Multiple sequence alignment - TraesCS3A01G091400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G091400 chr3A 100.000 4865 0 0 1 4865 57859791 57854927 0.000000e+00 8985.0
1 TraesCS3A01G091400 chr3A 87.230 556 39 14 4337 4865 732359354 732359904 5.390000e-169 604.0
2 TraesCS3A01G091400 chr3A 92.661 327 21 3 4133 4457 732359091 732359416 7.370000e-128 468.0
3 TraesCS3A01G091400 chr3A 86.111 108 12 3 4341 4447 732359388 732359493 3.980000e-21 113.0
4 TraesCS3A01G091400 chr3B 95.139 3065 99 24 932 3971 72317404 72314365 0.000000e+00 4789.0
5 TraesCS3A01G091400 chr3B 93.443 427 25 1 3458 3884 72237836 72237413 8.890000e-177 630.0
6 TraesCS3A01G091400 chr3B 79.856 278 30 12 3877 4136 72232942 72232673 3.870000e-41 180.0
7 TraesCS3A01G091400 chr3B 93.182 88 5 1 3970 4057 72314328 72314242 1.420000e-25 128.0
8 TraesCS3A01G091400 chr3B 95.775 71 3 0 4070 4140 72314147 72314077 1.110000e-21 115.0
9 TraesCS3A01G091400 chr3B 96.296 54 2 0 3406 3459 72238896 72238843 6.710000e-14 89.8
10 TraesCS3A01G091400 chr3D 96.574 2131 59 5 932 3049 46249185 46247056 0.000000e+00 3518.0
11 TraesCS3A01G091400 chr3D 90.673 1040 50 24 3129 4137 46247056 46246033 0.000000e+00 1339.0
12 TraesCS3A01G091400 chr3D 81.701 776 82 29 7 746 46249942 46249191 4.190000e-165 592.0
13 TraesCS3A01G091400 chr3D 85.586 222 22 6 4653 4865 128554466 128554246 1.760000e-54 224.0
14 TraesCS3A01G091400 chr4B 85.461 791 52 21 4135 4865 348943586 348944373 0.000000e+00 765.0
15 TraesCS3A01G091400 chr1A 85.765 562 42 16 4337 4865 125992847 125992291 1.180000e-155 560.0
16 TraesCS3A01G091400 chr1A 89.412 340 33 3 4137 4474 125993106 125992768 4.500000e-115 425.0
17 TraesCS3A01G091400 chr1A 96.380 221 1 1 4646 4859 108759465 108759685 1.670000e-94 357.0
18 TraesCS3A01G091400 chr1A 99.145 117 1 0 4138 4254 108758391 108758507 1.370000e-50 211.0
19 TraesCS3A01G091400 chr1A 93.243 74 2 1 4573 4646 108759371 108759441 6.660000e-19 106.0
20 TraesCS3A01G091400 chr1B 81.283 374 36 18 4522 4865 529425764 529426133 6.200000e-69 272.0
21 TraesCS3A01G091400 chr1B 86.585 164 18 3 4177 4339 529397785 529397945 1.390000e-40 178.0
22 TraesCS3A01G091400 chr1B 88.525 61 7 0 4343 4403 529425563 529425623 1.880000e-09 75.0
23 TraesCS3A01G091400 chr2B 84.375 224 30 5 4646 4865 546870439 546870217 1.060000e-51 215.0
24 TraesCS3A01G091400 chr2A 77.812 329 57 8 4237 4562 419220844 419221159 6.430000e-44 189.0
25 TraesCS3A01G091400 chr1D 76.087 230 35 17 4646 4863 22072542 22072321 8.610000e-18 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G091400 chr3A 57854927 57859791 4864 True 8985.000000 8985 100.000000 1 4865 1 chr3A.!!$R1 4864
1 TraesCS3A01G091400 chr3A 732359091 732359904 813 False 395.000000 604 88.667333 4133 4865 3 chr3A.!!$F1 732
2 TraesCS3A01G091400 chr3B 72314077 72317404 3327 True 1677.333333 4789 94.698667 932 4140 3 chr3B.!!$R3 3208
3 TraesCS3A01G091400 chr3B 72237413 72238896 1483 True 359.900000 630 94.869500 3406 3884 2 chr3B.!!$R2 478
4 TraesCS3A01G091400 chr3D 46246033 46249942 3909 True 1816.333333 3518 89.649333 7 4137 3 chr3D.!!$R2 4130
5 TraesCS3A01G091400 chr4B 348943586 348944373 787 False 765.000000 765 85.461000 4135 4865 1 chr4B.!!$F1 730
6 TraesCS3A01G091400 chr1A 125992291 125993106 815 True 492.500000 560 87.588500 4137 4865 2 chr1A.!!$R1 728
7 TraesCS3A01G091400 chr1A 108758391 108759685 1294 False 224.666667 357 96.256000 4138 4859 3 chr1A.!!$F1 721

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
401 426 0.176680 CCTCTGTATCAAGCTGCGGT 59.823 55.0 0.00 0.00 0.00 5.68 F
700 735 0.179084 TTTTAGATGAGAGCGGCCGG 60.179 55.0 29.38 8.95 0.00 6.13 F
1358 1400 0.248621 GTTGCTATCATTGGCCGCAC 60.249 55.0 0.00 0.00 0.00 5.34 F
1458 1506 0.249031 TGCATCCGTCTGTCTATGCG 60.249 55.0 0.00 0.00 46.04 4.73 F
2836 2892 0.598065 ATTTTTCACTCGGTGCAGGC 59.402 50.0 0.00 0.00 32.98 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2025 2073 0.321671 TGCTCCACTAAGGACTGCAC 59.678 55.0 0.00 0.0 41.24 4.57 R
2137 2185 0.539051 CAGAGGGTGGAGACCATGAC 59.461 60.0 0.00 0.0 45.25 3.06 R
3106 3163 0.517316 GCAAAGCAACTAGGGTGTCG 59.483 55.0 0.00 0.0 0.00 4.35 R
3140 3197 1.365293 AAACTTAAGTAGCCCCCGGT 58.635 50.0 8.92 0.0 0.00 5.28 R
3962 5036 0.389948 AGGTTTTGTAGCTCGGCTCG 60.390 55.0 1.46 0.0 40.44 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.331954 GTCTTCCCCTTTCCCCCTTC 59.668 60.000 0.00 0.00 0.00 3.46
20 21 0.849540 TCTTCCCCTTTCCCCCTTCC 60.850 60.000 0.00 0.00 0.00 3.46
21 22 2.211468 CTTCCCCTTTCCCCCTTCCG 62.211 65.000 0.00 0.00 0.00 4.30
24 25 2.675371 CCTTTCCCCCTTCCGTCC 59.325 66.667 0.00 0.00 0.00 4.79
25 26 1.923909 CCTTTCCCCCTTCCGTCCT 60.924 63.158 0.00 0.00 0.00 3.85
39 40 0.537653 CGTCCTTCTCTTCTTCCCCC 59.462 60.000 0.00 0.00 0.00 5.40
72 73 1.617839 CCCAGCTTCTTCCCCCTCT 60.618 63.158 0.00 0.00 0.00 3.69
73 74 1.210885 CCCAGCTTCTTCCCCCTCTT 61.211 60.000 0.00 0.00 0.00 2.85
74 75 0.254462 CCAGCTTCTTCCCCCTCTTC 59.746 60.000 0.00 0.00 0.00 2.87
81 82 0.470341 CTTCCCCCTCTTCCGATTCC 59.530 60.000 0.00 0.00 0.00 3.01
88 89 1.335496 CCTCTTCCGATTCCTCGTCTC 59.665 57.143 0.00 0.00 43.49 3.36
93 94 2.482333 CGATTCCTCGTCTCCGGCT 61.482 63.158 0.00 0.00 40.07 5.52
102 103 4.087892 TCTCCGGCTTGCCTGCTC 62.088 66.667 10.12 0.00 0.00 4.26
109 110 1.299321 GCTTGCCTGCTCTTCCTCT 59.701 57.895 0.00 0.00 0.00 3.69
110 111 0.744057 GCTTGCCTGCTCTTCCTCTC 60.744 60.000 0.00 0.00 0.00 3.20
111 112 0.459934 CTTGCCTGCTCTTCCTCTCG 60.460 60.000 0.00 0.00 0.00 4.04
112 113 2.202864 GCCTGCTCTTCCTCTCGC 60.203 66.667 0.00 0.00 0.00 5.03
113 114 2.720134 GCCTGCTCTTCCTCTCGCT 61.720 63.158 0.00 0.00 0.00 4.93
114 115 1.437160 CCTGCTCTTCCTCTCGCTC 59.563 63.158 0.00 0.00 0.00 5.03
116 117 2.335052 CTGCTCTTCCTCTCGCTCCG 62.335 65.000 0.00 0.00 0.00 4.63
117 118 3.115556 CTCTTCCTCTCGCTCCGG 58.884 66.667 0.00 0.00 0.00 5.14
119 120 3.144193 CTTCCTCTCGCTCCGGCT 61.144 66.667 0.00 0.00 36.09 5.52
120 121 3.132481 CTTCCTCTCGCTCCGGCTC 62.132 68.421 0.00 0.00 36.09 4.70
