Multiple sequence alignment - TraesCS3A01G091100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G091100 chr3A 100.000 6852 0 0 1 6852 57803427 57810278 0.000000e+00 12654.0
1 TraesCS3A01G091100 chr3A 84.896 192 26 3 6404 6594 743778675 743778864 2.520000e-44 191.0
2 TraesCS3A01G091100 chr3B 87.134 3552 281 88 772 4185 71812635 71809122 0.000000e+00 3866.0
3 TraesCS3A01G091100 chr3B 88.807 2448 190 45 4434 6841 71808868 71806465 0.000000e+00 2926.0
4 TraesCS3A01G091100 chr3B 80.544 699 68 32 1 661 71813477 71812809 6.220000e-130 475.0
5 TraesCS3A01G091100 chr3B 84.375 352 32 10 23 373 738189837 738190166 2.380000e-84 324.0
6 TraesCS3A01G091100 chr3B 87.817 197 23 1 4173 4368 71809108 71808912 5.350000e-56 230.0
7 TraesCS3A01G091100 chr3B 80.000 195 29 9 6405 6594 425148076 425147887 1.200000e-27 135.0
8 TraesCS3A01G091100 chr3B 89.157 83 4 4 686 767 71812748 71812670 1.570000e-16 99.0
9 TraesCS3A01G091100 chr3D 91.634 2821 168 33 1591 4368 46120715 46123510 0.000000e+00 3840.0
10 TraesCS3A01G091100 chr3D 91.540 1773 74 31 4425 6158 46123532 46125267 0.000000e+00 2374.0
11 TraesCS3A01G091100 chr3D 80.217 829 96 43 772 1563 46119840 46120637 1.670000e-155 560.0
12 TraesCS3A01G091100 chr3D 82.527 641 49 31 36 661 46119063 46119655 7.930000e-139 505.0
13 TraesCS3A01G091100 chr3D 84.733 131 16 3 6187 6317 46125267 46125393 2.010000e-25 128.0
14 TraesCS3A01G091100 chr3D 87.302 63 1 2 686 741 46119706 46119768 1.600000e-06 65.8
15 TraesCS3A01G091100 chr1B 82.808 349 37 9 26 373 23180968 23180642 2.420000e-74 291.0
16 TraesCS3A01G091100 chr5D 84.896 192 28 1 6404 6594 59247277 59247468 7.010000e-45 193.0
17 TraesCS3A01G091100 chr5D 90.323 62 6 0 5218 5279 472275345 472275284 1.580000e-11 82.4
18 TraesCS3A01G091100 chr5D 96.774 31 1 0 4365 4395 506089368 506089398 1.200000e-02 52.8
19 TraesCS3A01G091100 chr2B 83.000 200 26 7 6391 6585 448487215 448487019 2.540000e-39 174.0
20 TraesCS3A01G091100 chr5B 82.353 187 31 2 6409 6594 680999570 680999755 1.980000e-35 161.0
21 TraesCS3A01G091100 chr7D 84.000 175 18 6 6669 6841 4655856 4656022 7.110000e-35 159.0
22 TraesCS3A01G091100 chr7D 95.238 63 3 0 5217 5279 428723344 428723282 4.370000e-17 100.0
23 TraesCS3A01G091100 chr7D 93.548 62 4 0 5218 5279 520411700 520411639 7.320000e-15 93.5
24 TraesCS3A01G091100 chr7D 92.308 39 3 0 4358 4396 414373036 414373074 1.000000e-03 56.5
25 TraesCS3A01G091100 chr2D 82.514 183 20 7 6672 6852 21632884 21632712 4.280000e-32 150.0
26 TraesCS3A01G091100 chr2D 86.538 104 12 2 6673 6775 594658955 594658853 5.620000e-21 113.0
27 TraesCS3A01G091100 chr2D 88.000 50 6 0 4347 4396 23426251 23426300 7.420000e-05 60.2
28 TraesCS3A01G091100 chr1D 80.829 193 35 1 6403 6593 256074479 256074287 4.280000e-32 150.0
29 TraesCS3A01G091100 chr1A 81.250 192 29 5 6406 6594 575199588 575199401 1.540000e-31 148.0
30 TraesCS3A01G091100 chr7A 85.926 135 18 1 6406 6539 592083515 592083381 7.160000e-30 143.0
31 TraesCS3A01G091100 chr7A 100.000 29 0 0 4368 4396 47504446 47504418 3.000000e-03 54.7
32 TraesCS3A01G091100 chr7B 93.651 63 4 0 5217 5279 446152448 446152386 2.030000e-15 95.3
33 TraesCS3A01G091100 chr7B 90.164 61 4 2 5218 5277 512754541 512754482 2.050000e-10 78.7
34 TraesCS3A01G091100 chr6D 85.526 76 11 0 1465 1540 116856885 116856960 5.700000e-11 80.5
35 TraesCS3A01G091100 chr6D 96.875 32 1 0 4365 4396 451106523 451106554 3.000000e-03 54.7
36 TraesCS3A01G091100 chr6A 85.526 76 11 0 1465 1540 145126561 145126636 5.700000e-11 80.5
37 TraesCS3A01G091100 chr4A 92.593 54 4 0 5217 5270 490601968 490601915 2.050000e-10 78.7
38 TraesCS3A01G091100 chr6B 84.211 76 12 0 1465 1540 207105691 207105766 2.650000e-09 75.0
39 TraesCS3A01G091100 chr5A 85.714 70 8 2 5206 5274 469894464 469894532 9.530000e-09 73.1
40 TraesCS3A01G091100 chr4B 94.872 39 2 0 4368 4406 66169509 66169547 2.060000e-05 62.1
41 TraesCS3A01G091100 chr4B 100.000 28 0 0 4369 4396 600919973 600920000 1.200000e-02 52.8
42 TraesCS3A01G091100 chr2A 87.037 54 7 0 4343 4396 25331984 25331931 2.060000e-05 62.1
43 TraesCS3A01G091100 chr2A 97.059 34 1 0 4373 4406 101402042 101402075 2.670000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G091100 chr3A 57803427 57810278 6851 False 12654.000000 12654 100.0000 1 6852 1 chr3A.!!$F1 6851
1 TraesCS3A01G091100 chr3B 71806465 71813477 7012 True 1519.200000 3866 86.6918 1 6841 5 chr3B.!!$R2 6840
2 TraesCS3A01G091100 chr3D 46119063 46125393 6330 False 1245.466667 3840 86.3255 36 6317 6 chr3D.!!$F1 6281

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
949 1147 0.031721 GTGTGGTTCGGTCTTCGTCT 59.968 55.000 0.00 0.00 40.32 4.18 F
1701 2010 0.097674 GGCTGCAATCTGTGTAAGCG 59.902 55.000 0.50 0.00 38.96 4.68 F
1710 2019 0.097674 CTGTGTAAGCGGCTCATTGC 59.902 55.000 1.45 0.00 41.94 3.56 F
1830 2171 0.237235 TGCAGAACAACGCGATTTCC 59.763 50.000 15.93 0.00 0.00 3.13 F
1842 2183 1.226746 CGATTTCCGGCACTATTCCC 58.773 55.000 0.00 0.00 33.91 3.97 F
2334 2678 1.227380 CCCTCCGTGCATGCTCTAC 60.227 63.158 20.33 7.96 0.00 2.59 F
4109 4519 0.769247 ACCCACCTACCTTTCACCAC 59.231 55.000 0.00 0.00 0.00 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2560 2912 0.400237 ATGAGCAGAGCAGAGGGGAT 60.400 55.000 0.00 0.0 0.00 3.85 R
3152 3529 0.107214 GGCACCTAGGCATGTAAGCA 60.107 55.000 9.30 0.0 43.51 3.91 R
3177 3554 4.464069 ACTGCAGCAAAGGTTTTTGTAA 57.536 36.364 15.27 0.0 44.41 2.41 R
3557 3934 4.887071 ACCAACAGCATTGTAGTCTTTCAA 59.113 37.500 0.67 0.0 36.23 2.69 R
3895 4285 1.901591 CATTTGGTGGCAGTCTGAGT 58.098 50.000 3.32 0.0 0.00 3.41 R
4159 4569 0.107456 AGGAGCAATCACCATAGCCG 59.893 55.000 0.00 0.0 0.00 5.52 R
5900 6387 0.030908 CCCGTCTCCTAGTCGAATGC 59.969 60.000 0.00 0.0 0.00 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
88 90 1.613437 GGCAGTAGCACAATTTGGTGT 59.387 47.619 0.78 0.00 44.61 4.16
95 97 1.855513 CACAATTTGGTGTGTGCTGG 58.144 50.000 0.78 0.00 43.26 4.85
96 98 1.136695 CACAATTTGGTGTGTGCTGGT 59.863 47.619 0.78 0.00 43.26 4.00
97 99 2.360483 CACAATTTGGTGTGTGCTGGTA 59.640 45.455 0.78 0.00 43.26 3.25
98 100 2.360801 ACAATTTGGTGTGTGCTGGTAC 59.639 45.455 0.78 0.00 0.00 3.34
99 101 2.622942 CAATTTGGTGTGTGCTGGTACT 59.377 45.455 0.00 0.00 0.00 2.73
100 102 1.961793 TTTGGTGTGTGCTGGTACTC 58.038 50.000 0.00 0.00 0.00 2.59
101 103 0.107831 TTGGTGTGTGCTGGTACTCC 59.892 55.000 0.00 0.00 0.00 3.85
102 104 1.374252 GGTGTGTGCTGGTACTCCG 60.374 63.158 0.00 0.00 36.30 4.63
103 105 1.366366 GTGTGTGCTGGTACTCCGT 59.634 57.895 0.00 0.00 36.30 4.69
104 106 0.249741 GTGTGTGCTGGTACTCCGTT 60.250 55.000 0.00 0.00 36.30 4.44
105 107 0.466543 TGTGTGCTGGTACTCCGTTT 59.533 50.000 0.00 0.00 36.30 3.60
106 108 1.134340 TGTGTGCTGGTACTCCGTTTT 60.134 47.619 0.00 0.00 36.30 2.43
107 109 1.944709 GTGTGCTGGTACTCCGTTTTT 59.055 47.619 0.00 0.00 36.30 1.94
117 119 5.978322 TGGTACTCCGTTTTTATTTGTTTGC 59.022 36.000 0.00 0.00 36.30 3.68
131 133 0.316607 GTTTGCATGCGTCGTTGTGA 60.317 50.000 14.09 0.00 0.00 3.58
157 164 9.736414 ACTTGTGAGTACTAGTAGTAGATTCAA 57.264 33.333 10.38 11.98 40.33 2.69
178 185 7.273188 TCAATGTTAATTTCGTAGACAGACG 57.727 36.000 0.00 0.00 44.29 4.18
188 195 2.342651 CGTAGACAGACGCAACTCAATG 59.657 50.000 0.00 0.00 35.79 2.82
193 202 4.516698 AGACAGACGCAACTCAATGAAAAT 59.483 37.500 0.00 0.00 0.00 1.82
194 203 5.700832 AGACAGACGCAACTCAATGAAAATA 59.299 36.000 0.00 0.00 0.00 1.40
227 236 1.563879 CAGAGAGACAGAGGGAGAGGA 59.436 57.143 0.00 0.00 0.00 3.71
228 237 2.175499 CAGAGAGACAGAGGGAGAGGAT 59.825 54.545 0.00 0.00 0.00 3.24
229 238 2.858768 AGAGAGACAGAGGGAGAGGATT 59.141 50.000 0.00 0.00 0.00 3.01
230 239 2.958355 GAGAGACAGAGGGAGAGGATTG 59.042 54.545 0.00 0.00 0.00 2.67
231 240 2.314549 AGAGACAGAGGGAGAGGATTGT 59.685 50.000 0.00 0.00 0.00 2.71
232 241 2.430332 GAGACAGAGGGAGAGGATTGTG 59.570 54.545 0.00 0.00 0.00 3.33
310 327 1.478654 GCCACTCCACTTTCCTTGGAA 60.479 52.381 0.00 0.00 42.76 3.53
311 328 2.819348 GCCACTCCACTTTCCTTGGAAT 60.819 50.000 2.65 0.00 42.76 3.01
312 329 3.500343 CCACTCCACTTTCCTTGGAATT 58.500 45.455 2.65 0.00 42.76 2.17
381 410 7.051623 TGCAGGGTATAGTTGTTGGTATAAAG 58.948 38.462 0.00 0.00 0.00 1.85
393 422 4.730949 TGGTATAAAGAAGGACTGGACG 57.269 45.455 0.00 0.00 0.00 4.79
425 458 0.508213 GGAACAAAAATGCGTGCTGC 59.492 50.000 0.00 0.00 46.70 5.25
432 465 1.490621 AAATGCGTGCTGCTGTTTTC 58.509 45.000 0.00 0.00 46.63 2.29
440 473 1.543106 GCTGCTGTTTTCGTTGCTGC 61.543 55.000 0.00 0.00 41.49 5.25
451 484 2.595463 TTGCTGCTGGGTGCTGAC 60.595 61.111 0.00 0.00 42.27 3.51
457 490 1.738099 GCTGGGTGCTGACAGTACG 60.738 63.158 16.21 5.35 38.95 3.67
500 544 9.811995 TCTGTCTATGTACACCAACAATTATAC 57.188 33.333 0.00 0.00 32.02 1.47
