Multiple sequence alignment - TraesCS3A01G092100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G092100 chr3A 100.000 5632 0 0 1 5632 57903446 57897815 0.000000e+00 10401.0
1 TraesCS3A01G092100 chr3A 90.977 133 7 4 3701 3828 111763028 111763160 2.090000e-39 174.0
2 TraesCS3A01G092100 chr3A 89.855 138 8 5 3691 3822 712147455 712147592 7.500000e-39 172.0
3 TraesCS3A01G092100 chr3D 94.194 1619 54 17 4044 5632 46480073 46478465 0.000000e+00 2433.0
4 TraesCS3A01G092100 chr3D 95.067 892 40 4 2815 3704 46481348 46480459 0.000000e+00 1400.0
5 TraesCS3A01G092100 chr3D 93.509 909 49 8 1825 2733 46483529 46482631 0.000000e+00 1343.0
6 TraesCS3A01G092100 chr3D 87.463 1021 60 30 1107 2088 46484533 46483542 0.000000e+00 1114.0
7 TraesCS3A01G092100 chr3D 96.364 220 8 0 3818 4037 46480465 46480246 4.150000e-96 363.0
8 TraesCS3A01G092100 chr3D 87.192 203 24 2 4044 4246 37519416 37519616 4.390000e-56 230.0
9 TraesCS3A01G092100 chr3D 97.917 48 1 0 1075 1122 46484582 46484535 3.620000e-12 84.2
10 TraesCS3A01G092100 chr3D 100.000 43 0 0 2773 2815 46482365 46482323 4.680000e-11 80.5
11 TraesCS3A01G092100 chr3B 93.048 1611 68 22 4044 5632 72710127 72708539 0.000000e+00 2314.0
12 TraesCS3A01G092100 chr3B 97.433 896 22 1 171 1066 51873902 51874796 0.000000e+00 1526.0
13 TraesCS3A01G092100 chr3B 97.321 896 22 1 171 1066 345410228 345409335 0.000000e+00 1520.0
14 TraesCS3A01G092100 chr3B 96.987 896 26 1 171 1066 43828806 43827912 0.000000e+00 1504.0
15 TraesCS3A01G092100 chr3B 92.050 956 51 10 1578 2528 72713736 72712801 0.000000e+00 1321.0
16 TraesCS3A01G092100 chr3B 93.393 893 48 10 2815 3704 72711348 72710464 0.000000e+00 1312.0
17 TraesCS3A01G092100 chr3B 92.075 429 22 4 1107 1526 72714165 72713740 1.350000e-165 593.0
18 TraesCS3A01G092100 chr3B 95.516 223 10 0 3818 4040 72710470 72710248 1.930000e-94 357.0
19 TraesCS3A01G092100 chr3B 98.235 170 3 0 3 172 345412659 345412490 1.190000e-76 298.0
20 TraesCS3A01G092100 chr3B 97.647 170 4 0 3 172 29998213 29998382 5.520000e-75 292.0
21 TraesCS3A01G092100 chr3B 95.425 153 3 2 2661 2813 72712432 72712284 2.030000e-59 241.0
22 TraesCS3A01G092100 chr3B 90.441 136 8 3 3699 3829 823500080 823500215 2.090000e-39 174.0
23 TraesCS3A01G092100 chr3B 88.732 142 11 3 3699 3835 823560853 823560712 9.700000e-38 169.0
24 TraesCS3A01G092100 chr3B 100.000 46 0 0 1077 1122 72714212 72714167 1.010000e-12 86.1
25 TraesCS3A01G092100 chr7B 97.656 896 20 1 171 1066 245598840 245599734 0.000000e+00 1537.0
26 TraesCS3A01G092100 chr7B 98.235 170 3 0 3 172 245596459 245596628 1.190000e-76 298.0
27 TraesCS3A01G092100 chr2A 97.315 894 23 1 171 1064 191938470 191939362 0.000000e+00 1517.0
28 TraesCS3A01G092100 chr2A 96.778 900 27 2 169 1068 753524185 753523288 0.000000e+00 1500.0
29 TraesCS3A01G092100 chr1B 97.210 896 23 1 171 1066 683130688 683129795 0.000000e+00 1515.0
30 TraesCS3A01G092100 chr1B 97.647 170 4 0 3 172 683132851 683132682 5.520000e-75 292.0
31 TraesCS3A01G092100 chr2B 97.098 896 25 1 171 1066 769258982 769258088 0.000000e+00 1509.0
32 TraesCS3A01G092100 chr2B 98.235 170 3 0 3 172 52421996 52422165 1.190000e-76 298.0
33 TraesCS3A01G092100 chr2B 90.977 133 7 4 3696 3823 597592 597460 2.090000e-39 174.0
34 TraesCS3A01G092100 chr2B 87.417 151 13 5 3698 3842 547431898 547432048 9.700000e-38 169.0
35 TraesCS3A01G092100 chr1A 96.987 896 26 1 171 1066 4265484 4266378 0.000000e+00 1504.0
36 TraesCS3A01G092100 chr1A 97.647 170 4 0 3 172 4262723 4262892 5.520000e-75 292.0
37 TraesCS3A01G092100 chr1A 86.700 203 26 1 4044 4246 185511595 185511796 2.040000e-54 224.0
38 TraesCS3A01G092100 chr1A 97.436 39 1 0 2815 2853 188135467 188135429 3.640000e-07 67.6
39 TraesCS3A01G092100 chr5B 97.647 170 4 0 3 172 386661999 386661830 5.520000e-75 292.0
40 TraesCS3A01G092100 chr5B 91.603 131 6 4 3701 3826 61540874 61541004 5.800000e-40 176.0
41 TraesCS3A01G092100 chr5A 97.647 170 4 0 3 172 43260168 43260337 5.520000e-75 292.0
42 TraesCS3A01G092100 chr5A 87.192 203 25 1 4044 4246 548965018 548965219 4.390000e-56 230.0
43 TraesCS3A01G092100 chr4A 97.647 170 4 0 3 172 473499537 473499706 5.520000e-75 292.0
44 TraesCS3A01G092100 chr7A 87.685 203 24 1 4044 4246 18354617 18354818 9.430000e-58 235.0
45 TraesCS3A01G092100 chr7A 87.192 203 25 1 4044 4246 116043361 116043562 4.390000e-56 230.0
46 TraesCS3A01G092100 chr6A 87.255 204 25 1 4044 4247 162804050 162803848 1.220000e-56 231.0
47 TraesCS3A01G092100 chr6A 91.935 124 8 2 3701 3824 617146996 617147117 7.500000e-39 172.0
48 TraesCS3A01G092100 chr6A 97.436 39 1 0 2815 2853 346585814 346585852 3.640000e-07 67.6
49 TraesCS3A01G092100 chr6B 87.192 203 24 2 4044 4246 505562889 505562689 4.390000e-56 230.0
50 TraesCS3A01G092100 chr5D 91.603 131 6 4 3697 3822 184943640 184943770 5.800000e-40 176.0
51 TraesCS3A01G092100 chr5D 97.436 39 1 0 2815 2853 285263355 285263393 3.640000e-07 67.6
52 TraesCS3A01G092100 chr5D 97.436 39 1 0 2815 2853 308860054 308860092 3.640000e-07 67.6
53 TraesCS3A01G092100 chr6D 97.436 39 1 0 2815 2853 249986833 249986795 3.640000e-07 67.6
54 TraesCS3A01G092100 chr4D 97.436 39 1 0 2815 2853 303078175 303078213 3.640000e-07 67.6
55 TraesCS3A01G092100 chr4B 97.436 39 1 0 2815 2853 96646280 96646242 3.640000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G092100 chr3A 57897815 57903446 5631 True 10401.000000 10401 100.000000 1 5632 1 chr3A.!!$R1 5631
1 TraesCS3A01G092100 chr3D 46478465 46484582 6117 True 973.957143 2433 94.930571 1075 5632 7 chr3D.!!$R1 4557
2 TraesCS3A01G092100 chr3B 51873902 51874796 894 False 1526.000000 1526 97.433000 171 1066 1 chr3B.!!$F2 895