121 122 3.646942 TTCCTCTCGCTCCGGCTCT 62.647 63.158 0.00 0.00 36.09 4.09
122 123 3.591835 CCTCTCGCTCCGGCTCTC 61.592 72.222 0.00 0.00 36.09 3.20
123 124 3.591835 CTCTCGCTCCGGCTCTCC 61.592 72.222 0.00 0.00 36.09 3.71
162 163 2.445845 CGCCCTCCATCCCTGGTA 60.446 66.667 0.00 0.00 43.61 3.25
163 164 1.843376 CGCCCTCCATCCCTGGTAT 60.843 63.158 0.00 0.00 43.61 2.73
171 172 0.758734 CATCCCTGGTATCTTCCGCA 59.241 55.000 0.00 0.00 0.00 5.69
226 235 2.614734 GGGGTTCTTTCTAGGGTTCGTG 60.615 54.545 0.00 0.00 0.00 4.35
229 238 3.244318 GGTTCTTTCTAGGGTTCGTGGAA 60.244 47.826 0.00 0.00 0.00 3.53
261 270 2.195922 ACGTTATCGGTAAATCACGGC 58.804 47.619 3.02 0.00 41.85 5.68
268 277 1.741055 CGGTAAATCACGGCAGCCTAA 60.741 52.381 10.54 0.00 0.00 2.69
271 280 3.003378 GGTAAATCACGGCAGCCTAAATC 59.997 47.826 10.54 0.00 0.00 2.17
274 283 2.418368 TCACGGCAGCCTAAATCAAT 57.582 45.000 10.54 0.00 0.00 2.57
277 286 3.876914 TCACGGCAGCCTAAATCAATAAG 59.123 43.478 10.54 0.00 0.00 1.73
303 312 3.846360 CTGGTACGAATCGAGTTCCTTT 58.154 45.455 10.55 0.00 33.04 3.11
321 343 2.529780 TTTGCTCATGCCTGTTTTGG 57.470 45.000 0.00 0.00 38.71 3.28
335 357 3.491342 TGTTTTGGCATAGTAGTTGGCA 58.509 40.909 0.00 0.00 46.51 4.92
358 383 2.096614 CAGCCGTACAAACTACAAACCG 60.097 50.000 0.00 0.00 0.00 4.44
377 402 4.969484 ACCGTTGTCCTTTCTGTCTTTAT 58.031 39.130 0.00 0.00 0.00 1.40
393 418 8.981659 TCTGTCTTTATTCATCCTCTGTATCAA 58.018 33.333 0.00 0.00 0.00 2.57
394 419 9.258826 CTGTCTTTATTCATCCTCTGTATCAAG 57.741 37.037 0.00 0.00 0.00 3.02
395 420 7.712639 TGTCTTTATTCATCCTCTGTATCAAGC 59.287 37.037 0.00 0.00 0.00 4.01
396 421 7.930865 GTCTTTATTCATCCTCTGTATCAAGCT 59.069 37.037 0.00 0.00 0.00 3.74
397 422 7.930325 TCTTTATTCATCCTCTGTATCAAGCTG 59.070 37.037 0.00 0.00 0.00 4.24
398 423 3.465742 TCATCCTCTGTATCAAGCTGC 57.534 47.619 0.00 0.00 0.00 5.25
400 425 0.461548 TCCTCTGTATCAAGCTGCGG 59.538 55.000 0.00 0.00 0.00 5.69
401 426 0.176680 CCTCTGTATCAAGCTGCGGT 59.823 55.000 0.00 0.00 0.00 5.68
402 427 1.409064 CCTCTGTATCAAGCTGCGGTA 59.591 52.381 0.00 0.00 0.00 4.02
403 428 2.544694 CCTCTGTATCAAGCTGCGGTAG 60.545 54.545 0.00 0.00 0.00 3.18
414 444 1.137479 GCTGCGGTAGTTGGGTACATA 59.863 52.381 0.00 0.00 0.00 2.29
416 446 2.166870 CTGCGGTAGTTGGGTACATACA 59.833 50.000 0.00 0.00 0.00 2.29
419 449 3.181473 GCGGTAGTTGGGTACATACATCA 60.181 47.826 0.00 0.00 0.00 3.07
422 452 5.114081 GGTAGTTGGGTACATACATCACAC 58.886 45.833 0.00 0.00 0.00 3.82
426 456 4.736126 TGGGTACATACATCACACTGAG 57.264 45.455 0.00 0.00 0.00 3.35
445 475 3.987954 ATTTCCGGCGGCGATGGTT 62.988 57.895 34.49 10.44 0.00 3.67
454 484 3.195698 GCGATGGTTGTCGGAGGC 61.196 66.667 0.00 0.00 41.72 4.70
483 513 8.087982 TGTTTTGTCTCTAGAGTTATGCTTTG 57.912 34.615 19.21 0.00 0.00 2.77
485 515 8.940952 GTTTTGTCTCTAGAGTTATGCTTTGAT 58.059 33.333 19.21 0.00 0.00 2.57
492 522 7.923888 TCTAGAGTTATGCTTTGATCAATTGC 58.076 34.615 20.38 20.38 0.00 3.56
507 537 2.088950 ATTGCTGCCAATCTTGTTGC 57.911 45.000 0.00 0.00 37.04 4.17
520 550 1.802365 CTTGTTGCCCAACCGTACTAC 59.198 52.381 8.53 0.00 40.46 2.73
521 551 1.050204 TGTTGCCCAACCGTACTACT 58.950 50.000 8.53 0.00 40.46 2.57
522 552 2.246469 TGTTGCCCAACCGTACTACTA 58.754 47.619 8.53 0.00 40.46 1.82
532 562 6.016777 CCCAACCGTACTACTAGTTATGGTAG 60.017 46.154 15.77 11.48 43.99 3.18
542 572 5.535029 ACTAGTTATGGTAGATTGGGTGGA 58.465 41.667 0.00 0.00 0.00 4.02
543 573 4.772886 AGTTATGGTAGATTGGGTGGAC 57.227 45.455 0.00 0.00 0.00 4.02
564 594 4.606210 ACCCAGTACAACCTTGTTCTTTT 58.394 39.130 0.00 0.00 42.35 2.27
566 596 4.359706 CCAGTACAACCTTGTTCTTTTGC 58.640 43.478 0.00 0.00 42.35 3.68
574 604 6.534793 ACAACCTTGTTCTTTTGCAATAACTG 59.465 34.615 16.22 10.55 38.47 3.16
577 607 6.322712 ACCTTGTTCTTTTGCAATAACTGGTA 59.677 34.615 21.47 0.00 31.45 3.25
579 609 7.708752 CCTTGTTCTTTTGCAATAACTGGTAAA 59.291 33.333 16.22 5.82 0.00 2.01
581 611 9.606631 TTGTTCTTTTGCAATAACTGGTAAATT 57.393 25.926 16.22 0.00 0.00 1.82
638 668 9.256228 AGGTGATACTAATTGAGTCTTTCACTA 57.744 33.333 9.79 0.00 39.87 2.74
639 669 9.303537 GGTGATACTAATTGAGTCTTTCACTAC 57.696 37.037 9.79 0.00 39.87 2.73
655 690 1.279271 ACTACTGCCCTGTGTGGAATC 59.721 52.381 0.00 0.00 38.35 2.52
656 691 1.278985 CTACTGCCCTGTGTGGAATCA 59.721 52.381 0.00 0.00 38.35 2.57
667 702 1.888512 TGTGGAATCAAAAGCTGGCTC 59.111 47.619 0.00 0.00 0.00 4.70
692 727 6.484288 TGCCCAAGAAAGATTTTAGATGAGA 58.516 36.000 0.00 0.00 0.00 3.27
695 730 6.238320 CCCAAGAAAGATTTTAGATGAGAGCG 60.238 42.308 0.00 0.00 0.00 5.03
699 734 1.795286 GATTTTAGATGAGAGCGGCCG 59.205 52.381 24.05 24.05 0.00 6.13
700 735 0.179084 TTTTAGATGAGAGCGGCCGG 60.179 55.000 29.38 8.95 0.00 6.13
701 736 1.040893 TTTAGATGAGAGCGGCCGGA 61.041 55.000 29.38 0.00 0.00 5.14
709 744 4.699522 AGCGGCCGGACAACCTTC 62.700 66.667 29.38 6.37 0.00 3.46
718 753 0.526211 GGACAACCTTCGCCCATTTC 59.474 55.000 0.00 0.00 0.00 2.17
719 754 1.243902 GACAACCTTCGCCCATTTCA 58.756 50.000 0.00 0.00 0.00 2.69
720 755 1.611491 GACAACCTTCGCCCATTTCAA 59.389 47.619 0.00 0.00 0.00 2.69
721 756 1.613437 ACAACCTTCGCCCATTTCAAG 59.387 47.619 0.00 0.00 0.00 3.02
722 757 1.613437 CAACCTTCGCCCATTTCAAGT 59.387 47.619 0.00 0.00 0.00 3.16
723 758 2.817258 CAACCTTCGCCCATTTCAAGTA 59.183 45.455 0.00 0.00 0.00 2.24
727 762 3.621715 CCTTCGCCCATTTCAAGTACTAC 59.378 47.826 0.00 0.00 0.00 2.73
751 786 3.614399 GCAGTAGCACCTGTCAAGT 57.386 52.632 4.79 0.00 41.58 3.16
752 787 1.433534 GCAGTAGCACCTGTCAAGTC 58.566 55.000 4.79 0.00 41.58 3.01
753 788 1.270305 GCAGTAGCACCTGTCAAGTCA 60.270 52.381 4.79 0.00 41.58 3.41
754 789 2.613977 GCAGTAGCACCTGTCAAGTCAT 60.614 50.000 4.79 0.00 41.58 3.06
755 790 3.368427 GCAGTAGCACCTGTCAAGTCATA 60.368 47.826 4.79 0.00 41.58 2.15
756 791 4.681781 GCAGTAGCACCTGTCAAGTCATAT 60.682 45.833 4.79 0.00 41.58 1.78
757 792 5.451937 GCAGTAGCACCTGTCAAGTCATATA 60.452 44.000 4.79 0.00 41.58 0.86
758 793 6.739843 GCAGTAGCACCTGTCAAGTCATATAT 60.740 42.308 4.79 0.00 41.58 0.86
759 794 6.644181 CAGTAGCACCTGTCAAGTCATATATG 59.356 42.308 6.36 6.36 0.00 1.78