501 545 8.951787 TGTCTATGTACACCAACAATTATACC 57.048 34.615 0.00 0.00 32.02 2.73
502 546 8.541234 TGTCTATGTACACCAACAATTATACCA 58.459 33.333 0.00 0.00 32.02 3.25
503 547 8.823818 GTCTATGTACACCAACAATTATACCAC 58.176 37.037 0.00 0.00 32.02 4.16
504 548 8.764558 TCTATGTACACCAACAATTATACCACT 58.235 33.333 0.00 0.00 32.02 4.00
526 570 2.040278 AGCTGGTGGAGAGGGGAG 59.960 66.667 0.00 0.00 0.00 4.30
528 572 1.613630 GCTGGTGGAGAGGGGAGAA 60.614 63.158 0.00 0.00 0.00 2.87
529 573 0.985490 GCTGGTGGAGAGGGGAGAAT 60.985 60.000 0.00 0.00 0.00 2.40
530 574 1.692762 GCTGGTGGAGAGGGGAGAATA 60.693 57.143 0.00 0.00 0.00 1.75
531 575 2.043227 CTGGTGGAGAGGGGAGAATAC 58.957 57.143 0.00 0.00 0.00 1.89
532 576 1.364678 TGGTGGAGAGGGGAGAATACA 59.635 52.381 0.00 0.00 0.00 2.29
533 577 1.763545 GGTGGAGAGGGGAGAATACAC 59.236 57.143 0.00 0.00 0.00 2.90
534 578 2.467880 GTGGAGAGGGGAGAATACACA 58.532 52.381 0.00 0.00 0.00 3.72
535 579 3.041946 GTGGAGAGGGGAGAATACACAT 58.958 50.000 0.00 0.00 0.00 3.21
536 580 3.041211 TGGAGAGGGGAGAATACACATG 58.959 50.000 0.00 0.00 0.00 3.21
537 581 2.224402 GGAGAGGGGAGAATACACATGC 60.224 54.545 0.00 0.00 0.00 4.06
538 582 2.435805 GAGAGGGGAGAATACACATGCA 59.564 50.000 0.00 0.00 0.00 3.96
539 583 2.171448 AGAGGGGAGAATACACATGCAC 59.829 50.000 0.00 0.00 0.00 4.57
540 584 1.915489 AGGGGAGAATACACATGCACA 59.085 47.619 0.00 0.00 0.00 4.57
541 585 2.017049 GGGGAGAATACACATGCACAC 58.983 52.381 0.00 0.00 0.00 3.82
542 586 2.617788 GGGGAGAATACACATGCACACA 60.618 50.000 0.00 0.00 0.00 3.72
543 587 2.420022 GGGAGAATACACATGCACACAC 59.580 50.000 0.00 0.00 0.00 3.82
544 588 2.420022 GGAGAATACACATGCACACACC 59.580 50.000 0.00 0.00 0.00 4.16
565 609 0.251787 AAGTGGAAATGGGTGGGAGC 60.252 55.000 0.00 0.00 0.00 4.70
661 724 4.314440 TCCGCACAGCCACAGTCC 62.314 66.667 0.00 0.00 0.00 3.85
663 726 4.969196 CGCACAGCCACAGTCCGT 62.969 66.667 0.00 0.00 0.00 4.69
664 727 3.044305 GCACAGCCACAGTCCGTC 61.044 66.667 0.00 0.00 0.00 4.79
720 825 1.289380 GATCGGTCGATAGGGTGCC 59.711 63.158 5.81 0.00 34.60 5.01
721 826 1.152525 ATCGGTCGATAGGGTGCCT 60.153 57.895 3.86 0.00 37.71 4.75
722 827 1.464376 ATCGGTCGATAGGGTGCCTG 61.464 60.000 3.86 0.00 34.61 4.85
723 828 2.423898 CGGTCGATAGGGTGCCTGT 61.424 63.158 0.00 0.00 34.61 4.00
767 895 3.958860 ACTCCACCAGCCCAGCAC 61.959 66.667 0.00 0.00 0.00 4.40
768 896 4.729918 CTCCACCAGCCCAGCACC 62.730 72.222 0.00 0.00 0.00 5.01
803 964 2.517450 CCTTGCTGCGCGCTAGTAC 61.517 63.158 33.29 16.62 39.43 2.73
861 1029 2.158900 TGATTGATCGCCTTCCTTCTCC 60.159 50.000 0.00 0.00 0.00 3.71
862 1030 1.573108 TTGATCGCCTTCCTTCTCCT 58.427 50.000 0.00 0.00 0.00 3.69
863 1031 1.573108 TGATCGCCTTCCTTCTCCTT 58.427 50.000 0.00 0.00 0.00 3.36
864 1032 1.482593 TGATCGCCTTCCTTCTCCTTC 59.517 52.381 0.00 0.00 0.00 3.46
865 1033 0.833949 ATCGCCTTCCTTCTCCTTCC 59.166 55.000 0.00 0.00 0.00 3.46
866 1034 1.153549 CGCCTTCCTTCTCCTTCCG 60.154 63.158 0.00 0.00 0.00 4.30
867 1035 1.222113 GCCTTCCTTCTCCTTCCGG 59.778 63.158 0.00 0.00 0.00 5.14
868 1036 1.222113 CCTTCCTTCTCCTTCCGGC 59.778 63.158 0.00 0.00 0.00 6.13
869 1037 1.153549 CTTCCTTCTCCTTCCGGCG 60.154 63.158 0.00 0.00 0.00 6.46
870 1038 2.579684 CTTCCTTCTCCTTCCGGCGG 62.580 65.000 22.51 22.51 0.00 6.13
871 1039 4.840005 CCTTCTCCTTCCGGCGGC 62.840 72.222 23.83 0.00 0.00 6.53
933 1131 4.419921 GCGGGGGAATTCCGGTGT 62.420 66.667 18.30 0.00 46.86 4.16
936 1134 2.761160 GGGGAATTCCGGTGTGGT 59.239 61.111 18.30 0.00 39.52 4.16
938 1136 0.963856 GGGGAATTCCGGTGTGGTTC 60.964 60.000 18.30 0.86 39.52 3.62
942 1140 0.604511 AATTCCGGTGTGGTTCGGTC 60.605 55.000 0.00 0.00 45.79 4.79
943 1141 1.477685 ATTCCGGTGTGGTTCGGTCT 61.478 55.000 0.00 0.00 45.79 3.85
944 1142 1.688269 TTCCGGTGTGGTTCGGTCTT 61.688 55.000 0.00 0.00 45.79 3.01
945 1143 1.666872 CCGGTGTGGTTCGGTCTTC 60.667 63.158 0.00 0.00 41.23 2.87
946 1144 2.019951 CGGTGTGGTTCGGTCTTCG 61.020 63.158 0.00 0.00 40.90 3.79
947 1145 1.068585 GGTGTGGTTCGGTCTTCGT 59.931 57.895 0.00 0.00 40.32 3.85
948 1146 0.942884 GGTGTGGTTCGGTCTTCGTC 60.943 60.000 0.00 0.00 40.32 4.20
949 1147 0.031721 GTGTGGTTCGGTCTTCGTCT 59.968 55.000 0.00 0.00 40.32 4.18
950 1148 0.313043 TGTGGTTCGGTCTTCGTCTC 59.687 55.000 0.00 0.00 40.32 3.36
952 1150 1.154073 GGTTCGGTCTTCGTCTCCG 60.154 63.158 0.00 0.00 44.76 4.63
1153 1400 5.661458 CATCAACTACGAAGGTAACCATCT 58.339 41.667 0.00 0.00 37.17 2.90
1163 1410 6.040616 ACGAAGGTAACCATCTTATCGATCTT 59.959 38.462 0.00 0.00 37.17 2.40
1191 1438 1.338200 CCCCCGAGTTTCTCTCAAGTG 60.338 57.143 0.00 0.00 42.88 3.16
1281 1531 0.611896 ACCCCCAATTTGGAGAAGCG 60.612 55.000 17.24 0.00 40.96 4.68
1325 1580 2.743183 GCTTCCTCGCCATAACTGATGT 60.743 50.000 0.00 0.00 33.19 3.06
1326 1581 3.535561 CTTCCTCGCCATAACTGATGTT 58.464 45.455 0.00 0.00 39.98 2.71
1327 1582 3.627395 TCCTCGCCATAACTGATGTTT 57.373 42.857 0.00 0.00 37.59 2.83
1328 1583 3.270027 TCCTCGCCATAACTGATGTTTG 58.730 45.455 0.00 0.00 37.59 2.93
1329 1584 2.223340 CCTCGCCATAACTGATGTTTGC 60.223 50.000 0.00 0.00 37.59 3.68
1331 1586 2.419673 TCGCCATAACTGATGTTTGCTG 59.580 45.455 0.00 0.00 37.59 4.41
1332 1587 2.533266 GCCATAACTGATGTTTGCTGC 58.467 47.619 0.00 0.00 37.59 5.25
1333 1588 2.736400 GCCATAACTGATGTTTGCTGCC 60.736 50.000 0.00 0.00 37.59 4.85
1334 1589 2.492881 CCATAACTGATGTTTGCTGCCA 59.507 45.455 0.00 0.00 37.59 4.92
1335 1590 3.131577 CCATAACTGATGTTTGCTGCCAT 59.868 43.478 0.00 0.00 37.59 4.40
1336 1591 2.736144 AACTGATGTTTGCTGCCATG 57.264 45.000 0.00 0.00 31.37 3.66
1338 1593 1.542915 ACTGATGTTTGCTGCCATGTC 59.457 47.619 0.00 0.00 0.00 3.06
1339 1594 1.816835 CTGATGTTTGCTGCCATGTCT 59.183 47.619 0.00 0.00 0.00 3.41
1340 1595 1.814394 TGATGTTTGCTGCCATGTCTC 59.186 47.619 0.00 0.00 0.00 3.36
1341 1596 1.814394 GATGTTTGCTGCCATGTCTCA 59.186 47.619 0.00 0.00 0.00 3.27
1343 1598 2.030371 TGTTTGCTGCCATGTCTCAAA 58.970 42.857 0.00 0.00 0.00 2.69
1344 1599 2.429971 TGTTTGCTGCCATGTCTCAAAA 59.570 40.909 0.00 0.00 0.00 2.44
1345 1600 3.118847 TGTTTGCTGCCATGTCTCAAAAA 60.119 39.130 0.00 0.00 0.00 1.94
1374 1629 1.070601 GTTTGCTGCTGGGATTTGGTT 59.929 47.619 0.00 0.00 0.00 3.67
1393 1648 3.376546 GGTTAAGCTGAGCCTGAATCTTG 59.623 47.826 0.00 0.00 0.00 3.02
1570 1838 2.465010 TTTGCCCCTCCTCCGGTCTA 62.465 60.000 0.00 0.00 0.00 2.59
1603 1912 3.119459 GCGTCACCAGACTAATCTTCTCA 60.119 47.826 0.00 0.00 42.73 3.27
1604 1913 4.667262 CGTCACCAGACTAATCTTCTCAG 58.333 47.826 0.00 0.00 42.73 3.35
1605 1914 4.439426 CGTCACCAGACTAATCTTCTCAGG 60.439 50.000 0.00 0.00 42.73 3.86
1606 1915 4.464597 GTCACCAGACTAATCTTCTCAGGT 59.535 45.833 0.00 0.00 41.64 4.00
1701 2010 0.097674 GGCTGCAATCTGTGTAAGCG 59.902 55.000 0.50 0.00 38.96 4.68
1702 2011 0.097674 GCTGCAATCTGTGTAAGCGG 59.902 55.000 0.00 0.00 31.94 5.52
1703 2012 0.097674 CTGCAATCTGTGTAAGCGGC 59.902 55.000 0.00 0.00 0.00 6.53
1705 2014 0.375106 GCAATCTGTGTAAGCGGCTC 59.625 55.000 1.45 0.00 0.00 4.70
1706 2015 1.725641 CAATCTGTGTAAGCGGCTCA 58.274 50.000 1.45 0.00 0.00 4.26
1709 2018 1.725641 TCTGTGTAAGCGGCTCATTG 58.274 50.000 1.45 0.00 0.00 2.82
1710 2019 0.097674 CTGTGTAAGCGGCTCATTGC 59.902 55.000 1.45 0.00 41.94 3.56
1712 2021 1.066502 TGTGTAAGCGGCTCATTGCTA 60.067 47.619 1.45 0.00 41.46 3.49
1713 2022 1.594862 GTGTAAGCGGCTCATTGCTAG 59.405 52.381 1.45 0.00 41.46 3.42
1714 2023 1.207089 TGTAAGCGGCTCATTGCTAGT 59.793 47.619 1.45 0.00 41.46 2.57
1715 2024 2.429250 TGTAAGCGGCTCATTGCTAGTA 59.571 45.455 1.45 0.00 41.46 1.82
1754 2091 9.346725 GTTTCTTTGAAAATGTATTGCTCTAGG 57.653 33.333 0.00 0.00 0.00 3.02
1758 2095 7.391148 TTGAAAATGTATTGCTCTAGGTTCC 57.609 36.000 0.00 0.00 0.00 3.62
1762 2099 5.957771 ATGTATTGCTCTAGGTTCCAGAA 57.042 39.130 0.00 0.00 0.00 3.02
1775 2112 8.796475 TCTAGGTTCCAGAAAAATGAAAGATTG 58.204 33.333 0.00 0.00 0.00 2.67
1785 2123 6.515043 AAAATGAAAGATTGCAAGTGTTCG 57.485 33.333 4.94 0.00 0.00 3.95
1786 2124 4.836125 ATGAAAGATTGCAAGTGTTCGT 57.164 36.364 4.94 6.49 0.00 3.85
1787 2125 3.951306 TGAAAGATTGCAAGTGTTCGTG 58.049 40.909 4.94 0.00 0.00 4.35
1788 2126 3.376859 TGAAAGATTGCAAGTGTTCGTGT 59.623 39.130 4.94 0.00 0.00 4.49
1790 2128 4.370364 AAGATTGCAAGTGTTCGTGTTT 57.630 36.364 4.94 0.00 0.00 2.83
1791 2129 5.493133 AAGATTGCAAGTGTTCGTGTTTA 57.507 34.783 4.94 0.00 0.00 2.01
1792 2130 4.844267 AGATTGCAAGTGTTCGTGTTTAC 58.156 39.130 4.94 0.00 0.00 2.01
1794 2132 3.666883 TGCAAGTGTTCGTGTTTACTG 57.333 42.857 0.00 0.00 0.00 2.74
1795 2133 3.004171 TGCAAGTGTTCGTGTTTACTGT 58.996 40.909 0.00 0.00 0.00 3.55
1797 2135 4.083217 TGCAAGTGTTCGTGTTTACTGTTT 60.083 37.500 0.00 0.00 0.00 2.83
1798 2136 4.494410 GCAAGTGTTCGTGTTTACTGTTTC 59.506 41.667 0.00 0.00 0.00 2.78
1830 2171 0.237235 TGCAGAACAACGCGATTTCC 59.763 50.000 15.93 0.00 0.00 3.13
1842 2183 1.226746 CGATTTCCGGCACTATTCCC 58.773 55.000 0.00 0.00 33.91 3.97