3 TraesCS3A01G092100 chr3B 43827912 43828806 894 True 1504.000000 1504 96.987000 171 1066 1 chr3B.!!$R1 895
4 TraesCS3A01G092100 chr3B 345409335 345412659 3324 True 909.000000 1520 97.778000 3 1066 2 chr3B.!!$R4 1063
5 TraesCS3A01G092100 chr3B 72708539 72714212 5673 True 889.157143 2314 94.501000 1077 5632 7 chr3B.!!$R3 4555
6 TraesCS3A01G092100 chr7B 245596459 245599734 3275 False 917.500000 1537 97.945500 3 1066 2 chr7B.!!$F1 1063
7 TraesCS3A01G092100 chr2A 191938470 191939362 892 False 1517.000000 1517 97.315000 171 1064 1 chr2A.!!$F1 893
8 TraesCS3A01G092100 chr2A 753523288 753524185 897 True 1500.000000 1500 96.778000 169 1068 1 chr2A.!!$R1 899
9 TraesCS3A01G092100 chr1B 683129795 683132851 3056 True 903.500000 1515 97.428500 3 1066 2 chr1B.!!$R1 1063
10 TraesCS3A01G092100 chr2B 769258088 769258982 894 True 1509.000000 1509 97.098000 171 1066 1 chr2B.!!$R2 895
11 TraesCS3A01G092100 chr1A 4262723 4266378 3655 False 898.000000 1504 97.317000 3 1066 2 chr1A.!!$F2 1063

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
94 95 0.179000 ATAAGGTTCTGCTGAGGGCG 59.821 55.000 0.00 0.00 45.43 6.13 F
1330 4263 0.250338 ACCCGTGAGTTCCTTGCTTC 60.250 55.000 0.00 0.00 0.00 3.86 F
1570 4516 0.095245 CAGTATTTGTCAGTGCGCCG 59.905 55.000 4.18 0.00 0.00 6.46 F
1572 4518 0.179225 GTATTTGTCAGTGCGCCGTG 60.179 55.000 4.18 1.52 0.00 4.94 F
2588 5871 0.463474 GGAGGAGGTGAGCTTCATGC 60.463 60.000 0.00 0.00 43.29 4.06 F
2751 6270 0.608035 TGCACAATCGAAGAACCCCC 60.608 55.000 0.00 0.00 43.58 5.40 F
3715 8451 1.075050 TCAAGTACTCCCTCCGTCTGT 59.925 52.381 0.00 0.00 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1568 4514 0.036010 AGCTTGAAGGATGTCCACGG 60.036 55.000 1.30 0.0 38.89 4.94 R
3131 7865 1.002142 GCCGTTGGTGGTTGAGTAAAC 60.002 52.381 0.00 0.0 38.12 2.01 R
3400 8134 2.303022 TCTGGGGCAATATACTAGCTGC 59.697 50.000 0.00 0.0 0.00 5.25 R
3450 8185 3.930634 AGGCTTTGCAGTTCTTCATTC 57.069 42.857 0.00 0.0 0.00 2.67 R
3804 8540 0.038744 AGTACTCCCTCCGTCCGAAA 59.961 55.000 0.00 0.0 0.00 3.46 R
3807 8543 0.179936 ACTAGTACTCCCTCCGTCCG 59.820 60.000 0.00 0.0 0.00 4.79 R
5461 10401 0.108945 GGCAATGAGGTTTCAGCTGC 60.109 55.000 9.47 0.0 41.74 5.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
94 95 0.179000 ATAAGGTTCTGCTGAGGGCG 59.821 55.000 0.00 0.00 45.43 6.13
97 98 2.669569 GTTCTGCTGAGGGCGCAA 60.670 61.111 10.83 0.00 45.43 4.85
117 118 4.502962 CAACTCAACAAGCCCAAAGAAAA 58.497 39.130 0.00 0.00 0.00 2.29
200 3112 0.544357 AGGGTGAGTGATCCGGTCAA 60.544 55.000 0.00 0.00 38.90 3.18
406 3318 6.260936 CCATGATCTTAGGCTTAATCACGTTT 59.739 38.462 0.00 0.00 0.00 3.60
470 3382 0.962489 CGCCGAGGAGGAGTTCATAT 59.038 55.000 0.00 0.00 45.00 1.78
498 3410 1.492993 GCCTCCCAGACCTCCTGTTT 61.493 60.000 0.00 0.00 41.33 2.83
855 3767 3.371063 GGACAGCCACTCGTCCGA 61.371 66.667 0.00 0.00 42.19 4.55
988 3900 3.481903 CGAGCACGCTTCGCACAT 61.482 61.111 0.00 0.00 0.00 3.21
989 3901 2.097160 GAGCACGCTTCGCACATG 59.903 61.111 0.00 0.00 0.00 3.21
1007 3919 0.823460 TGAGTGCCATGCGTCTATGA 59.177 50.000 0.00 0.00 0.00 2.15
1176 4106 3.787001 GCCGAGACCAAGGGAGGG 61.787 72.222 0.00 0.00 0.00 4.30
1330 4263 0.250338 ACCCGTGAGTTCCTTGCTTC 60.250 55.000 0.00 0.00 0.00 3.86
1375 4321 3.444805 GCGCTGACTCGACTCCCT 61.445 66.667 0.00 0.00 0.00 4.20
1526 4472 1.501582 AGCTTCCAGGTAGCCTAAGG 58.498 55.000 14.28 0.00 39.47 2.69
1527 4473 0.470341 GCTTCCAGGTAGCCTAAGGG 59.530 60.000 6.82 0.00 32.45 3.95
1528 4474 1.132500 CTTCCAGGTAGCCTAAGGGG 58.868 60.000 0.00 0.00 38.36 4.79
1529 4475 0.420272 TTCCAGGTAGCCTAAGGGGT 59.580 55.000 0.00 0.00 46.15 4.95
1530 4476 0.420272 TCCAGGTAGCCTAAGGGGTT 59.580 55.000 0.00 0.00 43.77 4.11
1531 4477 1.652843 TCCAGGTAGCCTAAGGGGTTA 59.347 52.381 0.00 0.00 43.77 2.85
1532 4478 2.047830 CCAGGTAGCCTAAGGGGTTAG 58.952 57.143 0.00 0.00 43.77 2.34
1533 4479 2.047830 CAGGTAGCCTAAGGGGTTAGG 58.952 57.143 6.81 6.81 45.36 2.69
1534 4480 1.942407 AGGTAGCCTAAGGGGTTAGGA 59.058 52.381 14.22 0.00 45.41 2.94
1535 4481 2.527495 AGGTAGCCTAAGGGGTTAGGAT 59.473 50.000 14.22 10.68 45.41 3.24
1536 4482 2.905085 GGTAGCCTAAGGGGTTAGGATC 59.095 54.545 14.22 3.71 45.41 3.36
1537 4483 1.718280 AGCCTAAGGGGTTAGGATCG 58.282 55.000 14.22 0.00 45.41 3.69
1538 4484 1.062352 AGCCTAAGGGGTTAGGATCGT 60.062 52.381 14.22 0.00 45.41 3.73
1539 4485 1.070289 GCCTAAGGGGTTAGGATCGTG 59.930 57.143 14.22 0.00 45.41 4.35
1540 4486 2.395619 CCTAAGGGGTTAGGATCGTGT 58.604 52.381 5.40 0.00 45.41 4.49
1541 4487 2.102588 CCTAAGGGGTTAGGATCGTGTG 59.897 54.545 5.40 0.00 45.41 3.82
1542 4488 0.252197 AAGGGGTTAGGATCGTGTGC 59.748 55.000 0.00 0.00 0.00 4.57
1543 4489 0.617820 AGGGGTTAGGATCGTGTGCT 60.618 55.000 0.00 0.00 0.00 4.40
1544 4490 1.117150 GGGGTTAGGATCGTGTGCTA 58.883 55.000 0.00 0.00 0.00 3.49
1545 4491 1.202498 GGGGTTAGGATCGTGTGCTAC 60.202 57.143 0.00 0.00 29.64 3.58
1553 4499 2.273370 ATCGTGTGCTACGGTTACAG 57.727 50.000 12.78 0.00 45.58 2.74
1554 4500 1.542915 ATCGTGTGCTACGGTTACAGT 59.457 47.619 12.78 0.00 45.58 3.55
1555 4501 2.749076 ATCGTGTGCTACGGTTACAGTA 59.251 45.455 12.78 0.00 45.58 2.74
1556 4502 3.379372 ATCGTGTGCTACGGTTACAGTAT 59.621 43.478 12.78 0.00 45.58 2.12
1557 4503 4.142315 ATCGTGTGCTACGGTTACAGTATT 60.142 41.667 12.78 0.00 45.58 1.89
1558 4504 5.622914 ATCGTGTGCTACGGTTACAGTATTT 60.623 40.000 12.78 0.00 45.58 1.40
1559 4505 5.199424 GTGTGCTACGGTTACAGTATTTG 57.801 43.478 0.00 0.00 0.00 2.32
1560 4506 4.687483 GTGTGCTACGGTTACAGTATTTGT 59.313 41.667 0.00 0.00 43.96 2.83
1561 4507 4.925054 TGTGCTACGGTTACAGTATTTGTC 59.075 41.667 0.00 0.00 41.29 3.18
1562 4508 4.925054 GTGCTACGGTTACAGTATTTGTCA 59.075 41.667 0.00 0.00 41.29 3.58
