.00 2.59
397 398 2.634940 ACTAGGCGGCATGATTGATACT 59.365 45.455 13.08 0.00 0.00 2.12
398 399 3.045601 ACTAGGCGGCATGATTGATAC 57.954 47.619 13.08 0.00 0.00 2.24
399 400 3.070878 TCAACTAGGCGGCATGATTGATA 59.929 43.478 13.08 0.00 0.00 2.15
400 401 2.158769 TCAACTAGGCGGCATGATTGAT 60.159 45.455 13.08 0.00 0.00 2.57
401 402 1.209261 TCAACTAGGCGGCATGATTGA 59.791 47.619 13.08 12.37 0.00 2.57
402 403 1.667236 TCAACTAGGCGGCATGATTG 58.333 50.000 13.08 10.15 0.00 2.67
403 404 2.498167 GATCAACTAGGCGGCATGATT 58.502 47.619 13.08 0.00 31.24 2.57
410 411 1.475213 GGAAAGGGATCAACTAGGCGG 60.475 57.143 0.00 0.00 0.00 6.13
441 442 0.527565 AATTTAGCACTGCCCGCTTG 59.472 50.000 0.00 0.00 40.96 4.01
456 457 3.882888 TGTGAAGACGCAAGGAAGAATTT 59.117 39.130 0.00 0.00 46.39 1.82
488 489 7.434307 CGTAAGCTATTTCTGGTAAGAATCGAA 59.566 37.037 0.00 0.00 42.04 3.71
499 500 2.325583 TGCCCGTAAGCTATTTCTGG 57.674 50.000 0.00 0.00 0.00 3.86
513 514 3.674997 ACATGCTTATAGGTAATGCCCG 58.325 45.455 0.00 0.00 38.26 6.13
515 516 6.884280 AAGAACATGCTTATAGGTAATGCC 57.116 37.500 0.00 0.00 37.58 4.40
589 594 2.592574 TGTCGTGTCGTCCGGAGT 60.593 61.111 3.06 0.00 0.00 3.85
593 598 3.968568 TGGGTGTCGTGTCGTCCG 61.969 66.667 0.00 0.00 0.00 4.79
594 599 2.355481 GTGGGTGTCGTGTCGTCC 60.355 66.667 0.00 0.00 0.00 4.79
595 600 2.355481 GGTGGGTGTCGTGTCGTC 60.355 66.667 0.00 0.00 0.00 4.20
596 601 2.035237 AATGGTGGGTGTCGTGTCGT 62.035 55.000 0.00 0.00 0.00 4.34
597 602 0.882927 AAATGGTGGGTGTCGTGTCG 60.883 55.000 0.00 0.00 0.00 4.35
598 603 0.872388 GAAATGGTGGGTGTCGTGTC 59.128 55.000 0.00 0.00 0.00 3.67
599 604 0.536460 GGAAATGGTGGGTGTCGTGT 60.536 55.000 0.00 0.00 0.00 4.49
630 635 1.133915 TCCTCCCAACCTTGACAACAC 60.134 52.381 0.00 0.00 0.00 3.32
634 639 1.052124 ACGTCCTCCCAACCTTGACA 61.052 55.000 0.00 0.00 0.00 3.58
635 640 0.602905 CACGTCCTCCCAACCTTGAC 60.603 60.000 0.00 0.00 0.00 3.18
697 703 7.072454 TGTTTAGAATATGGGGCTGACTCTTAT 59.928 37.037 0.00 0.00 0.00 1.73
741 747 3.876914 TCACAAGAATACGGGAATGATGC 59.123 43.478 0.00 0.00 0.00 3.91
745 751 3.063452 CCGTTCACAAGAATACGGGAATG 59.937 47.826 0.00 0.00 38.83 2.67
752 762 5.407387 TCTTACAAGCCGTTCACAAGAATAC 59.593 40.000 0.00 0.00 35.92 1.89
785 795 4.843220 AGGTAGGTGTATATACGTGCAC 57.157 45.455 6.82 6.82 34.47 4.57
820 830 3.445857 GCTTTCTAGACTAATTCGCCGT 58.554 45.455 0.00 0.00 0.00 5.68
821 831 2.468040 CGCTTTCTAGACTAATTCGCCG 59.532 50.000 0.00 0.00 0.00 6.46
