Multiple sequence alignment - TraesCS3A01G089600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G089600 chr3A 100.000 2820 0 0 1 2820 57245695 57242876 0.000000e+00 5208.0
1 TraesCS3A01G089600 chr3A 98.394 249 4 0 139 387 708205179 708205427 3.340000e-119 438.0
2 TraesCS3A01G089600 chr3A 87.108 287 35 2 1018 1303 57226878 57226593 9.740000e-85 324.0
3 TraesCS3A01G089600 chr3A 90.164 61 6 0 1532 1592 107754914 107754974 2.330000e-11 80.5
4 TraesCS3A01G089600 chr3D 93.847 1219 46 16 422 1619 45687397 45686187 0.000000e+00 1808.0
5 TraesCS3A01G089600 chr3D 90.695 892 42 13 1650 2532 45686190 45685331 0.000000e+00 1149.0
6 TraesCS3A01G089600 chr3D 93.907 279 16 1 143 421 310364373 310364650 1.210000e-113 420.0
7 TraesCS3A01G089600 chr3D 92.361 288 19 3 139 425 332890219 332890504 9.400000e-110 407.0
8 TraesCS3A01G089600 chr3D 83.103 290 46 3 1014 1301 45629547 45629835 7.750000e-66 261.0
9 TraesCS3A01G089600 chr3D 95.294 85 3 1 1 85 45687480 45687397 1.760000e-27 134.0
10 TraesCS3A01G089600 chr3D 86.885 61 8 0 1532 1592 91679148 91679208 5.040000e-08 69.4
11 TraesCS3A01G089600 chr3D 97.436 39 1 0 623 661 92368812 92368774 1.810000e-07 67.6
12 TraesCS3A01G089600 chr3B 87.265 691 49 19 1433 2091 71350762 71350079 0.000000e+00 752.0
13 TraesCS3A01G089600 chr3B 93.797 403 16 4 1044 1437 71356113 71355711 5.200000e-167 597.0
14 TraesCS3A01G089600 chr3B 87.108 287 35 2 1018 1303 71328901 71328616 9.740000e-85 324.0
15 TraesCS3A01G089600 chr3B 84.887 311 30 11 752 1054 71364754 71364453 5.910000e-77 298.0
16 TraesCS3A01G089600 chr3B 83.972 287 46 0 1016 1302 141132560 141132846 2.770000e-70 276.0
17 TraesCS3A01G089600 chr3B 82.414 290 50 1 1014 1302 71312803 71313092 4.660000e-63 252.0
18 TraesCS3A01G089600 chr3B 75.166 302 50 18 1532 1820 141133049 141133338 4.930000e-23 119.0
19 TraesCS3A01G089600 chr4D 95.789 285 9 3 145 426 214924144 214923860 9.210000e-125 457.0
20 TraesCS3A01G089600 chr4D 94.444 270 15 0 143 412 104153050 104153319 1.560000e-112 416.0
21 TraesCS3A01G089600 chr6B 94.718 284 14 1 141 424 689716896 689716614 9.270000e-120 440.0
22 TraesCS3A01G089600 chr5A 94.718 284 14 1 139 421 229211862 229211579 9.270000e-120 440.0
23 TraesCS3A01G089600 chr7A 94.545 275 14 1 139 413 436759978 436759705 9.340000e-115 424.0
24 TraesCS3A01G089600 chr6A 94.203 276 14 2 139 413 615559791 615559517 1.210000e-113 420.0
25 TraesCS3A01G089600 chrUn 95.833 48 1 1 2255 2302 372396258 372396304 3.010000e-10 76.8
26 TraesCS3A01G089600 chrUn 95.833 48 1 1 2255 2302 470897617 470897571 3.010000e-10 76.8
27 TraesCS3A01G089600 chr7D 95.745 47 2 0 2256 2302 165597764 165597718 3.010000e-10 76.8
