Multiple sequence alignment - TraesCS3A01G093500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G093500 chr3A 100.000 3084 0 0 1 3084 59956808 59953725 0.000000e+00 5696.0
1 TraesCS3A01G093500 chr3A 88.632 1425 98 32 811 2195 60006719 60005319 0.000000e+00 1676.0
2 TraesCS3A01G093500 chr3A 88.581 1226 85 19 1079 2270 60029763 60028559 0.000000e+00 1437.0
3 TraesCS3A01G093500 chr3A 90.598 585 48 5 1438 2015 59823846 59823262 0.000000e+00 769.0
4 TraesCS3A01G093500 chr3A 89.027 483 37 6 2416 2892 60064834 60064362 4.430000e-163 584.0
5 TraesCS3A01G093500 chr3A 83.914 603 43 23 2320 2892 60003999 60003421 7.570000e-146 527.0
6 TraesCS3A01G093500 chr3A 84.928 418 40 8 830 1235 60067914 60067508 4.790000e-108 401.0
7 TraesCS3A01G093500 chr3A 84.810 316 45 1 1072 1387 59824241 59823929 6.420000e-82 315.0
8 TraesCS3A01G093500 chr3A 91.398 186 15 1 2899 3084 681997607 681997791 1.420000e-63 254.0
9 TraesCS3A01G093500 chr3A 84.286 210 10 7 615 816 60068152 60067958 1.890000e-42 183.0
10 TraesCS3A01G093500 chr3D 89.399 1481 116 30 815 2270 47709019 47707555 0.000000e+00 1827.0
11 TraesCS3A01G093500 chr3D 87.283 1439 121 35 833 2246 47704732 47703331 0.000000e+00 1587.0
12 TraesCS3A01G093500 chr3D 89.556 1216 81 23 990 2177 47741582 47740385 0.000000e+00 1500.0
13 TraesCS3A01G093500 chr3D 83.363 1112 113 42 1076 2123 47671040 47669937 0.000000e+00 963.0
14 TraesCS3A01G093500 chr3D 90.550 582 29 11 2330 2899 47678707 47678140 0.000000e+00 747.0
15 TraesCS3A01G093500 chr3D 83.051 177 11 5 640 816 47704942 47704785 3.210000e-30 143.0
16 TraesCS3A01G093500 chr3D 87.903 124 12 3 2761 2883 47706752 47706631 3.210000e-30 143.0
17 TraesCS3A01G093500 chr3D 88.596 114 11 2 2771 2883 47711858 47711746 1.490000e-28 137.0
18 TraesCS3A01G093500 chr3B 85.764 1721 130 54 612 2246 74761675 74763366 0.000000e+00 1714.0
19 TraesCS3A01G093500 chr3B 89.384 876 55 15 1395 2244 74805837 74806700 0.000000e+00 1068.0
20 TraesCS3A01G093500 chr3B 85.567 970 102 26 1076 2015 74817222 74818183 0.000000e+00 981.0
21 TraesCS3A01G093500 chr3B 88.788 553 41 4 830 1369 74805077 74805621 0.000000e+00 658.0
22 TraesCS3A01G093500 chr3B 83.943 629 43 20 2318 2899 74807218 74807835 1.620000e-152 549.0
23 TraesCS3A01G093500 chr3B 91.930 285 20 2 2610 2892 74766177 74766460 2.230000e-106 396.0
24 TraesCS3A01G093500 chr3B 84.227 317 20 11 2318 2616 74764399 74764703 6.510000e-72 281.0
25 TraesCS3A01G093500 chr7D 86.786 613 57 14 1 607 433877983 433877389 0.000000e+00 662.0
26 TraesCS3A01G093500 chr7D 89.247 186 19 1 2899 3084 58498172 58497988 6.650000e-57 231.0
27 TraesCS3A01G093500 chr5D 86.416 611 70 9 1 604 404491384 404490780 0.000000e+00 656.0
28 TraesCS3A01G093500 chr5D 85.294 612 72 14 1 607 15348414 15347816 1.570000e-172 616.0
29 TraesCS3A01G093500 chr5D 85.366 615 62 11 1 607 499408069 499407475 2.030000e-171 612.0
30 TraesCS3A01G093500 chr5D 84.355 620 80 11 1 613 404104080 404104689 2.650000e-165 592.0
31 TraesCS3A01G093500 chr6D 85.299 619 72 13 1 609 412489259 412488650 3.380000e-174 621.0
32 TraesCS3A01G093500 chr6D 85.082 610 62 17 1 607 431072206 431071623 2.050000e-166 595.0
33 TraesCS3A01G093500 chr2A 84.488 606 80 8 1 604 594993443 594994036 1.230000e-163 586.0
34 TraesCS3A01G093500 chr2A 89.894 188 18 1 2897 3084 93459310 93459124 1.110000e-59 241.0
35 TraesCS3A01G093500 chr2A 89.529 191 19 1 2894 3084 610557638 610557827 1.110000e-59 241.0
36 TraesCS3A01G093500 chr4B 84.279 617 72 19 1 602 569015609 569016215 2.060000e-161 579.0
37 TraesCS3A01G093500 chr4A 89.529 191 19 1 2894 3084 510447083 510447272 1.110000e-59 241.0
38 TraesCS3A01G093500 chr7B 89.785 186 18 1 2897 3082 677423226 677423042 1.430000e-58 237.0
39 TraesCS3A01G093500 chr7B 88.889 189 20 1 2894 3082 179237893 179237706 6.650000e-57 231.0
40 TraesCS3A01G093500 chr5B 89.785 186 18 1 2899 3084 564994997 564995181 1.430000e-58 237.0
41 TraesCS3A01G093500 chr1B 89.305 187 19 1 2896 3082 537462899 537462714 1.850000e-57 233.0