760 795 5.876651 AGCACCTGTCAAGTCATATATGA 57.123 39.130 11.49 11.49 0.00 2.15
798 833 9.726438 AGTTATATAATAATGACTTGCCTCACC 57.274 33.333 0.00 0.00 0.00 4.02
799 834 8.947115 GTTATATAATAATGACTTGCCTCACCC 58.053 37.037 0.00 0.00 0.00 4.61
800 835 2.736670 ATAATGACTTGCCTCACCCC 57.263 50.000 0.00 0.00 0.00 4.95
801 836 0.623723 TAATGACTTGCCTCACCCCC 59.376 55.000 0.00 0.00 0.00 5.40
802 837 1.142688 AATGACTTGCCTCACCCCCT 61.143 55.000 0.00 0.00 0.00 4.79
803 838 1.566298 ATGACTTGCCTCACCCCCTC 61.566 60.000 0.00 0.00 0.00 4.30
804 839 1.920835 GACTTGCCTCACCCCCTCT 60.921 63.158 0.00 0.00 0.00 3.69
805 840 1.464198 ACTTGCCTCACCCCCTCTT 60.464 57.895 0.00 0.00 0.00 2.85
806 841 1.068352 ACTTGCCTCACCCCCTCTTT 61.068 55.000 0.00 0.00 0.00 2.52
807 842 0.610232 CTTGCCTCACCCCCTCTTTG 60.610 60.000 0.00 0.00 0.00 2.77
808 843 1.065410 TTGCCTCACCCCCTCTTTGA 61.065 55.000 0.00 0.00 0.00 2.69
809 844 1.065410 TGCCTCACCCCCTCTTTGAA 61.065 55.000 0.00 0.00 0.00 2.69
810 845 0.332972 GCCTCACCCCCTCTTTGAAT 59.667 55.000 0.00 0.00 0.00 2.57
811 846 1.683319 GCCTCACCCCCTCTTTGAATC 60.683 57.143 0.00 0.00 0.00 2.52
812 847 1.918957 CCTCACCCCCTCTTTGAATCT 59.081 52.381 0.00 0.00 0.00 2.40
813 848 3.115390 CCTCACCCCCTCTTTGAATCTA 58.885 50.000 0.00 0.00 0.00 1.98
814 849 3.118223 CCTCACCCCCTCTTTGAATCTAC 60.118 52.174 0.00 0.00 0.00 2.59
815 850 3.777522 CTCACCCCCTCTTTGAATCTACT 59.222 47.826 0.00 0.00 0.00 2.57
816 851 3.775316 TCACCCCCTCTTTGAATCTACTC 59.225 47.826 0.00 0.00 0.00 2.59
817 852 3.116174 ACCCCCTCTTTGAATCTACTCC 58.884 50.000 0.00 0.00 0.00 3.85
818 853 2.439880 CCCCCTCTTTGAATCTACTCCC 59.560 54.545 0.00 0.00 0.00 4.30
819 854 3.388913 CCCCTCTTTGAATCTACTCCCT 58.611 50.000 0.00 0.00 0.00 4.20
820 855 3.389656 CCCCTCTTTGAATCTACTCCCTC 59.610 52.174 0.00 0.00 0.00 4.30
821 856 4.294347 CCCTCTTTGAATCTACTCCCTCT 58.706 47.826 0.00 0.00 0.00 3.69
822 857 4.100808 CCCTCTTTGAATCTACTCCCTCTG 59.899 50.000 0.00 0.00 0.00 3.35
823 858 4.714308 CCTCTTTGAATCTACTCCCTCTGT 59.286 45.833 0.00 0.00 0.00 3.41
824 859 5.188751 CCTCTTTGAATCTACTCCCTCTGTT 59.811 44.000 0.00 0.00 0.00 3.16
825 860 6.287589 TCTTTGAATCTACTCCCTCTGTTC 57.712 41.667 0.00 0.00 0.00 3.18
826 861 5.780282 TCTTTGAATCTACTCCCTCTGTTCA 59.220 40.000 0.00 0.00 0.00 3.18
827 862 5.407407 TTGAATCTACTCCCTCTGTTCAC 57.593 43.478 0.00 0.00 0.00 3.18
828 863 4.416516 TGAATCTACTCCCTCTGTTCACA 58.583 43.478 0.00 0.00 0.00 3.58
829 864 4.838423 TGAATCTACTCCCTCTGTTCACAA 59.162 41.667 0.00 0.00 0.00 3.33
830 865 5.485353 TGAATCTACTCCCTCTGTTCACAAT 59.515 40.000 0.00 0.00 0.00 2.71
831 866 6.013379 TGAATCTACTCCCTCTGTTCACAATT 60.013 38.462 0.00 0.00 0.00 2.32
832 867 5.152623 TCTACTCCCTCTGTTCACAATTG 57.847 43.478 3.24 3.24 0.00 2.32
833 868 3.864789 ACTCCCTCTGTTCACAATTGT 57.135 42.857 4.92 4.92 0.00 2.71
834 869 4.974645 ACTCCCTCTGTTCACAATTGTA 57.025 40.909 11.53 0.00 0.00 2.41
835 870 5.304686 ACTCCCTCTGTTCACAATTGTAA 57.695 39.130 11.53 0.00 0.00 2.41
836 871 5.308825 ACTCCCTCTGTTCACAATTGTAAG 58.691 41.667 11.53 7.05 0.00 2.34
837 872 5.071788 ACTCCCTCTGTTCACAATTGTAAGA 59.928 40.000 11.53 10.76 0.00 2.10
838 873 5.305585 TCCCTCTGTTCACAATTGTAAGAC 58.694 41.667 11.53 10.47 0.00 3.01
839 874 4.152402 CCCTCTGTTCACAATTGTAAGACG 59.848 45.833 11.53 0.00 0.00 4.18
840 875 4.988540 CCTCTGTTCACAATTGTAAGACGA 59.011 41.667 11.53 0.74 0.00 4.20
841 876 5.639506 CCTCTGTTCACAATTGTAAGACGAT 59.360 40.000 11.53 0.00 0.00 3.73
842 877 6.147821 CCTCTGTTCACAATTGTAAGACGATT 59.852 38.462 11.53 0.00 32.57 3.34
843 878 7.307989 CCTCTGTTCACAATTGTAAGACGATTT 60.308 37.037 11.53 0.00 29.99 2.17
844 879 7.351981 TCTGTTCACAATTGTAAGACGATTTG 58.648 34.615 11.53 0.00 29.99 2.32
845 880 6.434596 TGTTCACAATTGTAAGACGATTTGG 58.565 36.000 11.53 0.00 29.99 3.28
846 881 5.041951 TCACAATTGTAAGACGATTTGGC 57.958 39.130 11.53 0.00 29.99 4.52
847 882 4.517075 TCACAATTGTAAGACGATTTGGCA 59.483 37.500 11.53 0.00 29.99 4.92
848 883 4.853196 CACAATTGTAAGACGATTTGGCAG 59.147 41.667 11.53 0.00 29.99 4.85
849 884 4.518970 ACAATTGTAAGACGATTTGGCAGT 59.481 37.500 9.97 0.00 29.99 4.40
850 885 5.009610 ACAATTGTAAGACGATTTGGCAGTT 59.990 36.000 9.97 0.00 29.99 3.16
851 886 5.705609 ATTGTAAGACGATTTGGCAGTTT 57.294 34.783 0.00 0.00 0.00 2.66
852 887 6.811253 ATTGTAAGACGATTTGGCAGTTTA 57.189 33.333 0.00 0.00 0.00 2.01
853 888 6.621316 TTGTAAGACGATTTGGCAGTTTAA 57.379 33.333 0.00 0.00 0.00 1.52
854 889 6.811253 TGTAAGACGATTTGGCAGTTTAAT 57.189 33.333 0.00 0.00 0.00 1.40
855 890 7.209471 TGTAAGACGATTTGGCAGTTTAATT 57.791 32.000 0.00 0.00 0.00 1.40
856 891 7.653647 TGTAAGACGATTTGGCAGTTTAATTT 58.346 30.769 0.00 0.00 0.00 1.82
857 892 8.784994 TGTAAGACGATTTGGCAGTTTAATTTA 58.215 29.630 0.00 0.00 0.00 1.40
858 893 9.615295 GTAAGACGATTTGGCAGTTTAATTTAA 57.385 29.630 0.00 0.00 0.00 1.52
860 895 8.515473 AGACGATTTGGCAGTTTAATTTAAAC 57.485 30.769 19.74 19.74 46.36 2.01
873 908 8.515473 GTTTAATTTAAACTGCCGAAATGTCT 57.485 30.769 19.96 0.00 43.50 3.41
874 909 8.974408 GTTTAATTTAAACTGCCGAAATGTCTT 58.026 29.630 19.96 0.00 43.50 3.01
876 911 9.615295 TTAATTTAAACTGCCGAAATGTCTTAC 57.385 29.630 0.00 0.00 0.00 2.34
877 912 6.621316 TTTAAACTGCCGAAATGTCTTACA 57.379 33.333 0.00 0.00 0.00 2.41
878 913 6.811253 TTAAACTGCCGAAATGTCTTACAT 57.189 33.333 0.00 0.00 41.31 2.29
879 914 4.946784 AACTGCCGAAATGTCTTACATC 57.053 40.909 0.00 0.00 37.97 3.06
880 915 4.207891 ACTGCCGAAATGTCTTACATCT 57.792 40.909 0.00 0.00 37.97 2.90
881 916 3.935203 ACTGCCGAAATGTCTTACATCTG 59.065 43.478 0.00 0.00 37.97 2.90
882 917 3.935203 CTGCCGAAATGTCTTACATCTGT 59.065 43.478 0.00 0.00 37.97 3.41
883 918 3.684305 TGCCGAAATGTCTTACATCTGTG 59.316 43.478 0.00 0.00 37.97 3.66
884 919 3.932710 GCCGAAATGTCTTACATCTGTGA 59.067 43.478 0.00 0.00 37.97 3.58
885 920 4.391830 GCCGAAATGTCTTACATCTGTGAA 59.608 41.667 0.00 0.00 37.97 3.18
886 921 5.671329 GCCGAAATGTCTTACATCTGTGAAC 60.671 44.000 0.00 0.00 37.97 3.18
887 922 5.444613 CCGAAATGTCTTACATCTGTGAACG 60.445 44.000 0.00 0.00 37.97 3.95