28 TraesCS3A01G089600 chr7D 92.308 52 4 0 2251 2302 17344313 17344364 1.080000e-09 75.0
29 TraesCS3A01G089600 chr5B 92.453 53 3 1 2558 2609 677804655 677804603 1.080000e-09 75.0
30 TraesCS3A01G089600 chr5B 90.909 55 3 2 2252 2306 542675592 542675540 3.900000e-09 73.1
31 TraesCS3A01G089600 chr4B 95.745 47 1 1 2256 2302 578264099 578264144 1.080000e-09 75.0
32 TraesCS3A01G089600 chr2B 94.000 50 2 1 2252 2301 748078448 748078400 1.080000e-09 75.0
33 TraesCS3A01G089600 chr4A 92.308 52 3 1 2559 2609 632909944 632909995 3.900000e-09 73.1
34 TraesCS3A01G089600 chr1B 93.878 49 2 1 2254 2302 619497436 619497389 3.900000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G089600 chr3A 57242876 57245695 2819 True 5208.000000 5208 100.000000 1 2820 1 chr3A.!!$R2 2819
1 TraesCS3A01G089600 chr3D 45685331 45687480 2149 True 1030.333333 1808 93.278667 1 2532 3 chr3D.!!$R2 2531
2 TraesCS3A01G089600 chr3B 71350079 71350762 683 True 752.000000 752 87.265000 1433 2091 1 chr3B.!!$R2 658

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
77 78 0.318699 TCCTCTGCTTCAACGACGTG 60.319 55.0 0.0 0.0 0.00 4.49 F
1014 1021 0.183492 ATAGCATGGCGACCACCAAT 59.817 50.0 0.5 0.0 44.65 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1142 1149 1.073025 ACCATGCGCTCTTTGGTGA 59.927 52.632 19.23 0.0 42.09 4.02 R
2150 2211 0.616964 TCTGCTCCTCATGGCTCTGT 60.617 55.000 0.00 0.0 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 2.971330 CCTCCTCTGATCATTGGCTACT 59.029 50.000 0.00 0.00 0.00 2.57
69 70 2.634453 TCAGTGAATGTCCTCTGCTTCA 59.366 45.455 0.00 0.00 0.00 3.02
71 72 3.188048 CAGTGAATGTCCTCTGCTTCAAC 59.812 47.826 0.00 0.00 30.06 3.18
77 78 0.318699 TCCTCTGCTTCAACGACGTG 60.319 55.000 0.00 0.00 0.00 4.49
84 85 1.596954 GCTTCAACGACGTGTTTGCAT 60.597 47.619 0.00 0.00 39.29 3.96
85 86 2.298300 CTTCAACGACGTGTTTGCATC 58.702 47.619 0.00 0.00 39.29 3.91
86 87 1.577468 TCAACGACGTGTTTGCATCT 58.423 45.000 0.00 0.00 39.29 2.90
87 88 1.525197 TCAACGACGTGTTTGCATCTC 59.475 47.619 0.00 0.00 39.29 2.75
88 89 1.526887 CAACGACGTGTTTGCATCTCT 59.473 47.619 0.00 0.00 39.29 3.10
89 90 1.865865 ACGACGTGTTTGCATCTCTT 58.134 45.000 0.00 0.00 0.00 2.85
90 91 3.021269 ACGACGTGTTTGCATCTCTTA 57.979 42.857 0.00 0.00 0.00 2.10
91 92 2.729882 ACGACGTGTTTGCATCTCTTAC 59.270 45.455 0.00 0.00 0.00 2.34
92 93 2.987149 CGACGTGTTTGCATCTCTTACT 59.013 45.455 0.00 0.00 0.00 2.24
93 94 3.059570 CGACGTGTTTGCATCTCTTACTC 59.940 47.826 0.00 0.00 0.00 2.59
94 95 4.238514 GACGTGTTTGCATCTCTTACTCT 58.761 43.478 0.00 0.00 0.00 3.24
95 96 5.386958 ACGTGTTTGCATCTCTTACTCTA 57.613 39.130 0.00 0.00 0.00 2.43