1563 4509 5.061808 GTGCTACGGTTACAGTATTTGTCAG 59.938 44.000 0.00 0.00 41.29 3.51
1564 4510 5.166398 GCTACGGTTACAGTATTTGTCAGT 58.834 41.667 0.00 0.00 41.29 3.41
1565 4511 5.061808 GCTACGGTTACAGTATTTGTCAGTG 59.938 44.000 0.00 0.00 41.29 3.66
1566 4512 3.744426 ACGGTTACAGTATTTGTCAGTGC 59.256 43.478 0.00 0.00 41.29 4.40
1567 4513 3.181534 CGGTTACAGTATTTGTCAGTGCG 60.182 47.826 0.00 0.00 41.29 5.34
1568 4514 3.424433 GGTTACAGTATTTGTCAGTGCGC 60.424 47.826 0.00 0.00 41.29 6.09
1569 4515 1.156736 ACAGTATTTGTCAGTGCGCC 58.843 50.000 4.18 0.00 33.87 6.53
1570 4516 0.095245 CAGTATTTGTCAGTGCGCCG 59.905 55.000 4.18 0.00 0.00 6.46
1571 4517 0.320421 AGTATTTGTCAGTGCGCCGT 60.320 50.000 4.18 0.00 0.00 5.68
1572 4518 0.179225 GTATTTGTCAGTGCGCCGTG 60.179 55.000 4.18 1.52 0.00 4.94
1573 4519 1.295357 TATTTGTCAGTGCGCCGTGG 61.295 55.000 4.18 0.00 0.00 4.94
1574 4520 3.632736 TATTTGTCAGTGCGCCGTGGA 62.633 52.381 4.18 0.00 0.00 4.02
1575 4521 4.961511 TGTCAGTGCGCCGTGGAC 62.962 66.667 4.18 8.30 39.61 4.02
1576 4522 4.961511 GTCAGTGCGCCGTGGACA 62.962 66.667 4.18 0.00 42.22 4.02
1630 4631 7.976135 AAAACATATCTCAGATAGCCATGTC 57.024 36.000 0.00 0.00 31.75 3.06
1753 4757 4.016444 TCATGCTTTATCCCACAAAGGTC 58.984 43.478 0.00 0.00 34.28 3.85
1756 4760 1.396996 CTTTATCCCACAAAGGTCGCG 59.603 52.381 0.00 0.00 34.66 5.87
1783 4788 4.549458 CACAAGGTAATTTCTTGCCACAG 58.451 43.478 16.34 3.99 43.79 3.66
1901 5183 5.477984 TGTTCTTTTTCCTGAGCATGCTTAT 59.522 36.000 23.61 0.00 0.00 1.73
1915 5197 6.955364 AGCATGCTTATGTATGATCTGGTAT 58.045 36.000 16.30 0.00 38.33 2.73
1916 5198 7.400439 AGCATGCTTATGTATGATCTGGTATT 58.600 34.615 16.30 0.00 38.33 1.89
1918 5200 9.166173 GCATGCTTATGTATGATCTGGTATTTA 57.834 33.333 11.37 0.00 38.33 1.40
1921 5203 8.880244 TGCTTATGTATGATCTGGTATTTAGGT 58.120 33.333 0.00 0.00 0.00 3.08
1931 5213 9.387397 TGATCTGGTATTTAGGTATGTATTGGA 57.613 33.333 0.00 0.00 0.00 3.53
1961 5243 7.732025 TGGACAGAGTTTAGTGAAGTTGATAA 58.268 34.615 0.00 0.00 0.00 1.75
1962 5244 8.375506 TGGACAGAGTTTAGTGAAGTTGATAAT 58.624 33.333 0.00 0.00 0.00 1.28
1963 5245 9.871238 GGACAGAGTTTAGTGAAGTTGATAATA 57.129 33.333 0.00 0.00 0.00 0.98
1989 5271 8.089625 TGTCCTATAGTCCAATTTCATTCAGA 57.910 34.615 0.00 0.00 0.00 3.27
2008 5290 7.906199 TTCAGATTTCCCCTTGAAAAACTTA 57.094 32.000 0.00 0.00 45.67 2.24
2010 5292 8.491045 TCAGATTTCCCCTTGAAAAACTTAAT 57.509 30.769 0.00 0.00 45.67 1.40
2011 5293 8.585018 TCAGATTTCCCCTTGAAAAACTTAATC 58.415 33.333 0.00 0.00 45.67 1.75
2103 5386 6.344500 TGCACATTTTTCCTGTGTGTAATTT 58.656 32.000 6.59 0.00 44.62 1.82
2112 5395 5.069318 TCCTGTGTGTAATTTCTTGCATCA 58.931 37.500 0.00 0.00 29.41 3.07
2124 5407 3.558411 GCATCACAGAGCGACCGC 61.558 66.667 6.25 6.25 42.33 5.68
2139 5422 1.678635 CCGCCAAAGAGCCCATCAA 60.679 57.895 0.00 0.00 0.00 2.57
2144 5427 2.353109 GCCAAAGAGCCCATCAAAAGAC 60.353 50.000 0.00 0.00 0.00 3.01
2163 5446 1.270518 ACATCACTGTGCTCTCACCAC 60.271 52.381 2.12 0.00 42.46 4.16
2234 5517 2.545946 GCTGCCTATCGGTTTGATTCTC 59.454 50.000 0.00 0.00 38.57 2.87
2309 5592 4.594675 TCTTCTCTACTCTACAAGGCCT 57.405 45.455 0.00 0.00 0.00 5.19
2354 5637 8.990163 TGTTTCTTCAGGAGGTTAGTTAAATT 57.010 30.769 0.00 0.00 0.00 1.82
2559 5842 1.615392 GAAGGTGCAGCAAAATCCTGT 59.385 47.619 19.63 0.00 32.93 4.00
2588 5871 0.463474 GGAGGAGGTGAGCTTCATGC 60.463 60.000 0.00 0.00 43.29 4.06
2638 5921 6.781138 ACATATACCTGCATTTTGTAACACG 58.219 36.000 0.00 0.00 0.00 4.49
2639 5922 4.695217 ATACCTGCATTTTGTAACACGG 57.305 40.909 0.00 0.00 0.00 4.94
2656 5939 5.934935 ACACGGTTTGGAGTAGTTTAATG 57.065 39.130 0.00 0.00 0.00 1.90
2751 6270 0.608035 TGCACAATCGAAGAACCCCC 60.608 55.000 0.00 0.00 43.58 5.40
2913 7646 2.173569 GGCAACCCTCATCAGTTATCCT 59.826 50.000 0.00 0.00 0.00 3.24
2999 7732 4.639078 TCTTCCATCTTCCAATGTGTGA 57.361 40.909 0.00 0.00 0.00 3.58
3022 7755 6.317140 TGACATCAGTTTCCAGAGCATTATTC 59.683 38.462 0.00 0.00 0.00 1.75
3027 7760 6.070251 TCAGTTTCCAGAGCATTATTCTACCA 60.070 38.462 0.00 0.00 0.00 3.25
3093 7827 8.038862 ACCATATTGAGTTATTGACCAGAGAT 57.961 34.615 0.00 0.00 0.00 2.75
3115 7849 8.388484 AGATTAGCCTAGCATAACAAATTCAG 57.612 34.615 0.00 0.00 0.00 3.02
3291 8025 4.928615 GCACAAAACAAGCATGCCTTATTA 59.071 37.500 15.66 0.00 31.00 0.98
3294 8028 4.736126 AAACAAGCATGCCTTATTACCC 57.264 40.909 15.66 0.00 31.00 3.69
3314 8048 3.306019 CCCTGTCTTTAACATTTGGGTGC 60.306 47.826 0.00 0.00 36.54 5.01
3378 8112 2.158900 AGCCATAGAAAGACATGGACCG 60.159 50.000 4.80 0.00 43.80 4.79
3380 8114 3.181469 GCCATAGAAAGACATGGACCGTA 60.181 47.826 4.80 0.00 43.80 4.02
3418 8153 2.859165 TGCAGCTAGTATATTGCCCC 57.141 50.000 0.00 0.00 35.75 5.80
3420 8155 2.038952 TGCAGCTAGTATATTGCCCCAG 59.961 50.000 0.00 0.00 35.75 4.45
3471 8206 3.893813 AGAATGAAGAACTGCAAAGCCTT 59.106 39.130 0.00 0.00 0.00 4.35
3537 8272 9.449719 AACCATAGTCGAAACTATTCAAAAGAT 57.550 29.630 0.00 0.00 44.62 2.40
3697 8433 6.605594 ACTTGTGTTCCTTTTCCTGTATTTCA 59.394 34.615 0.00 0.00 0.00 2.69
3704 8440 8.504815 GTTCCTTTTCCTGTATTTCAAGTACTC 58.495 37.037 0.00 0.00 0.00 2.59
3705 8441 7.166167 TCCTTTTCCTGTATTTCAAGTACTCC 58.834 38.462 0.00 0.00 0.00 3.85
3706 8442 6.374613 CCTTTTCCTGTATTTCAAGTACTCCC 59.625 42.308 0.00 0.00 0.00 4.30
3707 8443 6.697641 TTTCCTGTATTTCAAGTACTCCCT 57.302 37.500 0.00 0.00 0.00 4.20
3708 8444 5.934402 TCCTGTATTTCAAGTACTCCCTC 57.066 43.478 0.00 0.00 0.00 4.30
3709 8445 4.715297 TCCTGTATTTCAAGTACTCCCTCC 59.285 45.833 0.00 0.00 0.00 4.30
3710 8446 4.441634 CCTGTATTTCAAGTACTCCCTCCG 60.442 50.000 0.00 0.00 0.00 4.63
3711 8447 4.091549 TGTATTTCAAGTACTCCCTCCGT 58.908 43.478 0.00 0.00 0.00 4.69
3712 8448 3.889520 ATTTCAAGTACTCCCTCCGTC 57.110 47.619 0.00 0.00 0.00 4.79