42 TraesCS3A01G093500 chr7A 82.075 106 19 0 502 607 204219950 204219845 1.180000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G093500 chr3A 59953725 59956808 3083 True 5696.000000 5696 100.000000 1 3084 1 chr3A.!!$R1 3083
1 TraesCS3A01G093500 chr3A 60028559 60029763 1204 True 1437.000000 1437 88.581000 1079 2270 1 chr3A.!!$R2 1191
2 TraesCS3A01G093500 chr3A 60003421 60006719 3298 True 1101.500000 1676 86.273000 811 2892 2 chr3A.!!$R4 2081
3 TraesCS3A01G093500 chr3A 59823262 59824241 979 True 542.000000 769 87.704000 1072 2015 2 chr3A.!!$R3 943
4 TraesCS3A01G093500 chr3A 60064362 60068152 3790 True 389.333333 584 86.080333 615 2892 3 chr3A.!!$R5 2277
5 TraesCS3A01G093500 chr3D 47740385 47741582 1197 True 1500.000000 1500 89.556000 990 2177 1 chr3D.!!$R3 1187
6 TraesCS3A01G093500 chr3D 47669937 47671040 1103 True 963.000000 963 83.363000 1076 2123 1 chr3D.!!$R1 1047
7 TraesCS3A01G093500 chr3D 47703331 47711858 8527 True 767.400000 1827 87.246400 640 2883 5 chr3D.!!$R4 2243
8 TraesCS3A01G093500 chr3D 47678140 47678707 567 True 747.000000 747 90.550000 2330 2899 1 chr3D.!!$R2 569
9 TraesCS3A01G093500 chr3B 74817222 74818183 961 False 981.000000 981 85.567000 1076 2015 1 chr3B.!!$F1 939
10 TraesCS3A01G093500 chr3B 74761675 74766460 4785 False 797.000000 1714 87.307000 612 2892 3 chr3B.!!$F2 2280
11 TraesCS3A01G093500 chr3B 74805077 74807835 2758 False 758.333333 1068 87.371667 830 2899 3 chr3B.!!$F3 2069
12 TraesCS3A01G093500 chr7D 433877389 433877983 594 True 662.000000 662 86.786000 1 607 1 chr7D.!!$R2 606
13 TraesCS3A01G093500 chr5D 404490780 404491384 604 True 656.000000 656 86.416000 1 604 1 chr5D.!!$R2 603
14 TraesCS3A01G093500 chr5D 15347816 15348414 598 True 616.000000 616 85.294000 1 607 1 chr5D.!!$R1 606
15 TraesCS3A01G093500 chr5D 499407475 499408069 594 True 612.000000 612 85.366000 1 607 1 chr5D.!!$R3 606
16 TraesCS3A01G093500 chr5D 404104080 404104689 609 False 592.000000 592 84.355000 1 613 1 chr5D.!!$F1 612
17 TraesCS3A01G093500 chr6D 412488650 412489259 609 True 621.000000 621 85.299000 1 609 1 chr6D.!!$R1 608
18 TraesCS3A01G093500 chr6D 431071623 431072206 583 True 595.000000 595 85.082000 1 607 1 chr6D.!!$R2 606
19 TraesCS3A01G093500 chr2A 594993443 594994036 593 False 586.000000 586 84.488000 1 604 1 chr2A.!!$F1 603
20 TraesCS3A01G093500 chr4B 569015609 569016215 606 False 579.000000 579 84.279000 1 602 1 chr4B.!!$F1 601

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
667 2665 0.034059 AATGGCCGAGATTAGCGAGG 59.966 55.0 0.00 0.0 0.00 4.63 F
722 2724 0.103208 GTCGCTCGACTGGATTCCAT 59.897 55.0 14.42 0.0 41.57 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1616 4046 0.326927 GGATGTTCTCCGGGTTCCAA 59.673 55.0 0.00 0.0 33.29 3.53 R
2565 7431 0.552363 TGCATGCATGATACAGGGGT 59.448 50.0 30.64 0.0 0.00 4.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
141 142 2.103042 GCGGAAGTTCATCTGCGCT 61.103 57.895 9.73 0.00 41.50 5.92
142 143 0.806102 GCGGAAGTTCATCTGCGCTA 60.806 55.000 9.73 0.00 41.50 4.26
143 144 1.858091 CGGAAGTTCATCTGCGCTAT 58.142 50.000 9.73 0.00 0.00 2.97
260 261 2.056481 ATCTCGGCGTAGTACGTGCC 62.056 60.000 22.81 15.43 44.73 5.01
401 410 2.591429 CGTGGCAGTGTGAAGGCA 60.591 61.111 0.00 0.00 38.03 4.75
408 417 0.464373 CAGTGTGAAGGCAGTGTGGT 60.464 55.000 0.00 0.00 35.64 4.16
435 444 0.887387 GGAATTTATAGGCGCGCCCA 60.887 55.000 44.47 34.90 36.58 5.36
477 488 2.358737 AGCTGTCGCCTTTTCCCG 60.359 61.111 0.00 0.00 36.60 5.14
495 510 2.423517 CGCGTGCACAGTCGTTTG 60.424 61.111 18.64 0.00 0.00 2.93
496 511 2.722188 GCGTGCACAGTCGTTTGC 60.722 61.111 18.64 5.45 39.33 3.68
497 512 2.052237 CGTGCACAGTCGTTTGCC 60.052 61.111 18.64 0.00 38.00 4.52
595 635 3.353836 TCTTTTGGCGCCGCTGTC 61.354 61.111 23.90 0.00 0.00 3.51
604 644 3.567797 GCCGCTGTCGAAGATGCC 61.568 66.667 0.00 0.00 40.67 4.40
609 649 1.539065 CGCTGTCGAAGATGCCCTTAT 60.539 52.381 0.00 0.00 40.67 1.73
613 653 4.561530 GCTGTCGAAGATGCCCTTATATGA 60.562 45.833 0.00 0.00 40.67 2.15
