Multiple sequence alignment - TraesCS3A01G091500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G091500 chr3A 100.000 3054 0 0 1 3054 57860493 57863546 0.000000e+00 5640
1 TraesCS3A01G091500 chr3B 91.369 2885 200 23 209 3054 72319056 72321930 0.000000e+00 3903
2 TraesCS3A01G091500 chr3B 89.266 177 19 0 6 182 72318884 72319060 3.960000e-54 222
3 TraesCS3A01G091500 chr3D 92.996 1799 91 7 632 2396 46251049 46252846 0.000000e+00 2591
4 TraesCS3A01G091500 chr3D 86.811 599 65 5 2460 3044 46253161 46253759 0.000000e+00 656
5 TraesCS3A01G091500 chr3D 82.821 390 36 13 2 390 46250699 46251058 1.370000e-83 320


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G091500 chr3A 57860493 57863546 3053 False 5640.0 5640 100.000000 1 3054 1 chr3A.!!$F1 3053
1 TraesCS3A01G091500 chr3B 72318884 72321930 3046 False 2062.5 3903 90.317500 6 3054 2 chr3B.!!$F1 3048
2 TraesCS3A01G091500 chr3D 46250699 46253759 3060 False 1189.0 2591 87.542667 2 3044 3 chr3D.!!$F1 3042

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
700 710 1.012086 CCGAGCCATGATGTTGTGAG 58.988 55.0 0.0 0.0 0.0 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2420 2463 0.98423 GACCTTGGAGATGTGACCCA 59.016 55.0 0.0 0.0 0.0 4.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 7.844493 ATTATTCCATATGAAACTGGCATGT 57.156 32.000 3.65 0.00 36.33 3.21
56 57 8.668353 TCAAATGAGACATGCTGAACTTTATAC 58.332 33.333 0.00 0.00 0.00 1.47
97 98 8.977505 GTTTGTGCAAAATTACATGTGATACTT 58.022 29.630 9.11 0.42 31.33 2.24
115 116 9.669353 GTGATACTTAATTTTACATGCATGGAG 57.331 33.333 29.41 10.83 0.00 3.86
182 183 7.425577 TGAATGAGTTGATTATCTTATGGCG 57.574 36.000 0.00 0.00 0.00 5.69
190 191 8.204836 AGTTGATTATCTTATGGCGTCTACTTT 58.795 33.333 0.00 0.00 0.00 2.66
218 219 5.862845 AGTCCTATTCCAGATGTGCAATAG 58.137 41.667 6.57 6.57 0.00 1.73
228 237 3.963374 AGATGTGCAATAGGCTCTCACTA 59.037 43.478 0.00 0.00 45.15 2.74
239 248 9.817809 CAATAGGCTCTCACTACTAATGTTAAA 57.182 33.333 0.00 0.00 0.00 1.52
313 322 8.648557 AAGAAAAATACAAAAGTTCCTTCTGC 57.351 30.769 0.00 0.00 0.00 4.26
332 341 1.084370 CCGTTCTTCACCGAGGATGC 61.084 60.000 0.00 0.00 0.00 3.91
356 365 7.280876 TGCTTGACTATTTTGGATGTGTCTATC 59.719 37.037 0.00 0.00 0.00 2.08
413 422 8.777865 TGATCTACTCTGAAAAATAACCACAG 57.222 34.615 0.00 0.00 0.00 3.66
420 429 7.607991 ACTCTGAAAAATAACCACAGACATAGG 59.392 37.037 0.00 0.00 34.58 2.57
453 462 6.150307 GGGTTGGCCAAACAAAATAAAATAGG 59.850 38.462 33.69 0.00 40.86 2.57
456 465 6.299141 TGGCCAAACAAAATAAAATAGGCAA 58.701 32.000 0.61 0.00 41.23 4.52