3713 8449 2.599408 TTCAAGTACTCCCTCCGTCT 57.401 50.000 0.00 0.00 0.00 4.18
3714 8450 1.835494 TCAAGTACTCCCTCCGTCTG 58.165 55.000 0.00 0.00 0.00 3.51
3715 8451 1.075050 TCAAGTACTCCCTCCGTCTGT 59.925 52.381 0.00 0.00 0.00 3.41
3716 8452 2.306805 TCAAGTACTCCCTCCGTCTGTA 59.693 50.000 0.00 0.00 0.00 2.74
3717 8453 3.087031 CAAGTACTCCCTCCGTCTGTAA 58.913 50.000 0.00 0.00 0.00 2.41
3718 8454 3.446442 AGTACTCCCTCCGTCTGTAAA 57.554 47.619 0.00 0.00 0.00 2.01
3719 8455 3.978610 AGTACTCCCTCCGTCTGTAAAT 58.021 45.455 0.00 0.00 0.00 1.40
3720 8456 5.121380 AGTACTCCCTCCGTCTGTAAATA 57.879 43.478 0.00 0.00 0.00 1.40
3721 8457 4.886489 AGTACTCCCTCCGTCTGTAAATAC 59.114 45.833 0.00 0.00 0.00 1.89
3722 8458 3.029570 ACTCCCTCCGTCTGTAAATACC 58.970 50.000 0.00 0.00 0.00 2.73
3723 8459 3.297736 CTCCCTCCGTCTGTAAATACCT 58.702 50.000 0.00 0.00 0.00 3.08
3724 8460 3.028850 TCCCTCCGTCTGTAAATACCTG 58.971 50.000 0.00 0.00 0.00 4.00
3725 8461 2.764572 CCCTCCGTCTGTAAATACCTGT 59.235 50.000 0.00 0.00 0.00 4.00
3726 8462 3.181478 CCCTCCGTCTGTAAATACCTGTC 60.181 52.174 0.00 0.00 0.00 3.51
3727 8463 3.446161 CCTCCGTCTGTAAATACCTGTCA 59.554 47.826 0.00 0.00 0.00 3.58
3728 8464 4.099573 CCTCCGTCTGTAAATACCTGTCAT 59.900 45.833 0.00 0.00 0.00 3.06
3729 8465 5.258456 TCCGTCTGTAAATACCTGTCATC 57.742 43.478 0.00 0.00 0.00 2.92
3730 8466 4.707934 TCCGTCTGTAAATACCTGTCATCA 59.292 41.667 0.00 0.00 0.00 3.07
3731 8467 5.186215 TCCGTCTGTAAATACCTGTCATCAA 59.814 40.000 0.00 0.00 0.00 2.57
3732 8468 5.872617 CCGTCTGTAAATACCTGTCATCAAA 59.127 40.000 0.00 0.00 0.00 2.69
3733 8469 6.370442 CCGTCTGTAAATACCTGTCATCAAAA 59.630 38.462 0.00 0.00 0.00 2.44
3734 8470 7.065803 CCGTCTGTAAATACCTGTCATCAAAAT 59.934 37.037 0.00 0.00 0.00 1.82
3735 8471 7.904977 CGTCTGTAAATACCTGTCATCAAAATG 59.095 37.037 0.00 0.00 0.00 2.32
3736 8472 8.946085 GTCTGTAAATACCTGTCATCAAAATGA 58.054 33.333 0.00 0.00 39.63 2.57
3737 8473 9.513906 TCTGTAAATACCTGTCATCAAAATGAA 57.486 29.630 0.00 0.00 43.42 2.57
3745 8481 7.614494 ACCTGTCATCAAAATGAATAAAAGGG 58.386 34.615 0.00 0.00 43.42 3.95
3746 8482 7.454380 ACCTGTCATCAAAATGAATAAAAGGGA 59.546 33.333 0.00 0.00 43.42 4.20
3747 8483 8.313292 CCTGTCATCAAAATGAATAAAAGGGAA 58.687 33.333 0.00 0.00 43.42 3.97
3748 8484 9.880157 CTGTCATCAAAATGAATAAAAGGGAAT 57.120 29.630 0.00 0.00 43.42 3.01
3749 8485 9.656040 TGTCATCAAAATGAATAAAAGGGAATG 57.344 29.630 0.00 0.00 43.42 2.67
3750 8486 9.657419 GTCATCAAAATGAATAAAAGGGAATGT 57.343 29.630 0.00 0.00 43.42 2.71
3757 8493 9.713684 AAATGAATAAAAGGGAATGTATCTGGA 57.286 29.630 0.00 0.00 0.00 3.86
3758 8494 9.887862 AATGAATAAAAGGGAATGTATCTGGAT 57.112 29.630 0.00 0.00 0.00 3.41
3759 8495 8.696043 TGAATAAAAGGGAATGTATCTGGATG 57.304 34.615 0.00 0.00 0.00 3.51
3760 8496 8.281531 TGAATAAAAGGGAATGTATCTGGATGT 58.718 33.333 0.00 0.00 0.00 3.06
3761 8497 9.793259 GAATAAAAGGGAATGTATCTGGATGTA 57.207 33.333 0.00 0.00 0.00 2.29
3762 8498 9.799106 AATAAAAGGGAATGTATCTGGATGTAG 57.201 33.333 0.00 0.00 0.00 2.74
3763 8499 6.831664 AAAGGGAATGTATCTGGATGTAGT 57.168 37.500 0.00 0.00 0.00 2.73
3764 8500 6.831664 AAGGGAATGTATCTGGATGTAGTT 57.168 37.500 0.00 0.00 0.00 2.24
3765 8501 6.426646 AGGGAATGTATCTGGATGTAGTTC 57.573 41.667 0.00 0.00 0.00 3.01
3766 8502 6.146760 AGGGAATGTATCTGGATGTAGTTCT 58.853 40.000 0.00 0.00 0.00 3.01
3767 8503 7.306013 AGGGAATGTATCTGGATGTAGTTCTA 58.694 38.462 0.00 0.00 0.00 2.10
3768 8504 7.453126 AGGGAATGTATCTGGATGTAGTTCTAG 59.547 40.741 0.00 0.00 0.00 2.43
3769 8505 7.451877 GGGAATGTATCTGGATGTAGTTCTAGA 59.548 40.741 0.00 0.00 37.59 2.43
3770 8506 9.030452 GGAATGTATCTGGATGTAGTTCTAGAT 57.970 37.037 0.00 5.77 43.72 1.98
3775 8511 7.768807 ATCTGGATGTAGTTCTAGATACACC 57.231 40.000 8.10 11.10 40.80 4.16
3776 8512 6.069331 TCTGGATGTAGTTCTAGATACACCC 58.931 44.000 9.29 9.29 36.27 4.61
3777 8513 5.145564 TGGATGTAGTTCTAGATACACCCC 58.854 45.833 12.58 13.51 35.02 4.95
3778 8514 5.103215 TGGATGTAGTTCTAGATACACCCCT 60.103 44.000 12.58 0.00 35.02 4.79
3779 8515 5.839606 GGATGTAGTTCTAGATACACCCCTT 59.160 44.000 5.79 0.00 34.88 3.95
3780 8516 6.326843 GGATGTAGTTCTAGATACACCCCTTT 59.673 42.308 5.79 0.00 34.88 3.11
3781 8517 7.147532 GGATGTAGTTCTAGATACACCCCTTTT 60.148 40.741 5.79 0.00 34.88 2.27
3782 8518 7.563724 TGTAGTTCTAGATACACCCCTTTTT 57.436 36.000 2.64 0.00 0.00 1.94
3783 8519 7.391620 TGTAGTTCTAGATACACCCCTTTTTG 58.608 38.462 2.64 0.00 0.00 2.44
3784 8520 6.449830 AGTTCTAGATACACCCCTTTTTGT 57.550 37.500 0.00 0.00 0.00 2.83
3785 8521 6.473758 AGTTCTAGATACACCCCTTTTTGTC 58.526 40.000 0.00 0.00 0.00 3.18
3786 8522 5.431179 TCTAGATACACCCCTTTTTGTCC 57.569 43.478 0.00 0.00 0.00 4.02
3787 8523 4.847512 TCTAGATACACCCCTTTTTGTCCA 59.152 41.667 0.00 0.00 0.00 4.02
3788 8524 4.675063 AGATACACCCCTTTTTGTCCAT 57.325 40.909 0.00 0.00 0.00 3.41
3789 8525 5.010708 AGATACACCCCTTTTTGTCCATT 57.989 39.130 0.00 0.00 0.00 3.16
3790 8526 5.402630 AGATACACCCCTTTTTGTCCATTT 58.597 37.500 0.00 0.00 0.00 2.32
3791 8527 5.843969 AGATACACCCCTTTTTGTCCATTTT 59.156 36.000 0.00 0.00 0.00 1.82
3792 8528 4.149511 ACACCCCTTTTTGTCCATTTTG 57.850 40.909 0.00 0.00 0.00 2.44
3793 8529 3.777522 ACACCCCTTTTTGTCCATTTTGA 59.222 39.130 0.00 0.00 0.00 2.69
3794 8530 4.411869 ACACCCCTTTTTGTCCATTTTGAT 59.588 37.500 0.00 0.00 0.00 2.57
3795 8531 4.756135 CACCCCTTTTTGTCCATTTTGATG 59.244 41.667 0.00 0.00 0.00 3.07
3796 8532 4.657969 ACCCCTTTTTGTCCATTTTGATGA 59.342 37.500 0.00 0.00 0.00 2.92
3797 8533 4.996758 CCCCTTTTTGTCCATTTTGATGAC 59.003 41.667 0.00 0.00 0.00 3.06
3798 8534 5.454471 CCCCTTTTTGTCCATTTTGATGACA 60.454 40.000 0.00 0.00 0.00 3.58
3799 8535 6.054295 CCCTTTTTGTCCATTTTGATGACAA 58.946 36.000 0.00 0.00 34.47 3.18