633 673 4.059511 TGATTAACCGACGAACACACAAT 58.940 39.130 0.00 0.00 0.00 2.71
667 2665 0.034059 AATGGCCGAGATTAGCGAGG 59.966 55.000 0.00 0.00 0.00 4.63
669 2667 2.417516 GCCGAGATTAGCGAGGCA 59.582 61.111 4.61 0.00 46.48 4.75
670 2668 1.005630 GCCGAGATTAGCGAGGCAT 60.006 57.895 4.61 0.00 46.48 4.40
671 2669 1.011451 GCCGAGATTAGCGAGGCATC 61.011 60.000 4.61 0.00 46.48 3.91
672 2670 0.315251 CCGAGATTAGCGAGGCATCA 59.685 55.000 0.00 0.00 0.00 3.07
673 2671 1.067283 CCGAGATTAGCGAGGCATCAT 60.067 52.381 0.00 0.00 0.00 2.45
674 2672 2.257894 CGAGATTAGCGAGGCATCATC 58.742 52.381 0.00 0.00 0.00 2.92
675 2673 2.352127 CGAGATTAGCGAGGCATCATCA 60.352 50.000 0.00 0.00 0.00 3.07
722 2724 0.103208 GTCGCTCGACTGGATTCCAT 59.897 55.000 14.42 0.00 41.57 3.41
781 2786 0.316841 CGGTTCCACCACCCAATTTG 59.683 55.000 0.00 0.00 38.47 2.32
807 2812 5.411669 GGGTTCCACTGTAATCTAAGTGTTG 59.588 44.000 2.48 0.00 41.85 3.33
841 2890 1.794714 ACACCCGAGAGATTATGGCT 58.205 50.000 0.00 0.00 0.00 4.75
848 2897 4.244066 CCGAGAGATTATGGCTGATTCTG 58.756 47.826 0.00 0.00 0.00 3.02
858 2907 1.725665 CTGATTCTGCCCATGTGCG 59.274 57.895 0.00 0.00 0.00 5.34
956 3021 4.719106 AGCAGGGCACAGCAGCTC 62.719 66.667 5.99 0.00 33.33 4.09
958 3023 4.694233 CAGGGCACAGCAGCTCGT 62.694 66.667 0.00 0.00 40.85 4.18
971 3041 1.878522 GCTCGTCGGCACCACTATG 60.879 63.158 0.00 0.00 0.00 2.23
988 3058 0.249120 ATGAAACCGCGACATCTCCA 59.751 50.000 8.23 0.00 0.00 3.86
989 3059 0.669318 TGAAACCGCGACATCTCCAC 60.669 55.000 8.23 0.00 0.00 4.02
990 3060 0.669318 GAAACCGCGACATCTCCACA 60.669 55.000 8.23 0.00 0.00 4.17
991 3061 0.949105 AAACCGCGACATCTCCACAC 60.949 55.000 8.23 0.00 0.00 3.82
992 3062 2.094757 AACCGCGACATCTCCACACA 62.095 55.000 8.23 0.00 0.00 3.72
993 3063 2.094659 CCGCGACATCTCCACACAC 61.095 63.158 8.23 0.00 0.00 3.82
1052 3134 4.927049 TCATTTGATTCCAGGAAGCTCTT 58.073 39.130 18.35 0.00 0.00 2.85
1067 3156 2.869233 CTCTTCAGTCTAGAGCAGCC 57.131 55.000 0.00 0.00 33.37 4.85
1068 3157 2.098614 CTCTTCAGTCTAGAGCAGCCA 58.901 52.381 0.00 0.00 33.37 4.75
1069 3158 2.098614 TCTTCAGTCTAGAGCAGCCAG 58.901 52.381 0.00 0.00 0.00 4.85
1070 3159 0.534412 TTCAGTCTAGAGCAGCCAGC 59.466 55.000 0.00 0.00 46.19 4.85
1103 3192 2.980233 GGCGCTTTCTGGCTGTGT 60.980 61.111 7.64 0.00 0.00 3.72
1171 3260 2.746472 GCTGGACAAGAGGTTCAACACT 60.746 50.000 0.00 0.00 33.57 3.55
1207 3300 2.112898 GGGATACGACGCTTCTGGA 58.887 57.895 0.00 0.00 37.60 3.86
1231 3324 2.356535 GGAGGTGGTGATGCTCAATCTT 60.357 50.000 0.00 0.00 36.15 2.40
1436 3860 5.493133 TGACTCAGCGTTGTTGTTAATTT 57.507 34.783 0.00 0.00 0.00 1.82
1448 3872 7.432252 CGTTGTTGTTAATTTCAGCTTTCTTCT 59.568 33.333 0.00 0.00 0.00 2.85
1616 4046 3.844211 ACTACCACACCTACACCATCATT 59.156 43.478 0.00 0.00 0.00 2.57
1891 4321 1.080995 ATGAAGAAGCAGCTCGACGC 61.081 55.000 0.00 0.00 39.57 5.19
1969 4399 0.179119 GACGATGGGTACAGGTTCCG 60.179 60.000 0.00 0.00 0.00 4.30
1977 4407 3.549433 TACAGGTTCCGGCAGGGGA 62.549 63.158 2.05 0.00 38.33 4.81
1979 4409 3.411517 AGGTTCCGGCAGGGGATG 61.412 66.667 2.05 0.00 35.62 3.51
2004 4434 1.518133 GAGTGCAGCCGCTACTGAG 60.518 63.158 0.35 0.00 40.25 3.35
2012 4442 3.465403 CGCTACTGAGCCCAGCCT 61.465 66.667 0.00 0.00 46.86 4.58
2016 4446 0.975040 CTACTGAGCCCAGCCTGACT 60.975 60.000 0.00 0.00 44.16 3.41
2018 4448 3.972971 CTGAGCCCAGCCTGACTGC 62.973 68.421 0.00 0.00 45.78 4.40
2046 4495 6.435277 GGGCATCCAGTGTTGATATTGATATT 59.565 38.462 0.00 0.00 0.00 1.28
2119 4589 0.038343 ATGTGTGGGCGATTGTTTGC 60.038 50.000 0.00 0.00 0.00 3.68
2124 4594 1.361993 GGGCGATTGTTTGCACACA 59.638 52.632 0.45 0.45 35.54 3.72
2174 4679 5.821204 AGCATGTAAATTTTATCGTGCCTC 58.179 37.500 20.61 5.41 41.81 4.70
2233 5337 9.917139 GATCGACAATTTTATTTTTGTGTTACG 57.083 29.630 0.00 0.00 36.25 3.18
2283 6040 8.932791 CCATATTAACTCCCATATACAAACGTC 58.067 37.037 0.00 0.00 0.00 4.34
2301 6058 5.573337 ACGTCTAACATTAGTGGTAGGAC 57.427 43.478 10.14 6.64 44.24 3.85
2325 6539 5.011738 CACTCACCTAAAAGAAGTGGTAGGA 59.988 44.000 2.66 0.00 37.21 2.94