1962 2303 7.102346 ACCTCAACTATCTGTGAGATTTCTTG 58.898 38.462 2.28 0.00 36.20 3.02
1963 2304 7.038729 ACCTCAACTATCTGTGAGATTTCTTGA 60.039 37.037 2.28 0.00 36.20 3.02
1973 2314 4.941873 GTGAGATTTCTTGACCCGGTTATT 59.058 41.667 0.00 0.00 0.00 1.40
1974 2315 4.941263 TGAGATTTCTTGACCCGGTTATTG 59.059 41.667 0.00 0.00 0.00 1.90
1975 2316 5.174037 AGATTTCTTGACCCGGTTATTGA 57.826 39.130 0.00 0.00 0.00 2.57
1988 2332 4.035675 CCGGTTATTGAATTTCTCTGCCTC 59.964 45.833 0.00 0.00 0.00 4.70
1989 2333 4.878397 CGGTTATTGAATTTCTCTGCCTCT 59.122 41.667 0.00 0.00 0.00 3.69
1990 2334 5.355350 CGGTTATTGAATTTCTCTGCCTCTT 59.645 40.000 0.00 0.00 0.00 2.85
1991 2335 6.127897 CGGTTATTGAATTTCTCTGCCTCTTT 60.128 38.462 0.00 0.00 0.00 2.52
1992 2336 7.254137 GGTTATTGAATTTCTCTGCCTCTTTC 58.746 38.462 0.00 0.00 0.00 2.62
1996 2340 4.288105 TGAATTTCTCTGCCTCTTTCCTCT 59.712 41.667 0.00 0.00 0.00 3.69
1997 2341 3.692257 TTTCTCTGCCTCTTTCCTCTG 57.308 47.619 0.00 0.00 0.00 3.35
2015 2359 2.979814 TGTGTACACAGCAGTTCACT 57.020 45.000 24.62 0.00 39.58 3.41
2031 2375 3.753294 TCACTCCTTGTCCTCTTGTTC 57.247 47.619 0.00 0.00 0.00 3.18
2145 2489 9.010029 TGTGAATCCCTTAGTTATTCTTGTTTC 57.990 33.333 0.00 0.00 32.12 2.78
2197 2541 4.576463 AGCTCTAATAATTGGCCTGTTTCG 59.424 41.667 3.32 0.00 0.00 3.46
2267 2611 4.100963 TCTGCAAGAACTTTCAGGTGAGTA 59.899 41.667 12.49 0.00 42.31 2.59
2334 2678 1.227380 CCCTCCGTGCATGCTCTAC 60.227 63.158 20.33 7.96 0.00 2.59
2419 2770 3.025978 TGGGAATTCAATGATCTGTGGC 58.974 45.455 7.93 0.00 0.00 5.01
2496 2847 5.047021 CACCAGATGACCTTAAGAGTGAGAA 60.047 44.000 3.36 0.00 0.00 2.87
2569 2921 7.660030 AAATGGTATTGTTTTATCCCCTCTG 57.340 36.000 0.00 0.00 0.00 3.35
2571 2923 4.229582 TGGTATTGTTTTATCCCCTCTGCT 59.770 41.667 0.00 0.00 0.00 4.24
2583 2935 2.289569 CCCCTCTGCTCTGCTCATATTC 60.290 54.545 0.00 0.00 0.00 1.75
2595 2947 6.173339 TCTGCTCATATTCGTTTCCTTTTCT 58.827 36.000 0.00 0.00 0.00 2.52
2634 2986 1.608025 GCCATGTCAAGAAGTCACCGA 60.608 52.381 0.00 0.00 0.00 4.69
2692 3044 1.795872 CGTTTGTCGCTATTGTGGTCA 59.204 47.619 0.00 0.00 0.00 4.02
2771 3123 4.155826 TGGTAATGCTCTTTTCGATGTTGG 59.844 41.667 0.00 0.00 0.00 3.77
2777 3129 2.554032 CTCTTTTCGATGTTGGGCTTGT 59.446 45.455 0.00 0.00 0.00 3.16
2783 3135 3.270027 TCGATGTTGGGCTTGTTCATAG 58.730 45.455 0.00 0.00 0.00 2.23
2788 3140 4.720046 TGTTGGGCTTGTTCATAGTAACA 58.280 39.130 0.00 0.00 37.58 2.41
2847 3223 8.633075 TTTGTTGTGTCAAAGATTGAAGAATC 57.367 30.769 0.00 0.00 42.15 2.52
2948 3325 5.796424 AAATGCTCTTGGTTCATTTGACT 57.204 34.783 0.00 0.00 38.53 3.41
3113 3490 5.948162 AGGCAATCAATCTGTTACAGTTCAT 59.052 36.000 12.41 0.00 32.61 2.57
3134 3511 2.789409 AGGACAGCCACTACCAATTC 57.211 50.000 0.00 0.00 36.29 2.17
3138 3515 3.559171 GGACAGCCACTACCAATTCAGAA 60.559 47.826 0.00 0.00 0.00 3.02
3177 3554 1.930656 ATGCCTAGGTGCCCCTTGT 60.931 57.895 11.31 0.00 42.66 3.16
3499 3876 5.914898 AAAACATATTAGGTGAAGGTGGC 57.085 39.130 0.00 0.00 0.00 5.01
3538 3915 2.414138 GGGTTTCTTACGTGATGGTTCG 59.586 50.000 0.00 0.00 0.00 3.95
3557 3934 6.149633 GGTTCGATTGTTGCTGTTAAAAGAT 58.850 36.000 0.00 0.00 0.00 2.40
3658 4035 2.365617 TCTCCTACGGCTCATTGGATTC 59.634 50.000 0.00 0.00 0.00 2.52
3752 4129 2.026262 GGTTAGTCTCTTTCCCCATGCA 60.026 50.000 0.00 0.00 0.00 3.96
3881 4271 2.797837 CATGGATCCATGTTGGCGT 58.202 52.632 36.88 10.32 46.20 5.68
3886 4276 2.297701 GGATCCATGTTGGCGTATTGT 58.702 47.619 6.95 0.00 37.47 2.71
3888 4278 3.130340 GGATCCATGTTGGCGTATTGTTT 59.870 43.478 6.95 0.00 37.47 2.83
3895 4285 3.628032 TGTTGGCGTATTGTTTCAGTCAA 59.372 39.130 0.00 0.00 0.00 3.18
3919 4309 0.961019 GACTGCCACCAAATGCTCAA 59.039 50.000 0.00 0.00 0.00 3.02
3923 4313 1.068895 TGCCACCAAATGCTCAACTTG 59.931 47.619 0.00 0.00 0.00 3.16
3994 4397 9.528489 TGTTCACCTATAGCATGTCATATAGTA 57.472 33.333 14.96 4.38 32.39 1.82
4057 4461 6.538742 TGAAAGCATTAACTAGGCTCATACAC 59.461 38.462 0.00 0.00 36.76 2.90
4063 4467 7.470147 GCATTAACTAGGCTCATACACAGTCTA 60.470 40.741 0.00 0.00 0.00 2.59
4104 4514 3.819337 GAGTTTTGACCCACCTACCTTTC 59.181 47.826 0.00 0.00 0.00 2.62
4105 4515 3.203487 AGTTTTGACCCACCTACCTTTCA 59.797 43.478 0.00 0.00 0.00 2.69
4107 4517 1.061546 TGACCCACCTACCTTTCACC 58.938 55.000 0.00 0.00 0.00 4.02
4109 4519 0.769247 ACCCACCTACCTTTCACCAC 59.231 55.000 0.00 0.00 0.00 4.16
4126 4536 3.903714 CACCACATATCATCCTGGGTAGA 59.096 47.826 0.00 0.00 0.00 2.59
4130 4540 5.414360 CACATATCATCCTGGGTAGATTCG 58.586 45.833 0.00 0.00 0.00 3.34
4139 4549 2.761208 CTGGGTAGATTCGTCCTTCTGT 59.239 50.000 0.00 0.00 0.00 3.41
4141 4551 3.025262 GGGTAGATTCGTCCTTCTGTCT 58.975 50.000 0.00 0.00 0.00 3.41
4159 4569 1.806542 TCTCGCCATCAAACAAAGCTC 59.193 47.619 0.00 0.00 0.00 4.09
4161 4571 0.454957 CGCCATCAAACAAAGCTCGG 60.455 55.000 0.00 0.00 0.00 4.63
4176 4586 1.506493 CTCGGCTATGGTGATTGCTC 58.494 55.000 0.00 0.00 31.67 4.26
4179 4589 1.602311 GGCTATGGTGATTGCTCCTG 58.398 55.000 0.00 0.00 31.67 3.86
4194 4630 2.224305 GCTCCTGTTGGAAGTACACTGT 60.224 50.000 0.00 0.00 42.66 3.55
4248 4685 9.842775 TTAATTCAAATCATACTCATGCTCTCT 57.157 29.630 0.00 0.00 31.73 3.10
4253 4690 5.710513 ATCATACTCATGCTCTCTGACTC 57.289 43.478 0.00 0.00 31.73 3.36
4257 4694 1.682854 CTCATGCTCTCTGACTCCCTC 59.317 57.143 0.00 0.00 0.00 4.30
4269 4706 8.522542 TCTCTGACTCCCTCTATTTACTTAAC 57.477 38.462 0.00 0.00 0.00 2.01
4271 4708 8.522542 TCTGACTCCCTCTATTTACTTAACTC 57.477 38.462 0.00 0.00 0.00 3.01
4273 4710 8.896722 TGACTCCCTCTATTTACTTAACTCTT 57.103 34.615 0.00 0.00 0.00 2.85
4274 4711 9.322769 TGACTCCCTCTATTTACTTAACTCTTT 57.677 33.333 0.00 0.00 0.00 2.52
4331 4768 4.256110 TGAACTGAGCTATCCACAACATG 58.744 43.478 0.00 0.00 0.00 3.21
4374 4811 6.882610 TGATGAAATGAATTAATCCCTCCG 57.117 37.500 0.00 0.00 0.00 4.63
4375 4812 6.600388 TGATGAAATGAATTAATCCCTCCGA 58.400 36.000 0.00 0.00 0.00 4.55
4376 4813 7.233632 TGATGAAATGAATTAATCCCTCCGAT 58.766 34.615 0.00 0.00 0.00 4.18
4377 4814 7.725397 TGATGAAATGAATTAATCCCTCCGATT 59.275 33.333 0.00 0.00 43.79 3.34
4378 4815 7.510549 TGAAATGAATTAATCCCTCCGATTC 57.489 36.000 0.00 0.00 40.51 2.52
4379 4816 7.059788 TGAAATGAATTAATCCCTCCGATTCA 58.940 34.615 0.00 0.00 40.51 2.57
4380 4817 7.725397 TGAAATGAATTAATCCCTCCGATTCAT 59.275 33.333 4.53 4.53 44.76 2.57
4381 4818 9.231297 GAAATGAATTAATCCCTCCGATTCATA 57.769 33.333 9.48 0.00 43.09 2.15
4382 4819 9.759473 AAATGAATTAATCCCTCCGATTCATAT 57.241 29.630 9.48 0.68 43.09 1.78
4383 4820 9.759473 AATGAATTAATCCCTCCGATTCATATT 57.241 29.630 9.48 0.00 43.09 1.28
4385 4822 9.667107 TGAATTAATCCCTCCGATTCATATTAC 57.333 33.333 0.00 0.00 40.51 1.89
4386 4823 9.892130 GAATTAATCCCTCCGATTCATATTACT 57.108 33.333 0.00 0.00 40.51 2.24
4388 4825 9.672673 ATTAATCCCTCCGATTCATATTACTTG 57.327 33.333 0.00 0.00 40.51 3.16
4389 4826 6.688073 ATCCCTCCGATTCATATTACTTGT 57.312 37.500 0.00 0.00 0.00 3.16
4390 4827 6.097915 TCCCTCCGATTCATATTACTTGTC 57.902 41.667 0.00 0.00 0.00 3.18
4391 4828 4.923871 CCCTCCGATTCATATTACTTGTCG 59.076 45.833 0.00 0.00 0.00 4.35
4392 4829 4.386049 CCTCCGATTCATATTACTTGTCGC 59.614 45.833 0.00 0.00 0.00 5.19
4393 4830 5.196341 TCCGATTCATATTACTTGTCGCT 57.804 39.130 0.00 0.00 0.00 4.93
4394 4831 5.220381 TCCGATTCATATTACTTGTCGCTC 58.780 41.667 0.00 0.00 0.00 5.03
4395 4832 4.982295 CCGATTCATATTACTTGTCGCTCA 59.018 41.667 0.00 0.00 0.00 4.26
4396 4833 5.107837 CCGATTCATATTACTTGTCGCTCAC 60.108 44.000 0.00 0.00 0.00 3.51
4397 4834 5.687730 CGATTCATATTACTTGTCGCTCACT 59.312 40.000 0.00 0.00 0.00 3.41
4398 4835 6.199154 CGATTCATATTACTTGTCGCTCACTT 59.801 38.462 0.00 0.00 0.00 3.16
4399 4836 7.378728 CGATTCATATTACTTGTCGCTCACTTA 59.621 37.037 0.00 0.00 0.00 2.24
4400 4837 7.987268 TTCATATTACTTGTCGCTCACTTAG 57.013 36.000 0.00 0.00 0.00 2.18
4401 4838 7.096884 TCATATTACTTGTCGCTCACTTAGT 57.903 36.000 0.00 0.00 0.00 2.24
4402 4839 8.217131 TCATATTACTTGTCGCTCACTTAGTA 57.783 34.615 0.00 0.00 0.00 1.82
4403 4840 8.127327 TCATATTACTTGTCGCTCACTTAGTAC 58.873 37.037 0.00 0.00 0.00 2.73
4404 4841 5.694231 TTACTTGTCGCTCACTTAGTACA 57.306 39.130 0.00 0.00 0.00 2.90
4405 4842 4.579454 ACTTGTCGCTCACTTAGTACAA 57.421 40.909 0.00 0.00 34.27 2.41
4406 4843 4.940463 ACTTGTCGCTCACTTAGTACAAA 58.060 39.130 0.00 0.00 34.72 2.83
4407 4844 5.353938 ACTTGTCGCTCACTTAGTACAAAA 58.646 37.500 0.00 0.00 34.72 2.44
4408 4845 5.989777 ACTTGTCGCTCACTTAGTACAAAAT 59.010 36.000 0.00 0.00 34.72 1.82
4412 4849 8.367943 TGTCGCTCACTTAGTACAAAATAAAA 57.632 30.769 0.00 0.00 0.00 1.52
4439 4882 3.054139 AGCCATCTTATGACAGCTTTCCA 60.054 43.478 0.00 0.00 32.09 3.53
4602 5064 2.429610 AGGGCTGCTTTATTTGCATGAG 59.570 45.455 0.00 0.00 39.86 2.90
4683 5145 6.767456 TGAATATTTTGAAGCAATTGTGGGT 58.233 32.000 7.40 0.00 0.00 4.51