96 97 5.967088 ACGTGTTTGCATCTCTTACTCTAT 58.033 37.500 0.00 0.00 0.00 1.98
97 98 6.398918 ACGTGTTTGCATCTCTTACTCTATT 58.601 36.000 0.00 0.00 0.00 1.73
98 99 6.874134 ACGTGTTTGCATCTCTTACTCTATTT 59.126 34.615 0.00 0.00 0.00 1.40
99 100 7.148573 ACGTGTTTGCATCTCTTACTCTATTTG 60.149 37.037 0.00 0.00 0.00 2.32
100 101 7.148573 CGTGTTTGCATCTCTTACTCTATTTGT 60.149 37.037 0.00 0.00 0.00 2.83
101 102 7.959651 GTGTTTGCATCTCTTACTCTATTTGTG 59.040 37.037 0.00 0.00 0.00 3.33
102 103 7.661437 TGTTTGCATCTCTTACTCTATTTGTGT 59.339 33.333 0.00 0.00 0.00 3.72
103 104 8.507249 GTTTGCATCTCTTACTCTATTTGTGTT 58.493 33.333 0.00 0.00 0.00 3.32
104 105 8.621532 TTGCATCTCTTACTCTATTTGTGTTT 57.378 30.769 0.00 0.00 0.00 2.83
105 106 8.032952 TGCATCTCTTACTCTATTTGTGTTTG 57.967 34.615 0.00 0.00 0.00 2.93
106 107 7.661437 TGCATCTCTTACTCTATTTGTGTTTGT 59.339 33.333 0.00 0.00 0.00 2.83
107 108 8.171840 GCATCTCTTACTCTATTTGTGTTTGTC 58.828 37.037 0.00 0.00 0.00 3.18
108 109 9.208022 CATCTCTTACTCTATTTGTGTTTGTCA 57.792 33.333 0.00 0.00 0.00 3.58
109 110 8.818141 TCTCTTACTCTATTTGTGTTTGTCAG 57.182 34.615 0.00 0.00 0.00 3.51
110 111 8.421784 TCTCTTACTCTATTTGTGTTTGTCAGT 58.578 33.333 0.00 0.00 0.00 3.41
111 112 8.958119 TCTTACTCTATTTGTGTTTGTCAGTT 57.042 30.769 0.00 0.00 0.00 3.16
112 113 8.826710 TCTTACTCTATTTGTGTTTGTCAGTTG 58.173 33.333 0.00 0.00 0.00 3.16
113 114 8.500753 TTACTCTATTTGTGTTTGTCAGTTGT 57.499 30.769 0.00 0.00 0.00 3.32
114 115 7.016361 ACTCTATTTGTGTTTGTCAGTTGTC 57.984 36.000 0.00 0.00 0.00 3.18
115 116 6.038271 ACTCTATTTGTGTTTGTCAGTTGTCC 59.962 38.462 0.00 0.00 0.00 4.02
116 117 5.883115 TCTATTTGTGTTTGTCAGTTGTCCA 59.117 36.000 0.00 0.00 0.00 4.02
117 118 5.596836 ATTTGTGTTTGTCAGTTGTCCAT 57.403 34.783 0.00 0.00 0.00 3.41
118 119 6.707440 ATTTGTGTTTGTCAGTTGTCCATA 57.293 33.333 0.00 0.00 0.00 2.74
119 120 5.749596 TTGTGTTTGTCAGTTGTCCATAG 57.250 39.130 0.00 0.00 0.00 2.23
120 121 5.029807 TGTGTTTGTCAGTTGTCCATAGA 57.970 39.130 0.00 0.00 0.00 1.98
121 122 5.620206 TGTGTTTGTCAGTTGTCCATAGAT 58.380 37.500 0.00 0.00 0.00 1.98
122 123 5.469760 TGTGTTTGTCAGTTGTCCATAGATG 59.530 40.000 0.00 0.00 0.00 2.90
181 182 5.171147 GCTATTCTAAGCGTGAGTGTAGA 57.829 43.478 0.00 0.00 31.76 2.59
182 183 5.579718 GCTATTCTAAGCGTGAGTGTAGAA 58.420 41.667 0.00 0.00 40.39 2.10
183 184 6.210078 GCTATTCTAAGCGTGAGTGTAGAAT 58.790 40.000 9.14 9.14 44.27 2.40
184 185 7.361127 GCTATTCTAAGCGTGAGTGTAGAATA 58.639 38.462 10.15 10.15 42.34 1.75
186 187 5.171147 TCTAAGCGTGAGTGTAGAATAGC 57.829 43.478 0.00 0.00 0.00 2.97
187 188 4.882427 TCTAAGCGTGAGTGTAGAATAGCT 59.118 41.667 0.00 0.00 34.96 3.32
188 189 4.457834 AAGCGTGAGTGTAGAATAGCTT 57.542 40.909 0.00 0.00 38.65 3.74