888 923 5.344933 CGAAATGTCTTACATCTGTGAACGA 59.655 40.000 0.00 0.00 37.97 3.85
889 924 6.453003 CGAAATGTCTTACATCTGTGAACGAG 60.453 42.308 0.00 0.00 37.97 4.18
890 925 4.174411 TGTCTTACATCTGTGAACGAGG 57.826 45.455 0.00 0.00 0.00 4.63
891 926 3.056821 TGTCTTACATCTGTGAACGAGGG 60.057 47.826 0.00 0.00 0.00 4.30
892 927 3.192844 GTCTTACATCTGTGAACGAGGGA 59.807 47.826 0.00 0.00 0.00 4.20
893 928 3.444034 TCTTACATCTGTGAACGAGGGAG 59.556 47.826 0.00 0.00 0.00 4.30
894 929 1.633774 ACATCTGTGAACGAGGGAGT 58.366 50.000 0.00 0.00 0.00 3.85
895 930 2.803956 ACATCTGTGAACGAGGGAGTA 58.196 47.619 0.00 0.00 0.00 2.59
896 931 2.755655 ACATCTGTGAACGAGGGAGTAG 59.244 50.000 0.00 0.00 0.00 2.57
897 932 1.174783 TCTGTGAACGAGGGAGTAGC 58.825 55.000 0.00 0.00 0.00 3.58
898 933 0.888619 CTGTGAACGAGGGAGTAGCA 59.111 55.000 0.00 0.00 0.00 3.49
899 934 1.272490 CTGTGAACGAGGGAGTAGCAA 59.728 52.381 0.00 0.00 0.00 3.91
900 935 1.000506 TGTGAACGAGGGAGTAGCAAC 59.999 52.381 0.00 0.00 0.00 4.17
901 936 1.272769 GTGAACGAGGGAGTAGCAACT 59.727 52.381 0.00 0.00 39.21 3.16
902 937 1.968493 TGAACGAGGGAGTAGCAACTT 59.032 47.619 0.00 0.00 35.56 2.66
903 938 3.057033 GTGAACGAGGGAGTAGCAACTTA 60.057 47.826 0.00 0.00 35.56 2.24
904 939 3.057033 TGAACGAGGGAGTAGCAACTTAC 60.057 47.826 0.00 0.00 35.56 2.34
905 940 1.823610 ACGAGGGAGTAGCAACTTACC 59.176 52.381 0.00 0.00 35.56 2.85
906 941 2.100989 CGAGGGAGTAGCAACTTACCT 58.899 52.381 3.32 3.32 42.67 3.08
907 942 2.159226 CGAGGGAGTAGCAACTTACCTG 60.159 54.545 7.26 0.00 41.08 4.00
908 943 2.832733 GAGGGAGTAGCAACTTACCTGT 59.167 50.000 7.26 0.00 41.08 4.00
909 944 4.021916 GAGGGAGTAGCAACTTACCTGTA 58.978 47.826 7.26 0.00 41.08 2.74
910 945 4.422984 AGGGAGTAGCAACTTACCTGTAA 58.577 43.478 2.98 0.00 40.13 2.41
911 946 5.030820 AGGGAGTAGCAACTTACCTGTAAT 58.969 41.667 2.98 0.00 40.13 1.89
912 947 5.487845 AGGGAGTAGCAACTTACCTGTAATT 59.512 40.000 2.98 0.00 40.13 1.40
913 948 6.670902 AGGGAGTAGCAACTTACCTGTAATTA 59.329 38.462 2.98 0.00 40.13 1.40
914 949 7.347485 AGGGAGTAGCAACTTACCTGTAATTAT 59.653 37.037 0.00 0.00 40.13 1.28
915 950 7.991460 GGGAGTAGCAACTTACCTGTAATTATT 59.009 37.037 0.00 0.00 35.56 1.40
916 951 9.043079 GGAGTAGCAACTTACCTGTAATTATTC 57.957 37.037 0.00 0.00 35.56 1.75
917 952 9.819267 GAGTAGCAACTTACCTGTAATTATTCT 57.181 33.333 0.00 0.00 35.56 2.40
918 953 9.819267 AGTAGCAACTTACCTGTAATTATTCTC 57.181 33.333 0.00 0.00 29.00 2.87
919 954 9.043079 GTAGCAACTTACCTGTAATTATTCTCC 57.957 37.037 0.00 0.00 0.00 3.71
920 955 7.630082 AGCAACTTACCTGTAATTATTCTCCA 58.370 34.615 0.00 0.00 0.00 3.86
921 956 8.275040 AGCAACTTACCTGTAATTATTCTCCAT 58.725 33.333 0.00 0.00 0.00 3.41
922 957 8.560374 GCAACTTACCTGTAATTATTCTCCATC 58.440 37.037 0.00 0.00 0.00 3.51
923 958 9.613428 CAACTTACCTGTAATTATTCTCCATCA 57.387 33.333 0.00 0.00 0.00 3.07
924 959 9.838339 AACTTACCTGTAATTATTCTCCATCAG 57.162 33.333 0.00 0.00 0.00 2.90
925 960 8.432805 ACTTACCTGTAATTATTCTCCATCAGG 58.567 37.037 11.13 11.13 44.39 3.86
926 961 6.831664 ACCTGTAATTATTCTCCATCAGGT 57.168 37.500 12.14 12.14 46.04 4.00
928 963 6.830912 CCTGTAATTATTCTCCATCAGGTCA 58.169 40.000 6.40 0.00 37.16 4.02
929 964 7.456725 CCTGTAATTATTCTCCATCAGGTCAT 58.543 38.462 6.40 0.00 37.16 3.06
930 965 7.605691 CCTGTAATTATTCTCCATCAGGTCATC 59.394 40.741 6.40 0.00 37.16 2.92
1189 1231 3.071479 GCTGGAAATGTCGTTAACTCCA 58.929 45.455 10.57 10.57 31.07 3.86
1358 1400 0.248621 GTTGCTATCATTGGCCGCAC 60.249 55.000 0.00 0.00 0.00 5.34
1373 1415 1.727880 CCGCACTTGCAAAAATGATGG 59.272 47.619 0.00 2.02 42.21 3.51
1392 1434 4.255833 TGGCATTCAACAATCAAAGGAC 57.744 40.909 0.00 0.00 0.00 3.85
1393 1435 3.896888 TGGCATTCAACAATCAAAGGACT 59.103 39.130 0.00 0.00 0.00 3.85
1444 1492 4.694509 GTGATGGAGATACATCCTTGCATC 59.305 45.833 2.59 6.20 45.16 3.91
1449 1497 2.968574 AGATACATCCTTGCATCCGTCT 59.031 45.455 0.00 0.00 0.00 4.18
1455 1503 2.388735 TCCTTGCATCCGTCTGTCTAT 58.611 47.619 0.00 0.00 0.00 1.98
1458 1506 0.249031 TGCATCCGTCTGTCTATGCG 60.249 55.000 0.00 0.00 46.04 4.73
1492 1540 1.475682 CTTTGCTGGATGAAGAAGCCC 59.524 52.381 0.00 0.00 36.05 5.19
1773 1821 8.034058 ACTTACTGATAAATTCTGTCAGCAAC 57.966 34.615 12.15 0.00 42.33 4.17
1880 1928 2.064762 CGAGATATACAAGGCAGCAGC 58.935 52.381 0.00 0.00 41.10 5.25
2023 2071 6.996282 GGATAAACCCGAGAAAATCTATTCCA 59.004 38.462 0.00 0.00 0.00 3.53
2025 2073 3.793559 ACCCGAGAAAATCTATTCCACG 58.206 45.455 0.00 0.00 32.99 4.94
2127 2175 3.508793 ACTGGCTTAGTAGTTGCTCGTAA 59.491 43.478 0.00 0.00 38.04 3.18
2137 2185 3.535561 AGTTGCTCGTAAATCAGATGGG 58.464 45.455 0.00 0.00 0.00 4.00
2318 2372 3.949586 TGATGTGGGGATAATTGCAGA 57.050 42.857 0.00 0.00 0.00 4.26
2324 2378 5.704354 TGTGGGGATAATTGCAGACATAAT 58.296 37.500 0.00 0.00 0.00 1.28
2369 2423 7.047271 GGGCAAATGGTGTATGATAAAAATGT 58.953 34.615 0.00 0.00 0.00 2.71
2521 2575 7.283625 TGAAACTGTGTTTGCATTTAGGTAT 57.716 32.000 0.10 0.00 0.00 2.73
2640 2695 4.083271 GGACAGTGACTGTTGCCTAAAATC 60.083 45.833 20.42 2.49 45.44 2.17
2812 2868 0.895530 TGAAGACCTTCAGTAGCCGG 59.104 55.000 8.27 0.00 43.90 6.13
2836 2892 0.598065 ATTTTTCACTCGGTGCAGGC 59.402 50.000 0.00 0.00 32.98 4.85
3014 3071 6.500041 AGCTCTGTTTGTATTGCGTTTTTAA 58.500 32.000 0.00 0.00 0.00 1.52
3029 3086 7.167481 TGCGTTTTTAATTTTGAGAAAACACG 58.833 30.769 10.10 4.31 40.29 4.49
3040 3097 1.748493 AGAAAACACGAAAGCCTTGCA 59.252 42.857 0.00 0.00 0.00 4.08
3063 3120 8.732413 GCATTTCGATGCATTGATAGAAATAA 57.268 30.769 17.46 7.37 46.25 1.40
3093 3150 1.826385 CCTAAGAAGGCCAACACCTG 58.174 55.000 5.01 0.00 39.93 4.00
3107 3164 5.216566 CAACACCTGGATATTACAACACG 57.783 43.478 0.00 0.00 0.00 4.49
3108 3165 4.811969 ACACCTGGATATTACAACACGA 57.188 40.909 0.00 0.00 0.00 4.35
3109 3166 4.501071 ACACCTGGATATTACAACACGAC 58.499 43.478 0.00 0.00 0.00 4.34
3110 3167 4.020928 ACACCTGGATATTACAACACGACA 60.021 41.667 0.00 0.00 0.00 4.35
3184 3241 9.661563 TTTACATTCTCGAAATTAGGAAAGCTA 57.338 29.630 0.00 0.00 0.00 3.32
3218 3275 1.085091 GCTCAGCACCAGATCTGTTG 58.915 55.000 21.11 18.30 0.00 3.33
3267 3324 2.609002 CTGCCCTGCAAAAGTTTTGAAC 59.391 45.455 28.36 14.14 38.41 3.18