485 494 9.273016 GCTAGTTTAAAAGGCTACATCATCATA 57.727 33.333 0.00 0.00 0.00 2.15
500 509 8.627208 ACATCATCATAATCCACCTTAATGTC 57.373 34.615 0.00 0.00 0.00 3.06
510 519 3.689161 CCACCTTAATGTCGAGCATTGAA 59.311 43.478 17.82 10.34 46.40 2.69
516 525 6.907212 CCTTAATGTCGAGCATTGAATGTTAC 59.093 38.462 17.82 0.00 46.40 2.50
525 534 6.073765 CGAGCATTGAATGTTACCTATACACC 60.074 42.308 7.05 0.00 0.00 4.16
567 576 8.675705 TCTCATTTGTTTTCTCAACTGTATCA 57.324 30.769 0.00 0.00 32.43 2.15
610 619 4.770795 TCTTTAGCTAAGGGATGACAAGC 58.229 43.478 14.93 0.00 34.46 4.01
667 677 7.768807 ACTTAGTAAATATGTTGGTTGCCAA 57.231 32.000 0.00 0.00 41.69 4.52
674 684 9.030301 GTAAATATGTTGGTTGCCAATGATAAC 57.970 33.333 3.77 0.00 45.80 1.89
695 705 4.016444 ACAAAATACCGAGCCATGATGTT 58.984 39.130 0.00 0.00 0.00 2.71
700 710 1.012086 CCGAGCCATGATGTTGTGAG 58.988 55.000 0.00 0.00 0.00 3.51
723 733 8.778059 TGAGTACCTAATGGAATCACCTATTTT 58.222 33.333 0.00 0.00 39.86 1.82
732 742 6.129179 TGGAATCACCTATTTTCCTTGATCC 58.871 40.000 0.00 0.00 39.72 3.36
751 769 4.085357 TCCAGACATTGTTACAAGTGCT 57.915 40.909 3.63 0.00 0.00 4.40
772 794 1.067846 CCTCTTAAAGGCAAAACGGGC 60.068 52.381 0.00 0.00 38.67 6.13
796 818 7.618512 GGCTAGGGATGTAGTATTGGAATAGTA 59.381 40.741 0.00 0.00 0.00 1.82
797 819 9.203163 GCTAGGGATGTAGTATTGGAATAGTAT 57.797 37.037 0.00 0.00 31.47 2.12
865 887 6.558009 AGGTCGTTTCTTGTTTAGGTTTTTC 58.442 36.000 0.00 0.00 0.00 2.29
889 911 4.795278 CCGTTGATTCTGAAGCTATTTTGC 59.205 41.667 7.22 0.00 0.00 3.68
892 914 6.335777 GTTGATTCTGAAGCTATTTTGCCAT 58.664 36.000 7.22 0.00 0.00 4.40
928 950 7.701539 TTCTCAATGCAATACCATGTAGTTT 57.298 32.000 0.00 0.00 0.00 2.66
1028 1050 2.158608 CCTCTGACAACCCCAAGAAAGT 60.159 50.000 0.00 0.00 0.00 2.66
1087 1109 7.878127 TCTTCGACAAAGTTAAGGATTTCATCT 59.122 33.333 0.00 0.00 36.31 2.90
1088 1110 7.596749 TCGACAAAGTTAAGGATTTCATCTC 57.403 36.000 0.00 0.00 0.00 2.75
1113 1135 7.720957 TCAGACATTGGAGAAAAGATTGAAGAA 59.279 33.333 0.00 0.00 0.00 2.52
1194 1216 5.022787 AGTCTTGAGAAGGTAGAGCTCATT 58.977 41.667 17.77 4.83 38.35 2.57
1246 1268 1.141881 CCCATCCCTCTTGTCGACG 59.858 63.158 11.62 0.00 0.00 5.12
1291 1313 0.103937 GAGGAAGCTCATGTCCGGAG 59.896 60.000 3.06 0.00 39.06 4.63
1299 1321 1.224315 CATGTCCGGAGCAATCCCA 59.776 57.895 3.06 0.00 0.00 4.37
1443 1465 6.206634 TGGTCAAAGTTATTCTCCATGTTGAC 59.793 38.462 8.99 8.99 41.69 3.18
1444 1466 6.206634 GGTCAAAGTTATTCTCCATGTTGACA 59.793 38.462 15.83 0.00 43.32 3.58
1446 1468 8.946085 GTCAAAGTTATTCTCCATGTTGACATA 58.054 33.333 11.45 1.13 41.90 2.29