3800 8536 6.203338 CCCTTTTTGTCCATTTTGATGACAAG 59.797 38.462 0.00 0.00 37.13 3.16
3801 8537 6.762661 CCTTTTTGTCCATTTTGATGACAAGT 59.237 34.615 0.00 0.00 37.13 3.16
3802 8538 7.280652 CCTTTTTGTCCATTTTGATGACAAGTT 59.719 33.333 0.00 0.00 37.13 2.66
3803 8539 8.558973 TTTTTGTCCATTTTGATGACAAGTTT 57.441 26.923 0.00 0.00 37.13 2.66
3804 8540 8.558973 TTTTGTCCATTTTGATGACAAGTTTT 57.441 26.923 0.00 0.00 37.13 2.43
3805 8541 8.558973 TTTGTCCATTTTGATGACAAGTTTTT 57.441 26.923 0.00 0.00 37.13 1.94
3820 8556 2.444281 TTTTTCGGACGGAGGGAGT 58.556 52.632 0.00 0.00 0.00 3.85
3821 8557 1.631405 TTTTTCGGACGGAGGGAGTA 58.369 50.000 0.00 0.00 0.00 2.59
3822 8558 0.890683 TTTTCGGACGGAGGGAGTAC 59.109 55.000 0.00 0.00 0.00 2.73
3823 8559 0.038744 TTTCGGACGGAGGGAGTACT 59.961 55.000 0.00 0.00 0.00 2.73
3913 8649 3.056536 AGTCGACTGCAGCTTTTGAGATA 60.057 43.478 19.30 0.00 0.00 1.98
3938 8674 2.015587 GCTTATGCTTGCAGCTCTCTT 58.984 47.619 0.87 0.00 42.97 2.85
3953 8689 2.928757 CTCTCTTCCATGCTTTCTGTCG 59.071 50.000 0.00 0.00 0.00 4.35
4040 8776 8.355169 TGTATTACCTCTGTCCATAAATACGAC 58.645 37.037 0.00 0.00 33.24 4.34
4041 8777 6.778834 TTACCTCTGTCCATAAATACGACA 57.221 37.500 0.00 0.00 35.34 4.35
4369 9271 8.363761 AGAGCTGGTTAATAACAGTAGTTACT 57.636 34.615 5.45 0.00 42.60 2.24
4396 9298 7.827236 TGTAGTTTTTGACATCTGTATTAGGGG 59.173 37.037 0.00 0.00 0.00 4.79
4542 9449 6.018751 GCATCGATTAACTTGTATCTGCTTGA 60.019 38.462 0.00 0.00 0.00 3.02
4571 9478 6.086765 GTGAACTTACATCAATTTGAGTTGCG 59.913 38.462 5.21 0.00 0.00 4.85
4582 9489 1.882912 TGAGTTGCGTTTCTCTGCAT 58.117 45.000 0.00 0.00 41.42 3.96
4596 9503 9.825972 CGTTTCTCTGCATTATTTTCTTTAGAA 57.174 29.630 0.00 0.00 0.00 2.10
4618 9542 7.989826 AGAAATAACATGGCACTGAGTTTATC 58.010 34.615 0.00 0.00 0.00 1.75
4754 9680 4.331968 TGGAAATACATGACACTGGGTTC 58.668 43.478 0.00 0.00 0.00 3.62
4756 9682 4.764823 GGAAATACATGACACTGGGTTCAA 59.235 41.667 0.00 0.00 0.00 2.69
4916 9842 8.807948 ATGCTTTTTCTGGTAAAGAATAGCTA 57.192 30.769 16.77 0.00 44.91 3.32
4917 9843 8.268850 TGCTTTTTCTGGTAAAGAATAGCTAG 57.731 34.615 16.77 0.00 44.91 3.42
4918 9844 7.148239 TGCTTTTTCTGGTAAAGAATAGCTAGC 60.148 37.037 6.62 6.62 44.91 3.42
4919 9845 7.066404 GCTTTTTCTGGTAAAGAATAGCTAGCT 59.934 37.037 23.12 23.12 44.46 3.32
4967 9893 0.523072 CCAAACTGCTACGCTGCATT 59.477 50.000 0.00 0.00 42.48 3.56
4968 9894 1.466360 CCAAACTGCTACGCTGCATTC 60.466 52.381 0.00 0.00 42.48 2.67
4996 9924 6.226052 GGATTCCCCATATCAAAATGCTTTC 58.774 40.000 0.00 0.00 34.14 2.62
5066 9994 2.888834 TCAACCTGGCTTTTCTTTGC 57.111 45.000 0.00 0.00 0.00 3.68
5070 9998 2.387757 ACCTGGCTTTTCTTTGCTTGA 58.612 42.857 0.00 0.00 0.00 3.02
5077 10005 4.990426 GGCTTTTCTTTGCTTGATGCTTTA 59.010 37.500 0.00 0.00 43.37 1.85
5162 10091 3.311596 GCCGCTTTAGTTAACCGATGAAT 59.688 43.478 0.88 0.00 0.00 2.57
5263 10195 7.843490 CATGAATCTTGATTTTTCATGCCTT 57.157 32.000 10.78 0.00 45.51 4.35
5271 10203 5.546526 TGATTTTTCATGCCTTTTGTACCC 58.453 37.500 0.00 0.00 0.00 3.69
5276 10208 4.584638 TCATGCCTTTTGTACCCATAGT 57.415 40.909 0.00 0.00 0.00 2.12
5277 10209 4.929479 TCATGCCTTTTGTACCCATAGTT 58.071 39.130 0.00 0.00 0.00 2.24
5289 10221 4.143986 ACCCATAGTTTTCTCTAGCAGC 57.856 45.455 0.00 0.00 0.00 5.25
5295 10227 3.586892 AGTTTTCTCTAGCAGCGGTAAC 58.413 45.455 0.00 0.00 0.00 2.50
5318 10250 3.576078 AGTGGAACATGTCTGTTTCCA 57.424 42.857 11.41 11.41 45.57 3.53
5319 10251 3.480470 AGTGGAACATGTCTGTTTCCAG 58.520 45.455 15.06 0.00 45.57 3.86
5372 10306 4.320567 GGCAAAGTAACAAGAGGAGAAAGC 60.321 45.833 0.00 0.00 0.00 3.51
5377 10311 5.486526 AGTAACAAGAGGAGAAAGCTCATG 58.513 41.667 0.00 0.00 43.14 3.07
5418 10352 6.168389 TCACCCTCTTTCGTTTAGTATTTCC 58.832 40.000 0.00 0.00 0.00 3.13
5420 10354 6.092259 CACCCTCTTTCGTTTAGTATTTCCAG 59.908 42.308 0.00 0.00 0.00 3.86
5430 10370 8.472413 TCGTTTAGTATTTCCAGTAATGCTAGT 58.528 33.333 0.00 0.00 35.23 2.57
5435 10375 7.275920 AGTATTTCCAGTAATGCTAGTTCCTG 58.724 38.462 0.00 0.00 30.12 3.86
5439 10379 4.530553 TCCAGTAATGCTAGTTCCTGTTGA 59.469 41.667 0.00 0.00 0.00 3.18
5461 10401 8.979574 GTTGATATCTATTTAAAGACCTGACCG 58.020 37.037 3.98 0.00 0.00 4.79
5483 10431 2.097825 AGCTGAAACCTCATTGCCATC 58.902 47.619 0.00 0.00 0.00 3.51
5518 10466 4.099266 TGGTCTGGAAATCAAAAACCTGTG 59.901 41.667 0.00 0.00 0.00 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.231235 CCTTTGGCGGTCTGCTTTATTT 59.769 45.455 3.10 0.00 45.43 1.40
1 2 1.818674 CCTTTGGCGGTCTGCTTTATT 59.181 47.619 3.10 0.00 45.43 1.40
94 95 1.408702 TCTTTGGGCTTGTTGAGTTGC 59.591 47.619 0.00 0.00 0.00 4.17
97 98 4.466015 TCTTTTTCTTTGGGCTTGTTGAGT 59.534 37.500 0.00 0.00 0.00 3.41
244 3156 3.040147 ACGGTCATCAACGTGATCTTT 57.960 42.857 0.00 0.00 42.39 2.52
307 3219 1.813102 GGACCATCTCCCTCATTCCT 58.187 55.000 0.00 0.00 31.83 3.36
462 3374 2.641815 GAGGCCATCAGGGATATGAACT 59.358 50.000 5.01 0.00 40.01 3.01
470 3382 2.367377 CTGGGAGGCCATCAGGGA 60.367 66.667 5.01 0.00 40.01 4.20
498 3410 1.381327 CTGACGGCCCCCTTCTCTA 60.381 63.158 0.00 0.00 0.00 2.43
559 3471 1.480137 CTCTCTCTCGCCCTTGATTGT 59.520 52.381 0.00 0.00 0.00 2.71
812 3724 0.968393 GACCTCGAGGACCAGCTCTT 60.968 60.000 37.69 12.12 38.94 2.85
855 3767 0.892358 TGACGCGGTTGGTCTCTACT 60.892 55.000 12.47 0.00 35.45 2.57
857 3769 1.880894 CTGACGCGGTTGGTCTCTA 59.119 57.895 12.47 0.00 35.45 2.43
988 3900 0.823460 TCATAGACGCATGGCACTCA 59.177 50.000 0.00 0.00 0.00 3.41
989 3901 1.212616 GTCATAGACGCATGGCACTC 58.787 55.000 0.00 0.00 30.66 3.51
1068 3980 2.039405 CGAGAACGGGGAGTCGAGT 61.039 63.158 0.00 0.00 34.28 4.18
1069 3981 2.792599 CGAGAACGGGGAGTCGAG 59.207 66.667 0.00 0.00 34.28 4.04