3269 3326 2.887337 CCCTGCAAAAGTTTTGAACGT 58.113 42.857 28.36 0.00 36.23 3.99
3346 3403 2.156917 TCTTGAAATGCACAGAGCCAG 58.843 47.619 0.00 0.00 44.83 4.85
3513 4581 1.066858 TCGGAGTCCAGCAATGAACTC 60.067 52.381 10.49 0.00 37.90 3.01
3563 4632 4.145052 AGTAAACAAGCTTGGGAGAAAGG 58.855 43.478 29.18 2.17 0.00 3.11
3564 4633 3.312736 AAACAAGCTTGGGAGAAAGGA 57.687 42.857 29.18 0.00 0.00 3.36
3565 4634 2.575805 ACAAGCTTGGGAGAAAGGAG 57.424 50.000 29.18 0.86 0.00 3.69
3579 4648 8.487028 TGGGAGAAAGGAGATATTTTAGAACTC 58.513 37.037 0.00 0.00 0.00 3.01
3726 4795 2.714250 AGGGAACATTGTTACCACCAGA 59.286 45.455 28.52 0.00 0.00 3.86
3867 4936 3.521126 ACTCAGGTCTGGATTGTTAGCAT 59.479 43.478 0.00 0.00 0.00 3.79
3959 5033 8.897872 ATTCTCAAAATGCTTCTGTCATTTTT 57.102 26.923 10.01 0.00 46.15 1.94
3961 5035 6.702723 TCTCAAAATGCTTCTGTCATTTTTGG 59.297 34.615 10.01 7.13 46.15 3.28
3962 5036 5.236911 TCAAAATGCTTCTGTCATTTTTGGC 59.763 36.000 10.01 0.00 46.15 4.52
3964 5038 1.952990 TGCTTCTGTCATTTTTGGCGA 59.047 42.857 0.00 0.00 0.00 5.54
3965 5039 2.030893 TGCTTCTGTCATTTTTGGCGAG 60.031 45.455 0.00 0.00 0.00 5.03
3966 5040 2.589014 CTTCTGTCATTTTTGGCGAGC 58.411 47.619 0.00 0.00 0.00 5.03
3967 5041 0.881118 TCTGTCATTTTTGGCGAGCC 59.119 50.000 7.26 7.26 0.00 4.70
4022 5133 7.104290 AGTCTGTAAAGTTAATGCCTTCCTAC 58.896 38.462 0.00 0.00 0.00 3.18
4024 5135 5.180271 TGTAAAGTTAATGCCTTCCTACGG 58.820 41.667 0.00 0.00 0.00 4.02
4097 5290 9.814899 TTTTAATATACACTGCCAAATGAATGG 57.185 29.630 0.00 0.00 43.70 3.16
4174 5367 1.994885 ATCACGGGCCGGAATGGAAT 61.995 55.000 31.78 7.12 42.00 3.01
4260 5453 3.068590 GTCCTCCCGAAACGAATATACCA 59.931 47.826 0.00 0.00 0.00 3.25
4305 5498 2.945668 CCTTCAAATCGGAGGAATCACC 59.054 50.000 0.00 0.00 39.35 4.02
4312 5505 1.895020 CGGAGGAATCACCCGGAACA 61.895 60.000 0.73 0.00 39.59 3.18
4320 5513 2.203788 ACCCGGAACAGCCTCTCA 60.204 61.111 0.73 0.00 0.00 3.27
4394 6357 2.110006 GCCGCTCATCTCCTTCCC 59.890 66.667 0.00 0.00 0.00 3.97
4457 6421 2.756283 CCTCTCCTTCCTCCGCGT 60.756 66.667 4.92 0.00 0.00 6.01
4474 6438 0.605589 CGTTGTCCTCTGCTCCTCTT 59.394 55.000 0.00 0.00 0.00 2.85
4488 6452 0.456995 CCTCTTTGTCGTCTCCTCGC 60.457 60.000 0.00 0.00 0.00 5.03
4507 6471 1.341080 CCAATTGGCTTCAAGGTGGT 58.659 50.000 12.53 0.00 35.98 4.16
4514 6478 0.895100 GCTTCAAGGTGGTGGATGCA 60.895 55.000 0.00 0.00 33.42 3.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.331954 GAAGGGGGAAAGGGGAAGAC 59.668 60.000 0.00 0.00 0.00 3.01
1 2 0.849540 GGAAGGGGGAAAGGGGAAGA 60.850 60.000 0.00 0.00 0.00 2.87
2 3 1.697910 GGAAGGGGGAAAGGGGAAG 59.302 63.158 0.00 0.00 0.00 3.46
3 4 2.235761 CGGAAGGGGGAAAGGGGAA 61.236 63.158 0.00 0.00 0.00 3.97
4 5 2.612746 CGGAAGGGGGAAAGGGGA 60.613 66.667 0.00 0.00 0.00 4.81
5 6 2.939353 ACGGAAGGGGGAAAGGGG 60.939 66.667 0.00 0.00 0.00 4.79
19 20 0.537653 GGGGAAGAAGAGAAGGACGG 59.462 60.000 0.00 0.00 0.00 4.79
20 21 0.537653 GGGGGAAGAAGAGAAGGACG 59.462 60.000 0.00 0.00 0.00 4.79
88 89 3.130160 GAAGAGCAGGCAAGCCGG 61.130 66.667 6.88 6.88 41.95 6.13
93 94 1.593787 CGAGAGGAAGAGCAGGCAA 59.406 57.895 0.00 0.00 0.00 4.52
102 103 3.132481 GAGCCGGAGCGAGAGGAAG 62.132 68.421 5.05 0.00 46.67 3.46
150 151 1.717032 CGGAAGATACCAGGGATGGA 58.283 55.000 0.31 0.00 0.00 3.41
157 158 2.230940 CGCGTGCGGAAGATACCAG 61.231 63.158 6.30 0.00 35.56 4.00
158 159 2.202690 CGCGTGCGGAAGATACCA 60.203 61.111 6.30 0.00 35.56 3.25
160 161 2.995482 CACGCGTGCGGAAGATAC 59.005 61.111 28.16 0.00 44.69 2.24
181 182 3.541713 GGCAGCTACGGAGAGGGG 61.542 72.222 0.00 0.00 0.00 4.79
204 209 1.065636 CGAACCCTAGAAAGAACCCCC 60.066 57.143 0.00 0.00 0.00 5.40
226 235 3.022914 CGTCGGTAGCGCGATTCC 61.023 66.667 20.80 11.03 0.00 3.01
229 238 0.385223 GATAACGTCGGTAGCGCGAT 60.385 55.000 28.18 21.65 0.00 4.58
256 265 3.627577 ACTTATTGATTTAGGCTGCCGTG 59.372 43.478 13.96 0.00 0.00 4.94
261 270 6.543831 ACCAGCTAACTTATTGATTTAGGCTG 59.456 38.462 0.00 0.00 31.85 4.85
268 277 7.169308 CGATTCGTACCAGCTAACTTATTGATT 59.831 37.037 0.00 0.00 0.00 2.57
271 280 5.975344 TCGATTCGTACCAGCTAACTTATTG 59.025 40.000 5.89 0.00 0.00 1.90
274 283 4.637534 ACTCGATTCGTACCAGCTAACTTA 59.362 41.667 5.89 0.00 0.00 2.24
277 286 3.417690 ACTCGATTCGTACCAGCTAAC 57.582 47.619 5.89 0.00 0.00 2.34
321 343 2.832672 GCTGTTGCCAACTACTATGC 57.167 50.000 9.30 0.70 0.00 3.14
335 357 3.313249 GGTTTGTAGTTTGTACGGCTGTT 59.687 43.478 1.99 0.00 0.00 3.16
338 360 2.137523 CGGTTTGTAGTTTGTACGGCT 58.862 47.619 0.00 0.00 0.00 5.52
358 383 7.391833 AGGATGAATAAAGACAGAAAGGACAAC 59.608 37.037 0.00 0.00 0.00 3.32
377 402 3.739209 CGCAGCTTGATACAGAGGATGAA 60.739 47.826 0.00 0.00 0.00 2.57
393 418 1.189524 TGTACCCAACTACCGCAGCT 61.190 55.000 0.00 0.00 0.00 4.24
394 419 0.107848 ATGTACCCAACTACCGCAGC 60.108 55.000 0.00 0.00 0.00 5.25
395 420 2.166870 TGTATGTACCCAACTACCGCAG 59.833 50.000 0.00 0.00 0.00 5.18
396 421 2.177734 TGTATGTACCCAACTACCGCA 58.822 47.619 0.00 0.00 0.00 5.69
397 422 2.965572 TGTATGTACCCAACTACCGC 57.034 50.000 0.00 0.00 0.00 5.68
398 423 4.142116 TGTGATGTATGTACCCAACTACCG 60.142 45.833 0.00 0.00 0.00 4.02
400 425 5.810587 CAGTGTGATGTATGTACCCAACTAC 59.189 44.000 0.00 0.00 0.00 2.73
401 426 5.717654 TCAGTGTGATGTATGTACCCAACTA 59.282 40.000 0.00 0.00 0.00 2.24
402 427 4.530553 TCAGTGTGATGTATGTACCCAACT 59.469 41.667 0.00 0.00 0.00 3.16
403 428 4.827692 TCAGTGTGATGTATGTACCCAAC 58.172 43.478 0.00 0.00 0.00 3.77
414 444 2.936993 GCCGGAAATCTCAGTGTGATGT 60.937 50.000 5.05 3.00 0.00 3.06
416 446 1.740380 CGCCGGAAATCTCAGTGTGAT 60.740 52.381 5.05 1.79 0.00 3.06
419 449 1.079127 CCGCCGGAAATCTCAGTGT 60.079 57.895 5.05 0.00 0.00 3.55
422 452 2.978452 ATCGCCGCCGGAAATCTCAG 62.978 60.000 7.68 0.00 34.56 3.35
426 456 3.649986 CCATCGCCGCCGGAAATC 61.650 66.667 7.68 0.00 34.56 2.17
454 484 6.401153 GCATAACTCTAGAGACAAAACAACGG 60.401 42.308 26.57 0.00 0.00 4.44
483 513 4.119442 ACAAGATTGGCAGCAATTGATC 57.881 40.909 10.34 1.96 0.00 2.92
485 515 3.655486 CAACAAGATTGGCAGCAATTGA 58.345 40.909 10.34 0.00 0.00 2.57