189 190 5.578005 AAGCGTGAGTGTAGAATAGCTTA 57.422 39.130 0.00 0.00 41.19 3.09
190 191 5.776173 AGCGTGAGTGTAGAATAGCTTAT 57.224 39.130 0.00 0.00 0.00 1.73
191 192 6.150396 AGCGTGAGTGTAGAATAGCTTATT 57.850 37.500 0.00 0.00 0.00 1.40
192 193 6.210078 AGCGTGAGTGTAGAATAGCTTATTC 58.790 40.000 0.00 0.00 43.77 1.75
214 215 3.795623 ACACCCTGTAGTAACGCTATG 57.204 47.619 0.00 0.00 31.50 2.23
215 216 3.094572 ACACCCTGTAGTAACGCTATGT 58.905 45.455 0.00 0.00 31.50 2.29
216 217 4.272489 ACACCCTGTAGTAACGCTATGTA 58.728 43.478 0.00 0.00 31.50 2.29
217 218 4.096984 ACACCCTGTAGTAACGCTATGTAC 59.903 45.833 0.00 0.00 31.50 2.90
218 219 4.096833 CACCCTGTAGTAACGCTATGTACA 59.903 45.833 0.00 0.00 31.50 2.90
219 220 4.706476 ACCCTGTAGTAACGCTATGTACAA 59.294 41.667 0.00 0.00 31.50 2.41
220 221 5.185635 ACCCTGTAGTAACGCTATGTACAAA 59.814 40.000 0.00 0.00 31.50 2.83
221 222 6.101332 CCCTGTAGTAACGCTATGTACAAAA 58.899 40.000 0.00 0.00 31.50 2.44
222 223 6.759827 CCCTGTAGTAACGCTATGTACAAAAT 59.240 38.462 0.00 0.00 31.50 1.82
223 224 7.042925 CCCTGTAGTAACGCTATGTACAAAATC 60.043 40.741 0.00 0.00 31.50 2.17
224 225 7.705325 CCTGTAGTAACGCTATGTACAAAATCT 59.295 37.037 0.00 0.00 31.50 2.40
225 226 9.726232 CTGTAGTAACGCTATGTACAAAATCTA 57.274 33.333 0.00 0.00 31.50 1.98
226 227 9.726232 TGTAGTAACGCTATGTACAAAATCTAG 57.274 33.333 0.00 0.00 31.50 2.43
227 228 9.727627 GTAGTAACGCTATGTACAAAATCTAGT 57.272 33.333 0.00 0.00 31.50 2.57
233 234 8.589629 ACGCTATGTACAAAATCTAGTAAAACG 58.410 33.333 0.00 0.00 0.00 3.60
234 235 8.054236 CGCTATGTACAAAATCTAGTAAAACGG 58.946 37.037 0.00 0.00 0.00 4.44
235 236 8.876790 GCTATGTACAAAATCTAGTAAAACGGT 58.123 33.333 0.00 0.00 0.00 4.83
237 238 8.611654 ATGTACAAAATCTAGTAAAACGGTGT 57.388 30.769 0.00 0.00 0.00 4.16
238 239 9.709495 ATGTACAAAATCTAGTAAAACGGTGTA 57.291 29.630 0.00 0.00 0.00 2.90
239 240 8.977505 TGTACAAAATCTAGTAAAACGGTGTAC 58.022 33.333 0.00 0.00 38.56 2.90
240 241 8.977505 GTACAAAATCTAGTAAAACGGTGTACA 58.022 33.333 3.08 0.00 38.18 2.90
241 242 8.436046 ACAAAATCTAGTAAAACGGTGTACAA 57.564 30.769 3.08 0.00 0.00 2.41
242 243 8.891720 ACAAAATCTAGTAAAACGGTGTACAAA 58.108 29.630 3.08 0.00 0.00 2.83
243 244 9.719279 CAAAATCTAGTAAAACGGTGTACAAAA 57.281 29.630 3.08 0.00 0.00 2.44
245 246 9.887406 AAATCTAGTAAAACGGTGTACAAAATG 57.113 29.630 3.08 0.00 0.00 2.32
246 247 8.611654 ATCTAGTAAAACGGTGTACAAAATGT 57.388 30.769 3.08 0.00 0.00 2.71
247 248 9.709495 ATCTAGTAAAACGGTGTACAAAATGTA 57.291 29.630 3.08 0.00 0.00 2.29
248 249 9.195411 TCTAGTAAAACGGTGTACAAAATGTAG 57.805 33.333 3.08 0.00 32.84 2.74
249 250 7.790823 AGTAAAACGGTGTACAAAATGTAGT 57.209 32.000 3.08 0.00 32.84 2.73