2348 6562 8.723365 AGGACACCATATTATTTCCATAGAACA 58.277 33.333 0.00 0.00 0.00 3.18
2349 6563 9.349713 GGACACCATATTATTTCCATAGAACAA 57.650 33.333 0.00 0.00 0.00 2.83
2559 7425 0.793250 GTCCAAGAAGACAAGAGCGC 59.207 55.000 0.00 0.00 36.73 5.92
2560 7426 0.320771 TCCAAGAAGACAAGAGCGCC 60.321 55.000 2.29 0.00 0.00 6.53
2561 7427 0.321122 CCAAGAAGACAAGAGCGCCT 60.321 55.000 2.29 0.00 0.00 5.52
2562 7428 0.795085 CAAGAAGACAAGAGCGCCTG 59.205 55.000 2.29 1.21 0.00 4.85
2563 7429 0.394565 AAGAAGACAAGAGCGCCTGT 59.605 50.000 2.29 5.24 0.00 4.00
2564 7430 1.257743 AGAAGACAAGAGCGCCTGTA 58.742 50.000 2.29 0.00 0.00 2.74
2565 7431 1.618837 AGAAGACAAGAGCGCCTGTAA 59.381 47.619 2.29 0.00 0.00 2.41
2566 7432 1.727335 GAAGACAAGAGCGCCTGTAAC 59.273 52.381 2.29 0.00 0.00 2.50
2567 7433 0.037232 AGACAAGAGCGCCTGTAACC 60.037 55.000 2.29 0.00 0.00 2.85
2606 7494 0.612229 TTTATACCCGACCGTGCCAA 59.388 50.000 0.00 0.00 0.00 4.52
2607 7495 0.612229 TTATACCCGACCGTGCCAAA 59.388 50.000 0.00 0.00 0.00 3.28
2608 7496 0.831966 TATACCCGACCGTGCCAAAT 59.168 50.000 0.00 0.00 0.00 2.32
2631 9000 4.207165 ACAATAATGCAATTAGTCCCGCT 58.793 39.130 0.00 0.00 42.97 5.52
2675 9062 1.593006 GCGAATTGTATGGTCGGTCTG 59.407 52.381 0.00 0.00 35.35 3.51
2687 9079 5.134202 TGGTCGGTCTGCATATATACTTG 57.866 43.478 0.00 0.00 0.00 3.16
2714 9106 1.993370 GTCCGCCACTGATAATATCGC 59.007 52.381 0.00 0.00 0.00 4.58
2838 9484 1.016653 GTGGAGAGACCGCTGCTTTC 61.017 60.000 0.00 0.00 44.93 2.62
2841 9487 0.244994 GAGAGACCGCTGCTTTCTGA 59.755 55.000 4.79 0.00 0.00 3.27
2899 9546 2.034507 GTCATCAACGCGCTAGCTTAAG 60.035 50.000 13.93 0.00 42.32 1.85
2906 9553 3.386543 CGCTAGCTTAAGGGCATGT 57.613 52.632 13.93 0.00 34.17 3.21
2907 9554 2.526304 CGCTAGCTTAAGGGCATGTA 57.474 50.000 13.93 0.00 34.17 2.29
2908 9555 2.408050 CGCTAGCTTAAGGGCATGTAG 58.592 52.381 13.93 0.00 34.17 2.74
2909 9556 2.035961 CGCTAGCTTAAGGGCATGTAGA 59.964 50.000 13.93 0.00 34.17 2.59
2911 9558 4.646572 GCTAGCTTAAGGGCATGTAGAAT 58.353 43.478 7.70 0.00 34.17 2.40
2912 9559 4.453819 GCTAGCTTAAGGGCATGTAGAATG 59.546 45.833 7.70 0.00 34.17 2.67
2913 9560 3.825328 AGCTTAAGGGCATGTAGAATGG 58.175 45.455 4.29 0.00 34.17 3.16
2915 9562 3.954258 GCTTAAGGGCATGTAGAATGGTT 59.046 43.478 4.29 0.00 0.00 3.67
2918 9565 6.569127 TTAAGGGCATGTAGAATGGTTCTA 57.431 37.500 0.00 0.00 41.14 2.10
2919 9566 5.653255 AAGGGCATGTAGAATGGTTCTAT 57.347 39.130 3.05 0.00 43.59 1.98
2921 9568 4.910304 AGGGCATGTAGAATGGTTCTATCT 59.090 41.667 3.05 0.00 43.59 1.98
2922 9569 5.370880 AGGGCATGTAGAATGGTTCTATCTT 59.629 40.000 3.05 0.00 43.59 2.40
2923 9570 6.558775 AGGGCATGTAGAATGGTTCTATCTTA 59.441 38.462 3.05 0.00 43.59 2.10
2924 9571 6.876257 GGGCATGTAGAATGGTTCTATCTTAG 59.124 42.308 3.05 0.00 43.59 2.18
2925 9572 6.370166 GGCATGTAGAATGGTTCTATCTTAGC 59.630 42.308 3.05 4.30 43.59 3.09
2926 9573 6.931281 GCATGTAGAATGGTTCTATCTTAGCA 59.069 38.462 3.05 0.00 43.59 3.49
2927 9574 7.442364 GCATGTAGAATGGTTCTATCTTAGCAA 59.558 37.037 3.05 0.00 43.59 3.91
2928 9575 9.499479 CATGTAGAATGGTTCTATCTTAGCAAT 57.501 33.333 3.05 0.00 43.59 3.56
2929 9576 8.893219 TGTAGAATGGTTCTATCTTAGCAATG 57.107 34.615 3.05 0.00 43.59 2.82
2930 9577 8.486210 TGTAGAATGGTTCTATCTTAGCAATGT 58.514 33.333 3.05 0.00 43.59 2.71
2932 9579 7.568349 AGAATGGTTCTATCTTAGCAATGTCA 58.432 34.615 0.00 0.00 38.49 3.58
2933 9580 8.216423 AGAATGGTTCTATCTTAGCAATGTCAT 58.784 33.333 0.00 0.00 38.49 3.06
2934 9581 7.741027 ATGGTTCTATCTTAGCAATGTCATG 57.259 36.000 0.00 0.00 0.00 3.07
2935 9582 6.653020 TGGTTCTATCTTAGCAATGTCATGT 58.347 36.000 0.00 0.00 0.00 3.21
2936 9583 7.791029 TGGTTCTATCTTAGCAATGTCATGTA 58.209 34.615 0.00 0.00 0.00 2.29
2938 9585 9.109393 GGTTCTATCTTAGCAATGTCATGTAAA 57.891 33.333 0.00 0.00 0.00 2.01
2963 9610 9.844257 AAATAAATGATAAGGTGAAGGAGAGAG 57.156 33.333 0.00 0.00 0.00 3.20
2964 9611 8.789767 ATAAATGATAAGGTGAAGGAGAGAGA 57.210 34.615 0.00 0.00 0.00 3.10
2965 9612 7.502060 AAATGATAAGGTGAAGGAGAGAGAA 57.498 36.000 0.00 0.00 0.00 2.87