4704 5166 2.293122 TGATTTCGGACTGGCAAAACTG 59.707 45.455 0.00 0.00 0.00 3.16
4734 5196 1.909302 CAGGAGACCCATGTTACCACT 59.091 52.381 0.00 0.00 33.88 4.00
4755 5217 3.993584 GTGCGTGGTACCGTGGGA 61.994 66.667 7.57 0.00 0.00 4.37
4821 5283 2.035832 GACAGATGTGTTTGGGTTTGGG 59.964 50.000 0.00 0.00 36.88 4.12
4875 5337 6.428385 AAAGCATTAGATTTCGGAAGACTG 57.572 37.500 8.34 0.00 41.84 3.51
4926 5388 6.838198 TTGGTAAGCATGTTATATCGTGTC 57.162 37.500 0.00 0.00 0.00 3.67
4932 5394 4.745125 AGCATGTTATATCGTGTCCTTTCG 59.255 41.667 0.00 0.00 0.00 3.46
4990 5452 3.564225 TGAAAAGACCGCTTTCTCCTTTC 59.436 43.478 0.00 1.15 43.32 2.62
4991 5453 2.186532 AAGACCGCTTTCTCCTTTCC 57.813 50.000 0.00 0.00 0.00 3.13
4993 5455 1.630878 AGACCGCTTTCTCCTTTCCAT 59.369 47.619 0.00 0.00 0.00 3.41
4995 5457 2.420372 GACCGCTTTCTCCTTTCCATTC 59.580 50.000 0.00 0.00 0.00 2.67
5002 5464 5.617973 GCTTTCTCCTTTCCATTCGAGTTTC 60.618 44.000 0.00 0.00 0.00 2.78
5007 5469 3.994392 CCTTTCCATTCGAGTTTCTTCGA 59.006 43.478 0.00 0.00 46.86 3.71
5024 5486 4.625742 TCTTCGATTCTCGCCTTTAGTTTG 59.374 41.667 0.00 0.00 40.21 2.93
5033 5495 3.070446 TCGCCTTTAGTTTGGTCTCTTCA 59.930 43.478 0.00 0.00 0.00 3.02
5050 5512 5.009710 TCTCTTCAGAGCTTTTCGACAACTA 59.990 40.000 0.00 0.00 41.80 2.24
5067 5529 6.345920 ACAACTATGTATGTCGCTTTTAGC 57.654 37.500 0.00 0.00 38.24 3.09
5098 5560 5.302360 TCGCCTTTTACATTGAGTACACTT 58.698 37.500 0.00 0.00 30.91 3.16
5159 5621 2.093394 TGCAAAAATGATGCCATCCCTG 60.093 45.455 1.49 0.00 43.16 4.45
5226 5688 5.304614 TGTCAGCATATTAACTACTCCCTCC 59.695 44.000 0.00 0.00 0.00 4.30
5234 5696 5.649782 TTAACTACTCCCTCCGTAAACTG 57.350 43.478 0.00 0.00 0.00 3.16
5274 5736 8.880991 AGATCACTACTTTAGTTTACAGAGGA 57.119 34.615 0.00 0.00 36.76 3.71
5323 5785 6.201806 CACCTTCTGTTTAGAGTTCAGACTTG 59.798 42.308 0.00 0.00 37.84 3.16
5332 5794 3.964031 AGAGTTCAGACTTGAGACCACTT 59.036 43.478 0.00 0.00 35.88 3.16
5355 5817 8.576442 ACTTGTCAAAATAAGTATTCAAGGGTG 58.424 33.333 11.72 0.00 35.33 4.61
5358 5820 7.175990 TGTCAAAATAAGTATTCAAGGGTGGTC 59.824 37.037 0.00 0.00 0.00 4.02
5362 5824 6.893020 ATAAGTATTCAAGGGTGGTCTCTT 57.107 37.500 0.00 0.00 0.00 2.85
5390 5852 8.598916 TCTTAGTGGTGTATACATTTTGAAGGA 58.401 33.333 9.18 0.13 0.00 3.36
5410 5872 8.980596 TGAAGGATGCCAATACAAAGAAATATT 58.019 29.630 0.00 0.00 0.00 1.28
5484 5956 2.822764 ACGAAGAGATATTTCACGGGC 58.177 47.619 13.87 0.00 0.00 6.13
5491 5963 3.139077 AGATATTTCACGGGCGGAAATC 58.861 45.455 11.88 3.31 42.35 2.17
5698 6179 1.599240 GATCCGGATGCTGGAAGGC 60.599 63.158 24.82 0.00 42.74 4.35
5794 6275 0.787787 TGAAGTTCACCGATTTCGCG 59.212 50.000 0.00 0.00 38.18 5.87
5859 6346 3.310860 GACCAAGGTGACCGGCGAT 62.311 63.158 9.30 0.00 0.00 4.58
5861 6348 2.511600 CAAGGTGACCGGCGATCC 60.512 66.667 9.30 4.94 0.00 3.36
5885 6372 0.506080 GATCGCGTAGATGCTTGCTG 59.494 55.000 5.77 0.00 40.26 4.41
5886 6373 0.179100 ATCGCGTAGATGCTTGCTGT 60.179 50.000 5.77 0.00 38.36 4.40
5889 6376 0.522076 GCGTAGATGCTTGCTGTTGC 60.522 55.000 0.00 0.00 40.20 4.17
5892 6379 1.131883 GTAGATGCTTGCTGTTGCCTG 59.868 52.381 0.00 0.00 38.71 4.85
5893 6380 1.214589 GATGCTTGCTGTTGCCTGG 59.785 57.895 0.00 0.00 38.71 4.45
5898 6385 0.896940 CTTGCTGTTGCCTGGATGGT 60.897 55.000 0.00 0.00 38.71 3.55
5900 6387 2.401766 GCTGTTGCCTGGATGGTCG 61.402 63.158 0.00 0.00 38.35 4.79
5901 6388 2.359850 TGTTGCCTGGATGGTCGC 60.360 61.111 0.00 0.00 38.35 5.19
5902 6389 2.359850 GTTGCCTGGATGGTCGCA 60.360 61.111 0.00 0.00 38.35 5.10
5903 6390 1.750399 GTTGCCTGGATGGTCGCAT 60.750 57.895 0.00 0.00 38.35 4.73
5904 6391 1.001020 TTGCCTGGATGGTCGCATT 60.001 52.632 0.00 0.00 38.35 3.56
5905 6392 1.031571 TTGCCTGGATGGTCGCATTC 61.032 55.000 0.00 0.00 38.35 2.67
5906 6393 2.537560 GCCTGGATGGTCGCATTCG 61.538 63.158 0.00 0.00 38.35 3.34
5907 6394 1.143838 CCTGGATGGTCGCATTCGA 59.856 57.895 0.00 0.00 43.28 3.71
5917 6404 0.656259 TCGCATTCGACTAGGAGACG 59.344 55.000 0.00 0.00 40.21 4.18
5921 6408 1.108132 ATTCGACTAGGAGACGGGGC 61.108 60.000 0.00 0.00 34.36 5.80
5922 6409 2.439701 CGACTAGGAGACGGGGCA 60.440 66.667 0.00 0.00 30.21 5.36
5924 6411 1.601419 CGACTAGGAGACGGGGCAAA 61.601 60.000 0.00 0.00 30.21 3.68
5987 6488 3.711863 AGGTGGTGGCATTCATTTGTAT 58.288 40.909 0.00 0.00 0.00 2.29
6001 6502 6.361768 TCATTTGTATATACGGGCATGGTA 57.638 37.500 8.33 0.00 0.00 3.25
6002 6503 6.953101 TCATTTGTATATACGGGCATGGTAT 58.047 36.000 8.33 0.00 35.01 2.73
6003 6504 7.045416 TCATTTGTATATACGGGCATGGTATC 58.955 38.462 8.33 0.00 33.00 2.24
6004 6505 4.642445 TGTATATACGGGCATGGTATCG 57.358 45.455 8.33 0.00 33.00 2.92
6005 6506 4.018490 TGTATATACGGGCATGGTATCGT 58.982 43.478 8.33 0.00 39.30 3.73
6006 6507 3.520290 ATATACGGGCATGGTATCGTG 57.480 47.619 0.00 0.00 37.10 4.35
6007 6508 1.045407 ATACGGGCATGGTATCGTGT 58.955 50.000 0.00 0.00 37.10 4.49
6008 6509 1.689984 TACGGGCATGGTATCGTGTA 58.310 50.000 0.00 0.00 37.10 2.90
6009 6510 1.045407 ACGGGCATGGTATCGTGTAT 58.955 50.000 0.00 0.00 34.40 2.29
6013 6514 3.211045 GGGCATGGTATCGTGTATTTGT 58.789 45.455 0.00 0.00 32.65 2.83
6021 6522 4.267928 GGTATCGTGTATTTGTGTGAGCTC 59.732 45.833 6.82 6.82 0.00 4.09
6024 6525 2.413112 CGTGTATTTGTGTGAGCTCAGG 59.587 50.000 18.89 0.00 0.00 3.86
6060 6561 3.243873 GCTGCTCATGTACATGTAGGCTA 60.244 47.826 30.03 20.40 39.72 3.93
6061 6562 4.740634 GCTGCTCATGTACATGTAGGCTAA 60.741 45.833 30.03 17.69 39.72 3.09
6062 6563 4.948847 TGCTCATGTACATGTAGGCTAAG 58.051 43.478 30.03 20.51 39.72 2.18
6063 6564 4.649218 TGCTCATGTACATGTAGGCTAAGA 59.351 41.667 30.03 15.96 39.72 2.10
6064 6565 5.221322 TGCTCATGTACATGTAGGCTAAGAG 60.221 44.000 30.03 19.30 39.72 2.85
6065 6566 5.010112 GCTCATGTACATGTAGGCTAAGAGA 59.990 44.000 30.03 9.86 39.72 3.10
6066 6567 6.641169 TCATGTACATGTAGGCTAAGAGAG 57.359 41.667 30.03 4.94 39.72 3.20
6073 6574 6.191315 ACATGTAGGCTAAGAGAGAAGAGAA 58.809 40.000 0.00 0.00 0.00 2.87
6085 6588 6.125029 AGAGAGAAGAGAAGAGAAGAGATGG 58.875 44.000 0.00 0.00 0.00 3.51
6105 6608 9.646427 GAGATGGGATGAGTTGAGTAAATATAC 57.354 37.037 0.00 0.00 0.00 1.47
6106 6609 9.159254 AGATGGGATGAGTTGAGTAAATATACA 57.841 33.333 0.00 0.00 34.29 2.29
6107 6610 9.429359 GATGGGATGAGTTGAGTAAATATACAG 57.571 37.037 0.00 0.00 34.29 2.74
6108 6611 8.319057 TGGGATGAGTTGAGTAAATATACAGT 57.681 34.615 0.00 0.00 34.29 3.55
6109 6612 9.429109 TGGGATGAGTTGAGTAAATATACAGTA 57.571 33.333 0.00 0.00 34.29 2.74
6175 6678 1.342174 CTTGTTTGTCAGGCCTTGCAT 59.658 47.619 0.00 0.00 0.00 3.96
6179 6682 1.766494 TTGTCAGGCCTTGCATATGG 58.234 50.000 0.00 0.00 0.00 2.74
6181 6684 1.027357 GTCAGGCCTTGCATATGGTG 58.973 55.000 0.00 0.00 0.00 4.17
6193 6699 7.450074 CCTTGCATATGGTGGTTATCTTACTA 58.550 38.462 4.56 0.00 0.00 1.82
6209 6715 9.640963 TTATCTTACTACTCTGTTTGAAAGCTC 57.359 33.333 0.00 0.00 0.00 4.09
6246 6752 2.094675 CAAGTTTCGCTGGAATCCCAT 58.905 47.619 0.00 0.00 42.59 4.00
6249 6755 1.597663 GTTTCGCTGGAATCCCATACG 59.402 52.381 0.00 0.00 42.59 3.06
6250 6756 0.531974 TTCGCTGGAATCCCATACGC 60.532 55.000 0.00 0.00 42.59 4.42
6262 6768 4.223556 TCCCATACGCATTTTGGTTCTA 57.776 40.909 0.00 0.00 0.00 2.10
6328 6834 4.963373 TCTAAAACTGACGGAATGGTTGA 58.037 39.130 0.00 0.00 0.00 3.18
6334 6840 0.036388 GACGGAATGGTTGAGAGGCA 60.036 55.000 0.00 0.00 0.00 4.75
6337 6843 1.741732 CGGAATGGTTGAGAGGCAGAG 60.742 57.143 0.00 0.00 0.00 3.35
6343 6849 0.109039 GTTGAGAGGCAGAGACGGAC 60.109 60.000 0.00 0.00 0.00 4.79
6344 6850 0.539669 TTGAGAGGCAGAGACGGACA 60.540 55.000 0.00 0.00 0.00 4.02
6347 6853 0.820871 AGAGGCAGAGACGGACATTC 59.179 55.000 0.00 0.00 0.00 2.67
6359 6865 2.027100 ACGGACATTCTTTCTTCCTCCC 60.027 50.000 0.00 0.00 0.00 4.30
6361 6867 2.027100 GGACATTCTTTCTTCCTCCCGT 60.027 50.000 0.00 0.00 0.00 5.28
6364 6870 4.470602 ACATTCTTTCTTCCTCCCGTTTT 58.529 39.130 0.00 0.00 0.00 2.43
6381 6887 3.292426 TTGCCTTGCAATGCACAAG 57.708 47.368 26.20 3.29 43.99 3.16
6396 6902 0.820891 ACAAGGAAGGTGCTGCACTG 60.821 55.000 29.54 21.10 34.40 3.66
6398 6904 0.536006 AAGGAAGGTGCTGCACTGTC 60.536 55.000 29.54 24.46 34.40 3.51
6419 6925 7.074653 TGTCTGTAAAACTAGGTGATTTCCT 57.925 36.000 0.00 0.00 41.20 3.36
6432 6938 0.242017 ATTTCCTCACGCTTTGCTGC 59.758 50.000 0.00 0.00 0.00 5.25
6433 6939 1.795170 TTTCCTCACGCTTTGCTGCC 61.795 55.000 0.00 0.00 0.00 4.85
6448 6954 5.906113 TTGCTGCCGGATTTTAAAGATTA 57.094 34.783 5.05 0.00 0.00 1.75
6544 7050 4.099419 ACGGAGAGTATGCATGTACAATGA 59.901 41.667 10.16 0.00 0.00 2.57
6546 7052 5.698089 CGGAGAGTATGCATGTACAATGAAT 59.302 40.000 10.16 1.99 0.00 2.57
6558 7064 9.955208 GCATGTACAATGAATCATTAGAAATGA 57.045 29.630 17.16 4.90 32.35 2.57
6579 7085 9.585369 AAATGAAACAATTAAATTGGGGAATGT 57.415 25.926 0.00 0.00 44.42 2.71
6582 7088 9.664332 TGAAACAATTAAATTGGGGAATGTATG 57.336 29.630 0.00 0.00 44.42 2.39