1448 1470 8.950210 CAAAGTTATTCTCCATGTTGACATACT 58.050 33.333 0.00 0.00 34.26 2.12
1497 1519 1.521681 GAAAGCCGGTGAGATCCCG 60.522 63.158 1.90 2.21 45.07 5.14
1515 1537 0.392998 CGGTGCCTTACAAGCCAGAT 60.393 55.000 0.00 0.00 0.00 2.90
1617 1639 0.898320 ATGACTTCGACCTGGGACTG 59.102 55.000 0.00 0.00 0.00 3.51
1719 1741 2.290323 GCAGGAAGTAACCACCATGACT 60.290 50.000 0.00 0.00 0.00 3.41
1862 1884 6.853490 TGAAGATACCTATTAGCAGAGAGGA 58.147 40.000 6.98 0.00 33.04 3.71
1898 1920 6.423302 CGACTAAAGAAGGAAGATGATGATGG 59.577 42.308 0.00 0.00 0.00 3.51
1951 1973 9.495754 GTTTCTATAGTGTTTCATCTGCAATTC 57.504 33.333 0.00 0.00 0.00 2.17
1954 1976 2.827921 AGTGTTTCATCTGCAATTCCCC 59.172 45.455 0.00 0.00 0.00 4.81
1963 1985 3.889815 TCTGCAATTCCCCTTAGACATG 58.110 45.455 0.00 0.00 0.00 3.21
2038 2060 4.096382 CACTTGTATCTTACCCATTGCCAC 59.904 45.833 0.00 0.00 0.00 5.01
2045 2067 4.532834 TCTTACCCATTGCCACTTTATCC 58.467 43.478 0.00 0.00 0.00 2.59
2082 2104 3.565307 AGAAATGCACTTTCCTGGAACA 58.435 40.909 9.04 4.21 43.66 3.18
2174 2209 3.679980 TCGCTGCTAACTGTGAGAATTTC 59.320 43.478 0.00 0.00 31.51 2.17
2214 2249 6.147581 GTGTAACACTTATCTCGTCTTGACA 58.852 40.000 1.59 0.00 36.32 3.58
2319 2361 6.066054 TCTCTACTATTGCTCTGACATTCG 57.934 41.667 0.00 0.00 0.00 3.34
2367 2410 0.035458 AAGAGTCCAAGCAACGAGGG 59.965 55.000 0.00 0.00 0.00 4.30
2392 2435 2.438254 TAAGGTGGCGCTGGCATG 60.438 61.111 7.64 0.00 40.92 4.06
2399 2442 2.501128 GCGCTGGCATGGAGTCTA 59.499 61.111 0.00 0.00 39.62 2.59
2400 2443 1.884926 GCGCTGGCATGGAGTCTAC 60.885 63.158 0.00 0.00 39.62 2.59
2401 2444 1.517361 CGCTGGCATGGAGTCTACA 59.483 57.895 0.00 0.00 0.00 2.74
2402 2445 0.108186 CGCTGGCATGGAGTCTACAA 60.108 55.000 0.00 0.00 0.00 2.41
2440 2494 1.280457 GGGTCACATCTCCAAGGTCT 58.720 55.000 0.00 0.00 0.00 3.85
2441 2495 2.225522 TGGGTCACATCTCCAAGGTCTA 60.226 50.000 0.00 0.00 0.00 2.59
2444 2498 3.462021 GTCACATCTCCAAGGTCTATGC 58.538 50.000 0.00 0.00 0.00 3.14
2468 2762 6.034044 GCGTATGCAGAAATATAGAGTAGCAC 59.966 42.308 0.89 0.00 42.15 4.40
2472 2766 7.054491 TGCAGAAATATAGAGTAGCACATGA 57.946 36.000 0.00 0.00 0.00 3.07
2473 2767 6.925718 TGCAGAAATATAGAGTAGCACATGAC 59.074 38.462 0.00 0.00 0.00 3.06
2495 2789 2.100216 GTGTGCCGCGGCTTATTG 59.900 61.111 45.79 12.08 42.51 1.90
2527 2821 6.651975 AAGTGCAAAGTCTACTAGTGTACT 57.348 37.500 5.39 5.89 38.08 2.73
2556 2851 7.385778 TCAATTTATTGTGGTAGCCTTGTAC 57.614 36.000 2.66 0.00 38.84 2.90
2574 2869 7.148623 GCCTTGTACTCTTGTGTAGATGTTTAC 60.149 40.741 0.00 0.00 30.92 2.01
2607 2902 6.990798 TCATCATAGATTGAGATGTCCTGTC 58.009 40.000 0.00 0.00 39.96 3.51