250 251 8.885494 AGTAAAACGGTGTACAAAATGTAGTA 57.115 30.769 3.08 0.00 32.84 1.82
251 252 9.323985 AGTAAAACGGTGTACAAAATGTAGTAA 57.676 29.630 3.08 0.00 32.84 2.24
254 255 9.667989 AAAACGGTGTACAAAATGTAGTAATTC 57.332 29.630 0.00 0.00 32.84 2.17
255 256 7.052565 ACGGTGTACAAAATGTAGTAATTCG 57.947 36.000 0.00 0.00 32.84 3.34
256 257 6.091169 ACGGTGTACAAAATGTAGTAATTCGG 59.909 38.462 0.00 0.00 32.84 4.30
257 258 6.310956 CGGTGTACAAAATGTAGTAATTCGGA 59.689 38.462 0.00 0.00 32.84 4.55
258 259 7.148606 CGGTGTACAAAATGTAGTAATTCGGAA 60.149 37.037 0.00 0.00 32.84 4.30
259 260 8.505625 GGTGTACAAAATGTAGTAATTCGGAAA 58.494 33.333 0.00 0.00 32.84 3.13
260 261 9.881529 GTGTACAAAATGTAGTAATTCGGAAAA 57.118 29.630 0.00 0.00 32.84 2.29
351 352 6.766944 TGGGTTACCATATTTTGTATGTACCG 59.233 38.462 2.98 0.00 43.37 4.02
352 353 6.767423 GGGTTACCATATTTTGTATGTACCGT 59.233 38.462 2.98 0.00 36.50 4.83
353 354 7.282901 GGGTTACCATATTTTGTATGTACCGTT 59.717 37.037 2.98 0.00 36.50 4.44
354 355 9.323985 GGTTACCATATTTTGTATGTACCGTTA 57.676 33.333 0.00 0.00 0.00 3.18
357 358 8.428186 ACCATATTTTGTATGTACCGTTACTG 57.572 34.615 0.00 0.00 0.00 2.74
358 359 7.496591 ACCATATTTTGTATGTACCGTTACTGG 59.503 37.037 0.00 0.00 0.00 4.00
359 360 7.041644 CCATATTTTGTATGTACCGTTACTGGG 60.042 40.741 0.00 0.00 0.00 4.45
360 361 3.891422 TTGTATGTACCGTTACTGGGG 57.109 47.619 0.00 0.00 0.00 4.96
361 362 2.818921 TGTATGTACCGTTACTGGGGT 58.181 47.619 0.00 0.00 40.35 4.95
362 363 2.496871 TGTATGTACCGTTACTGGGGTG 59.503 50.000 0.00 0.00 37.09 4.61
363 364 1.648116 ATGTACCGTTACTGGGGTGT 58.352 50.000 0.00 0.00 37.09 4.16
364 365 2.300956 TGTACCGTTACTGGGGTGTA 57.699 50.000 0.00 0.00 37.09 2.90
365 366 2.170166 TGTACCGTTACTGGGGTGTAG 58.830 52.381 0.00 0.00 37.09 2.74
366 367 2.224992 TGTACCGTTACTGGGGTGTAGA 60.225 50.000 0.00 0.00 37.09 2.59
367 368 2.014010 ACCGTTACTGGGGTGTAGAA 57.986 50.000 0.00 0.00 34.58 2.10
368 369 2.543635 ACCGTTACTGGGGTGTAGAAT 58.456 47.619 0.00 0.00 34.58 2.40
369 370 3.711863 ACCGTTACTGGGGTGTAGAATA 58.288 45.455 0.00 0.00 34.58 1.75
370 371 4.095946 ACCGTTACTGGGGTGTAGAATAA 58.904 43.478 0.00 0.00 34.58 1.40
371 372 4.161001 ACCGTTACTGGGGTGTAGAATAAG 59.839 45.833 0.00 0.00 34.58 1.73
372 373 4.117685 CGTTACTGGGGTGTAGAATAAGC 58.882 47.826 0.00 0.00 0.00 3.09
373 374 4.142004 CGTTACTGGGGTGTAGAATAAGCT 60.142 45.833 0.00 0.00 0.00 3.74
374 375 5.068198 CGTTACTGGGGTGTAGAATAAGCTA 59.932 44.000 0.00 0.00 0.00 3.32
375 376 6.239232 CGTTACTGGGGTGTAGAATAAGCTAT 60.239 42.308 0.00 0.00 0.00 2.97
376 377 7.506971 GTTACTGGGGTGTAGAATAAGCTATT 58.493 38.462 0.00 0.00 0.00 1.73
377 378 6.176014 ACTGGGGTGTAGAATAAGCTATTC 57.824 41.667 0.00 0.00 43.77 1.75