6584 7090 9.447157 AAACAATTAAATTGGGGAATGTATGTG 57.553 29.630 0.00 0.00 44.42 3.21
6585 7091 7.047271 ACAATTAAATTGGGGAATGTATGTGC 58.953 34.615 0.00 0.00 44.42 4.57
6586 7092 7.092935 ACAATTAAATTGGGGAATGTATGTGCT 60.093 33.333 0.00 0.00 44.42 4.40
6587 7093 8.420222 CAATTAAATTGGGGAATGTATGTGCTA 58.580 33.333 0.00 0.00 36.63 3.49
6588 7094 5.852282 AAATTGGGGAATGTATGTGCTAC 57.148 39.130 0.00 0.00 0.00 3.58
6589 7095 4.518278 ATTGGGGAATGTATGTGCTACA 57.482 40.909 0.00 0.00 44.29 2.74
6591 7097 4.308526 TGGGGAATGTATGTGCTACAAA 57.691 40.909 0.00 0.00 43.42 2.83
6594 7100 5.359576 TGGGGAATGTATGTGCTACAAAATC 59.640 40.000 0.00 0.00 43.42 2.17
6595 7101 5.359576 GGGGAATGTATGTGCTACAAAATCA 59.640 40.000 0.00 0.00 43.42 2.57
6596 7102 6.265577 GGGAATGTATGTGCTACAAAATCAC 58.734 40.000 0.00 0.00 43.42 3.06
6597 7103 6.127758 GGGAATGTATGTGCTACAAAATCACA 60.128 38.462 0.00 0.00 43.42 3.58
6599 7105 7.975616 GGAATGTATGTGCTACAAAATCACATT 59.024 33.333 11.58 0.00 45.86 2.71
6600 7106 9.357652 GAATGTATGTGCTACAAAATCACATTT 57.642 29.630 11.58 2.04 45.86 2.32
6601 7107 8.692110 ATGTATGTGCTACAAAATCACATTTG 57.308 30.769 11.58 0.00 45.86 2.32
6602 7108 7.880105 TGTATGTGCTACAAAATCACATTTGA 58.120 30.769 11.58 0.00 45.86 2.69
6603 7109 8.522003 TGTATGTGCTACAAAATCACATTTGAT 58.478 29.630 11.58 0.00 45.86 2.57
6604 7110 7.821595 ATGTGCTACAAAATCACATTTGATG 57.178 32.000 6.76 0.00 45.86 3.07
6605 7111 6.979465 TGTGCTACAAAATCACATTTGATGA 58.021 32.000 6.76 0.00 42.00 2.92
6606 7112 6.862608 TGTGCTACAAAATCACATTTGATGAC 59.137 34.615 6.76 0.03 42.00 3.06
6607 7113 6.032775 GTGCTACAAAATCACATTTGATGACG 59.967 38.462 6.76 0.00 42.00 4.35
6608 7114 6.086222 GCTACAAAATCACATTTGATGACGT 58.914 36.000 6.76 0.00 42.00 4.34
6609 7115 6.032775 GCTACAAAATCACATTTGATGACGTG 59.967 38.462 0.00 0.00 42.00 4.49
6610 7116 6.070897 ACAAAATCACATTTGATGACGTGA 57.929 33.333 0.00 0.00 42.00 4.35
6611 7117 6.502652 ACAAAATCACATTTGATGACGTGAA 58.497 32.000 0.00 0.00 42.00 3.18
6612 7118 7.147312 ACAAAATCACATTTGATGACGTGAAT 58.853 30.769 0.00 0.00 42.00 2.57
6623 7129 1.952990 TGACGTGAATGGTTGCATGTT 59.047 42.857 0.00 0.00 34.61 2.71
6659 7165 6.684613 GCGTTAGTGGGGATCAACTATTTAGA 60.685 42.308 0.00 0.00 0.00 2.10
6698 7204 5.945310 AGGATTTTCTATCATAGCTTGCCA 58.055 37.500 0.00 0.00 0.00 4.92
6699 7205 5.767168 AGGATTTTCTATCATAGCTTGCCAC 59.233 40.000 0.00 0.00 0.00 5.01
6701 7207 6.039717 GGATTTTCTATCATAGCTTGCCACAA 59.960 38.462 0.00 0.00 0.00 3.33
6704 7210 7.408756 TTTCTATCATAGCTTGCCACAAAAT 57.591 32.000 0.00 0.00 0.00 1.82
6712 7218 8.580720 TCATAGCTTGCCACAAAATTAGTTAAA 58.419 29.630 0.00 0.00 0.00 1.52
6714 7220 6.816136 AGCTTGCCACAAAATTAGTTAAAGT 58.184 32.000 0.00 0.00 0.00 2.66
6721 7227 9.697250 GCCACAAAATTAGTTAAAGTTTTCAAC 57.303 29.630 0.00 0.00 33.29 3.18
6728 7234 9.940166 AATTAGTTAAAGTTTTCAACGGTGTAG 57.060 29.630 0.00 0.00 36.23 2.74
6734 7240 5.729974 AGTTTTCAACGGTGTAGAAGTTC 57.270 39.130 0.00 0.00 36.23 3.01
6735 7241 4.573607 AGTTTTCAACGGTGTAGAAGTTCC 59.426 41.667 0.00 0.00 36.23 3.62
6736 7242 3.823281 TTCAACGGTGTAGAAGTTCCA 57.177 42.857 0.00 0.00 0.00 3.53
6741 7247 5.591067 TCAACGGTGTAGAAGTTCCAAAAAT 59.409 36.000 0.00 0.00 0.00 1.82
6742 7248 5.684550 ACGGTGTAGAAGTTCCAAAAATC 57.315 39.130 0.00 0.00 0.00 2.17
6744 7250 4.760204 CGGTGTAGAAGTTCCAAAAATCCT 59.240 41.667 0.00 0.00 0.00 3.24
6745 7251 5.106673 CGGTGTAGAAGTTCCAAAAATCCTC 60.107 44.000 0.00 0.00 0.00 3.71
6752 7258 8.078060 AGAAGTTCCAAAAATCCTCAAAAAGA 57.922 30.769 0.00 0.00 0.00 2.52
6754 7260 8.893219 AAGTTCCAAAAATCCTCAAAAAGATC 57.107 30.769 0.00 0.00 0.00 2.75
6757 7263 8.585018 GTTCCAAAAATCCTCAAAAAGATCCTA 58.415 33.333 0.00 0.00 0.00 2.94
6767 7273 7.340743 TCCTCAAAAAGATCCTAAAACAACACA 59.659 33.333 0.00 0.00 0.00 3.72
6768 7274 8.143835 CCTCAAAAAGATCCTAAAACAACACAT 58.856 33.333 0.00 0.00 0.00 3.21
6771 7277 8.971321 CAAAAAGATCCTAAAACAACACATCTG 58.029 33.333 0.00 0.00 0.00 2.90
6775 7281 8.324163 AGATCCTAAAACAACACATCTGTAAC 57.676 34.615 0.00 0.00 0.00 2.50
6787 7293 7.792374 ACACATCTGTAACATAACATGATCC 57.208 36.000 0.00 0.00 0.00 3.36
6792 7298 5.815222 TCTGTAACATAACATGATCCAACGG 59.185 40.000 0.00 0.00 0.00 4.44
6793 7299 4.878971 TGTAACATAACATGATCCAACGGG 59.121 41.667 0.00 0.00 0.00 5.28
6794 7300 2.297701 ACATAACATGATCCAACGGGC 58.702 47.619 0.00 0.00 0.00 6.13
6795 7301 1.264020 CATAACATGATCCAACGGGCG 59.736 52.381 0.00 0.00 0.00 6.13
6796 7302 0.537653 TAACATGATCCAACGGGCGA 59.462 50.000 0.00 0.00 0.00 5.54
6797 7303 0.107214 AACATGATCCAACGGGCGAT 60.107 50.000 0.00 0.00 0.00 4.58
6799 7305 0.308684 CATGATCCAACGGGCGATTG 59.691 55.000 0.00 0.00 0.00 2.67
6800 7306 0.180171 ATGATCCAACGGGCGATTGA 59.820 50.000 1.26 0.00 0.00 2.57
6801 7307 0.035915 TGATCCAACGGGCGATTGAA 60.036 50.000 1.26 0.00 0.00 2.69
6802 7308 1.091537 GATCCAACGGGCGATTGAAA 58.908 50.000 1.26 0.00 0.00 2.69
6835 7341 7.801716 ACAGCTTTATGTGTTCTAGACAAAA 57.198 32.000 0.00 0.00 40.65 2.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 4.171103 AATGCCCCGCCGGAGTAC 62.171 66.667 5.05 0.00 0.00 2.73
88 90 2.335316 AAAAACGGAGTACCAGCACA 57.665 45.000 0.00 0.00 45.00 4.57
89 91 5.151389 CAAATAAAAACGGAGTACCAGCAC 58.849 41.667 0.00 0.00 45.00 4.40
90 92 4.822896 ACAAATAAAAACGGAGTACCAGCA 59.177 37.500 0.00 0.00 45.00 4.41
92 94 6.143278 GCAAACAAATAAAAACGGAGTACCAG 59.857 38.462 0.00 0.00 45.00 4.00
93 95 5.978322 GCAAACAAATAAAAACGGAGTACCA 59.022 36.000 0.00 0.00 45.00 3.25
94 96 5.978322 TGCAAACAAATAAAAACGGAGTACC 59.022 36.000 0.00 0.00 45.00 3.34
95 97 7.498225 CATGCAAACAAATAAAAACGGAGTAC 58.502 34.615 0.00 0.00 45.00 2.73
96 98 6.144724 GCATGCAAACAAATAAAAACGGAGTA 59.855 34.615 14.21 0.00 45.00 2.59
98 100 5.373262 GCATGCAAACAAATAAAAACGGAG 58.627 37.500 14.21 0.00 0.00 4.63
99 101 4.084849 CGCATGCAAACAAATAAAAACGGA 60.085 37.500 19.57 0.00 0.00 4.69
100 102 4.140247 CGCATGCAAACAAATAAAAACGG 58.860 39.130 19.57 0.00 0.00 4.44
101 103 4.756444 ACGCATGCAAACAAATAAAAACG 58.244 34.783 19.57 0.00 0.00 3.60
102 104 4.832829 CGACGCATGCAAACAAATAAAAAC 59.167 37.500 19.57 0.00 0.00 2.43
103 105 4.504461 ACGACGCATGCAAACAAATAAAAA 59.496 33.333 19.57 0.00 0.00 1.94
104 106 4.045104 ACGACGCATGCAAACAAATAAAA 58.955 34.783 19.57 0.00 0.00 1.52
105 107 3.633235 ACGACGCATGCAAACAAATAAA 58.367 36.364 19.57 0.00 0.00 1.40
106 108 3.275400 ACGACGCATGCAAACAAATAA 57.725 38.095 19.57 0.00 0.00 1.40
107 109 2.976509 CAACGACGCATGCAAACAAATA 59.023 40.909 19.57 0.00 0.00 1.40
131 133 9.736414 TTGAATCTACTACTAGTACTCACAAGT 57.264 33.333 0.00 0.00 39.66 3.16
157 164 5.165676 TGCGTCTGTCTACGAAATTAACAT 58.834 37.500 0.00 0.00 45.68 2.71
167 174 2.046283 TTGAGTTGCGTCTGTCTACG 57.954 50.000 0.00 0.00 45.58 3.51
194 203 8.302438 CCTCTGTCTCTCTGCATTTTTATTTTT 58.698 33.333 0.00 0.00 0.00 1.94
207 216 1.563879 TCCTCTCCCTCTGTCTCTCTG 59.436 57.143 0.00 0.00 0.00 3.35
211 220 2.430332 CACAATCCTCTCCCTCTGTCTC 59.570 54.545 0.00 0.00 0.00 3.36
214 223 2.183679 GTCACAATCCTCTCCCTCTGT 58.816 52.381 0.00 0.00 0.00 3.41
232 241 1.364171 CGAGATGATGACCCCGGTC 59.636 63.158 6.95 6.95 44.77 4.79
279 296 2.388232 GGAGTGGCTTTGCGTACCG 61.388 63.158 0.00 0.00 0.00 4.02
381 410 2.003301 GATTTGCTCGTCCAGTCCTTC 58.997 52.381 0.00 0.00 0.00 3.46
393 422 1.821216 TTGTTCCTCCGGATTTGCTC 58.179 50.000 3.57 0.00 0.00 4.26
408 437 1.210870 CAGCAGCACGCATTTTTGTT 58.789 45.000 0.00 0.00 46.13 2.83
425 458 0.318107 CCCAGCAGCAACGAAAACAG 60.318 55.000 0.00 0.00 0.00 3.16
440 473 1.079819 CCGTACTGTCAGCACCCAG 60.080 63.158 0.00 0.00 34.82 4.45
451 484 7.905859 GACAGCGTCATACAGTACCGTACTG 62.906 52.000 29.32 29.32 45.22 2.74
457 490 2.163815 ACAGACAGCGTCATACAGTACC 59.836 50.000 10.52 0.00 34.60 3.34
469 502 2.163613 TGGTGTACATAGACAGACAGCG 59.836 50.000 0.00 0.00 41.93 5.18
500 544 1.915266 TCCACCAGCTGGAGAGTGG 60.915 63.158 39.19 32.21 44.99 4.00
501 545 3.797331 TCCACCAGCTGGAGAGTG 58.203 61.111 39.19 25.12 44.99 3.51
522 566 2.420022 GTGTGTGCATGTGTATTCTCCC 59.580 50.000 0.00 0.00 0.00 4.30
523 567 2.420022 GGTGTGTGCATGTGTATTCTCC 59.580 50.000 0.00 0.00 0.00 3.71
524 568 2.094258 CGGTGTGTGCATGTGTATTCTC 59.906 50.000 0.00 0.00 0.00 2.87
526 570 2.073056 TCGGTGTGTGCATGTGTATTC 58.927 47.619 0.00 0.00 0.00 1.75
528 572 2.076100 CTTCGGTGTGTGCATGTGTAT 58.924 47.619 0.00 0.00 0.00 2.29
529 573 1.202592 ACTTCGGTGTGTGCATGTGTA 60.203 47.619 0.00 0.00 0.00 2.90
530 574 0.463654 ACTTCGGTGTGTGCATGTGT 60.464 50.000 0.00 0.00 0.00 3.72
531 575 0.041047 CACTTCGGTGTGTGCATGTG 60.041 55.000 0.00 0.00 40.78 3.21
532 576 1.165907 CCACTTCGGTGTGTGCATGT 61.166 55.000 0.00 0.00 43.91 3.21
533 577 0.884259 TCCACTTCGGTGTGTGCATG 60.884 55.000 0.00 0.00 43.91 4.06
534 578 0.179032 TTCCACTTCGGTGTGTGCAT 60.179 50.000 0.00 0.00 43.91 3.96