2627 2922 3.624861 GTCTGATGGCTTGTGTTCATAGG 59.375 47.826 0.00 0.00 0.00 2.57
2692 2987 0.889306 AAGTGTAGGTCGAGGACTGC 59.111 55.000 0.00 0.00 32.47 4.40
2749 3044 5.059404 AGTTTGTTATGCACATTAGTGGC 57.941 39.130 0.00 0.00 45.98 5.01
2765 3060 1.507562 TGGCACACAACATAGACACG 58.492 50.000 0.00 0.00 0.00 4.49
2770 3065 1.001633 ACACAACATAGACACGGGGAC 59.998 52.381 0.00 0.00 0.00 4.46
2809 3104 2.160813 AGAAAACACAACGCGACAAGTT 59.839 40.909 15.93 9.58 0.00 2.66
2885 3181 2.268920 GGCTGTGAAGGCGATGGA 59.731 61.111 0.00 0.00 0.00 3.41
2961 3261 0.476771 GGAGACGAGGGAGAGGAGAT 59.523 60.000 0.00 0.00 0.00 2.75
2964 3264 1.791103 GACGAGGGAGAGGAGATGCG 61.791 65.000 0.00 0.00 0.00 4.73
2971 3271 0.033228 GAGAGGAGATGCGATGGTGG 59.967 60.000 0.00 0.00 0.00 4.61
3045 3353 3.827898 CGAGACTCGGTCCCTGGC 61.828 72.222 17.27 0.00 36.00 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 8.707449 ACATGCCAGTTTCATATGGAATAATTT 58.293 29.630 0.00 0.00 39.02 1.82
8 9 6.363882 TGACATGCCAGTTTCATATGGAATA 58.636 36.000 0.00 0.00 39.02 1.75
18 19 4.022935 TGTCTCATTTGACATGCCAGTTTC 60.023 41.667 0.00 0.00 41.43 2.78
30 31 7.692460 ATAAAGTTCAGCATGTCTCATTTGA 57.308 32.000 0.00 0.00 37.40 2.69
56 57 7.697352 TTGCACAAACAACATCTGAATTAAG 57.303 32.000 0.00 0.00 0.00 1.85
97 98 7.880160 ACTTAGCTCCATGCATGTAAAATTA 57.120 32.000 24.58 7.25 45.94 1.40
182 183 9.406113 TCTGGAATAGGACTAGTAAAAGTAGAC 57.594 37.037 0.00 0.00 0.00 2.59
190 191 5.897250 TGCACATCTGGAATAGGACTAGTAA 59.103 40.000 0.00 0.00 0.00 2.24
218 219 8.422566 ACCTATTTAACATTAGTAGTGAGAGCC 58.577 37.037 0.00 0.00 0.00 4.70
311 320 1.541310 ATCCTCGGTGAAGAACGGCA 61.541 55.000 0.00 0.00 0.00 5.69
313 322 1.084370 GCATCCTCGGTGAAGAACGG 61.084 60.000 0.00 0.00 0.00 4.44
332 341 8.954950 AGATAGACACATCCAAAATAGTCAAG 57.045 34.615 0.00 0.00 0.00 3.02
399 408 9.974980 TTTTTCCTATGTCTGTGGTTATTTTTC 57.025 29.630 0.00 0.00 0.00 2.29
427 436 4.503714 TTTATTTTGTTTGGCCAACCCA 57.496 36.364 20.35 15.41 43.51 4.51
428 437 6.150307 CCTATTTTATTTTGTTTGGCCAACCC 59.850 38.462 20.35 12.67 33.97 4.11
453 462 4.521130 AGCCTTTTAAACTAGCCTTTGC 57.479 40.909 0.00 0.00 37.95 3.68
456 465 6.481643 TGATGTAGCCTTTTAAACTAGCCTT 58.518 36.000 0.00 0.00 0.00 4.35
471 480 5.171339 AGGTGGATTATGATGATGTAGCC 57.829 43.478 0.00 0.00 0.00 3.93
485 494 3.627395 TGCTCGACATTAAGGTGGATT 57.373 42.857 5.42 0.00 0.00 3.01
500 509 6.073765 GGTGTATAGGTAACATTCAATGCTCG 60.074 42.308 0.00 0.00 41.41 5.03
560 569 4.681942 GCGTGCTAGGATTAAGTGATACAG 59.318 45.833 0.00 0.00 0.00 2.74