388 389 6.441099 GAATAAGCTATTCTACACTCACGC 57.559 41.667 0.00 0.00 41.00 5.34
389 390 5.776173 ATAAGCTATTCTACACTCACGCT 57.224 39.130 0.00 0.00 0.00 5.07
390 391 4.457834 AAGCTATTCTACACTCACGCTT 57.542 40.909 0.00 0.00 0.00 4.68
391 392 5.578005 AAGCTATTCTACACTCACGCTTA 57.422 39.130 0.00 0.00 35.01 3.09
392 393 5.176407 AGCTATTCTACACTCACGCTTAG 57.824 43.478 0.00 0.00 0.00 2.18
393 394 4.641094 AGCTATTCTACACTCACGCTTAGT 59.359 41.667 0.00 0.00 0.00 2.24
394 395 5.125739 AGCTATTCTACACTCACGCTTAGTT 59.874 40.000 0.00 0.00 0.00 2.24
395 396 5.805994 GCTATTCTACACTCACGCTTAGTTT 59.194 40.000 0.00 0.00 0.00 2.66
396 397 6.971184 GCTATTCTACACTCACGCTTAGTTTA 59.029 38.462 0.00 0.00 0.00 2.01
397 398 7.166142 GCTATTCTACACTCACGCTTAGTTTAG 59.834 40.741 0.00 0.00 31.41 1.85
398 399 4.730657 TCTACACTCACGCTTAGTTTAGC 58.269 43.478 0.00 0.00 37.80 3.09
399 400 3.380479 ACACTCACGCTTAGTTTAGCA 57.620 42.857 0.00 0.00 41.28 3.49
400 401 3.926616 ACACTCACGCTTAGTTTAGCAT 58.073 40.909 0.00 0.00 41.28 3.79
401 402 4.315803 ACACTCACGCTTAGTTTAGCATT 58.684 39.130 0.00 0.00 41.28 3.56
402 403 5.475719 ACACTCACGCTTAGTTTAGCATTA 58.524 37.500 0.00 0.00 41.28 1.90
403 404 5.347907 ACACTCACGCTTAGTTTAGCATTAC 59.652 40.000 0.00 0.00 41.28 1.89
404 405 5.577164 CACTCACGCTTAGTTTAGCATTACT 59.423 40.000 0.00 0.00 41.28 2.24
405 406 5.805994 ACTCACGCTTAGTTTAGCATTACTC 59.194 40.000 0.00 0.00 41.28 2.59
406 407 5.962433 TCACGCTTAGTTTAGCATTACTCT 58.038 37.500 0.00 0.00 41.28 3.24
407 408 7.092137 TCACGCTTAGTTTAGCATTACTCTA 57.908 36.000 0.00 0.00 41.28 2.43
408 409 7.713750 TCACGCTTAGTTTAGCATTACTCTAT 58.286 34.615 0.00 0.00 41.28 1.98
409 410 8.843262 TCACGCTTAGTTTAGCATTACTCTATA 58.157 33.333 0.00 0.00 41.28 1.31
410 411 9.627395 CACGCTTAGTTTAGCATTACTCTATAT 57.373 33.333 0.00 0.00 41.28 0.86
446 447 4.260985 CAAATGGGCTAAAACATTTCCCC 58.739 43.478 0.00 0.00 43.32 4.81
583 584 9.429359 GGTGTATGTATCCTAGAATTGATCAAG 57.571 37.037 14.54 0.00 0.00 3.02
662 665 8.954350 GGAGCATATTTATCACAAATATGAGCT 58.046 33.333 23.92 17.59 46.10 4.09
677 680 9.478019 CAAATATGAGCTACTAAAAGTTTCGTG 57.522 33.333 0.00 0.00 0.00 4.35
794 798 3.385111 GGATCTCTTGGTAGTGGGTACAG 59.615 52.174 0.00 0.00 32.62 2.74
870 874 5.387788 ACTGATATGCATATTTCTGGCCAA 58.612 37.500 20.00 0.00 0.00 4.52
1005 1012 5.003804 AGGGAACTAATAAATAGCATGGCG 58.996 41.667 0.00 0.00 40.61 5.69
1014 1021 0.183492 ATAGCATGGCGACCACCAAT 59.817 50.000 0.50 0.00 44.65 3.16
1023 1030 1.593006 GCGACCACCAATGAGTTATCG 59.407 52.381 0.00 0.00 0.00 2.92
1142 1149 3.941188 CACCGTGACCACCCTGCT 61.941 66.667 0.00 0.00 0.00 4.24
1245 1252 4.394712 CGCCTCAGCCCGGAAGTT 62.395 66.667 0.73 0.00 34.57 2.66