2966 9613 7.502060 AATGATAAGGTGAAGGAGAGAGAAA 57.498 36.000 0.00 0.00 0.00 2.52
2968 9615 7.502060 TGATAAGGTGAAGGAGAGAGAAATT 57.498 36.000 0.00 0.00 0.00 1.82
2969 9616 8.609617 TGATAAGGTGAAGGAGAGAGAAATTA 57.390 34.615 0.00 0.00 0.00 1.40
2970 9617 9.218525 TGATAAGGTGAAGGAGAGAGAAATTAT 57.781 33.333 0.00 0.00 0.00 1.28
2974 9621 8.846423 AGGTGAAGGAGAGAGAAATTATAAGA 57.154 34.615 0.00 0.00 0.00 2.10
2975 9622 9.273137 AGGTGAAGGAGAGAGAAATTATAAGAA 57.727 33.333 0.00 0.00 0.00 2.52
2976 9623 9.892130 GGTGAAGGAGAGAGAAATTATAAGAAA 57.108 33.333 0.00 0.00 0.00 2.52
3014 9661 8.498054 TCTTATTTAAGAGAAGGCAAGATGTG 57.502 34.615 0.00 0.00 37.40 3.21
3015 9662 8.321353 TCTTATTTAAGAGAAGGCAAGATGTGA 58.679 33.333 0.00 0.00 37.40 3.58
3016 9663 9.118300 CTTATTTAAGAGAAGGCAAGATGTGAT 57.882 33.333 0.00 0.00 35.33 3.06
3017 9664 6.992063 TTTAAGAGAAGGCAAGATGTGATC 57.008 37.500 0.00 0.00 0.00 2.92
3018 9665 4.840716 AAGAGAAGGCAAGATGTGATCT 57.159 40.909 0.00 0.00 42.61 2.75
3019 9666 4.405116 AGAGAAGGCAAGATGTGATCTC 57.595 45.455 0.00 0.00 39.08 2.75
3020 9667 4.032310 AGAGAAGGCAAGATGTGATCTCT 58.968 43.478 0.00 0.00 39.08 3.10
3021 9668 4.470664 AGAGAAGGCAAGATGTGATCTCTT 59.529 41.667 0.00 0.00 38.85 2.85
3023 9670 5.916318 AGAAGGCAAGATGTGATCTCTTAG 58.084 41.667 0.00 0.00 39.08 2.18
3024 9671 4.070630 AGGCAAGATGTGATCTCTTAGC 57.929 45.455 0.00 2.46 39.08 3.09
3026 9673 3.559242 GGCAAGATGTGATCTCTTAGCAC 59.441 47.826 13.96 0.00 44.98 4.40
3040 9687 9.743057 GATCTCTTAGCACATATATGTATCACC 57.257 37.037 17.86 5.11 39.39 4.02
3041 9688 8.067751 TCTCTTAGCACATATATGTATCACCC 57.932 38.462 17.86 3.54 39.39 4.61
3042 9689 7.124298 TCTCTTAGCACATATATGTATCACCCC 59.876 40.741 17.86 2.00 39.39 4.95
3043 9690 4.471904 AGCACATATATGTATCACCCCG 57.528 45.455 17.86 4.81 39.39 5.73
3044 9691 3.838317 AGCACATATATGTATCACCCCGT 59.162 43.478 17.86 0.00 39.39 5.28
3045 9692 4.286032 AGCACATATATGTATCACCCCGTT 59.714 41.667 17.86 0.00 39.39 4.44
3046 9693 5.001232 GCACATATATGTATCACCCCGTTT 58.999 41.667 17.86 0.00 39.39 3.60
3047 9694 5.472137 GCACATATATGTATCACCCCGTTTT 59.528 40.000 17.86 0.00 39.39 2.43
3048 9695 6.016610 GCACATATATGTATCACCCCGTTTTT 60.017 38.462 17.86 0.00 39.39 1.94
3049 9696 7.173562 GCACATATATGTATCACCCCGTTTTTA 59.826 37.037 17.86 0.00 39.39 1.52
3050 9697 8.717821 CACATATATGTATCACCCCGTTTTTAG 58.282 37.037 17.86 0.00 39.39 1.85
3051 9698 7.881232 ACATATATGTATCACCCCGTTTTTAGG 59.119 37.037 16.85 0.00 39.68 2.69
3052 9699 4.847990 ATGTATCACCCCGTTTTTAGGA 57.152 40.909 0.00 0.00 0.00 2.94
3053 9700 4.637387 TGTATCACCCCGTTTTTAGGAA 57.363 40.909 0.00 0.00 0.00 3.36
3054 9701 5.182169 TGTATCACCCCGTTTTTAGGAAT 57.818 39.130 0.00 0.00 0.00 3.01
3055 9702 6.310764 TGTATCACCCCGTTTTTAGGAATA 57.689 37.500 0.00 0.00 0.00 1.75
3056 9703 6.350906 TGTATCACCCCGTTTTTAGGAATAG 58.649 40.000 0.00 0.00 0.00 1.73
3057 9704 3.613030 TCACCCCGTTTTTAGGAATAGC 58.387 45.455 0.00 0.00 0.00 2.97
3059 9706 4.470664 TCACCCCGTTTTTAGGAATAGCTA 59.529 41.667 0.00 0.00 0.00 3.32
3060 9707 4.814771 CACCCCGTTTTTAGGAATAGCTAG 59.185 45.833 0.00 0.00 0.00 3.42
3061 9708 4.472470 ACCCCGTTTTTAGGAATAGCTAGT 59.528 41.667 0.00 0.00 0.00 2.57
3063 9710 6.156775 ACCCCGTTTTTAGGAATAGCTAGTTA 59.843 38.462 0.00 0.00 0.00 2.24
3064 9711 7.147426 ACCCCGTTTTTAGGAATAGCTAGTTAT 60.147 37.037 0.00 0.00 0.00 1.89
3066 9713 8.557029 CCCGTTTTTAGGAATAGCTAGTTATTG 58.443 37.037 15.66 0.00 0.00 1.90
3067 9714 8.557029 CCGTTTTTAGGAATAGCTAGTTATTGG 58.443 37.037 15.66 4.78 0.00 3.16
3068 9715 9.321562 CGTTTTTAGGAATAGCTAGTTATTGGA 57.678 33.333 15.66 0.00 0.00 3.53
3075 9722 9.041354 AGGAATAGCTAGTTATTGGAGATAAGG 57.959 37.037 15.66 0.00 0.00 2.69
3076 9723 7.766738 GGAATAGCTAGTTATTGGAGATAAGGC 59.233 40.741 15.66 0.00 0.00 4.35
3077 9724 8.442660 AATAGCTAGTTATTGGAGATAAGGCT 57.557 34.615 10.69 0.00 0.00 4.58
3078 9725 9.548631 AATAGCTAGTTATTGGAGATAAGGCTA 57.451 33.333 10.69 0.00 33.11 3.93
3082 9729 8.032451 GCTAGTTATTGGAGATAAGGCTAAGAG 58.968 40.741 0.00 0.00 0.00 2.85