492 522 0.680618 TTGGGCAACAAGATTGGCAG 59.319 50.000 14.20 0.00 45.48 4.85
507 537 4.646492 ACCATAACTAGTAGTACGGTTGGG 59.354 45.833 18.34 19.16 0.00 4.12
520 550 5.221661 GGTCCACCCAATCTACCATAACTAG 60.222 48.000 0.00 0.00 0.00 2.57
521 551 4.657039 GGTCCACCCAATCTACCATAACTA 59.343 45.833 0.00 0.00 0.00 2.24
522 552 3.458487 GGTCCACCCAATCTACCATAACT 59.542 47.826 0.00 0.00 0.00 2.24
542 572 3.945640 AAGAACAAGGTTGTACTGGGT 57.054 42.857 0.00 0.00 41.31 4.51
543 573 4.736464 GCAAAAGAACAAGGTTGTACTGGG 60.736 45.833 0.00 0.00 41.31 4.45
610 640 9.871238 GTGAAAGACTCAATTAGTATCACCTAA 57.129 33.333 0.00 0.00 39.07 2.69
611 641 9.256228 AGTGAAAGACTCAATTAGTATCACCTA 57.744 33.333 11.48 0.00 42.12 3.08
620 650 5.582665 GGGCAGTAGTGAAAGACTCAATTAG 59.417 44.000 0.42 0.00 35.22 1.73
625 655 2.300152 CAGGGCAGTAGTGAAAGACTCA 59.700 50.000 0.42 0.00 35.96 3.41
633 663 0.471022 TCCACACAGGGCAGTAGTGA 60.471 55.000 0.42 0.00 38.24 3.41
635 665 1.279271 GATTCCACACAGGGCAGTAGT 59.721 52.381 0.00 0.00 38.24 2.73
638 668 0.478072 TTGATTCCACACAGGGCAGT 59.522 50.000 0.00 0.00 38.24 4.40
639 669 1.619654 TTTGATTCCACACAGGGCAG 58.380 50.000 0.00 0.00 38.24 4.85
667 702 6.600822 TCTCATCTAAAATCTTTCTTGGGCAG 59.399 38.462 0.00 0.00 0.00 4.85
674 709 4.813697 GCCGCTCTCATCTAAAATCTTTCT 59.186 41.667 0.00 0.00 0.00 2.52
675 710 4.024472 GGCCGCTCTCATCTAAAATCTTTC 60.024 45.833 0.00 0.00 0.00 2.62
677 712 3.471680 GGCCGCTCTCATCTAAAATCTT 58.528 45.455 0.00 0.00 0.00 2.40
692 727 4.699522 GAAGGTTGTCCGGCCGCT 62.700 66.667 22.85 7.36 39.05 5.52
699 734 0.526211 GAAATGGGCGAAGGTTGTCC 59.474 55.000 0.00 0.00 0.00 4.02
700 735 1.243902 TGAAATGGGCGAAGGTTGTC 58.756 50.000 0.00 0.00 0.00 3.18
701 736 1.613437 CTTGAAATGGGCGAAGGTTGT 59.387 47.619 0.00 0.00 0.00 3.32
709 744 5.291128 CAGTTAGTAGTACTTGAAATGGGCG 59.709 44.000 8.40 0.00 0.00 6.13
772 807 9.726438 GGTGAGGCAAGTCATTATTATATAACT 57.274 33.333 0.00 0.00 0.00 2.24
773 808 8.947115 GGGTGAGGCAAGTCATTATTATATAAC 58.053 37.037 0.00 0.00 0.00 1.89
774 809 8.107095 GGGGTGAGGCAAGTCATTATTATATAA 58.893 37.037 0.00 0.00 0.00 0.98
775 810 7.311675 GGGGGTGAGGCAAGTCATTATTATATA 60.312 40.741 0.00 0.00 0.00 0.86
776 811 6.485171 GGGGTGAGGCAAGTCATTATTATAT 58.515 40.000 0.00 0.00 0.00 0.86
777 812 5.222048 GGGGGTGAGGCAAGTCATTATTATA 60.222 44.000 0.00 0.00 0.00 0.98
778 813 4.447762 GGGGGTGAGGCAAGTCATTATTAT 60.448 45.833 0.00 0.00 0.00 1.28
779 814 3.117663 GGGGGTGAGGCAAGTCATTATTA 60.118 47.826 0.00 0.00 0.00 0.98
780 815 2.358195 GGGGGTGAGGCAAGTCATTATT 60.358 50.000 0.00 0.00 0.00 1.40
781 816 1.215423 GGGGGTGAGGCAAGTCATTAT 59.785 52.381 0.00 0.00 0.00 1.28
782 817 0.623723 GGGGGTGAGGCAAGTCATTA 59.376 55.000 0.00 0.00 0.00 1.90
783 818 1.142688 AGGGGGTGAGGCAAGTCATT 61.143 55.000 0.00 0.00 0.00 2.57
784 819 1.542375 AGGGGGTGAGGCAAGTCAT 60.542 57.895 0.00 0.00 0.00 3.06
785 820 2.121963 AGGGGGTGAGGCAAGTCA 60.122 61.111 0.00 0.00 0.00 3.41
786 821 1.492993 AAGAGGGGGTGAGGCAAGTC 61.493 60.000 0.00 0.00 0.00 3.01
787 822 1.068352 AAAGAGGGGGTGAGGCAAGT 61.068 55.000 0.00 0.00 0.00 3.16
788 823 0.610232 CAAAGAGGGGGTGAGGCAAG 60.610 60.000 0.00 0.00 0.00 4.01
789 824 1.065410 TCAAAGAGGGGGTGAGGCAA 61.065 55.000 0.00 0.00 0.00 4.52
790 825 1.065410 TTCAAAGAGGGGGTGAGGCA 61.065 55.000 0.00 0.00 0.00 4.75
791 826 0.332972 ATTCAAAGAGGGGGTGAGGC 59.667 55.000 0.00 0.00 0.00 4.70
792 827 1.918957 AGATTCAAAGAGGGGGTGAGG 59.081 52.381 0.00 0.00 0.00 3.86
793 828 3.777522 AGTAGATTCAAAGAGGGGGTGAG 59.222 47.826 0.00 0.00 0.00 3.51
794 829 3.775316 GAGTAGATTCAAAGAGGGGGTGA 59.225 47.826 0.00 0.00 0.00 4.02
795 830 3.118223 GGAGTAGATTCAAAGAGGGGGTG 60.118 52.174 0.00 0.00 0.00 4.61
796 831 3.116174 GGAGTAGATTCAAAGAGGGGGT 58.884 50.000 0.00 0.00 0.00 4.95
797 832 2.439880 GGGAGTAGATTCAAAGAGGGGG 59.560 54.545 0.00 0.00 0.00 5.40
798 833 3.388913 AGGGAGTAGATTCAAAGAGGGG 58.611 50.000 0.00 0.00 0.00 4.79
799 834 4.100808 CAGAGGGAGTAGATTCAAAGAGGG 59.899 50.000 0.00 0.00 0.00 4.30
800 835 4.714308 ACAGAGGGAGTAGATTCAAAGAGG 59.286 45.833 0.00 0.00 0.00 3.69
801 836 5.930837 ACAGAGGGAGTAGATTCAAAGAG 57.069 43.478 0.00 0.00 0.00 2.85
802 837 5.780282 TGAACAGAGGGAGTAGATTCAAAGA 59.220 40.000 0.00 0.00 0.00 2.52
803 838 5.872070 GTGAACAGAGGGAGTAGATTCAAAG 59.128 44.000 0.00 0.00 0.00 2.77
804 839 5.306937 TGTGAACAGAGGGAGTAGATTCAAA 59.693 40.000 0.00 0.00 0.00 2.69
805 840 4.838423 TGTGAACAGAGGGAGTAGATTCAA 59.162 41.667 0.00 0.00 0.00 2.69
806 841 4.416516 TGTGAACAGAGGGAGTAGATTCA 58.583 43.478 0.00 0.00 0.00 2.57
807 842 5.407407 TTGTGAACAGAGGGAGTAGATTC 57.593 43.478 0.00 0.00 0.00 2.52
808 843 6.176183 CAATTGTGAACAGAGGGAGTAGATT 58.824 40.000 0.00 0.00 0.00 2.40
809 844 5.249393 ACAATTGTGAACAGAGGGAGTAGAT 59.751 40.000 11.07 0.00 0.00 1.98
810 845 4.593206 ACAATTGTGAACAGAGGGAGTAGA 59.407 41.667 11.07 0.00 0.00 2.59
811 846 4.899502 ACAATTGTGAACAGAGGGAGTAG 58.100 43.478 11.07 0.00 0.00 2.57
812 847 4.974645 ACAATTGTGAACAGAGGGAGTA 57.025 40.909 11.07 0.00 0.00 2.59
813 848 3.864789 ACAATTGTGAACAGAGGGAGT 57.135 42.857 11.07 0.00 0.00 3.85
814 849 5.409826 GTCTTACAATTGTGAACAGAGGGAG 59.590 44.000 21.42 0.00 0.00 4.30
815 850 5.305585 GTCTTACAATTGTGAACAGAGGGA 58.694 41.667 21.42 1.96 0.00 4.20
816 851 4.152402 CGTCTTACAATTGTGAACAGAGGG 59.848 45.833 21.42 7.97 0.00 4.30
817 852 4.988540 TCGTCTTACAATTGTGAACAGAGG 59.011 41.667 21.42 18.65 0.00 3.69
818 853 6.712241 ATCGTCTTACAATTGTGAACAGAG 57.288 37.500 21.42 8.92 0.00 3.35
819 854 7.351981 CAAATCGTCTTACAATTGTGAACAGA 58.648 34.615 21.42 14.28 0.00 3.41
820 855 6.578545 CCAAATCGTCTTACAATTGTGAACAG 59.421 38.462 21.42 11.14 0.00 3.16
821 856 6.434596 CCAAATCGTCTTACAATTGTGAACA 58.565 36.000 21.42 0.00 0.00 3.18
822 857 5.342259 GCCAAATCGTCTTACAATTGTGAAC 59.658 40.000 21.42 14.01 0.00 3.18
823 858 5.009110 TGCCAAATCGTCTTACAATTGTGAA 59.991 36.000 21.42 10.14 0.00 3.18
824 859 4.517075 TGCCAAATCGTCTTACAATTGTGA 59.483 37.500 21.42 12.21 0.00 3.58
825 860 4.793071 TGCCAAATCGTCTTACAATTGTG 58.207 39.130 21.42 5.44 0.00 3.33