855 874 2.168521 AGTTAGACATGCATAGCGGTGT 59.831 45.455 0.00 0.00 33.88 4.16
878 898 5.930837 TTTGTTGGAAGGTGACTGATTTT 57.069 34.783 0.00 0.00 42.68 1.82
907 927 3.319198 GGGGCGTCTCCAAGTGGA 61.319 66.667 0.00 0.00 43.08 4.02
909 929 2.642254 TACGGGGCGTCTCCAAGTG 61.642 63.158 0.00 0.00 41.54 3.16
910 930 2.283388 TACGGGGCGTCTCCAAGT 60.283 61.111 0.00 0.00 41.54 3.16
911 931 2.183555 GTACGGGGCGTCTCCAAG 59.816 66.667 0.00 0.00 41.54 3.61
912 932 3.751246 CGTACGGGGCGTCTCCAA 61.751 66.667 7.57 0.00 41.54 3.53
918 938 3.880846 GATCGACGTACGGGGCGT 61.881 66.667 21.06 10.38 45.86 5.68
938 958 4.435425 GTGTACAGTTGGTGTGTCTGTTA 58.565 43.478 0.00 0.00 40.69 2.41
939 959 3.267483 GTGTACAGTTGGTGTGTCTGTT 58.733 45.455 0.00 0.00 40.69 3.16
940 960 2.737359 CGTGTACAGTTGGTGTGTCTGT 60.737 50.000 0.00 0.00 40.69 3.41
941 961 1.858458 CGTGTACAGTTGGTGTGTCTG 59.142 52.381 0.00 0.00 40.69 3.51
942 962 1.479323 ACGTGTACAGTTGGTGTGTCT 59.521 47.619 0.00 0.00 40.69 3.41
943 963 1.930567 ACGTGTACAGTTGGTGTGTC 58.069 50.000 0.00 0.00 40.69 3.67
944 964 3.738830 ATACGTGTACAGTTGGTGTGT 57.261 42.857 0.00 0.00 40.69 3.72
945 965 7.997107 ATTATATACGTGTACAGTTGGTGTG 57.003 36.000 0.00 0.00 40.69 3.82
946 966 8.906867 AGTATTATATACGTGTACAGTTGGTGT 58.093 33.333 0.00 0.00 43.86 4.16
947 967 9.390795 GAGTATTATATACGTGTACAGTTGGTG 57.609 37.037 0.00 0.00 0.00 4.17
948 968 8.571336 GGAGTATTATATACGTGTACAGTTGGT 58.429 37.037 0.00 0.00 0.00 3.67
949 969 7.747799 CGGAGTATTATATACGTGTACAGTTGG 59.252 40.741 0.00 0.00 0.00 3.77
950 970 8.285394 ACGGAGTATTATATACGTGTACAGTTG 58.715 37.037 0.00 0.00 41.94 3.16
951 971 8.383318 ACGGAGTATTATATACGTGTACAGTT 57.617 34.615 0.00 0.00 41.94 3.16
952 972 7.969536 ACGGAGTATTATATACGTGTACAGT 57.030 36.000 0.00 0.00 41.94 3.55
1042 1062 4.069232 CCGGTCGCCTCTGCAGAA 62.069 66.667 18.85 0.00 37.32 3.02
1049 1069 3.792053 ATTGATCGCCGGTCGCCTC 62.792 63.158 12.56 11.67 38.27 4.70
1122 1154 0.458260 AGCAAACCCAAAACACGACC 59.542 50.000 0.00 0.00 0.00 4.79
1124 1156 3.018149 AGTAAGCAAACCCAAAACACGA 58.982 40.909 0.00 0.00 0.00 4.35
1137 1169 0.321298 GGCGGAAGTGGAGTAAGCAA 60.321 55.000 0.00 0.00 0.00 3.91
1141 1173 0.606604 GACAGGCGGAAGTGGAGTAA 59.393 55.000 0.00 0.00 0.00 2.24
1147 1179 2.738521 CACGGACAGGCGGAAGTG 60.739 66.667 0.00 0.00 0.00 3.16
1314 1346 4.694233 CTGCCGCAGCCACTGAGT 62.694 66.667 7.61 0.00 38.69 3.41