3083 9730 9.303116 CTAGTTATTGGAGATAAGGCTAAGAGA 57.697 37.037 0.00 0.00 0.00 3.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
408 417 1.876416 GCCTATAAATTCCGGCGCTCA 60.876 52.381 7.64 0.00 32.22 4.26
477 488 4.293626 AAACGACTGTGCACGCGC 62.294 61.111 21.34 0.00 39.24 6.86
486 501 2.551270 GCGTGAGGCAAACGACTG 59.449 61.111 14.98 0.00 43.68 3.51
487 502 3.036084 CGCGTGAGGCAAACGACT 61.036 61.111 14.98 0.00 43.68 4.18
488 503 4.719616 GCGCGTGAGGCAAACGAC 62.720 66.667 8.43 6.33 43.68 4.34
489 504 3.561217 TAGCGCGTGAGGCAAACGA 62.561 57.895 8.43 0.00 43.68 3.85
490 505 3.071459 CTAGCGCGTGAGGCAAACG 62.071 63.158 8.43 7.51 43.84 3.60
491 506 1.566018 AACTAGCGCGTGAGGCAAAC 61.566 55.000 8.43 0.00 43.84 2.93
493 508 0.882927 AAAACTAGCGCGTGAGGCAA 60.883 50.000 8.43 0.00 43.84 4.52
495 510 1.420312 GAAAACTAGCGCGTGAGGC 59.580 57.895 8.43 0.00 38.69 4.70
496 511 1.683790 CGGAAAACTAGCGCGTGAGG 61.684 60.000 8.43 0.00 0.00 3.86
497 512 1.702299 CGGAAAACTAGCGCGTGAG 59.298 57.895 8.43 8.00 0.00 3.51
595 635 6.036083 CGGTTAATCATATAAGGGCATCTTCG 59.964 42.308 0.00 0.00 36.93 3.79
597 637 6.879458 GTCGGTTAATCATATAAGGGCATCTT 59.121 38.462 0.00 0.00 39.40 2.40
604 644 6.698329 TGTGTTCGTCGGTTAATCATATAAGG 59.302 38.462 0.00 0.00 0.00 2.69
609 649 4.807443 TGTGTGTTCGTCGGTTAATCATA 58.193 39.130 0.00 0.00 0.00 2.15
613 653 4.512198 TGAATTGTGTGTTCGTCGGTTAAT 59.488 37.500 0.00 0.00 0.00 1.40
647 687 1.143305 CTCGCTAATCTCGGCCATTG 58.857 55.000 2.24 0.00 0.00 2.82
667 2665 2.350484 CGCCACTGATGATTGATGATGC 60.350 50.000 0.00 0.00 0.00 3.91
669 2667 2.158711 ACCGCCACTGATGATTGATGAT 60.159 45.455 0.00 0.00 0.00 2.45
670 2668 1.210234 ACCGCCACTGATGATTGATGA 59.790 47.619 0.00 0.00 0.00 2.92
671 2669 1.332686 CACCGCCACTGATGATTGATG 59.667 52.381 0.00 0.00 0.00 3.07
672 2670 1.671979 CACCGCCACTGATGATTGAT 58.328 50.000 0.00 0.00 0.00 2.57
673 2671 1.026182 GCACCGCCACTGATGATTGA 61.026 55.000 0.00 0.00 0.00 2.57
674 2672 1.430632 GCACCGCCACTGATGATTG 59.569 57.895 0.00 0.00 0.00 2.67
675 2673 3.909662 GCACCGCCACTGATGATT 58.090 55.556 0.00 0.00 0.00 2.57
722 2724 6.579666 ATCAGCAAAGCAAAGATTAAGTGA 57.420 33.333 0.00 0.00 0.00 3.41
787 2792 5.483685 AGCAACACTTAGATTACAGTGGA 57.516 39.130 4.44 0.00 44.12 4.02
807 2812 2.601763 CGGGTGTTCATACGTCTAAAGC 59.398 50.000 0.00 0.00 0.00 3.51
841 2890 1.750018 CCGCACATGGGCAGAATCA 60.750 57.895 22.05 0.00 0.00 2.57
858 2907 2.288729 GGTCGTTACAATTATTCGGGCC 59.711 50.000 0.00 0.00 0.00 5.80
956 3021 0.719465 GTTTCATAGTGGTGCCGACG 59.281 55.000 0.00 0.00 0.00 5.12
958 3023 0.390603 CGGTTTCATAGTGGTGCCGA 60.391 55.000 0.00 0.00 40.04 5.54
971 3041 0.669318 TGTGGAGATGTCGCGGTTTC 60.669 55.000 6.13 0.04 0.00 2.78
988 3058 0.250510 TGGTGTGTGTGTGTGTGTGT 60.251 50.000 0.00 0.00 0.00 3.72
989 3059 0.167908 GTGGTGTGTGTGTGTGTGTG 59.832 55.000 0.00 0.00 0.00 3.82
990 3060 0.250510 TGTGGTGTGTGTGTGTGTGT 60.251 50.000 0.00 0.00 0.00 3.72
991 3061 0.877743 TTGTGGTGTGTGTGTGTGTG 59.122 50.000 0.00 0.00 0.00 3.82
992 3062 1.164411 CTTGTGGTGTGTGTGTGTGT 58.836 50.000 0.00 0.00 0.00 3.72
993 3063 0.451383 CCTTGTGGTGTGTGTGTGTG 59.549 55.000 0.00 0.00 0.00 3.82
1052 3134 1.326213 GGCTGGCTGCTCTAGACTGA 61.326 60.000 16.14 0.00 42.39 3.41
1063 3152 4.753662 ATGGTGGCTGGCTGGCTG 62.754 66.667 18.27 2.91 42.34 4.85
1064 3153 4.753662 CATGGTGGCTGGCTGGCT 62.754 66.667 18.27 0.00 42.34 4.75
1204 3297 1.841302 GCATCACCACCTCCTGTCCA 61.841 60.000 0.00 0.00 0.00 4.02
1207 3300 0.837691 TGAGCATCACCACCTCCTGT 60.838 55.000 0.00 0.00 42.56 4.00
1231 3324 2.822255 GCGCCGGATTGCTGGTTA 60.822 61.111 5.05 0.00 42.93 2.85
1337 3430 1.131883 TCGACTTACGTAGAAGCAGGC 59.868 52.381 0.00 0.00 43.13 4.85
1427 3819 7.068103 TCACCAGAAGAAAGCTGAAATTAACAA 59.932 33.333 0.00 0.00 35.39 2.83
1436 3860 1.686587 TCGTCACCAGAAGAAAGCTGA 59.313 47.619 0.00 0.00 35.39 4.26
1448 3872 4.337060 CGCCACTCGTCGTCACCA 62.337 66.667 0.00 0.00 0.00 4.17
1616 4046 0.326927 GGATGTTCTCCGGGTTCCAA 59.673 55.000 0.00 0.00 33.29 3.53