1305 1312 2.434884 CAGCTCACCAACGGCGAT 60.435 61.111 16.62 0.00 0.00 4.58
1313 1329 1.958715 CCAACGGCGATGTCACACA 60.959 57.895 16.62 0.00 0.00 3.72
1332 1348 3.667261 CACACCGTAACACTAGAAACTCG 59.333 47.826 0.00 0.00 0.00 4.18
1358 1380 2.473816 TGAGCATAGCAGTGAATACGC 58.526 47.619 0.00 0.00 0.00 4.42
1453 1475 1.808390 GCGTCCACATACACGGTCC 60.808 63.158 0.00 0.00 36.50 4.46
1521 1543 3.055719 CTGGGCATCACGCGGTTT 61.056 61.111 12.47 0.00 43.84 3.27
1524 1546 4.036804 GGCATCACGCGGTTTGCA 62.037 61.111 24.07 0.00 46.97 4.08
1607 1629 5.890049 AGAGGTACTTCTACTTGGTGTAGT 58.110 41.667 5.57 0.00 44.07 2.73
1613 1641 4.836736 ACTTCTACTTGGTGTAGTGCCTTA 59.163 41.667 0.00 0.00 46.50 2.69
1621 1649 6.206829 ACTTGGTGTAGTGCCTTAATTTCTTC 59.793 38.462 0.00 0.00 0.00 2.87
1669 1697 4.627284 TTTTCCCTGAACTGAACCGATA 57.373 40.909 0.00 0.00 0.00 2.92
1711 1739 0.326595 TTGAAATGTAGGCGCTGGGA 59.673 50.000 7.64 0.00 0.00 4.37
1721 1749 1.362717 GCGCTGGGAATACTCGCTA 59.637 57.895 0.00 0.00 42.19 4.26
1765 1793 1.444553 GACTGACGTCTTCCTGCCG 60.445 63.158 17.92 0.00 37.19 5.69
1926 1987 3.146066 TGTTTAGCCGTGATGCTTCTTT 58.854 40.909 0.88 0.00 42.75 2.52
1977 2038 8.796475 GTGCATATGAATTAATACAGGGACATT 58.204 33.333 6.97 0.00 0.00 2.71
1994 2055 9.057089 CAGGGACATTTCAATAATCCTAGTTAC 57.943 37.037 0.00 0.00 0.00 2.50
2056 2117 7.404985 CCAATTCACTCGAGATTTGAACTATG 58.595 38.462 21.68 16.28 33.11 2.23
2061 2122 5.004821 CACTCGAGATTTGAACTATGTTCCG 59.995 44.000 21.68 3.84 0.00 4.30
2071 2132 7.747155 TTGAACTATGTTCCGACCATTTTAA 57.253 32.000 7.81 0.00 0.00 1.52
2075 2136 7.754851 ACTATGTTCCGACCATTTTAACTTT 57.245 32.000 0.00 0.00 0.00 2.66
2076 2137 7.590279 ACTATGTTCCGACCATTTTAACTTTG 58.410 34.615 0.00 0.00 0.00 2.77
2078 2139 6.210287 TGTTCCGACCATTTTAACTTTGTT 57.790 33.333 0.00 0.00 0.00 2.83
2079 2140 6.631962 TGTTCCGACCATTTTAACTTTGTTT 58.368 32.000 0.00 0.00 0.00 2.83
2080 2141 7.769220 TGTTCCGACCATTTTAACTTTGTTTA 58.231 30.769 0.00 0.00 0.00 2.01
2081 2142 8.248945 TGTTCCGACCATTTTAACTTTGTTTAA 58.751 29.630 0.00 0.00 0.00 1.52
2082 2143 9.251792 GTTCCGACCATTTTAACTTTGTTTAAT 57.748 29.630 0.00 0.00 0.00 1.40
2134 2195 1.977009 GGGCAGGTTTTTCTCCGGG 60.977 63.158 0.00 0.00 0.00 5.73
2135 2196 1.074248 GGCAGGTTTTTCTCCGGGA 59.926 57.895 0.00 0.00 0.00 5.14
2150 2211 5.152193 TCTCCGGGATTCCATTAATCAGTA 58.848 41.667 0.00 0.00 45.05 2.74
2166 2227 1.118838 AGTACAGAGCCATGAGGAGC 58.881 55.000 0.00 0.00 36.89 4.70
2214 2275 6.552350 AGCTATCCTATTGCATGACCAATTTT 59.448 34.615 0.00 0.00 36.80 1.82
2231 2292 5.698832 CAATTTTGGAGCAAGACGTATCAA 58.301 37.500 0.00 0.00 0.00 2.57