826 861 4.518970 ACTGCCAAATCGTCTTACAATTGT 59.481 37.500 16.68 16.68 0.00 2.71
827 862 5.046910 ACTGCCAAATCGTCTTACAATTG 57.953 39.130 3.24 3.24 0.00 2.32
828 863 5.705609 AACTGCCAAATCGTCTTACAATT 57.294 34.783 0.00 0.00 0.00 2.32
829 864 5.705609 AAACTGCCAAATCGTCTTACAAT 57.294 34.783 0.00 0.00 0.00 2.71
830 865 6.621316 TTAAACTGCCAAATCGTCTTACAA 57.379 33.333 0.00 0.00 0.00 2.41
831 866 6.811253 ATTAAACTGCCAAATCGTCTTACA 57.189 33.333 0.00 0.00 0.00 2.41
832 867 9.615295 TTAAATTAAACTGCCAAATCGTCTTAC 57.385 29.630 0.00 0.00 0.00 2.34
834 869 8.974408 GTTTAAATTAAACTGCCAAATCGTCTT 58.026 29.630 18.36 0.00 43.50 3.01
835 870 8.515473 GTTTAAATTAAACTGCCAAATCGTCT 57.485 30.769 18.36 0.00 43.50 4.18
848 883 8.515473 AGACATTTCGGCAGTTTAAATTAAAC 57.485 30.769 18.07 18.07 46.36 2.01
850 885 9.615295 GTAAGACATTTCGGCAGTTTAAATTAA 57.385 29.630 0.00 0.00 0.00 1.40
851 886 8.784994 TGTAAGACATTTCGGCAGTTTAAATTA 58.215 29.630 0.00 0.00 0.00 1.40
852 887 7.653647 TGTAAGACATTTCGGCAGTTTAAATT 58.346 30.769 0.00 0.00 0.00 1.82
853 888 7.209471 TGTAAGACATTTCGGCAGTTTAAAT 57.791 32.000 0.00 0.00 0.00 1.40
854 889 6.621316 TGTAAGACATTTCGGCAGTTTAAA 57.379 33.333 0.00 0.00 0.00 1.52
855 890 6.653320 AGATGTAAGACATTTCGGCAGTTTAA 59.347 34.615 0.00 0.00 39.27 1.52
856 891 6.092122 CAGATGTAAGACATTTCGGCAGTTTA 59.908 38.462 0.00 0.00 39.27 2.01
857 892 5.003804 AGATGTAAGACATTTCGGCAGTTT 58.996 37.500 0.00 0.00 39.27 2.66
858 893 4.393062 CAGATGTAAGACATTTCGGCAGTT 59.607 41.667 0.00 0.00 39.27 3.16
859 894 3.935203 CAGATGTAAGACATTTCGGCAGT 59.065 43.478 0.00 0.00 39.27 4.40
860 895 3.935203 ACAGATGTAAGACATTTCGGCAG 59.065 43.478 0.00 0.00 39.27 4.85
861 896 3.684305 CACAGATGTAAGACATTTCGGCA 59.316 43.478 0.00 0.00 39.27 5.69
862 897 3.932710 TCACAGATGTAAGACATTTCGGC 59.067 43.478 0.00 0.00 39.27 5.54
863 898 5.444613 CGTTCACAGATGTAAGACATTTCGG 60.445 44.000 0.00 0.00 39.27 4.30
864 899 5.344933 TCGTTCACAGATGTAAGACATTTCG 59.655 40.000 0.00 0.00 39.27 3.46
865 900 6.183360 CCTCGTTCACAGATGTAAGACATTTC 60.183 42.308 0.00 0.00 39.27 2.17
866 901 5.639506 CCTCGTTCACAGATGTAAGACATTT 59.360 40.000 0.00 0.00 39.27 2.32
867 902 5.171476 CCTCGTTCACAGATGTAAGACATT 58.829 41.667 0.00 0.00 39.27 2.71
868 903 4.382040 CCCTCGTTCACAGATGTAAGACAT 60.382 45.833 0.00 0.00 42.43 3.06
869 904 3.056821 CCCTCGTTCACAGATGTAAGACA 60.057 47.826 0.00 0.00 0.00 3.41
870 905 3.192844 TCCCTCGTTCACAGATGTAAGAC 59.807 47.826 0.00 0.00 0.00 3.01
871 906 3.427573 TCCCTCGTTCACAGATGTAAGA 58.572 45.455 0.00 0.00 0.00 2.10
872 907 3.193691 ACTCCCTCGTTCACAGATGTAAG 59.806 47.826 0.00 0.00 0.00 2.34
873 908 3.162666 ACTCCCTCGTTCACAGATGTAA 58.837 45.455 0.00 0.00 0.00 2.41
874 909 2.803956 ACTCCCTCGTTCACAGATGTA 58.196 47.619 0.00 0.00 0.00 2.29
875 910 1.633774 ACTCCCTCGTTCACAGATGT 58.366 50.000 0.00 0.00 0.00 3.06
876 911 2.480416 GCTACTCCCTCGTTCACAGATG 60.480 54.545 0.00 0.00 0.00 2.90
877 912 1.751924 GCTACTCCCTCGTTCACAGAT 59.248 52.381 0.00 0.00 0.00 2.90
878 913 1.174783 GCTACTCCCTCGTTCACAGA 58.825 55.000 0.00 0.00 0.00 3.41
879 914 0.888619 TGCTACTCCCTCGTTCACAG 59.111 55.000 0.00 0.00 0.00 3.66
880 915 1.000506 GTTGCTACTCCCTCGTTCACA 59.999 52.381 0.00 0.00 0.00 3.58
881 916 1.272769 AGTTGCTACTCCCTCGTTCAC 59.727 52.381 0.00 0.00 0.00 3.18
882 917 1.629043 AGTTGCTACTCCCTCGTTCA 58.371 50.000 0.00 0.00 0.00 3.18
883 918 2.745515 AAGTTGCTACTCCCTCGTTC 57.254 50.000 0.07 0.00 31.99 3.95
884 919 2.233186 GGTAAGTTGCTACTCCCTCGTT 59.767 50.000 0.07 0.00 31.99 3.85
885 920 1.823610 GGTAAGTTGCTACTCCCTCGT 59.176 52.381 0.07 0.00 31.99 4.18
886 921 2.100989 AGGTAAGTTGCTACTCCCTCG 58.899 52.381 11.87 0.00 32.87 4.63
887 922 2.832733 ACAGGTAAGTTGCTACTCCCTC 59.167 50.000 13.93 1.22 34.89 4.30
888 923 2.903926 ACAGGTAAGTTGCTACTCCCT 58.096 47.619 11.87 11.87 36.56 4.20
889 924 4.813750 TTACAGGTAAGTTGCTACTCCC 57.186 45.455 0.07 5.15 31.99 4.30
890 925 8.959705 AATAATTACAGGTAAGTTGCTACTCC 57.040 34.615 0.07 0.00 31.99 3.85
891 926 9.819267 AGAATAATTACAGGTAAGTTGCTACTC 57.181 33.333 0.07 0.00 31.99 2.59
892 927 9.819267 GAGAATAATTACAGGTAAGTTGCTACT 57.181 33.333 0.00 0.00 35.68 2.57
893 928 9.043079 GGAGAATAATTACAGGTAAGTTGCTAC 57.957 37.037 0.00 0.00 0.00 3.58
894 929 8.764558 TGGAGAATAATTACAGGTAAGTTGCTA 58.235 33.333 0.00 0.00 0.00 3.49
895 930 7.630082 TGGAGAATAATTACAGGTAAGTTGCT 58.370 34.615 0.00 0.00 0.00 3.91
896 931 7.859325 TGGAGAATAATTACAGGTAAGTTGC 57.141 36.000 0.00 0.00 0.00 4.17
897 932 9.613428 TGATGGAGAATAATTACAGGTAAGTTG 57.387 33.333 0.00 0.00 0.00 3.16
898 933 9.838339 CTGATGGAGAATAATTACAGGTAAGTT 57.162 33.333 0.00 0.00 0.00 2.66
899 934 8.432805 CCTGATGGAGAATAATTACAGGTAAGT 58.567 37.037 0.00 0.00 38.83 2.24
900 935 8.839310 CCTGATGGAGAATAATTACAGGTAAG 57.161 38.462 0.00 0.00 38.83 2.34
904 939 6.830912 TGACCTGATGGAGAATAATTACAGG 58.169 40.000 0.00 0.00 45.93 4.00
905 940 7.330454 CGATGACCTGATGGAGAATAATTACAG 59.670 40.741 0.00 0.00 37.04 2.74
906 941 7.154656 CGATGACCTGATGGAGAATAATTACA 58.845 38.462 0.00 0.00 37.04 2.41
907 942 7.155328 ACGATGACCTGATGGAGAATAATTAC 58.845 38.462 0.00 0.00 37.04 1.89
908 943 7.015195 TGACGATGACCTGATGGAGAATAATTA 59.985 37.037 0.00 0.00 37.04 1.40
909 944 6.179906 ACGATGACCTGATGGAGAATAATT 57.820 37.500 0.00 0.00 37.04 1.40
910 945 5.305386 TGACGATGACCTGATGGAGAATAAT 59.695 40.000 0.00 0.00 37.04 1.28
911 946 4.649218 TGACGATGACCTGATGGAGAATAA 59.351 41.667 0.00 0.00 37.04 1.40
912 947 4.215109 TGACGATGACCTGATGGAGAATA 58.785 43.478 0.00 0.00 37.04 1.75
913 948 3.033909 TGACGATGACCTGATGGAGAAT 58.966 45.455 0.00 0.00 37.04 2.40
914 949 2.456577 TGACGATGACCTGATGGAGAA 58.543 47.619 0.00 0.00 37.04 2.87
915 950 2.143876 TGACGATGACCTGATGGAGA 57.856 50.000 0.00 0.00 37.04 3.71
916 951 3.129109 CAATGACGATGACCTGATGGAG 58.871 50.000 0.00 0.00 37.04 3.86
917 952 2.501316 ACAATGACGATGACCTGATGGA 59.499 45.455 0.00 0.00 37.04 3.41
918 953 2.868583 GACAATGACGATGACCTGATGG 59.131 50.000 0.00 0.00 39.83 3.51
919 954 3.790091 AGACAATGACGATGACCTGATG 58.210 45.455 0.00 0.00 0.00 3.07