1341 1379 4.424566 CACATGTTGGGCCAGCGC 62.425 66.667 15.95 0.00 0.00 5.92
1404 1442 1.607467 CCCTTTGCCCTCCAGGTTG 60.607 63.158 0.00 0.00 38.26 3.77
1405 1443 2.854076 CCCTTTGCCCTCCAGGTT 59.146 61.111 0.00 0.00 38.26 3.50
1408 1446 2.679716 CTCCCCTTTGCCCTCCAG 59.320 66.667 0.00 0.00 0.00 3.86
1409 1447 2.941025 CCTCCCCTTTGCCCTCCA 60.941 66.667 0.00 0.00 0.00 3.86
1410 1448 3.744155 CCCTCCCCTTTGCCCTCC 61.744 72.222 0.00 0.00 0.00 4.30
1836 1886 1.081513 TGGAAGTAGGTGGGGTATGGT 59.918 52.381 0.00 0.00 0.00 3.55
1839 1889 1.627195 GGGTGGAAGTAGGTGGGGTAT 60.627 57.143 0.00 0.00 0.00 2.73
1892 1942 1.086634 GTCGGCACTCTTGATCCTGC 61.087 60.000 0.00 0.00 0.00 4.85
1971 2021 1.005275 CTGGGCGATGATCTGCGAT 60.005 57.895 11.12 0.00 0.00 4.58
2187 2252 0.674534 GCCACCGGTACTGGAGATAG 59.325 60.000 27.93 11.08 0.00 2.08
2355 2423 2.264794 GGGTCAGCGTACACCAGG 59.735 66.667 2.82 0.00 33.91 4.45
2455 2523 1.859080 ACGACGCTCAGTTTTGACTTC 59.141 47.619 0.00 0.00 0.00 3.01
2461 2529 1.337821 GATCGACGACGCTCAGTTTT 58.662 50.000 0.00 0.00 39.58 2.43
2468 2536 1.154016 CACTTGGATCGACGACGCT 60.154 57.895 0.00 0.00 39.58 5.07
2471 2539 0.454600 TAGCCACTTGGATCGACGAC 59.545 55.000 0.00 0.00 37.39 4.34
2475 2543 1.847328 TGTCTAGCCACTTGGATCGA 58.153 50.000 0.00 0.00 37.39 3.59
2478 2546 4.851639 AATCTTGTCTAGCCACTTGGAT 57.148 40.909 0.00 0.00 37.39 3.41
2481 2549 4.074970 ACCAAATCTTGTCTAGCCACTTG 58.925 43.478 0.00 0.00 0.00 3.16
2483 2551 3.307762 GGACCAAATCTTGTCTAGCCACT 60.308 47.826 0.00 0.00 0.00 4.00
2484 2552 3.010420 GGACCAAATCTTGTCTAGCCAC 58.990 50.000 0.00 0.00 0.00 5.01
2514 2585 2.793278 AAAACTTCGTCATGCCAACC 57.207 45.000 0.00 0.00 0.00 3.77
2541 2620 5.293569 CACGGGCAATTACCTAGTTAGAAAG 59.706 44.000 0.00 0.00 0.00 2.62
2542 2621 5.180271 CACGGGCAATTACCTAGTTAGAAA 58.820 41.667 0.00 0.00 0.00 2.52
2543 2622 4.223477 ACACGGGCAATTACCTAGTTAGAA 59.777 41.667 0.00 0.00 0.00 2.10
2544 2623 3.770933 ACACGGGCAATTACCTAGTTAGA 59.229 43.478 0.00 0.00 0.00 2.10
2545 2624 4.133013 ACACGGGCAATTACCTAGTTAG 57.867 45.455 0.00 0.00 0.00 2.34
2546 2625 4.441913 GCTACACGGGCAATTACCTAGTTA 60.442 45.833 0.00 0.00 0.00 2.24
2547 2626 3.680754 GCTACACGGGCAATTACCTAGTT 60.681 47.826 0.00 0.00 0.00 2.24
2548 2627 2.159000 GCTACACGGGCAATTACCTAGT 60.159 50.000 0.00 0.00 0.00 2.57
2549 2628 2.480845 GCTACACGGGCAATTACCTAG 58.519 52.381 0.00 0.00 0.00 3.02
2550 2629 1.202440 CGCTACACGGGCAATTACCTA 60.202 52.381 0.00 0.00 38.44 3.08