564 573 2.224305 GGGCGTGCTAGGATTAAGTGAT 60.224 50.000 0.00 0.00 0.00 3.06
565 574 1.138266 GGGCGTGCTAGGATTAAGTGA 59.862 52.381 0.00 0.00 0.00 3.41
567 576 0.104304 CGGGCGTGCTAGGATTAAGT 59.896 55.000 0.00 0.00 0.00 2.24
573 582 1.823169 AAAGAACGGGCGTGCTAGGA 61.823 55.000 0.00 0.00 31.60 2.94
610 619 5.947228 AAATACAGATGATATGGCAACGG 57.053 39.130 0.00 0.00 42.51 4.44
644 653 8.465999 TCATTGGCAACCAACATATTTACTAAG 58.534 33.333 0.00 0.00 46.95 2.18
667 677 6.061441 TCATGGCTCGGTATTTTGTTATCAT 58.939 36.000 0.00 0.00 0.00 2.45
674 684 4.142403 ACAACATCATGGCTCGGTATTTTG 60.142 41.667 0.00 0.00 0.00 2.44
695 705 5.030147 AGGTGATTCCATTAGGTACTCACA 58.970 41.667 7.97 0.00 38.84 3.58
700 710 8.218488 AGGAAAATAGGTGATTCCATTAGGTAC 58.782 37.037 6.55 0.00 44.08 3.34
723 733 5.497464 TGTAACAATGTCTGGATCAAGGA 57.503 39.130 0.00 0.00 0.00 3.36
732 742 4.067896 AGGAGCACTTGTAACAATGTCTG 58.932 43.478 0.00 0.00 0.00 3.51
865 887 5.335127 CAAAATAGCTTCAGAATCAACGGG 58.665 41.667 0.00 0.00 0.00 5.28
904 926 7.701539 AAACTACATGGTATTGCATTGAGAA 57.298 32.000 0.00 0.00 0.00 2.87
1028 1050 3.394274 TCCTTCATCCTGGTCTTTGTCAA 59.606 43.478 0.00 0.00 0.00 3.18
1087 1109 7.226441 TCTTCAATCTTTTCTCCAATGTCTGA 58.774 34.615 0.00 0.00 0.00 3.27
1088 1110 7.444629 TCTTCAATCTTTTCTCCAATGTCTG 57.555 36.000 0.00 0.00 0.00 3.51
1137 1159 1.621317 TGGATTCCAGTAACGTCAGCA 59.379 47.619 0.00 0.00 0.00 4.41
1194 1216 4.458989 GGGTTTGTAATCAGAACATCAGCA 59.541 41.667 0.00 0.00 0.00 4.41
1246 1268 5.961395 TCGCTTTCAATAAGGTATTCGAC 57.039 39.130 0.00 0.00 0.00 4.20
1443 1465 3.761218 AGATCCTGCCGATGACTAGTATG 59.239 47.826 0.00 0.00 0.00 2.39
1444 1466 4.013728 GAGATCCTGCCGATGACTAGTAT 58.986 47.826 0.00 0.00 0.00 2.12
1446 1468 2.235016 GAGATCCTGCCGATGACTAGT 58.765 52.381 0.00 0.00 0.00 2.57
1448 1470 1.145945 AGGAGATCCTGCCGATGACTA 59.854 52.381 0.00 0.00 46.55 2.59
1515 1537 9.230122 TCAAACTTGATCTTGCTAATATCAACA 57.770 29.630 0.00 0.00 35.32 3.33
1617 1639 4.942483 CAGATCTCATAATCCAGGGCATTC 59.058 45.833 0.00 0.00 0.00 2.67
1692 1714 2.814336 GGTGGTTACTTCCTGCTTCTTG 59.186 50.000 0.00 0.00 0.00 3.02
1719 1741 1.308069 GCCTGAAGCTGATCGGCAAA 61.308 55.000 27.81 11.86 38.23 3.68
1862 1884 5.011738 TCCTTCTTTAGTCGAGTTGTTCCAT 59.988 40.000 0.00 0.00 0.00 3.41
1898 1920 6.783162 ACATAGTATACCTCATCGTTATCGC 58.217 40.000 0.00 0.00 36.96 4.58
1945 1967 2.378038 TGCATGTCTAAGGGGAATTGC 58.622 47.619 0.00 0.00 0.00 3.56
1951 1973 3.956199 ACATTTGATGCATGTCTAAGGGG 59.044 43.478 2.46 0.00 27.99 4.79