535 579 0.393132 TTTCCACTTCGGTGTGTGCA 60.393 50.000 7.66 0.00 43.91 4.57
536 580 0.951558 ATTTCCACTTCGGTGTGTGC 59.048 50.000 7.66 0.00 43.91 4.57
537 581 1.266718 CCATTTCCACTTCGGTGTGTG 59.733 52.381 7.66 0.00 43.91 3.82
538 582 1.604604 CCATTTCCACTTCGGTGTGT 58.395 50.000 7.66 0.00 43.91 3.72
539 583 0.881118 CCCATTTCCACTTCGGTGTG 59.119 55.000 2.47 2.47 43.91 3.82
540 584 0.476771 ACCCATTTCCACTTCGGTGT 59.523 50.000 0.00 0.00 43.91 4.16
541 585 0.881118 CACCCATTTCCACTTCGGTG 59.119 55.000 0.00 0.00 44.92 4.94
542 586 0.251165 CCACCCATTTCCACTTCGGT 60.251 55.000 0.00 0.00 35.57 4.69
543 587 0.965363 CCCACCCATTTCCACTTCGG 60.965 60.000 0.00 0.00 0.00 4.30
544 588 0.037590 TCCCACCCATTTCCACTTCG 59.962 55.000 0.00 0.00 0.00 3.79
661 724 1.971695 GCCAAAAGGACCCAGGACG 60.972 63.158 0.00 0.00 0.00 4.79
662 725 1.971695 CGCCAAAAGGACCCAGGAC 60.972 63.158 0.00 0.00 0.00 3.85
663 726 2.434331 CGCCAAAAGGACCCAGGA 59.566 61.111 0.00 0.00 0.00 3.86
664 727 2.676471 CCGCCAAAAGGACCCAGG 60.676 66.667 0.00 0.00 0.00 4.45
767 895 1.032114 GGGAAGCGAATGGAGGTTGG 61.032 60.000 0.00 0.00 0.00 3.77
768 896 0.035056 AGGGAAGCGAATGGAGGTTG 60.035 55.000 0.00 0.00 0.00 3.77
769 897 0.698818 AAGGGAAGCGAATGGAGGTT 59.301 50.000 0.00 0.00 0.00 3.50
794 955 7.042523 GCCTATCTAATCTACTAGTACTAGCGC 60.043 44.444 26.54 0.00 36.66 5.92
797 958 7.927629 CCCGCCTATCTAATCTACTAGTACTAG 59.072 44.444 25.30 25.30 39.04 2.57
801 962 5.435291 GCCCGCCTATCTAATCTACTAGTA 58.565 45.833 1.89 1.89 0.00 1.82
803 964 3.312973 CGCCCGCCTATCTAATCTACTAG 59.687 52.174 0.00 0.00 0.00 2.57
884 1063 3.497932 GCGGCAGCAGAGCAGAAG 61.498 66.667 3.18 0.00 44.35 2.85
911 1109 4.564110 GGAATTCCCCCGCCTCCG 62.564 72.222 14.03 0.00 0.00 4.63
912 1110 4.564110 CGGAATTCCCCCGCCTCC 62.564 72.222 19.01 0.00 40.54 4.30
933 1131 1.962144 GGAGACGAAGACCGAACCA 59.038 57.895 0.00 0.00 41.76 3.67
988 1195 4.247380 CTCCATCCCCTCCGCAGC 62.247 72.222 0.00 0.00 0.00 5.25
1153 1400 3.181454 GGGGGAAGAAGCAAGATCGATAA 60.181 47.826 0.00 0.00 0.00 1.75
1163 1410 0.036306 GAAACTCGGGGGAAGAAGCA 59.964 55.000 0.00 0.00 0.00 3.91
1202 1449 0.239879 GAATCTTGTTGCGCCGGAAA 59.760 50.000 5.05 0.00 0.00 3.13
1294 1544 2.730672 CGAGGAAGCAACGGAAGCG 61.731 63.158 0.00 0.00 37.01 4.68
1325 1580 3.815856 TTTTTGAGACATGGCAGCAAA 57.184 38.095 13.65 13.65 0.00 3.68
1346 1601 2.235898 TCCCAGCAGCAAACAACTTTTT 59.764 40.909 0.00 0.00 0.00 1.94
1347 1602 1.830477 TCCCAGCAGCAAACAACTTTT 59.170 42.857 0.00 0.00 0.00 2.27
1348 1603 1.484038 TCCCAGCAGCAAACAACTTT 58.516 45.000 0.00 0.00 0.00 2.66
1349 1604 1.708341 ATCCCAGCAGCAAACAACTT 58.292 45.000 0.00 0.00 0.00 2.66
1350 1605 1.708341 AATCCCAGCAGCAAACAACT 58.292 45.000 0.00 0.00 0.00 3.16
1351 1606 2.137523 CAAATCCCAGCAGCAAACAAC 58.862 47.619 0.00 0.00 0.00 3.32
1364 1619 1.751351 GGCTCAGCTTAACCAAATCCC 59.249 52.381 0.00 0.00 0.00 3.85
1365 1620 2.424956 CAGGCTCAGCTTAACCAAATCC 59.575 50.000 0.00 0.00 0.00 3.01
1374 1629 3.988976 ACAAGATTCAGGCTCAGCTTA 57.011 42.857 0.00 0.00 0.00 3.09
1393 1648 2.978010 CCACCACTGCGACCCAAC 60.978 66.667 0.00 0.00 0.00 3.77
1570 1838 2.885861 GTGACGCTCACCGGAGAT 59.114 61.111 9.46 0.00 44.26 2.75
1589 1880 6.667414 ACAGATGAACCTGAGAAGATTAGTCT 59.333 38.462 0.00 0.00 37.59 3.24
1603 1912 0.390866 CTGCGAGCACAGATGAACCT 60.391 55.000 0.00 0.00 40.25 3.50
1604 1913 0.671781 ACTGCGAGCACAGATGAACC 60.672 55.000 8.23 0.00 40.25 3.62
1605 1914 0.441533 CACTGCGAGCACAGATGAAC 59.558 55.000 8.23 0.00 40.25 3.18
1606 1915 0.671472 CCACTGCGAGCACAGATGAA 60.671 55.000 8.23 0.00 40.25 2.57
1647 1956 3.419759 CCGGGCGACAGTTTTCCG 61.420 66.667 0.00 0.00 40.32 4.30
1650 1959 2.282180 ATGCCGGGCGACAGTTTT 60.282 55.556 15.40 0.00 0.00 2.43
1730 2039 8.635765 ACCTAGAGCAATACATTTTCAAAGAA 57.364 30.769 0.00 0.00 0.00 2.52
1731 2040 8.635765 AACCTAGAGCAATACATTTTCAAAGA 57.364 30.769 0.00 0.00 0.00 2.52
1732 2041 7.970614 GGAACCTAGAGCAATACATTTTCAAAG 59.029 37.037 0.00 0.00 0.00 2.77
1733 2042 7.450014 TGGAACCTAGAGCAATACATTTTCAAA 59.550 33.333 0.00 0.00 0.00 2.69
1736 2045 6.823689 TCTGGAACCTAGAGCAATACATTTTC 59.176 38.462 0.00 0.00 0.00 2.29
1737 2046 6.721318 TCTGGAACCTAGAGCAATACATTTT 58.279 36.000 0.00 0.00 0.00 1.82
1741 2078 5.755409 TTTCTGGAACCTAGAGCAATACA 57.245 39.130 0.00 0.00 0.00 2.29
1754 2091 7.225341 ACTTGCAATCTTTCATTTTTCTGGAAC 59.775 33.333 0.00 0.00 0.00 3.62
1758 2095 7.473027 ACACTTGCAATCTTTCATTTTTCTG 57.527 32.000 0.00 0.00 0.00 3.02
1762 2099 6.019640 CACGAACACTTGCAATCTTTCATTTT 60.020 34.615 0.00 0.00 0.00 1.82
1775 2112 3.668596 ACAGTAAACACGAACACTTGC 57.331 42.857 0.00 0.00 0.00 4.01
1785 2123 3.003378 GCCTGTCCAGAAACAGTAAACAC 59.997 47.826 3.60 0.00 44.22 3.32
1786 2124 3.118038 AGCCTGTCCAGAAACAGTAAACA 60.118 43.478 3.60 0.00 44.22 2.83
1787 2125 3.477530 AGCCTGTCCAGAAACAGTAAAC 58.522 45.455 3.60 0.00 44.22 2.01
1788 2126 3.857157 AGCCTGTCCAGAAACAGTAAA 57.143 42.857 3.60 0.00 44.22 2.01
1790 2128 4.832248 CAATAGCCTGTCCAGAAACAGTA 58.168 43.478 3.60 0.00 44.22 2.74
1791 2129 3.679389 CAATAGCCTGTCCAGAAACAGT 58.321 45.455 3.60 0.00 44.22 3.55
1792 2130 2.421424 GCAATAGCCTGTCCAGAAACAG 59.579 50.000 0.00 0.00 45.10 3.16
1794 2132 2.421424 CTGCAATAGCCTGTCCAGAAAC 59.579 50.000 0.00 0.00 41.13 2.78
1795 2133 2.305635 TCTGCAATAGCCTGTCCAGAAA 59.694 45.455 0.00 0.00 41.13 2.52
1797 2135 1.571955 TCTGCAATAGCCTGTCCAGA 58.428 50.000 0.00 0.00 41.13 3.86
1798 2136 2.012673 GTTCTGCAATAGCCTGTCCAG 58.987 52.381 0.00 0.00 41.13 3.86
1830 2171 1.819632 GGTGCTGGGAATAGTGCCG 60.820 63.158 0.00 0.00 38.32 5.69
1842 2183 1.822613 CAGCCTGCCTATGGTGCTG 60.823 63.158 0.00 0.00 42.85 4.41
1962 2303 4.201920 GCAGAGAAATTCAATAACCGGGTC 60.202 45.833 6.32 0.00 0.00 4.46
1963 2304 3.694566 GCAGAGAAATTCAATAACCGGGT 59.305 43.478 6.32 0.00 0.00 5.28
1973 2314 4.288105 AGAGGAAAGAGGCAGAGAAATTCA 59.712 41.667 0.00 0.00 0.00 2.57
1974 2315 4.635324 CAGAGGAAAGAGGCAGAGAAATTC 59.365 45.833 0.00 0.00 0.00 2.17
1975 2316 4.042684 ACAGAGGAAAGAGGCAGAGAAATT 59.957 41.667 0.00 0.00 0.00 1.82
1996 2340 2.483013 GGAGTGAACTGCTGTGTACACA 60.483 50.000 26.37 26.37 39.32 3.72
1997 2341 2.135933 GGAGTGAACTGCTGTGTACAC 58.864 52.381 19.36 19.36 0.00 2.90
2009 2353 3.477210 ACAAGAGGACAAGGAGTGAAC 57.523 47.619 0.00 0.00 0.00 3.18
2012 2356 2.370189 AGGAACAAGAGGACAAGGAGTG 59.630 50.000 0.00 0.00 0.00 3.51
2015 2359 1.072331 GCAGGAACAAGAGGACAAGGA 59.928 52.381 0.00 0.00 0.00 3.36
2031 2375 5.170748 GTTGTTATTCAATTTCCTGGCAGG 58.829 41.667 28.01 28.01 38.38 4.85
2069 2413 2.359900 GTGGCCAGTGATTCAGGTAAG 58.640 52.381 5.11 0.00 0.00 2.34
2102 2446 1.460743 CACAGGACATACACAAGTGCG 59.539 52.381 0.00 0.00 0.00 5.34
2145 2489 2.354203 GCAGTACACAGAGGAAAGAGGG 60.354 54.545 0.00 0.00 0.00 4.30
2197 2541 3.299340 TGTTAAACGAGAGGTCTCTGC 57.701 47.619 5.09 0.00 40.61 4.26
2207 2551 1.459592 CCGCTCAGGTTGTTAAACGAG 59.540 52.381 0.00 0.00 37.15 4.18
2267 2611 1.486310 TGATCGGGCATAAGCTGAACT 59.514 47.619 0.00 0.00 41.70 3.01
2334 2678 7.436430 AATGAGAGCATGAGCAATAATAGTG 57.564 36.000 0.00 0.00 45.49 2.74
2377 2721 1.715519 GCAATGCTGTACAAACAAGCG 59.284 47.619 0.00 0.00 34.49 4.68
2401 2752 3.374988 TGACGCCACAGATCATTGAATTC 59.625 43.478 0.00 0.00 0.00 2.17
2419 2770 2.158449 GCAATTGTCTCCAGACTTGACG 59.842 50.000 7.40 0.00 44.99 4.35
2549 2900 4.793201 AGCAGAGGGGATAAAACAATACC 58.207 43.478 0.00 0.00 0.00 2.73
2560 2912 0.400237 ATGAGCAGAGCAGAGGGGAT 60.400 55.000 0.00 0.00 0.00 3.85
2563 2915 2.609984 CGAATATGAGCAGAGCAGAGGG 60.610 54.545 0.00 0.00 0.00 4.30
2569 2921 3.462021 AGGAAACGAATATGAGCAGAGC 58.538 45.455 0.00 0.00 0.00 4.09
2571 2923 6.173339 AGAAAAGGAAACGAATATGAGCAGA 58.827 36.000 0.00 0.00 0.00 4.26
2583 2935 4.282873 GCTGAACTGAAGAAAAGGAAACG 58.717 43.478 0.00 0.00 0.00 3.60
2595 2947 1.405105 GCTTGTTGTGGCTGAACTGAA 59.595 47.619 0.00 0.00 0.00 3.02
2634 2986 4.160642 TGCTCCACAGATGATAGCAATT 57.839 40.909 0.00 0.00 39.94 2.32
2685 3037 3.181445 ACCAAAGAAGCATACTGACCACA 60.181 43.478 0.00 0.00 0.00 4.17
2692 3044 2.619074 GCCTCCACCAAAGAAGCATACT 60.619 50.000 0.00 0.00 0.00 2.12
2771 3123 5.120830 CAGACAGTGTTACTATGAACAAGCC 59.879 44.000 0.00 0.00 40.88 4.35
2783 3135 8.149973 TGAAGTTTAAATCCAGACAGTGTTAC 57.850 34.615 0.00 0.00 0.00 2.50
2873 3250 7.302524 TGCTACGAAACAGGAAAATATGAAAC 58.697 34.615 0.00 0.00 0.00 2.78
3037 3414 6.748132 CACAAAATGGATTATGTGGTATCCC 58.252 40.000 0.00 0.00 39.69 3.85
3113 3490 3.585289 TGAATTGGTAGTGGCTGTCCTAA 59.415 43.478 0.00 0.00 0.00 2.69
3138 3515 7.124147 AGGCATGTAAGCAACCAAGTATAAAAT 59.876 33.333 0.00 0.00 35.83 1.82
3152 3529 0.107214 GGCACCTAGGCATGTAAGCA 60.107 55.000 9.30 0.00 43.51 3.91
3177 3554 4.464069 ACTGCAGCAAAGGTTTTTGTAA 57.536 36.364 15.27 0.00 44.41 2.41