2551 2630 0.461339 CGCTACACGGGCAATTACCT 60.461 55.000 0.00 0.00 38.44 3.08
2552 2631 2.011453 CGCTACACGGGCAATTACC 58.989 57.895 0.00 0.00 38.44 2.85
2563 2642 2.480224 TTACATCCGTAGCGCTACAC 57.520 50.000 38.41 22.22 35.87 2.90
2564 2643 2.164017 TGTTTACATCCGTAGCGCTACA 59.836 45.455 38.41 25.31 35.87 2.74
2565 2644 2.801063 TGTTTACATCCGTAGCGCTAC 58.199 47.619 32.93 32.93 0.00 3.58
2566 2645 3.720949 ATGTTTACATCCGTAGCGCTA 57.279 42.857 14.45 14.45 28.78 4.26
2567 2646 2.596904 ATGTTTACATCCGTAGCGCT 57.403 45.000 17.26 17.26 28.78 5.92
2568 2647 3.739300 ACATATGTTTACATCCGTAGCGC 59.261 43.478 1.41 0.00 37.76 5.92
2569 2648 5.058856 CGTACATATGTTTACATCCGTAGCG 59.941 44.000 14.77 5.78 37.76 4.26
2570 2649 5.164119 GCGTACATATGTTTACATCCGTAGC 60.164 44.000 14.77 0.79 37.76 3.58
2571 2650 5.058856 CGCGTACATATGTTTACATCCGTAG 59.941 44.000 14.77 0.00 37.76 3.51
2572 2651 4.911033 CGCGTACATATGTTTACATCCGTA 59.089 41.667 14.77 0.27 37.76 4.02
2573 2652 3.732219 CGCGTACATATGTTTACATCCGT 59.268 43.478 14.77 1.16 37.76 4.69
2574 2653 3.120616 CCGCGTACATATGTTTACATCCG 59.879 47.826 14.77 9.41 37.76 4.18
2575 2654 4.300803 TCCGCGTACATATGTTTACATCC 58.699 43.478 14.77 0.00 37.76 3.51
2576 2655 5.631929 TGATCCGCGTACATATGTTTACATC 59.368 40.000 14.77 8.95 37.76 3.06
2577 2656 5.534407 TGATCCGCGTACATATGTTTACAT 58.466 37.500 14.77 0.53 40.22 2.29
2578 2657 4.934515 TGATCCGCGTACATATGTTTACA 58.065 39.130 14.77 0.00 0.00 2.41
2579 2658 5.893512 TTGATCCGCGTACATATGTTTAC 57.106 39.130 14.77 6.18 0.00 2.01
2580 2659 6.535865 ACTTTTGATCCGCGTACATATGTTTA 59.464 34.615 14.77 0.00 0.00 2.01
2581 2660 5.353123 ACTTTTGATCCGCGTACATATGTTT 59.647 36.000 14.77 0.00 0.00 2.83
2582 2661 4.873827 ACTTTTGATCCGCGTACATATGTT 59.126 37.500 14.77 0.00 0.00 2.71
2583 2662 4.439057 ACTTTTGATCCGCGTACATATGT 58.561 39.130 13.93 13.93 0.00 2.29
2584 2663 6.706055 ATACTTTTGATCCGCGTACATATG 57.294 37.500 4.92 0.00 0.00 1.78
2585 2664 7.724305 AAATACTTTTGATCCGCGTACATAT 57.276 32.000 4.92 0.00 0.00 1.78
2586 2665 7.542534 AAAATACTTTTGATCCGCGTACATA 57.457 32.000 4.92 0.00 0.00 2.29
2587 2666 6.431198 AAAATACTTTTGATCCGCGTACAT 57.569 33.333 4.92 0.00 0.00 2.29
2588 2667 5.866335 AAAATACTTTTGATCCGCGTACA 57.134 34.783 4.92 0.00 0.00 2.90
2600 2679 3.385111 TGCGGAACCACCAAAATACTTTT 59.615 39.130 0.00 0.00 38.90 2.27
2601 2680 2.959707 TGCGGAACCACCAAAATACTTT 59.040 40.909 0.00 0.00 38.90 2.66