1682 4112 3.034086 CTAGGGTAGGGGAGGCCA 58.966 66.667 5.01 0.00 0.00 5.36
1940 4370 1.466856 ACCCATCGTCGCAGTAGTTA 58.533 50.000 0.00 0.00 0.00 2.24
2018 4448 2.556840 ATCAACACTGGATGCCCGGG 62.557 60.000 19.09 19.09 43.34 5.73
2052 4501 7.285172 TCACAAATTCACAAAGAGATTCCAAGA 59.715 33.333 0.00 0.00 0.00 3.02
2053 4502 7.428020 TCACAAATTCACAAAGAGATTCCAAG 58.572 34.615 0.00 0.00 0.00 3.61
2055 4504 6.957920 TCACAAATTCACAAAGAGATTCCA 57.042 33.333 0.00 0.00 0.00 3.53
2134 4605 8.647143 TTACATGCTTCTTTCTTTTGGAAAAG 57.353 30.769 5.63 5.63 45.17 2.27
2213 5317 8.066668 TGCTCCGTAACACAAAAATAAAATTG 57.933 30.769 0.00 0.00 0.00 2.32
2256 5935 8.434392 ACGTTTGTATATGGGAGTTAATATGGT 58.566 33.333 0.00 0.00 0.00 3.55
2283 6040 6.331061 GTGAGTGTCCTACCACTAATGTTAG 58.669 44.000 0.00 0.00 45.46 2.34
2301 6058 5.011738 TCCTACCACTTCTTTTAGGTGAGTG 59.988 44.000 0.00 0.00 35.62 3.51
2304 6061 4.903049 TGTCCTACCACTTCTTTTAGGTGA 59.097 41.667 0.00 0.00 35.62 4.02
2306 6063 5.224821 GTGTCCTACCACTTCTTTTAGGT 57.775 43.478 0.00 0.00 38.14 3.08
2337 6551 6.449635 AAGCGCATAAATTGTTCTATGGAA 57.550 33.333 11.47 0.00 0.00 3.53
2338 6552 6.449635 AAAGCGCATAAATTGTTCTATGGA 57.550 33.333 11.47 0.00 0.00 3.41
2348 6562 7.455447 GCTTGTGAATAAAAAGCGCATAAATT 58.545 30.769 11.47 2.13 37.21 1.82
2349 6563 6.992766 GCTTGTGAATAAAAAGCGCATAAAT 58.007 32.000 11.47 0.00 37.21 1.40
2559 7425 2.172505 TGCATGATACAGGGGTTACAGG 59.827 50.000 0.00 0.00 0.00 4.00
2560 7426 3.558931 TGCATGATACAGGGGTTACAG 57.441 47.619 0.00 0.00 0.00 2.74
2561 7427 3.819368 CATGCATGATACAGGGGTTACA 58.181 45.455 22.59 0.00 0.00 2.41
2562 7428 2.554032 GCATGCATGATACAGGGGTTAC 59.446 50.000 30.64 3.61 0.00 2.50
2563 7429 2.174424 TGCATGCATGATACAGGGGTTA 59.826 45.455 30.64 0.00 0.00 2.85
2564 7430 1.063792 TGCATGCATGATACAGGGGTT 60.064 47.619 30.64 0.00 0.00 4.11
2565 7431 0.552363 TGCATGCATGATACAGGGGT 59.448 50.000 30.64 0.00 0.00 4.95
2566 7432 1.816835 GATGCATGCATGATACAGGGG 59.183 52.381 36.73 0.20 36.70 4.79
2567 7433 2.791655 AGATGCATGCATGATACAGGG 58.208 47.619 36.73 1.01 36.70 4.45
2606 7494 6.490040 AGCGGGACTAATTGCATTATTGTATT 59.510 34.615 0.00 0.00 0.00 1.89
2607 7495 6.003950 AGCGGGACTAATTGCATTATTGTAT 58.996 36.000 0.00 0.00 0.00 2.29
2608 7496 5.238432 CAGCGGGACTAATTGCATTATTGTA 59.762 40.000 0.00 0.00 0.00 2.41
2675 9062 4.150627 CGGACAGCACACAAGTATATATGC 59.849 45.833 0.00 0.00 0.00 3.14
2714 9106 5.418310 AGTTCGTTATCAACAACACCAAG 57.582 39.130 0.00 0.00 0.00 3.61
2838 9484 0.390866 AGCACGTGAAGATGCCTCAG 60.391 55.000 22.23 0.00 43.12 3.35
2841 9487 2.350522 CTAAAGCACGTGAAGATGCCT 58.649 47.619 22.23 1.10 43.12 4.75
2899 9546 5.234466 AGATAGAACCATTCTACATGCCC 57.766 43.478 0.46 0.00 44.43 5.36
2902 9549 8.893219 TTGCTAAGATAGAACCATTCTACATG 57.107 34.615 0.46 0.00 44.43 3.21
2904 9551 8.486210 ACATTGCTAAGATAGAACCATTCTACA 58.514 33.333 0.46 0.00 44.43 2.74
2905 9552 8.894768 ACATTGCTAAGATAGAACCATTCTAC 57.105 34.615 0.46 0.00 44.43 2.59
2906 9553 8.704668 TGACATTGCTAAGATAGAACCATTCTA 58.295 33.333 0.95 0.95 45.58 2.10
2907 9554 7.568349 TGACATTGCTAAGATAGAACCATTCT 58.432 34.615 0.00 0.00 43.72 2.40
2908 9555 7.792374 TGACATTGCTAAGATAGAACCATTC 57.208 36.000 0.00 0.00 0.00 2.67
2909 9556 7.776969 ACATGACATTGCTAAGATAGAACCATT 59.223 33.333 0.00 0.00 0.00 3.16
2911 9558 6.653020 ACATGACATTGCTAAGATAGAACCA 58.347 36.000 0.00 0.00 0.00 3.67
2912 9559 8.662781 TTACATGACATTGCTAAGATAGAACC 57.337 34.615 0.00 0.00 0.00 3.62
2938 9585 9.218525 TCTCTCTCCTTCACCTTATCATTTATT 57.781 33.333 0.00 0.00 0.00 1.40
2939 9586 8.789767 TCTCTCTCCTTCACCTTATCATTTAT 57.210 34.615 0.00 0.00 0.00 1.40
2940 9587 8.609617 TTCTCTCTCCTTCACCTTATCATTTA 57.390 34.615 0.00 0.00 0.00 1.40
2941 9588 7.502060 TTCTCTCTCCTTCACCTTATCATTT 57.498 36.000 0.00 0.00 0.00 2.32
2942 9589 7.502060 TTTCTCTCTCCTTCACCTTATCATT 57.498 36.000 0.00 0.00 0.00 2.57
2943 9590 7.688918 ATTTCTCTCTCCTTCACCTTATCAT 57.311 36.000 0.00 0.00 0.00 2.45
2944 9591 7.502060 AATTTCTCTCTCCTTCACCTTATCA 57.498 36.000 0.00 0.00 0.00 2.15