1070 3982 3.437795 GCGAGAACGGGGAGTCGA 61.438 66.667 0.00 0.00 40.15 4.20
1071 3983 4.493747 GGCGAGAACGGGGAGTCG 62.494 72.222 0.00 0.00 40.15 4.18
1072 3984 4.144703 GGGCGAGAACGGGGAGTC 62.145 72.222 0.00 0.00 40.15 3.36
1303 4236 1.535687 AACTCACGGGTAGGGCTGT 60.536 57.895 0.00 0.00 0.00 4.40
1330 4263 2.809601 CAAACGAGGACGCCGGAG 60.810 66.667 5.05 3.72 43.96 4.63
1348 4281 1.416813 GAGTCAGCGCGTGGATCAAG 61.417 60.000 8.43 0.00 0.00 3.02
1407 4353 3.103911 CGAACACCGCGACCAGAC 61.104 66.667 8.23 0.00 0.00 3.51
1526 4472 2.220479 GTAGCACACGATCCTAACCC 57.780 55.000 0.00 0.00 0.00 4.11
1534 4480 9.859497 ACAAATACTGTAACCGTAGCACACGAT 62.859 40.741 11.93 3.99 44.94 3.73
1535 4481 8.658608 ACAAATACTGTAACCGTAGCACACGA 62.659 42.308 11.93 0.00 44.94 4.35
1536 4482 6.576307 ACAAATACTGTAACCGTAGCACACG 61.576 44.000 4.06 4.06 43.05 4.49
1537 4483 4.687483 ACAAATACTGTAACCGTAGCACAC 59.313 41.667 0.00 0.00 36.10 3.82
1538 4484 4.885413 ACAAATACTGTAACCGTAGCACA 58.115 39.130 0.00 0.00 36.10 4.57
1539 4485 4.925054 TGACAAATACTGTAACCGTAGCAC 59.075 41.667 0.00 0.00 38.84 4.40
1540 4486 5.136816 TGACAAATACTGTAACCGTAGCA 57.863 39.130 0.00 0.00 38.84 3.49
1541 4487 5.061808 CACTGACAAATACTGTAACCGTAGC 59.938 44.000 0.00 0.00 38.84 3.58
1542 4488 5.061808 GCACTGACAAATACTGTAACCGTAG 59.938 44.000 0.00 0.00 38.84 3.51
1543 4489 4.925054 GCACTGACAAATACTGTAACCGTA 59.075 41.667 0.00 0.00 38.84 4.02
1544 4490 3.744426 GCACTGACAAATACTGTAACCGT 59.256 43.478 0.00 0.00 38.84 4.83
1545 4491 3.181534 CGCACTGACAAATACTGTAACCG 60.182 47.826 0.00 0.00 38.84 4.44
1546 4492 3.424433 GCGCACTGACAAATACTGTAACC 60.424 47.826 0.30 0.00 38.84 2.85
1547 4493 3.424433 GGCGCACTGACAAATACTGTAAC 60.424 47.826 10.83 0.00 38.84 2.50
1548 4494 2.739913 GGCGCACTGACAAATACTGTAA 59.260 45.455 10.83 0.00 38.84 2.41
1549 4495 2.343101 GGCGCACTGACAAATACTGTA 58.657 47.619 10.83 0.00 38.84 2.74
1550 4496 1.156736 GGCGCACTGACAAATACTGT 58.843 50.000 10.83 0.00 42.61 3.55
1551 4497 0.095245 CGGCGCACTGACAAATACTG 59.905 55.000 10.83 0.00 0.00 2.74
1552 4498 0.320421 ACGGCGCACTGACAAATACT 60.320 50.000 10.83 0.00 0.00 2.12
1553 4499 0.179225 CACGGCGCACTGACAAATAC 60.179 55.000 10.83 0.00 0.00 1.89
1554 4500 1.295357 CCACGGCGCACTGACAAATA 61.295 55.000 10.83 0.00 0.00 1.40
1555 4501 2.616330 CCACGGCGCACTGACAAAT 61.616 57.895 10.83 0.00 0.00 2.32
1556 4502 3.276091 CCACGGCGCACTGACAAA 61.276 61.111 10.83 0.00 0.00 2.83
1557 4503 4.228567 TCCACGGCGCACTGACAA 62.229 61.111 10.83 0.00 0.00 3.18
1558 4504 4.961511 GTCCACGGCGCACTGACA 62.962 66.667 10.83 0.00 0.00 3.58
1559 4505 4.961511 TGTCCACGGCGCACTGAC 62.962 66.667 10.83 10.60 0.00 3.51
1560 4506 3.932580 GATGTCCACGGCGCACTGA 62.933 63.158 10.83 0.00 0.00 3.41
1561 4507 3.490759 GATGTCCACGGCGCACTG 61.491 66.667 10.83 2.64 0.00 3.66
1562 4508 4.760047 GGATGTCCACGGCGCACT 62.760 66.667 10.83 0.00 35.64 4.40
1563 4509 4.760047 AGGATGTCCACGGCGCAC 62.760 66.667 10.83 1.39 38.89 5.34
1564 4510 3.950794 GAAGGATGTCCACGGCGCA 62.951 63.158 10.83 0.00 38.89 6.09
1565 4511 3.195698 GAAGGATGTCCACGGCGC 61.196 66.667 6.90 0.00 38.89 6.53
1566 4512 1.361668 CTTGAAGGATGTCCACGGCG 61.362 60.000 4.80 4.80 38.89 6.46
1567 4513 1.648467 GCTTGAAGGATGTCCACGGC 61.648 60.000 1.30 1.38 38.89 5.68
1568 4514 0.036010 AGCTTGAAGGATGTCCACGG 60.036 55.000 1.30 0.00 38.89 4.94
1569 4515 1.066573 AGAGCTTGAAGGATGTCCACG 60.067 52.381 1.30 0.00 38.89 4.94
1570 4516 2.626840 GAGAGCTTGAAGGATGTCCAC 58.373 52.381 1.30 0.00 38.89 4.02
1571 4517 1.556911 GGAGAGCTTGAAGGATGTCCA 59.443 52.381 1.30 0.00 35.51 4.02
1572 4518 1.836802 AGGAGAGCTTGAAGGATGTCC 59.163 52.381 0.00 0.00 35.64 4.02
1573 4519 3.269178 CAAGGAGAGCTTGAAGGATGTC 58.731 50.000 0.00 0.00 33.98 3.06
1574 4520 2.641815 ACAAGGAGAGCTTGAAGGATGT 59.358 45.455 0.00 0.00 35.88 3.06
1575 4521 3.347077 ACAAGGAGAGCTTGAAGGATG 57.653 47.619 0.00 0.00 35.88 3.51
1576 4522 5.707066 AATACAAGGAGAGCTTGAAGGAT 57.293 39.130 0.00 0.00 35.88 3.24
1630 4631 6.481954 GGTCAACTAACATTGTAGACCAAG 57.518 41.667 14.87 1.46 42.65 3.61
1753 4757 1.024579 AATTACCTTGTGCCTCCGCG 61.025 55.000 0.00 0.00 38.08 6.46
1756 4760 3.367395 GCAAGAAATTACCTTGTGCCTCC 60.367 47.826 16.87 2.18 42.11 4.30
1915 5197 8.994500 TGTCCAATACTCCAATACATACCTAAA 58.006 33.333 0.00 0.00 0.00 1.85
1916 5198 8.555896 TGTCCAATACTCCAATACATACCTAA 57.444 34.615 0.00 0.00 0.00 2.69
1918 5200 6.844388 TCTGTCCAATACTCCAATACATACCT 59.156 38.462 0.00 0.00 0.00 3.08
1921 5203 7.914427 ACTCTGTCCAATACTCCAATACATA 57.086 36.000 0.00 0.00 0.00 2.29
1922 5204 6.814954 ACTCTGTCCAATACTCCAATACAT 57.185 37.500 0.00 0.00 0.00 2.29
1923 5205 6.620877 AACTCTGTCCAATACTCCAATACA 57.379 37.500 0.00 0.00 0.00 2.29
1924 5206 8.258708 ACTAAACTCTGTCCAATACTCCAATAC 58.741 37.037 0.00 0.00 0.00 1.89
1925 5207 8.258007 CACTAAACTCTGTCCAATACTCCAATA 58.742 37.037 0.00 0.00 0.00 1.90
1926 5208 7.038302 TCACTAAACTCTGTCCAATACTCCAAT 60.038 37.037 0.00 0.00 0.00 3.16
1927 5209 6.269077 TCACTAAACTCTGTCCAATACTCCAA 59.731 38.462 0.00 0.00 0.00 3.53
1928 5210 5.778241 TCACTAAACTCTGTCCAATACTCCA 59.222 40.000 0.00 0.00 0.00 3.86
1929 5211 6.282199 TCACTAAACTCTGTCCAATACTCC 57.718 41.667 0.00 0.00 0.00 3.85
1930 5212 7.379750 ACTTCACTAAACTCTGTCCAATACTC 58.620 38.462 0.00 0.00 0.00 2.59
1931 5213 7.304497 ACTTCACTAAACTCTGTCCAATACT 57.696 36.000 0.00 0.00 0.00 2.12
1936 5218 5.607939 TCAACTTCACTAAACTCTGTCCA 57.392 39.130 0.00 0.00 0.00 4.02
1963 5245 8.717717 TCTGAATGAAATTGGACTATAGGACAT 58.282 33.333 4.43 0.00 36.07 3.06
2103 5386 0.390340 GGTCGCTCTGTGATGCAAGA 60.390 55.000 0.00 0.00 0.00 3.02
2112 5395 2.357517 CTTTGGCGGTCGCTCTGT 60.358 61.111 15.04 0.00 41.60 3.41