3269 3646 9.197694 GCATGTTATAACTACCAGATCAAGTAG 57.802 37.037 16.33 16.51 41.44 2.57
3538 3915 9.248291 TCTTTCAATCTTTTAACAGCAACAATC 57.752 29.630 0.00 0.00 0.00 2.67
3557 3934 4.887071 ACCAACAGCATTGTAGTCTTTCAA 59.113 37.500 0.67 0.00 36.23 2.69
3895 4285 1.901591 CATTTGGTGGCAGTCTGAGT 58.098 50.000 3.32 0.00 0.00 3.41
3919 4309 5.449177 GCTAACAAGTGTCAGCTTTTCAAGT 60.449 40.000 0.00 0.00 0.00 3.16
3923 4313 3.002348 ACGCTAACAAGTGTCAGCTTTTC 59.998 43.478 5.09 0.00 31.74 2.29
4038 4442 6.810911 AGACTGTGTATGAGCCTAGTTAATG 58.189 40.000 0.00 0.00 0.00 1.90
4044 4448 4.207955 TGGTAGACTGTGTATGAGCCTAG 58.792 47.826 0.00 0.00 0.00 3.02
4057 4461 2.086869 CCACAAATGGCTGGTAGACTG 58.913 52.381 0.00 0.00 39.82 3.51
4104 4514 3.903714 TCTACCCAGGATGATATGTGGTG 59.096 47.826 0.00 0.00 39.69 4.17
4105 4515 4.213531 TCTACCCAGGATGATATGTGGT 57.786 45.455 0.00 0.00 39.69 4.16
4107 4517 5.047021 ACGAATCTACCCAGGATGATATGTG 60.047 44.000 0.00 0.00 39.69 3.21
4109 4519 5.394663 GGACGAATCTACCCAGGATGATATG 60.395 48.000 0.00 0.00 39.69 1.78
4126 4536 0.173708 GGCGAGACAGAAGGACGAAT 59.826 55.000 0.00 0.00 0.00 3.34
4130 4540 0.532573 TGATGGCGAGACAGAAGGAC 59.467 55.000 0.00 0.00 0.00 3.85
4139 4549 1.806542 GAGCTTTGTTTGATGGCGAGA 59.193 47.619 0.00 0.00 0.00 4.04
4141 4551 0.516877 CGAGCTTTGTTTGATGGCGA 59.483 50.000 0.00 0.00 0.00 5.54
4159 4569 0.107456 AGGAGCAATCACCATAGCCG 59.893 55.000 0.00 0.00 0.00 5.52
4161 4571 2.338577 ACAGGAGCAATCACCATAGC 57.661 50.000 0.00 0.00 0.00 2.97
4176 4586 3.945285 ACAAACAGTGTACTTCCAACAGG 59.055 43.478 0.00 0.00 39.29 4.00
4194 4630 6.109156 TGGAACTACTTCTATCAGCACAAA 57.891 37.500 0.00 0.00 0.00 2.83
4237 4674 1.682854 GAGGGAGTCAGAGAGCATGAG 59.317 57.143 0.00 0.00 0.00 2.90
4248 4685 8.896722 AAGAGTTAAGTAAATAGAGGGAGTCA 57.103 34.615 0.00 0.00 0.00 3.41
4269 4706 6.580041 GTGCACTGTGAAATGTCAATAAAGAG 59.420 38.462 12.86 0.00 34.87 2.85
4271 4708 5.630680 GGTGCACTGTGAAATGTCAATAAAG 59.369 40.000 17.98 0.00 34.87 1.85
4273 4710 4.582240 TGGTGCACTGTGAAATGTCAATAA 59.418 37.500 17.98 0.00 34.87 1.40
4274 4711 4.140536 TGGTGCACTGTGAAATGTCAATA 58.859 39.130 17.98 0.00 34.87 1.90
4350 4787 7.059788 TCGGAGGGATTAATTCATTTCATCAA 58.940 34.615 0.00 0.00 0.00 2.57
4368 4805 4.923871 CGACAAGTAATATGAATCGGAGGG 59.076 45.833 0.00 0.00 0.00 4.30
4369 4806 4.386049 GCGACAAGTAATATGAATCGGAGG 59.614 45.833 0.00 0.00 0.00 4.30
4370 4807 5.223382 AGCGACAAGTAATATGAATCGGAG 58.777 41.667 0.00 0.00 0.00 4.63
4371 4808 5.196341 AGCGACAAGTAATATGAATCGGA 57.804 39.130 0.00 0.00 0.00 4.55
4372 4809 4.982295 TGAGCGACAAGTAATATGAATCGG 59.018 41.667 0.00 0.00 0.00 4.18
4373 4810 5.687730 AGTGAGCGACAAGTAATATGAATCG 59.312 40.000 0.00 0.00 0.00 3.34
4374 4811 7.470289 AAGTGAGCGACAAGTAATATGAATC 57.530 36.000 0.00 0.00 0.00 2.52
4375 4812 8.198109 ACTAAGTGAGCGACAAGTAATATGAAT 58.802 33.333 0.00 0.00 0.00 2.57
4376 4813 7.544622 ACTAAGTGAGCGACAAGTAATATGAA 58.455 34.615 0.00 0.00 0.00 2.57
4377 4814 7.096884 ACTAAGTGAGCGACAAGTAATATGA 57.903 36.000 0.00 0.00 0.00 2.15
4378 4815 7.913821 TGTACTAAGTGAGCGACAAGTAATATG 59.086 37.037 0.00 0.00 30.99 1.78
4379 4816 7.993101 TGTACTAAGTGAGCGACAAGTAATAT 58.007 34.615 0.00 0.00 30.99 1.28
4380 4817 7.381766 TGTACTAAGTGAGCGACAAGTAATA 57.618 36.000 0.00 0.00 30.99 0.98
4381 4818 6.263516 TGTACTAAGTGAGCGACAAGTAAT 57.736 37.500 0.00 0.00 30.99 1.89
4382 4819 5.694231 TGTACTAAGTGAGCGACAAGTAA 57.306 39.130 0.00 0.00 30.99 2.24
4383 4820 5.694231 TTGTACTAAGTGAGCGACAAGTA 57.306 39.130 0.00 0.00 32.18 2.24
4384 4821 4.579454 TTGTACTAAGTGAGCGACAAGT 57.421 40.909 0.00 0.00 32.18 3.16
4385 4822 5.900339 TTTTGTACTAAGTGAGCGACAAG 57.100 39.130 0.00 0.00 36.30 3.16
4386 4823 7.949903 TTATTTTGTACTAAGTGAGCGACAA 57.050 32.000 0.00 0.00 34.22 3.18
4387 4824 7.949903 TTTATTTTGTACTAAGTGAGCGACA 57.050 32.000 0.00 0.00 0.00 4.35
4412 4849 4.853007 AGCTGTCATAAGATGGCTCTTTT 58.147 39.130 4.87 0.00 41.91 2.27
4419 4856 6.461110 AAATGGAAAGCTGTCATAAGATGG 57.539 37.500 6.17 0.00 0.00 3.51
4602 5064 5.964758 TGGATTATTTTTGGATCACACTGC 58.035 37.500 0.00 0.00 0.00 4.40
4683 5145 2.293122 CAGTTTTGCCAGTCCGAAATCA 59.707 45.455 0.00 0.00 0.00 2.57
4704 5166 0.253327 GGGTCTCCTGGTGATCCAAC 59.747 60.000 20.48 0.28 43.81 3.77
4734 5196 3.918977 ACGGTACCACGCACTGCA 61.919 61.111 13.54 0.00 37.37 4.41
4755 5217 5.187772 TGACAAATACTCTGGAGCTATGTGT 59.812 40.000 11.83 11.83 31.61 3.72
4821 5283 2.341846 TCAACTCAACCAACAGGACC 57.658 50.000 0.00 0.00 0.00 4.46
4866 5328 2.099141 TCTGATTTGCCAGTCTTCCG 57.901 50.000 0.00 0.00 35.71 4.30
4875 5337 1.378514 TCCGCCCTTCTGATTTGCC 60.379 57.895 0.00 0.00 0.00 4.52
4932 5394 2.030805 GTGAACTTGAGACCATTGCACC 60.031 50.000 0.00 0.00 0.00 5.01
4976 5438 1.398390 CGAATGGAAAGGAGAAAGCGG 59.602 52.381 0.00 0.00 0.00 5.52
5007 5469 4.020128 AGAGACCAAACTAAAGGCGAGAAT 60.020 41.667 0.00 0.00 0.00 2.40
5024 5486 2.990514 GTCGAAAAGCTCTGAAGAGACC 59.009 50.000 11.56 0.00 44.74 3.85
5033 5495 6.398918 ACATACATAGTTGTCGAAAAGCTCT 58.601 36.000 0.00 0.00 37.28 4.09
5067 5529 4.695455 TCAATGTAAAAGGCGAGAAAGGAG 59.305 41.667 0.00 0.00 0.00 3.69
5125 5587 5.663456 TCATTTTTGCAGCTTCTGTTTTCT 58.337 33.333 0.00 0.00 33.43 2.52
5126 5588 5.971895 TCATTTTTGCAGCTTCTGTTTTC 57.028 34.783 0.00 0.00 33.43 2.29
5280 5742 7.495934 CAGAAGGTGGTAACTGATGGTTAATAG 59.504 40.741 0.00 0.00 41.41 1.73
5300 5762 6.516718 TCAAGTCTGAACTCTAAACAGAAGG 58.483 40.000 0.00 0.00 41.31 3.46
5332 5794 7.007723 ACCACCCTTGAATACTTATTTTGACA 58.992 34.615 0.00 0.00 0.00 3.58
5340 5802 6.697641 AAAGAGACCACCCTTGAATACTTA 57.302 37.500 0.00 0.00 0.00 2.24
5342 5804 5.310857 AGAAAAGAGACCACCCTTGAATACT 59.689 40.000 0.00 0.00 0.00 2.12
5355 5817 7.609056 TGTATACACCACTAAGAAAAGAGACC 58.391 38.462 0.08 0.00 0.00 3.85
5410 5872 1.550130 CCTAGGTGGTCCGGCAAGAA 61.550 60.000 0.00 0.00 39.05 2.52
5484 5956 3.202906 TCAGAAATAAGGCCGATTTCCG 58.797 45.455 28.55 22.98 42.03 4.30
5491 5963 3.378112 TGCAAGAATCAGAAATAAGGCCG 59.622 43.478 0.00 0.00 0.00 6.13
5494 5974 6.127535 ACCACATGCAAGAATCAGAAATAAGG 60.128 38.462 0.00 0.00 0.00 2.69
5548 6029 2.089980 ACCATCATGTTCAGCTGCTTC 58.910 47.619 9.47 2.21 0.00 3.86
5859 6346 2.135139 GCATCTACGCGATCAAATGGA 58.865 47.619 15.93 0.00 0.00 3.41
5861 6348 3.538780 CAAGCATCTACGCGATCAAATG 58.461 45.455 15.93 10.03 36.85 2.32
5873 6360 1.456296 CAGGCAACAGCAAGCATCTA 58.544 50.000 0.00 0.00 41.41 1.98
5885 6372 1.315257 AATGCGACCATCCAGGCAAC 61.315 55.000 0.00 0.00 43.14 4.17
5886 6373 1.001020 AATGCGACCATCCAGGCAA 60.001 52.632 0.00 0.00 43.14 4.52
5889 6376 1.143838 TCGAATGCGACCATCCAGG 59.856 57.895 0.00 0.00 42.51 4.45
5898 6385 0.656259 CGTCTCCTAGTCGAATGCGA 59.344 55.000 0.00 0.00 45.71 5.10
5900 6387 0.030908 CCCGTCTCCTAGTCGAATGC 59.969 60.000 0.00 0.00 0.00 3.56
5901 6388 0.669077 CCCCGTCTCCTAGTCGAATG 59.331 60.000 0.00 0.00 0.00 2.67
5902 6389 1.108132 GCCCCGTCTCCTAGTCGAAT 61.108 60.000 0.00 0.00 0.00 3.34
5903 6390 1.751927 GCCCCGTCTCCTAGTCGAA 60.752 63.158 0.00 0.00 0.00 3.71
5904 6391 2.124403 GCCCCGTCTCCTAGTCGA 60.124 66.667 0.00 0.00 0.00 4.20
5905 6392 1.601419 TTTGCCCCGTCTCCTAGTCG 61.601 60.000 0.00 0.00 0.00 4.18
5906 6393 0.175989 CTTTGCCCCGTCTCCTAGTC 59.824 60.000 0.00 0.00 0.00 2.59
5907 6394 1.265454 CCTTTGCCCCGTCTCCTAGT 61.265 60.000 0.00 0.00 0.00 2.57
5909 6396 0.976073 CTCCTTTGCCCCGTCTCCTA 60.976 60.000 0.00 0.00 0.00 2.94
5911 6398 2.245438 CTCTCCTTTGCCCCGTCTCC 62.245 65.000 0.00 0.00 0.00 3.71
5912 6399 1.219393 CTCTCCTTTGCCCCGTCTC 59.781 63.158 0.00 0.00 0.00 3.36
5915 6402 2.529389 ACCTCTCCTTTGCCCCGT 60.529 61.111 0.00 0.00 0.00 5.28
5917 6404 1.002011 GTCACCTCTCCTTTGCCCC 60.002 63.158 0.00 0.00 0.00 5.80
5945 6443 2.606378 ACCCTTACCCTATCCGACATC 58.394 52.381 0.00 0.00 0.00 3.06
5950 6449 2.245582 CACCTACCCTTACCCTATCCG 58.754 57.143 0.00 0.00 0.00 4.18
5987 6488 2.241160 ACACGATACCATGCCCGTATA 58.759 47.619 0.00 0.00 33.62 1.47
6001 6502 3.925379 TGAGCTCACACAAATACACGAT 58.075 40.909 13.74 0.00 0.00 3.73
6002 6503 3.317150 CTGAGCTCACACAAATACACGA 58.683 45.455 13.74 0.00 0.00 4.35
6003 6504 2.413112 CCTGAGCTCACACAAATACACG 59.587 50.000 13.74 0.00 0.00 4.49
6004 6505 3.403038 ACCTGAGCTCACACAAATACAC 58.597 45.455 13.74 0.00 0.00 2.90
6005 6506 3.664107 GACCTGAGCTCACACAAATACA 58.336 45.455 13.74 0.00 0.00 2.29
6006 6507 2.668457 CGACCTGAGCTCACACAAATAC 59.332 50.000 13.74 0.00 0.00 1.89
6007 6508 2.353704 CCGACCTGAGCTCACACAAATA 60.354 50.000 13.74 0.00 0.00 1.40
6008 6509 1.609061 CCGACCTGAGCTCACACAAAT 60.609 52.381 13.74 0.00 0.00 2.32
6009 6510 0.249868 CCGACCTGAGCTCACACAAA 60.250 55.000 13.74 0.00 0.00 2.83
6013 6514 3.695606 GGCCGACCTGAGCTCACA 61.696 66.667 13.74 0.00 0.00 3.58