2948 9595 9.273137 TCTTATAATTTCTCTCTCCTTCACCTT 57.727 33.333 0.00 0.00 0.00 3.50
2950 9597 9.892130 TTTCTTATAATTTCTCTCTCCTTCACC 57.108 33.333 0.00 0.00 0.00 4.02
2989 9636 8.321353 TCACATCTTGCCTTCTCTTAAATAAGA 58.679 33.333 3.08 3.08 39.82 2.10
2991 9638 9.113838 GATCACATCTTGCCTTCTCTTAAATAA 57.886 33.333 0.00 0.00 0.00 1.40
2992 9639 8.489489 AGATCACATCTTGCCTTCTCTTAAATA 58.511 33.333 0.00 0.00 35.76 1.40
2993 9640 7.344913 AGATCACATCTTGCCTTCTCTTAAAT 58.655 34.615 0.00 0.00 35.76 1.40
2994 9641 6.715280 AGATCACATCTTGCCTTCTCTTAAA 58.285 36.000 0.00 0.00 35.76 1.52
2995 9642 6.155910 AGAGATCACATCTTGCCTTCTCTTAA 59.844 38.462 0.00 0.00 40.38 1.85
2996 9643 5.660417 AGAGATCACATCTTGCCTTCTCTTA 59.340 40.000 0.00 0.00 40.38 2.10
2997 9644 4.470664 AGAGATCACATCTTGCCTTCTCTT 59.529 41.667 0.00 0.00 40.38 2.85
2998 9645 4.032310 AGAGATCACATCTTGCCTTCTCT 58.968 43.478 0.00 0.00 40.38 3.10
3002 9649 4.080695 TGCTAAGAGATCACATCTTGCCTT 60.081 41.667 6.07 0.00 40.38 4.35
3003 9650 3.453717 TGCTAAGAGATCACATCTTGCCT 59.546 43.478 6.07 0.00 40.38 4.75
3005 9652 4.186926 TGTGCTAAGAGATCACATCTTGC 58.813 43.478 6.07 7.78 40.38 4.01
3006 9653 9.872721 ATATATGTGCTAAGAGATCACATCTTG 57.127 33.333 9.93 0.00 45.20 3.02
3008 9655 9.033711 ACATATATGTGCTAAGAGATCACATCT 57.966 33.333 17.60 4.49 45.20 2.90
3014 9661 9.743057 GGTGATACATATATGTGCTAAGAGATC 57.257 37.037 25.48 17.61 41.89 2.75
3015 9662 8.700051 GGGTGATACATATATGTGCTAAGAGAT 58.300 37.037 25.48 10.32 41.89 2.75
3016 9663 7.124298 GGGGTGATACATATATGTGCTAAGAGA 59.876 40.741 25.48 5.95 41.89 3.10
3017 9664 7.268586 GGGGTGATACATATATGTGCTAAGAG 58.731 42.308 25.48 0.00 41.89 2.85
3018 9665 6.127451 CGGGGTGATACATATATGTGCTAAGA 60.127 42.308 25.48 7.35 41.89 2.10
3019 9666 6.042777 CGGGGTGATACATATATGTGCTAAG 58.957 44.000 25.48 7.91 41.89 2.18
3020 9667 5.482526 ACGGGGTGATACATATATGTGCTAA 59.517 40.000 25.48 8.41 41.89 3.09
3021 9668 5.020795 ACGGGGTGATACATATATGTGCTA 58.979 41.667 25.48 8.76 41.89 3.49
3023 9670 4.202245 ACGGGGTGATACATATATGTGC 57.798 45.455 25.48 17.80 41.89 4.57
3024 9671 7.504924 AAAAACGGGGTGATACATATATGTG 57.495 36.000 25.48 10.55 41.89 3.21
3026 9673 8.098286 TCCTAAAAACGGGGTGATACATATATG 58.902 37.037 11.29 11.29 0.00 1.78
3027 9674 8.209802 TCCTAAAAACGGGGTGATACATATAT 57.790 34.615 0.00 0.00 0.00 0.86
3029 9676 6.503560 TCCTAAAAACGGGGTGATACATAT 57.496 37.500 0.00 0.00 0.00 1.78
3030 9677 5.954153 TCCTAAAAACGGGGTGATACATA 57.046 39.130 0.00 0.00 0.00 2.29
3031 9678 4.847990 TCCTAAAAACGGGGTGATACAT 57.152 40.909 0.00 0.00 0.00 2.29
3032 9679 4.637387 TTCCTAAAAACGGGGTGATACA 57.363 40.909 0.00 0.00 0.00 2.29
3033 9680 5.237996 GCTATTCCTAAAAACGGGGTGATAC 59.762 44.000 0.00 0.00 0.00 2.24
3034 9681 5.131475 AGCTATTCCTAAAAACGGGGTGATA 59.869 40.000 0.00 0.00 0.00 2.15
3035 9682 4.079958 AGCTATTCCTAAAAACGGGGTGAT 60.080 41.667 0.00 0.00 0.00 3.06
3038 9685 4.472470 ACTAGCTATTCCTAAAAACGGGGT 59.528 41.667 0.00 0.00 0.00 4.95
3040 9687 8.557029 CAATAACTAGCTATTCCTAAAAACGGG 58.443 37.037 0.00 0.00 0.00 5.28
3041 9688 8.557029 CCAATAACTAGCTATTCCTAAAAACGG 58.443 37.037 0.00 0.00 0.00 4.44
3042 9689 9.321562 TCCAATAACTAGCTATTCCTAAAAACG 57.678 33.333 0.00 0.00 0.00 3.60
3049 9696 9.041354 CCTTATCTCCAATAACTAGCTATTCCT 57.959 37.037 0.00 0.00 0.00 3.36
3050 9697 7.766738 GCCTTATCTCCAATAACTAGCTATTCC 59.233 40.741 0.00 0.00 0.00 3.01
3051 9698 8.536175 AGCCTTATCTCCAATAACTAGCTATTC 58.464 37.037 0.00 0.00 0.00 1.75
3052 9699 8.442660 AGCCTTATCTCCAATAACTAGCTATT 57.557 34.615 0.00 0.00 0.00 1.73
3053 9700 9.548631 TTAGCCTTATCTCCAATAACTAGCTAT 57.451 33.333 0.00 0.00 0.00 2.97
3054 9701 8.951614 TTAGCCTTATCTCCAATAACTAGCTA 57.048 34.615 0.00 0.00 0.00 3.32
3055 9702 7.730784 TCTTAGCCTTATCTCCAATAACTAGCT 59.269 37.037 0.00 0.00 0.00 3.32
3056 9703 7.897864 TCTTAGCCTTATCTCCAATAACTAGC 58.102 38.462 0.00 0.00 0.00 3.42
3057 9704 9.303116 TCTCTTAGCCTTATCTCCAATAACTAG 57.697 37.037 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.