1954 1976 6.849502 AGTCAACATTTGATGCATGTCTAAG 58.150 36.000 2.46 0.00 42.47 2.18
1963 1985 9.793252 AGTATTTATCAAGTCAACATTTGATGC 57.207 29.630 9.33 0.00 42.35 3.91
2045 2067 7.869429 AGTGCATTTCTTCAATTTTTAGTCCTG 59.131 33.333 0.00 0.00 0.00 3.86
2201 2236 7.730364 AATACAAAAAGTGTCAAGACGAGAT 57.270 32.000 0.00 0.00 41.98 2.75
2239 2274 7.027874 ACATCTTAATTACTTCTTGACCCCA 57.972 36.000 0.00 0.00 0.00 4.96
2280 2315 6.679327 AGTAGAGAAACTCCAAACAACAAC 57.321 37.500 0.00 0.00 0.00 3.32
2319 2361 8.962884 AAGCAAATTGTTTTCCCCATATAATC 57.037 30.769 0.00 0.00 0.00 1.75
2367 2410 2.354821 CCAGCGCCACCTTAGTTATTTC 59.645 50.000 2.29 0.00 0.00 2.17
2420 2463 0.984230 GACCTTGGAGATGTGACCCA 59.016 55.000 0.00 0.00 0.00 4.51
2423 2477 3.462021 GCATAGACCTTGGAGATGTGAC 58.538 50.000 0.00 0.00 0.00 3.67
2444 2498 7.084486 TGTGCTACTCTATATTTCTGCATACG 58.916 38.462 0.00 0.00 0.00 3.06
2451 2505 9.486497 CAATGTCATGTGCTACTCTATATTTCT 57.514 33.333 0.00 0.00 0.00 2.52
2452 2506 8.715998 CCAATGTCATGTGCTACTCTATATTTC 58.284 37.037 0.00 0.00 0.00 2.17
2468 2762 1.153978 GCGGCACACCAATGTCATG 60.154 57.895 0.00 0.00 36.72 3.07
2495 2789 6.224584 AGTAGACTTTGCACTTTCTCTTACC 58.775 40.000 0.00 0.00 0.00 2.85
2527 2821 4.640201 GGCTACCACAATAAATTGAGCAGA 59.360 41.667 9.60 0.00 40.14 4.26
2556 2851 8.142994 ACTGTTTGTAAACATCTACACAAGAG 57.857 34.615 10.29 0.00 46.71 2.85
2607 2902 3.614092 ACCTATGAACACAAGCCATCAG 58.386 45.455 0.00 0.00 0.00 2.90
2646 2941 7.067494 GCATGTGTTGAGTATTCCCTTTTCTAT 59.933 37.037 0.00 0.00 0.00 1.98
2683 2978 3.064271 GTGAAGTCTAGTAGCAGTCCTCG 59.936 52.174 0.00 0.00 0.00 4.63
2692 2987 6.606234 TCGCATAGAAGTGAAGTCTAGTAG 57.394 41.667 0.00 0.00 31.27 2.57
2739 3034 4.695455 GTCTATGTTGTGTGCCACTAATGT 59.305 41.667 0.00 0.00 35.11 2.71
2749 3044 1.001520 TCCCCGTGTCTATGTTGTGTG 59.998 52.381 0.00 0.00 0.00 3.82
2765 3060 7.571025 TCTTTATAATGTGAAACTAGGTCCCC 58.429 38.462 0.00 0.00 38.04 4.81
2778 3073 6.575572 TCGCGTTGTGTTTTCTTTATAATGTG 59.424 34.615 5.77 0.00 0.00 3.21
2799 3094 1.082756 GAAGGCACAACTTGTCGCG 60.083 57.895 0.00 0.00 33.71 5.87
2809 3104 1.203313 AGGAGTAGAAGGGAAGGCACA 60.203 52.381 0.00 0.00 0.00 4.57
2857 3153 2.359602 CACAGCCCTGCAGGTCAG 60.360 66.667 30.63 18.54 42.49 3.51
2921 3220 4.479993 GCAGCTCGCATCCCCTGT 62.480 66.667 3.64 0.00 41.79 4.00
2935 3234 3.522731 CCCTCGTCTCCTCCGCAG 61.523 72.222 0.00 0.00 0.00 5.18
2964 3264 3.818787 CAAGCCTGCGCCACCATC 61.819 66.667 4.18 0.00 34.57 3.51
3015 3315 0.747255 AGTCTCGATTGCGCCACTAT 59.253 50.000 4.18 0.00 37.46 2.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.