2124 5407 2.892852 TGTCTTTTGATGGGCTCTTTGG 59.107 45.455 0.00 0.00 0.00 3.28
2139 5422 3.397482 GTGAGAGCACAGTGATGTCTTT 58.603 45.455 16.20 0.00 44.51 2.52
2144 5427 1.436600 GTGGTGAGAGCACAGTGATG 58.563 55.000 4.15 0.00 46.96 3.07
2163 5446 9.118236 GAATTTCCTAAGAACTTGTTTCGAATG 57.882 33.333 0.00 0.00 39.47 2.67
2234 5517 2.159393 CCGCCAACCATACACAATCAAG 60.159 50.000 0.00 0.00 0.00 3.02
2309 5592 7.349859 AGAAACAAGTATATGGAATAGGGGTCA 59.650 37.037 0.00 0.00 28.50 4.02
2385 5668 6.701145 TTAAGCACCATCAAACTGTAAACA 57.299 33.333 0.00 0.00 0.00 2.83
2483 5766 6.419791 TCAGGTAACAGAAGAAGGAAAAACA 58.580 36.000 0.00 0.00 41.41 2.83
2512 5795 8.352201 CCTTGATGAATCTGAAACAGTAAAACA 58.648 33.333 0.00 0.00 32.61 2.83
2513 5796 7.809806 CCCTTGATGAATCTGAAACAGTAAAAC 59.190 37.037 0.00 0.00 32.61 2.43
2559 5842 3.107601 CTCACCTCCTCCTTCCACAATA 58.892 50.000 0.00 0.00 0.00 1.90
2638 5921 7.662669 TGTAGAACCATTAAACTACTCCAAACC 59.337 37.037 0.00 0.00 36.95 3.27
2639 5922 8.501580 GTGTAGAACCATTAAACTACTCCAAAC 58.498 37.037 0.00 0.00 36.95 2.93
2931 7664 1.671054 GCTTGACCGCAACCTGCTA 60.671 57.895 0.00 0.00 42.25 3.49
2946 7679 4.840716 AGATCCTCATTCAAGACTGCTT 57.159 40.909 0.00 0.00 33.74 3.91
2951 7684 7.281774 TGCTATTCAAAGATCCTCATTCAAGAC 59.718 37.037 0.00 0.00 0.00 3.01
2958 7691 6.941436 GGAAGATGCTATTCAAAGATCCTCAT 59.059 38.462 0.00 0.00 0.00 2.90
2963 7696 7.982761 AGATGGAAGATGCTATTCAAAGATC 57.017 36.000 0.00 0.00 0.00 2.75
2999 7732 6.421485 AGAATAATGCTCTGGAAACTGATGT 58.579 36.000 0.00 0.00 37.69 3.06
3022 7755 2.821969 AGAGCAAAAACTGGCATGGTAG 59.178 45.455 0.00 0.00 0.00 3.18
3027 7760 4.122046 GTTTTCAGAGCAAAAACTGGCAT 58.878 39.130 4.64 0.00 41.31 4.40
3093 7827 8.752005 ATTCTGAATTTGTTATGCTAGGCTAA 57.248 30.769 0.00 0.00 0.00 3.09
3131 7865 1.002142 GCCGTTGGTGGTTGAGTAAAC 60.002 52.381 0.00 0.00 38.12 2.01
3291 8025 4.193240 ACCCAAATGTTAAAGACAGGGT 57.807 40.909 0.00 0.00 45.10 4.34
3294 8028 4.853924 AGCACCCAAATGTTAAAGACAG 57.146 40.909 0.00 0.00 42.62 3.51
3314 8048 6.887368 TCTCACGTGTGATAACATTCAAAAG 58.113 36.000 16.51 0.00 39.13 2.27
3400 8134 2.303022 TCTGGGGCAATATACTAGCTGC 59.697 50.000 0.00 0.00 0.00 5.25
3401 8135 4.623932 TTCTGGGGCAATATACTAGCTG 57.376 45.455 0.00 0.00 0.00 4.24
3450 8185 3.930634 AGGCTTTGCAGTTCTTCATTC 57.069 42.857 0.00 0.00 0.00 2.67
3471 8206 6.406849 CCTTCAGGAACCAAAGAAAAATCACA 60.407 38.462 7.32 0.00 37.39 3.58
3551 8286 5.831525 TCTCTACTCCACAAGTACAAGTCAA 59.168 40.000 0.00 0.00 39.55 3.18
3697 8433 3.446442 TTACAGACGGAGGGAGTACTT 57.554 47.619 0.00 0.00 0.00 2.24
3704 8440 2.764572 ACAGGTATTTACAGACGGAGGG 59.235 50.000 0.00 0.00 0.00 4.30
3705 8441 3.446161 TGACAGGTATTTACAGACGGAGG 59.554 47.826 0.00 0.00 0.00 4.30
3706 8442 4.713824 TGACAGGTATTTACAGACGGAG 57.286 45.455 0.00 0.00 0.00 4.63
3707 8443 4.707934 TGATGACAGGTATTTACAGACGGA 59.292 41.667 0.00 0.00 0.00 4.69
3708 8444 5.006153 TGATGACAGGTATTTACAGACGG 57.994 43.478 0.00 0.00 0.00 4.79
3709 8445 6.961359 TTTGATGACAGGTATTTACAGACG 57.039 37.500 0.00 0.00 0.00 4.18
3710 8446 8.946085 TCATTTTGATGACAGGTATTTACAGAC 58.054 33.333 0.00 0.00 0.00 3.51
3711 8447 9.513906 TTCATTTTGATGACAGGTATTTACAGA 57.486 29.630 0.00 0.00 0.00 3.41
3719 8455 8.748412 CCCTTTTATTCATTTTGATGACAGGTA 58.252 33.333 0.00 0.00 0.00 3.08
3720 8456 7.454380 TCCCTTTTATTCATTTTGATGACAGGT 59.546 33.333 0.00 0.00 0.00 4.00
3721 8457 7.839907 TCCCTTTTATTCATTTTGATGACAGG 58.160 34.615 0.00 0.00 0.00 4.00
3722 8458 9.880157 ATTCCCTTTTATTCATTTTGATGACAG 57.120 29.630 0.00 0.00 0.00 3.51
3723 8459 9.656040 CATTCCCTTTTATTCATTTTGATGACA 57.344 29.630 0.00 0.00 0.00 3.58
3724 8460 9.657419 ACATTCCCTTTTATTCATTTTGATGAC 57.343 29.630 0.00 0.00 0.00 3.06
3731 8467 9.713684 TCCAGATACATTCCCTTTTATTCATTT 57.286 29.630 0.00 0.00 0.00 2.32
3732 8468 9.887862 ATCCAGATACATTCCCTTTTATTCATT 57.112 29.630 0.00 0.00 0.00 2.57
3733 8469 9.305555 CATCCAGATACATTCCCTTTTATTCAT 57.694 33.333 0.00 0.00 0.00 2.57
3734 8470 8.281531 ACATCCAGATACATTCCCTTTTATTCA 58.718 33.333 0.00 0.00 0.00 2.57
3735 8471 8.697507 ACATCCAGATACATTCCCTTTTATTC 57.302 34.615 0.00 0.00 0.00 1.75
3736 8472 9.799106 CTACATCCAGATACATTCCCTTTTATT 57.201 33.333 0.00 0.00 0.00 1.40
3737 8473 8.949421 ACTACATCCAGATACATTCCCTTTTAT 58.051 33.333 0.00 0.00 0.00 1.40
3738 8474 8.331931 ACTACATCCAGATACATTCCCTTTTA 57.668 34.615 0.00 0.00 0.00 1.52
3739 8475 7.213178 ACTACATCCAGATACATTCCCTTTT 57.787 36.000 0.00 0.00 0.00 2.27
3740 8476 6.831664 ACTACATCCAGATACATTCCCTTT 57.168 37.500 0.00 0.00 0.00 3.11
3741 8477 6.617371 AGAACTACATCCAGATACATTCCCTT 59.383 38.462 0.00 0.00 0.00 3.95
3742 8478 6.146760 AGAACTACATCCAGATACATTCCCT 58.853 40.000 0.00 0.00 0.00 4.20
3743 8479 6.426646 AGAACTACATCCAGATACATTCCC 57.573 41.667 0.00 0.00 0.00 3.97
3744 8480 8.410673 TCTAGAACTACATCCAGATACATTCC 57.589 38.462 0.00 0.00 0.00 3.01
3748 8484 9.286170 GTGTATCTAGAACTACATCCAGATACA 57.714 37.037 16.33 16.33 46.15 2.29
3749 8485 8.732531 GGTGTATCTAGAACTACATCCAGATAC 58.267 40.741 8.97 12.80 42.39 2.24
3750 8486 7.889073 GGGTGTATCTAGAACTACATCCAGATA 59.111 40.741 22.85 0.00 44.92 1.98
3751 8487 6.722129 GGGTGTATCTAGAACTACATCCAGAT 59.278 42.308 22.85 0.00 44.92 2.90
3752 8488 6.069331 GGGTGTATCTAGAACTACATCCAGA 58.931 44.000 22.85 0.00 44.92 3.86
3753 8489 5.244178 GGGGTGTATCTAGAACTACATCCAG 59.756 48.000 26.44 0.00 46.58 3.86
3754 8490 5.103215 AGGGGTGTATCTAGAACTACATCCA 60.103 44.000 26.44 3.58 46.58 3.41
3755 8491 5.395611 AGGGGTGTATCTAGAACTACATCC 58.604 45.833 20.85 20.85 44.86 3.51
3756 8492 6.980416 AAGGGGTGTATCTAGAACTACATC 57.020 41.667 8.97 8.40 31.06 3.06