2602 2681 2.295070 GTGCGGAACCACCAAAATACTT 59.705 45.455 0.00 0.00 38.90 2.24
2603 2682 1.883926 GTGCGGAACCACCAAAATACT 59.116 47.619 0.00 0.00 38.90 2.12
2604 2683 2.341318 GTGCGGAACCACCAAAATAC 57.659 50.000 0.00 0.00 38.90 1.89
2622 2701 4.662278 AGGTACATGCTTACACAATTGGT 58.338 39.130 10.83 7.53 0.00 3.67
2623 2702 5.643379 AAGGTACATGCTTACACAATTGG 57.357 39.130 10.83 1.35 0.00 3.16
2624 2703 8.039603 TCTAAAGGTACATGCTTACACAATTG 57.960 34.615 3.24 3.24 0.00 2.32
2625 2704 8.630054 TTCTAAAGGTACATGCTTACACAATT 57.370 30.769 0.00 0.00 0.00 2.32
2626 2705 8.807948 ATTCTAAAGGTACATGCTTACACAAT 57.192 30.769 0.00 0.00 0.00 2.71
2627 2706 8.630054 AATTCTAAAGGTACATGCTTACACAA 57.370 30.769 0.00 0.00 0.00 3.33
2628 2707 8.511321 CAAATTCTAAAGGTACATGCTTACACA 58.489 33.333 0.00 0.00 0.00 3.72
2629 2708 7.484959 GCAAATTCTAAAGGTACATGCTTACAC 59.515 37.037 0.00 0.00 0.00 2.90
2630 2709 7.175816 TGCAAATTCTAAAGGTACATGCTTACA 59.824 33.333 0.00 0.00 32.74 2.41
2631 2710 7.484959 GTGCAAATTCTAAAGGTACATGCTTAC 59.515 37.037 0.00 0.00 32.74 2.34
2632 2711 7.175816 TGTGCAAATTCTAAAGGTACATGCTTA 59.824 33.333 0.00 0.00 32.74 3.09
2633 2712 6.015519 TGTGCAAATTCTAAAGGTACATGCTT 60.016 34.615 0.00 0.00 32.74 3.91
2634 2713 5.476599 TGTGCAAATTCTAAAGGTACATGCT 59.523 36.000 0.00 0.00 32.74 3.79
2635 2714 5.572896 GTGTGCAAATTCTAAAGGTACATGC 59.427 40.000 0.00 0.00 0.00 4.06
2636 2715 6.582295 GTGTGTGCAAATTCTAAAGGTACATG 59.418 38.462 0.00 0.00 0.00 3.21
2637 2716 6.264292 TGTGTGTGCAAATTCTAAAGGTACAT 59.736 34.615 0.00 0.00 0.00 2.29
2638 2717 5.590663 TGTGTGTGCAAATTCTAAAGGTACA 59.409 36.000 0.00 0.00 0.00 2.90
2639 2718 6.017440 TCTGTGTGTGCAAATTCTAAAGGTAC 60.017 38.462 0.00 0.00 0.00 3.34
2640 2719 6.058833 TCTGTGTGTGCAAATTCTAAAGGTA 58.941 36.000 0.00 0.00 0.00 3.08
2641 2720 4.887071 TCTGTGTGTGCAAATTCTAAAGGT 59.113 37.500 0.00 0.00 0.00 3.50
2642 2721 5.437289 TCTGTGTGTGCAAATTCTAAAGG 57.563 39.130 0.00 0.00 0.00 3.11
2643 2722 6.744537 GCTATCTGTGTGTGCAAATTCTAAAG 59.255 38.462 0.00 0.00 0.00 1.85
2644 2723 6.611381 GCTATCTGTGTGTGCAAATTCTAAA 58.389 36.000 0.00 0.00 0.00 1.85
2645 2724 5.163864 CGCTATCTGTGTGTGCAAATTCTAA 60.164 40.000 0.00 0.00 0.00 2.10
2646 2725 4.329801 CGCTATCTGTGTGTGCAAATTCTA 59.670 41.667 0.00 0.00 0.00 2.10
2647 2726 3.125829 CGCTATCTGTGTGTGCAAATTCT 59.874 43.478 0.00 0.00 0.00 2.40
2648 2727 3.120199 ACGCTATCTGTGTGTGCAAATTC 60.120 43.478 0.00 0.00 38.09 2.17