920 955 5.536260 CATAGACAATGACGATGACCTGAT 58.464 41.667 0.32 0.00 37.86 2.90
921 956 4.737649 GCATAGACAATGACGATGACCTGA 60.738 45.833 9.49 0.00 37.86 3.86
922 957 3.492383 GCATAGACAATGACGATGACCTG 59.508 47.826 9.49 0.00 37.86 4.00
923 958 3.386078 AGCATAGACAATGACGATGACCT 59.614 43.478 9.49 0.00 37.86 3.85
924 959 3.492383 CAGCATAGACAATGACGATGACC 59.508 47.826 9.49 0.00 37.86 4.02
925 960 4.363138 TCAGCATAGACAATGACGATGAC 58.637 43.478 9.49 2.35 37.86 3.06
926 961 4.654091 TCAGCATAGACAATGACGATGA 57.346 40.909 9.49 0.00 37.86 2.92
927 962 7.592439 ATTATCAGCATAGACAATGACGATG 57.408 36.000 2.09 2.09 37.86 3.84
928 963 7.658982 ACAATTATCAGCATAGACAATGACGAT 59.341 33.333 0.00 0.00 37.86 3.73
929 964 6.986231 ACAATTATCAGCATAGACAATGACGA 59.014 34.615 0.00 0.00 37.86 4.20
930 965 7.182361 ACAATTATCAGCATAGACAATGACG 57.818 36.000 0.00 0.00 37.86 4.35
980 1015 9.817809 TTTTCATGGTCAGTGACTAGATATAAC 57.182 33.333 22.18 3.56 32.47 1.89
1189 1231 2.504367 CCCGGACAGTTTTGACTCAAT 58.496 47.619 0.73 0.00 0.00 2.57
1358 1400 5.049336 TGTTGAATGCCATCATTTTTGCAAG 60.049 36.000 0.00 0.00 42.60 4.01
1373 1415 5.382618 AGAGTCCTTTGATTGTTGAATGC 57.617 39.130 0.00 0.00 0.00 3.56
1392 1434 3.772025 ACCCCAAGAATGAGACACTAGAG 59.228 47.826 0.00 0.00 0.00 2.43
1393 1435 3.769844 GACCCCAAGAATGAGACACTAGA 59.230 47.826 0.00 0.00 0.00 2.43
1444 1492 1.148157 CTTGGCGCATAGACAGACGG 61.148 60.000 10.83 0.00 40.28 4.79
1449 1497 3.889227 GCACTTGGCGCATAGACA 58.111 55.556 10.83 0.00 34.88 3.41
1458 1506 1.871126 GCAAAGGAGGAGCACTTGGC 61.871 60.000 0.00 0.00 45.30 4.52
1773 1821 1.531522 GCTTTGCAGTTTGTGTCGCG 61.532 55.000 0.00 0.00 0.00 5.87
1880 1928 3.300388 TGACTGTAGCTCCTAAGGGATG 58.700 50.000 0.00 0.00 41.36 3.51
2009 2057 4.579869 ACTGCACGTGGAATAGATTTTCT 58.420 39.130 18.88 0.00 0.00 2.52
2023 2071 0.603569 CTCCACTAAGGACTGCACGT 59.396 55.000 0.00 0.00 43.07 4.49
2025 2073 0.321671 TGCTCCACTAAGGACTGCAC 59.678 55.000 0.00 0.00 41.24 4.57
2127 2175 2.441001 GGAGACCATGACCCATCTGATT 59.559 50.000 0.00 0.00 0.00 2.57
2137 2185 0.539051 CAGAGGGTGGAGACCATGAC 59.461 60.000 0.00 0.00 45.25 3.06
2318 2372 5.928976 TGCCATGCAAGTAGTAGATTATGT 58.071 37.500 0.00 0.00 34.76 2.29
2324 2378 3.324846 CCCTATGCCATGCAAGTAGTAGA 59.675 47.826 0.00 0.00 43.62 2.59
2521 2575 6.916360 ATCAGGCAAAAACAAGAGGAAATA 57.084 33.333 0.00 0.00 0.00 1.40
2640 2695 7.806690 ACCATGTCCGAAATCATAAATTATCG 58.193 34.615 0.00 0.00 0.00 2.92
2806 2862 2.682856 GAGTGAAAAATGCATCCGGCTA 59.317 45.455 0.00 0.00 45.15 3.93
2812 2868 2.253603 GCACCGAGTGAAAAATGCATC 58.746 47.619 0.00 0.00 35.23 3.91
3014 3071 5.262588 AGGCTTTCGTGTTTTCTCAAAAT 57.737 34.783 0.00 0.00 32.22 1.82
3091 3148 3.869246 GGGTGTCGTGTTGTAATATCCAG 59.131 47.826 0.00 0.00 0.00 3.86
3092 3149 3.516300 AGGGTGTCGTGTTGTAATATCCA 59.484 43.478 0.00 0.00 0.00 3.41
3093 3150 4.133013 AGGGTGTCGTGTTGTAATATCC 57.867 45.455 0.00 0.00 0.00 2.59
3094 3151 5.899299 ACTAGGGTGTCGTGTTGTAATATC 58.101 41.667 0.00 0.00 0.00 1.63
3095 3152 5.927281 ACTAGGGTGTCGTGTTGTAATAT 57.073 39.130 0.00 0.00 0.00 1.28
3096 3153 5.472148 CAACTAGGGTGTCGTGTTGTAATA 58.528 41.667 0.00 0.00 34.91 0.98
3097 3154 4.312443 CAACTAGGGTGTCGTGTTGTAAT 58.688 43.478 0.00 0.00 34.91 1.89
3098 3155 3.719924 CAACTAGGGTGTCGTGTTGTAA 58.280 45.455 0.00 0.00 34.91 2.41
3099 3156 2.546373 GCAACTAGGGTGTCGTGTTGTA 60.546 50.000 0.00 0.00 39.81 2.41
3100 3157 1.808891 GCAACTAGGGTGTCGTGTTGT 60.809 52.381 0.00 0.00 39.81 3.32
3101 3158 0.865769 GCAACTAGGGTGTCGTGTTG 59.134 55.000 0.00 0.00 40.38 3.33
3102 3159 0.756903 AGCAACTAGGGTGTCGTGTT 59.243 50.000 0.00 0.00 0.00 3.32
3103 3160 0.756903 AAGCAACTAGGGTGTCGTGT 59.243 50.000 0.00 0.00 0.00 4.49
3104 3161 1.531149 CAAAGCAACTAGGGTGTCGTG 59.469 52.381 0.00 0.00 0.00 4.35
3105 3162 1.878953 CAAAGCAACTAGGGTGTCGT 58.121 50.000 0.00 0.00 0.00 4.34
3106 3163 0.517316 GCAAAGCAACTAGGGTGTCG 59.483 55.000 0.00 0.00 0.00 4.35
3107 3164 1.897560 AGCAAAGCAACTAGGGTGTC 58.102 50.000 0.00 0.00 0.00 3.67
3108 3165 3.059352 CTAGCAAAGCAACTAGGGTGT 57.941 47.619 0.00 0.00 33.65 4.16
3140 3197 1.365293 AAACTTAAGTAGCCCCCGGT 58.635 50.000 8.92 0.00 0.00 5.28
3184 3241 5.105997 GGTGCTGAGCATTCAAATAGAAGTT 60.106 40.000 11.58 0.00 41.91 2.66
3218 3275 9.642327 AAATTTGTACCCAATAAACCGAAATAC 57.358 29.630 0.00 0.00 0.00 1.89
3362 3419 9.939802 AAGAATACCATTTCTTACTTAACTCGT 57.060 29.630 0.00 0.00 42.63 4.18
3393 3451 6.043411 CCTTATCTGGCTCTGTACAAGTTAC 58.957 44.000 0.00 0.00 0.00 2.50
3726 4795 0.396139 ACCGCAGATTGGCATCCATT 60.396 50.000 0.00 0.00 31.53 3.16
3959 5033 2.443260 TTTTGTAGCTCGGCTCGCCA 62.443 55.000 8.87 0.00 40.44 5.69
3961 5035 1.420312 GTTTTGTAGCTCGGCTCGC 59.580 57.895 1.46 0.00 40.44 5.03
3962 5036 0.389948 AGGTTTTGTAGCTCGGCTCG 60.390 55.000 1.46 0.00 40.44 5.03
3964 5038 0.396811 ACAGGTTTTGTAGCTCGGCT 59.603 50.000 0.00 3.87 43.41 5.52
3965 5039 1.069227 CAACAGGTTTTGTAGCTCGGC 60.069 52.381 0.00 0.00 39.73 5.54
3966 5040 1.069227 GCAACAGGTTTTGTAGCTCGG 60.069 52.381 0.00 0.00 39.73 4.63
3967 5041 1.069227 GGCAACAGGTTTTGTAGCTCG 60.069 52.381 0.00 0.00 39.73 5.03
4174 5367 2.124085 AGGGACGGAATGGACCCA 59.876 61.111 0.00 0.00 44.25 4.51
4287 5480 1.134521 CGGGTGATTCCTCCGATTTGA 60.135 52.381 8.53 0.00 45.96 2.69
4305 5498 2.125912 CGTGAGAGGCTGTTCCGG 60.126 66.667 0.00 0.00 40.77 5.14
4349 5542 0.826715 CGGATCAAGGGAGAGAAGCA 59.173 55.000 0.00 0.00 0.00 3.91
4374 6279 2.759973 AAGGAGATGAGCGGCCGA 60.760 61.111 33.48 8.89 0.00 5.54
4457 6421 2.037772 GACAAAGAGGAGCAGAGGACAA 59.962 50.000 0.00 0.00 0.00 3.18
4488 6452 1.001181 CACCACCTTGAAGCCAATTGG 59.999 52.381 20.81 20.81 39.47 3.16
4501 6465 2.043652 GCCATGCATCCACCACCT 60.044 61.111 0.00 0.00 0.00 4.00
4601 6565 2.359230 GCAAGAACCGCTGCTCCT 60.359 61.111 0.00 0.00 0.00 3.69
4602 6566 3.435186 GGCAAGAACCGCTGCTCC 61.435 66.667 0.00 0.00 0.00 4.70
4603 6567 1.518903 AAAGGCAAGAACCGCTGCTC 61.519 55.000 0.00 0.00 33.69 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.