3757 8493 7.750947 AAAAGGGGTGTATCTAGAACTACAT 57.249 36.000 8.97 0.00 31.06 2.29
3758 8494 7.016858 ACAAAAAGGGGTGTATCTAGAACTACA 59.983 37.037 0.00 0.00 0.00 2.74
3759 8495 7.392418 ACAAAAAGGGGTGTATCTAGAACTAC 58.608 38.462 0.00 0.00 0.00 2.73
3760 8496 7.310858 GGACAAAAAGGGGTGTATCTAGAACTA 60.311 40.741 0.00 0.00 0.00 2.24
3761 8497 6.449830 ACAAAAAGGGGTGTATCTAGAACT 57.550 37.500 0.00 0.00 0.00 3.01
3762 8498 5.646793 GGACAAAAAGGGGTGTATCTAGAAC 59.353 44.000 0.00 0.00 0.00 3.01
3763 8499 5.311121 TGGACAAAAAGGGGTGTATCTAGAA 59.689 40.000 0.00 0.00 0.00 2.10
3764 8500 4.847512 TGGACAAAAAGGGGTGTATCTAGA 59.152 41.667 0.00 0.00 0.00 2.43
3765 8501 5.174037 TGGACAAAAAGGGGTGTATCTAG 57.826 43.478 0.00 0.00 0.00 2.43
3766 8502 5.789574 ATGGACAAAAAGGGGTGTATCTA 57.210 39.130 0.00 0.00 0.00 1.98
3767 8503 4.675063 ATGGACAAAAAGGGGTGTATCT 57.325 40.909 0.00 0.00 0.00 1.98
3768 8504 5.738619 AAATGGACAAAAAGGGGTGTATC 57.261 39.130 0.00 0.00 0.00 2.24
3769 8505 5.604650 TCAAAATGGACAAAAAGGGGTGTAT 59.395 36.000 0.00 0.00 0.00 2.29
3770 8506 4.962995 TCAAAATGGACAAAAAGGGGTGTA 59.037 37.500 0.00 0.00 0.00 2.90
3771 8507 3.777522 TCAAAATGGACAAAAAGGGGTGT 59.222 39.130 0.00 0.00 0.00 4.16
3772 8508 4.414337 TCAAAATGGACAAAAAGGGGTG 57.586 40.909 0.00 0.00 0.00 4.61
3773 8509 4.657969 TCATCAAAATGGACAAAAAGGGGT 59.342 37.500 0.00 0.00 33.42 4.95
3774 8510 4.996758 GTCATCAAAATGGACAAAAAGGGG 59.003 41.667 0.00 0.00 33.42 4.79
3775 8511 5.609423 TGTCATCAAAATGGACAAAAAGGG 58.391 37.500 0.00 0.00 33.42 3.95
3776 8512 6.762661 ACTTGTCATCAAAATGGACAAAAAGG 59.237 34.615 7.70 0.11 34.98 3.11
3777 8513 7.775397 ACTTGTCATCAAAATGGACAAAAAG 57.225 32.000 7.70 0.11 34.98 2.27
3778 8514 8.558973 AAACTTGTCATCAAAATGGACAAAAA 57.441 26.923 7.70 0.00 34.98 1.94
3779 8515 8.558973 AAAACTTGTCATCAAAATGGACAAAA 57.441 26.923 7.70 0.00 34.98 2.44
3780 8516 8.558973 AAAAACTTGTCATCAAAATGGACAAA 57.441 26.923 7.70 0.00 34.98 2.83
3802 8538 1.273327 GTACTCCCTCCGTCCGAAAAA 59.727 52.381 0.00 0.00 0.00 1.94
3803 8539 0.890683 GTACTCCCTCCGTCCGAAAA 59.109 55.000 0.00 0.00 0.00 2.29
3804 8540 0.038744 AGTACTCCCTCCGTCCGAAA 59.961 55.000 0.00 0.00 0.00 3.46
3805 8541 0.911769 TAGTACTCCCTCCGTCCGAA 59.088 55.000 0.00 0.00 0.00 4.30
3806 8542 0.467384 CTAGTACTCCCTCCGTCCGA 59.533 60.000 0.00 0.00 0.00 4.55
3807 8543 0.179936 ACTAGTACTCCCTCCGTCCG 59.820 60.000 0.00 0.00 0.00 4.79
3808 8544 2.433662 AACTAGTACTCCCTCCGTCC 57.566 55.000 0.00 0.00 0.00 4.79
3809 8545 5.128919 TCATAAACTAGTACTCCCTCCGTC 58.871 45.833 0.00 0.00 0.00 4.79
3810 8546 5.121380 TCATAAACTAGTACTCCCTCCGT 57.879 43.478 0.00 0.00 0.00 4.69
3811 8547 6.651975 AATCATAAACTAGTACTCCCTCCG 57.348 41.667 0.00 0.00 0.00 4.63
3812 8548 7.147532 ACCAAATCATAAACTAGTACTCCCTCC 60.148 40.741 0.00 0.00 0.00 4.30
3813 8549 7.793036 ACCAAATCATAAACTAGTACTCCCTC 58.207 38.462 0.00 0.00 0.00 4.30
3814 8550 7.750947 ACCAAATCATAAACTAGTACTCCCT 57.249 36.000 0.00 0.00 0.00 4.20
3815 8551 9.895138 TTTACCAAATCATAAACTAGTACTCCC 57.105 33.333 0.00 0.00 0.00 4.30
3938 8674 1.741401 CGGCGACAGAAAGCATGGA 60.741 57.895 0.00 0.00 34.54 3.41
3953 8689 3.035251 GCAAATTTCTTTTGTTTGCGGC 58.965 40.909 6.33 0.00 45.33 6.53
4037 8773 4.858935 ACTTCACCAAAAATCATGTGTCG 58.141 39.130 0.00 0.00 0.00 4.35
4040 8776 7.377398 TCCATTACTTCACCAAAAATCATGTG 58.623 34.615 0.00 0.00 0.00 3.21
4041 8777 7.537596 TCCATTACTTCACCAAAAATCATGT 57.462 32.000 0.00 0.00 0.00 3.21
4107 9009 2.027192 ACATAAAAGGAGCGCTGAGGAA 60.027 45.455 18.48 0.00 0.00 3.36
4369 9271 9.226606 CCCTAATACAGATGTCAAAAACTACAA 57.773 33.333 0.00 0.00 0.00 2.41
4450 9352 4.273969 TCCGGACAAACTTGTGATGTTAAC 59.726 41.667 0.00 0.00 42.43 2.01
4542 9449 8.225603 ACTCAAATTGATGTAAGTTCACACTT 57.774 30.769 0.00 0.00 45.73 3.16
4596 9503 6.886459 ACAGATAAACTCAGTGCCATGTTATT 59.114 34.615 0.00 0.00 0.00 1.40
4618 9542 5.919272 AACAGAATGATCGCATATCACAG 57.081 39.130 1.06 0.00 39.69 3.66
4754 9680 8.405418 ACAGAATGATCTTCATATCCCAATTG 57.595 34.615 0.00 0.00 39.69 2.32
4781 9707 7.806180 AGAGGCCTTGTTACATCATAAGTAAT 58.194 34.615 6.77 0.00 34.34 1.89
4894 9820 8.394121 CAGCTAGCTATTCTTTACCAGAAAAAG 58.606 37.037 18.86 0.00 45.06 2.27
4967 9893 4.991789 TTTGATATGGGGAATCCGATGA 57.008 40.909 0.00 0.00 38.76 2.92
4968 9894 5.622914 GCATTTTGATATGGGGAATCCGATG 60.623 44.000 0.00 0.00 38.76 3.84
4996 9924 9.731819 CTTCCAATACAGATGAAATGAAAGATG 57.268 33.333 0.00 0.00 0.00 2.90
5066 9994 6.981762 ACTGATTCTCACTAAAGCATCAAG 57.018 37.500 0.00 0.00 30.28 3.02
5070 9998 8.671921 CATGTAAACTGATTCTCACTAAAGCAT 58.328 33.333 0.00 0.00 0.00 3.79
5077 10005 9.512588 AAATTCTCATGTAAACTGATTCTCACT 57.487 29.630 0.00 0.00 0.00 3.41
5096 10024 7.066404 GGTATGGACAAGAGGAAAGAAATTCTC 59.934 40.741 0.00 0.00 38.18 2.87
5263 10195 7.011499 TGCTAGAGAAAACTATGGGTACAAA 57.989 36.000 0.00 0.00 0.00 2.83
5271 10203 3.786635 ACCGCTGCTAGAGAAAACTATG 58.213 45.455 0.00 0.00 0.00 2.23
5276 10208 2.300723 TGGTTACCGCTGCTAGAGAAAA 59.699 45.455 0.00 0.00 0.00 2.29
5277 10209 1.897133 TGGTTACCGCTGCTAGAGAAA 59.103 47.619 0.00 0.00 0.00 2.52
5289 10221 2.482721 GACATGTTCCACTTGGTTACCG 59.517 50.000 0.00 0.00 36.34 4.02
5418 10352 8.147058 AGATATCAACAGGAACTAGCATTACTG 58.853 37.037 5.32 4.19 44.89 2.74
5435 10375 8.979574 CGGTCAGGTCTTTAAATAGATATCAAC 58.020 37.037 5.32 0.00 0.00 3.18
5439 10379 7.062749 TGCGGTCAGGTCTTTAAATAGATAT 57.937 36.000 0.00 0.00 0.00 1.63
5461 10401 0.108945 GGCAATGAGGTTTCAGCTGC 60.109 55.000 9.47 0.00 41.74 5.25
5483 10431 0.732880 CCAGACCAGTGCGTCTAACG 60.733 60.000 12.23 0.00 41.23 3.18
5518 10466 4.858935 TGCAAAGCTCAGATAAACACAAC 58.141 39.130 0.00 0.00 0.00 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.