2649 2728 2.813754 ACGCTATCTGTGTGTGCAAATT 59.186 40.909 0.00 0.00 38.09 1.82
2650 2729 2.426522 ACGCTATCTGTGTGTGCAAAT 58.573 42.857 0.00 0.00 38.09 2.32
2651 2730 1.877637 ACGCTATCTGTGTGTGCAAA 58.122 45.000 0.00 0.00 38.09 3.68
2652 2731 1.877637 AACGCTATCTGTGTGTGCAA 58.122 45.000 0.00 0.00 39.64 4.08
2653 2732 2.734276 TAACGCTATCTGTGTGTGCA 57.266 45.000 0.00 0.00 39.64 4.57
2654 2733 4.318121 GCTAATAACGCTATCTGTGTGTGC 60.318 45.833 0.00 0.00 39.64 4.57
2655 2734 4.085568 CGCTAATAACGCTATCTGTGTGTG 60.086 45.833 0.00 0.00 39.64 3.82
2656 2735 4.042398 CGCTAATAACGCTATCTGTGTGT 58.958 43.478 0.00 0.00 39.64 3.72
2657 2736 4.287720 TCGCTAATAACGCTATCTGTGTG 58.712 43.478 0.00 0.00 39.64 3.82
2658 2737 4.537965 CTCGCTAATAACGCTATCTGTGT 58.462 43.478 0.00 0.00 41.81 3.72
2659 2738 3.914966 CCTCGCTAATAACGCTATCTGTG 59.085 47.826 0.00 0.00 0.00 3.66
2660 2739 3.819337 TCCTCGCTAATAACGCTATCTGT 59.181 43.478 0.00 0.00 0.00 3.41
2661 2740 4.407818 CTCCTCGCTAATAACGCTATCTG 58.592 47.826 0.00 0.00 0.00 2.90
2662 2741 3.119779 GCTCCTCGCTAATAACGCTATCT 60.120 47.826 0.00 0.00 35.14 1.98
2703 2782 2.753452 ACGTTGTCTATGATGAGTCGGT 59.247 45.455 0.00 0.00 0.00 4.69
2715 2794 6.859017 TCATATGCAACTAGAACGTTGTCTA 58.141 36.000 5.00 0.37 44.61 2.59
2749 2828 5.940470 GCCTTTCTTCCTTCTCTTCATTGTA 59.060 40.000 0.00 0.00 0.00 2.41
2797 2876 4.519350 TCGTAAGCCTTCATCATATCGAGT 59.481 41.667 0.00 0.00 37.18 4.18
2860 2939 8.017418 TGACAAAAGAAATATTGAAACCCAGT 57.983 30.769 0.00 0.00 0.00 4.00
2916 2998 2.244769 CCATTAACCCCCATGGAGAACT 59.755 50.000 15.22 0.00 42.49 3.01
2924 3006 1.152756 GCTCGCCATTAACCCCCAT 60.153 57.895 0.00 0.00 0.00 4.00
2927 3009 0.468648 AGTAGCTCGCCATTAACCCC 59.531 55.000 0.00 0.00 0.00 4.95
3008 3090 4.520492 GGAAAATCCTTCTGCACAGAGAAA 59.480 41.667 0.00 0.00 38.88 2.52
3144 3226 1.592400 GCACTTGGGTTGCTTGCAC 60.592 57.895 0.00 0.00 33.24 4.57
3176 3258 9.194101 GGCCTCACCATAAATTGACAGAATGTT 62.194 40.741 0.00 0.00 45.72 2.71
3316 3399 1.992557 TGGGAGGCCAAGATACTTTGT 59.007 47.619 5.01 0.00 0.00 2.83
3327 3410 3.177884 ACAGCAGTTGGGAGGCCA 61.178 61.111 5.01 0.00 0.00 5.36
3435 3518 4.612412 ACAAAACCTCGCGGCCGA 62.612 61.111 33.48 8.14 42.01 5.54
3469 3552 0.638292 TTGGGTAGGTCGGGATAGGT 59.362 55.000 0.00 0.00 0.00 3.08
3470 3553 1.623811 CATTGGGTAGGTCGGGATAGG 59.376 57.143 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.