6024 6525 3.423154 CAGCAACGAAGGGCCGAC 61.423 66.667 0.00 0.00 32.34 4.79
6032 6533 2.162319 TGTACATGAGCAGCAACGAA 57.838 45.000 0.00 0.00 0.00 3.85
6060 6561 6.604795 CCATCTCTTCTCTTCTCTTCTCTCTT 59.395 42.308 0.00 0.00 0.00 2.85
6061 6562 6.125029 CCATCTCTTCTCTTCTCTTCTCTCT 58.875 44.000 0.00 0.00 0.00 3.10
6062 6563 5.300286 CCCATCTCTTCTCTTCTCTTCTCTC 59.700 48.000 0.00 0.00 0.00 3.20
6063 6564 5.044179 TCCCATCTCTTCTCTTCTCTTCTCT 60.044 44.000 0.00 0.00 0.00 3.10
6064 6565 5.200483 TCCCATCTCTTCTCTTCTCTTCTC 58.800 45.833 0.00 0.00 0.00 2.87
6065 6566 5.205517 TCCCATCTCTTCTCTTCTCTTCT 57.794 43.478 0.00 0.00 0.00 2.85
6066 6567 5.598005 TCATCCCATCTCTTCTCTTCTCTTC 59.402 44.000 0.00 0.00 0.00 2.87
6073 6574 4.618635 TCAACTCATCCCATCTCTTCTCT 58.381 43.478 0.00 0.00 0.00 3.10
6158 6661 2.159198 CCATATGCAAGGCCTGACAAAC 60.159 50.000 5.69 0.00 0.00 2.93
6175 6678 8.834004 AACAGAGTAGTAAGATAACCACCATA 57.166 34.615 0.00 0.00 0.00 2.74
6179 6682 9.485206 TTTCAAACAGAGTAGTAAGATAACCAC 57.515 33.333 0.00 0.00 0.00 4.16
6181 6684 8.657729 GCTTTCAAACAGAGTAGTAAGATAACC 58.342 37.037 0.00 0.00 0.00 2.85
6193 6699 6.705863 AAATGAAGAGCTTTCAAACAGAGT 57.294 33.333 13.04 0.00 31.55 3.24
6219 6725 1.610038 TCCAGCGAAACTTGAGACGTA 59.390 47.619 0.00 0.00 0.00 3.57
6226 6732 1.533625 TGGGATTCCAGCGAAACTTG 58.466 50.000 4.80 0.00 38.32 3.16
6328 6834 0.820871 GAATGTCCGTCTCTGCCTCT 59.179 55.000 0.00 0.00 0.00 3.69
6334 6840 3.835395 AGGAAGAAAGAATGTCCGTCTCT 59.165 43.478 0.00 0.00 35.19 3.10
6337 6843 3.263261 GGAGGAAGAAAGAATGTCCGTC 58.737 50.000 0.00 0.00 35.19 4.79
6343 6849 4.798574 CAAAACGGGAGGAAGAAAGAATG 58.201 43.478 0.00 0.00 0.00 2.67
6344 6850 3.255888 GCAAAACGGGAGGAAGAAAGAAT 59.744 43.478 0.00 0.00 0.00 2.40
6347 6853 1.269723 GGCAAAACGGGAGGAAGAAAG 59.730 52.381 0.00 0.00 0.00 2.62
6381 6887 1.072159 AGACAGTGCAGCACCTTCC 59.928 57.895 22.41 9.09 34.49 3.46
6385 6891 1.593196 TTTACAGACAGTGCAGCACC 58.407 50.000 22.41 7.05 34.49 5.01
6392 6898 7.095187 GGAAATCACCTAGTTTTACAGACAGTG 60.095 40.741 0.00 0.00 0.00 3.66
6396 6902 7.159372 TGAGGAAATCACCTAGTTTTACAGAC 58.841 38.462 0.00 0.00 40.73 3.51
6419 6925 3.899981 ATCCGGCAGCAAAGCGTGA 62.900 57.895 0.00 0.00 34.64 4.35
6425 6931 4.799564 ATCTTTAAAATCCGGCAGCAAA 57.200 36.364 0.00 0.00 0.00 3.68
6501 7007 4.082408 CCGTTCACACATAGTTACCTCTGA 60.082 45.833 0.00 0.00 0.00 3.27
6502 7008 4.082408 TCCGTTCACACATAGTTACCTCTG 60.082 45.833 0.00 0.00 0.00 3.35
6503 7009 4.084287 TCCGTTCACACATAGTTACCTCT 58.916 43.478 0.00 0.00 0.00 3.69
6504 7010 4.157289 TCTCCGTTCACACATAGTTACCTC 59.843 45.833 0.00 0.00 0.00 3.85
6505 7011 4.084287 TCTCCGTTCACACATAGTTACCT 58.916 43.478 0.00 0.00 0.00 3.08
6506 7012 4.082354 ACTCTCCGTTCACACATAGTTACC 60.082 45.833 0.00 0.00 0.00 2.85
6507 7013 5.056894 ACTCTCCGTTCACACATAGTTAC 57.943 43.478 0.00 0.00 0.00 2.50
6508 7014 6.679638 GCATACTCTCCGTTCACACATAGTTA 60.680 42.308 0.00 0.00 0.00 2.24
6509 7015 5.651530 CATACTCTCCGTTCACACATAGTT 58.348 41.667 0.00 0.00 0.00 2.24
6510 7016 4.440250 GCATACTCTCCGTTCACACATAGT 60.440 45.833 0.00 0.00 0.00 2.12
6511 7017 4.045104 GCATACTCTCCGTTCACACATAG 58.955 47.826 0.00 0.00 0.00 2.23
6512 7018 3.445805 TGCATACTCTCCGTTCACACATA 59.554 43.478 0.00 0.00 0.00 2.29
6513 7019 2.233676 TGCATACTCTCCGTTCACACAT 59.766 45.455 0.00 0.00 0.00 3.21
6514 7020 1.616374 TGCATACTCTCCGTTCACACA 59.384 47.619 0.00 0.00 0.00 3.72
6515 7021 2.363788 TGCATACTCTCCGTTCACAC 57.636 50.000 0.00 0.00 0.00 3.82
6516 7022 2.233676 ACATGCATACTCTCCGTTCACA 59.766 45.455 0.00 0.00 0.00 3.58
6517 7023 2.893637 ACATGCATACTCTCCGTTCAC 58.106 47.619 0.00 0.00 0.00 3.18
6518 7024 3.445805 TGTACATGCATACTCTCCGTTCA 59.554 43.478 0.00 0.00 0.00 3.18
6519 7025 4.041740 TGTACATGCATACTCTCCGTTC 57.958 45.455 0.00 0.00 0.00 3.95
6521 7027 4.099419 TCATTGTACATGCATACTCTCCGT 59.901 41.667 0.00 0.00 0.00 4.69
6522 7028 4.620982 TCATTGTACATGCATACTCTCCG 58.379 43.478 0.00 0.00 0.00 4.63
6523 7029 6.707608 TGATTCATTGTACATGCATACTCTCC 59.292 38.462 0.00 0.00 0.00 3.71
6524 7030 7.719778 TGATTCATTGTACATGCATACTCTC 57.280 36.000 0.00 0.00 0.00 3.20
6558 7064 9.447157 CACATACATTCCCCAATTTAATTGTTT 57.553 29.630 15.40 0.00 38.59 2.83
6569 7075 4.308526 TTGTAGCACATACATTCCCCAA 57.691 40.909 0.00 0.00 43.87 4.12
6571 7077 5.359576 TGATTTTGTAGCACATACATTCCCC 59.640 40.000 0.00 0.00 43.87 4.81
6572 7078 6.127758 TGTGATTTTGTAGCACATACATTCCC 60.128 38.462 0.00 0.00 43.87 3.97
6573 7079 6.851609 TGTGATTTTGTAGCACATACATTCC 58.148 36.000 0.00 0.00 43.87 3.01
6582 7088 6.032775 CGTCATCAAATGTGATTTTGTAGCAC 59.967 38.462 0.00 0.00 42.03 4.40
6584 7090 6.032775 CACGTCATCAAATGTGATTTTGTAGC 59.967 38.462 0.00 0.00 42.03 3.58
6585 7091 7.297391 TCACGTCATCAAATGTGATTTTGTAG 58.703 34.615 0.00 0.00 42.03 2.74
6586 7092 7.195839 TCACGTCATCAAATGTGATTTTGTA 57.804 32.000 0.00 0.00 42.03 2.41
6587 7093 6.070897 TCACGTCATCAAATGTGATTTTGT 57.929 33.333 0.00 0.00 42.03 2.83
6588 7094 6.989796 TTCACGTCATCAAATGTGATTTTG 57.010 33.333 0.00 0.00 42.03 2.44
6589 7095 6.587226 CCATTCACGTCATCAAATGTGATTTT 59.413 34.615 0.00 0.00 42.03 1.82
6591 7097 5.183713 ACCATTCACGTCATCAAATGTGATT 59.816 36.000 0.00 0.00 42.03 2.57
6594 7100 4.424061 ACCATTCACGTCATCAAATGTG 57.576 40.909 0.00 0.00 37.48 3.21
6595 7101 4.797471 CAACCATTCACGTCATCAAATGT 58.203 39.130 0.00 0.00 0.00 2.71
6596 7102 3.609373 GCAACCATTCACGTCATCAAATG 59.391 43.478 0.00 0.00 0.00 2.32
6597 7103 3.255395 TGCAACCATTCACGTCATCAAAT 59.745 39.130 0.00 0.00 0.00 2.32
6598 7104 2.620585 TGCAACCATTCACGTCATCAAA 59.379 40.909 0.00 0.00 0.00 2.69
6599 7105 2.225467 TGCAACCATTCACGTCATCAA 58.775 42.857 0.00 0.00 0.00 2.57
6600 7106 1.889545 TGCAACCATTCACGTCATCA 58.110 45.000 0.00 0.00 0.00 3.07
6601 7107 2.162208 ACATGCAACCATTCACGTCATC 59.838 45.455 0.00 0.00 0.00 2.92
6602 7108 2.161855 ACATGCAACCATTCACGTCAT 58.838 42.857 0.00 0.00 0.00 3.06
6603 7109 1.603456 ACATGCAACCATTCACGTCA 58.397 45.000 0.00 0.00 0.00 4.35
6604 7110 2.031245 TCAACATGCAACCATTCACGTC 60.031 45.455 0.00 0.00 0.00 4.34
6605 7111 1.952990 TCAACATGCAACCATTCACGT 59.047 42.857 0.00 0.00 0.00 4.49
6606 7112 2.226200 TCTCAACATGCAACCATTCACG 59.774 45.455 0.00 0.00 0.00 4.35
6607 7113 3.503363 TCTCTCAACATGCAACCATTCAC 59.497 43.478 0.00 0.00 0.00 3.18
6608 7114 3.753815 TCTCTCAACATGCAACCATTCA 58.246 40.909 0.00 0.00 0.00 2.57
6609 7115 4.771590 TTCTCTCAACATGCAACCATTC 57.228 40.909 0.00 0.00 0.00 2.67
6610 7116 5.733620 AATTCTCTCAACATGCAACCATT 57.266 34.783 0.00 0.00 0.00 3.16
6611 7117 5.163581 GCTAATTCTCTCAACATGCAACCAT 60.164 40.000 0.00 0.00 0.00 3.55
6612 7118 4.156556 GCTAATTCTCTCAACATGCAACCA 59.843 41.667 0.00 0.00 0.00 3.67
6623 7129 3.132289 CCCCACTAACGCTAATTCTCTCA 59.868 47.826 0.00 0.00 0.00 3.27
6670 7176 8.093927 GCAAGCTATGATAGAAAATCCTACTCT 58.906 37.037 3.13 0.00 0.00 3.24
6671 7177 7.333174 GGCAAGCTATGATAGAAAATCCTACTC 59.667 40.741 3.13 0.00 0.00 2.59
6677 7183 6.624352 TGTGGCAAGCTATGATAGAAAATC 57.376 37.500 3.13 0.00 0.00 2.17
6698 7204 9.642327 ACCGTTGAAAACTTTAACTAATTTTGT 57.358 25.926 0.00 0.00 46.99 2.83
6699 7205 9.894439 CACCGTTGAAAACTTTAACTAATTTTG 57.106 29.630 0.00 0.00 46.99 2.44
6704 7210 8.715191 TCTACACCGTTGAAAACTTTAACTAA 57.285 30.769 0.00 0.00 46.99 2.24
6712 7218 4.573607 GGAACTTCTACACCGTTGAAAACT 59.426 41.667 0.00 0.00 46.99 2.66
6714 7220 4.515361 TGGAACTTCTACACCGTTGAAAA 58.485 39.130 0.00 0.00 28.50 2.29
6721 7227 4.760204 AGGATTTTTGGAACTTCTACACCG 59.240 41.667 0.00 0.00 0.00 4.94
6728 7234 8.893219 ATCTTTTTGAGGATTTTTGGAACTTC 57.107 30.769 0.00 0.00 0.00 3.01
6734 7240 9.777297 TTTTAGGATCTTTTTGAGGATTTTTGG 57.223 29.630 0.00 0.00 0.00 3.28
6741 7247 7.340743 TGTGTTGTTTTAGGATCTTTTTGAGGA 59.659 33.333 0.00 0.00 0.00 3.71
6742 7248 7.488322 TGTGTTGTTTTAGGATCTTTTTGAGG 58.512 34.615 0.00 0.00 0.00 3.86
6744 7250 8.912988 AGATGTGTTGTTTTAGGATCTTTTTGA 58.087 29.630 0.00 0.00 0.00 2.69
6745 7251 8.971321 CAGATGTGTTGTTTTAGGATCTTTTTG 58.029 33.333 0.00 0.00 0.00 2.44
6752 7258 8.635765 ATGTTACAGATGTGTTGTTTTAGGAT 57.364 30.769 0.00 0.00 38.19 3.24
6754 7260 9.607285 GTTATGTTACAGATGTGTTGTTTTAGG 57.393 33.333 0.00 0.00 38.19 2.69
6757 7263 9.462174 CATGTTATGTTACAGATGTGTTGTTTT 57.538 29.630 0.00 0.00 38.19 2.43
6767 7273 6.483307 CCGTTGGATCATGTTATGTTACAGAT 59.517 38.462 0.00 0.00 0.00 2.90
6768 7274 5.815222 CCGTTGGATCATGTTATGTTACAGA 59.185 40.000 0.00 0.00 0.00 3.41
6771 7277 4.261031 GCCCGTTGGATCATGTTATGTTAC 60.261 45.833 0.00 0.00 0.00 2.50
6775 7281 1.264020 CGCCCGTTGGATCATGTTATG 59.736 52.381 0.00 0.00 0.00 1.90
6809 7315 9.502091 TTTTGTCTAGAACACATAAAGCTGTAT 57.498 29.630 0.00 0.00 37.70 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.