2247 2308 8.948145 AGACGTATCAACATATCTAGATACCAC 58.052 37.037 14.71 4.84 39.58 4.16
2298 2360 1.871039 GCTTACCACATGTGTCACGTT 59.129 47.619 23.79 4.18 0.00 3.99
2359 2421 3.077556 AGGAAGCACGCTCGGGAT 61.078 61.111 0.00 0.00 0.00 3.85
2374 2436 2.914278 TCGGGATCAGGGGTTTAAAAGA 59.086 45.455 0.00 0.00 0.00 2.52
2414 2476 2.430332 GGAGCTGCTGATGTAGTTCTCT 59.570 50.000 7.01 0.00 36.65 3.10
2419 2482 4.671377 CTGCTGATGTAGTTCTCTGAGTC 58.329 47.826 4.32 0.00 0.00 3.36
2424 2487 6.214191 TGATGTAGTTCTCTGAGTCCATTC 57.786 41.667 4.32 0.00 0.00 2.67
2425 2488 5.954752 TGATGTAGTTCTCTGAGTCCATTCT 59.045 40.000 4.32 0.00 0.00 2.40
2520 2583 4.612939 GCTGGGCTCAAAGTTAAGTTAACG 60.613 45.833 17.85 6.49 43.29 3.18
2532 2595 9.546428 AAAGTTAAGTTAACGGCTAGAAAACTA 57.454 29.630 17.85 0.00 43.29 2.24
2533 2596 9.546428 AAGTTAAGTTAACGGCTAGAAAACTAA 57.454 29.630 17.85 0.00 43.29 2.24
2534 2597 9.546428 AGTTAAGTTAACGGCTAGAAAACTAAA 57.454 29.630 17.85 0.00 43.29 1.85
2537 2600 8.843885 AAGTTAACGGCTAGAAAACTAAATCT 57.156 30.769 0.00 0.00 31.61 2.40
2538 2601 8.843885 AGTTAACGGCTAGAAAACTAAATCTT 57.156 30.769 0.00 0.00 30.65 2.40
2539 2602 9.933723 AGTTAACGGCTAGAAAACTAAATCTTA 57.066 29.630 0.00 0.00 30.65 2.10
2577 2640 9.784531 AATAGACATTACCTCCTAATCATGTTG 57.215 33.333 0.00 0.00 0.00 3.33
2578 2641 7.200434 AGACATTACCTCCTAATCATGTTGT 57.800 36.000 0.00 0.00 0.00 3.32
2579 2642 7.275920 AGACATTACCTCCTAATCATGTTGTC 58.724 38.462 0.00 0.00 0.00 3.18
2580 2643 6.357367 ACATTACCTCCTAATCATGTTGTCC 58.643 40.000 0.00 0.00 0.00 4.02
2581 2644 6.069673 ACATTACCTCCTAATCATGTTGTCCA 60.070 38.462 0.00 0.00 0.00 4.02
2582 2645 4.927267 ACCTCCTAATCATGTTGTCCAA 57.073 40.909 0.00 0.00 0.00 3.53
2583 2646 5.255397 ACCTCCTAATCATGTTGTCCAAA 57.745 39.130 0.00 0.00 0.00 3.28
2584 2647 5.831103 ACCTCCTAATCATGTTGTCCAAAT 58.169 37.500 0.00 0.00 0.00 2.32
2585 2648 6.969043 ACCTCCTAATCATGTTGTCCAAATA 58.031 36.000 0.00 0.00 0.00 1.40
2586 2649 7.410174 ACCTCCTAATCATGTTGTCCAAATAA 58.590 34.615 0.00 0.00 0.00 1.40
2587 2650 7.557719 ACCTCCTAATCATGTTGTCCAAATAAG 59.442 37.037 0.00 0.00 0.00 1.73
2588 2651 7.333528 TCCTAATCATGTTGTCCAAATAAGC 57.666 36.000 0.00 0.00 0.00 3.09
2589 2652 7.118723 TCCTAATCATGTTGTCCAAATAAGCT 58.881 34.615 0.00 0.00 0.00 3.74
2590 2653 7.283127 TCCTAATCATGTTGTCCAAATAAGCTC 59.717 37.037 0.00 0.00 0.00 4.09
2591 2654 6.839124 AATCATGTTGTCCAAATAAGCTCA 57.161 33.333 0.00 0.00 0.00 4.26
2592 2655 6.839124 ATCATGTTGTCCAAATAAGCTCAA 57.161 33.333 0.00 0.00 0.00 3.02
2593 2656 6.647334 TCATGTTGTCCAAATAAGCTCAAA 57.353 33.333 0.00 0.00 0.00 2.69
2594 2657 7.048629 TCATGTTGTCCAAATAAGCTCAAAA 57.951 32.000 0.00 0.00 0.00 2.44
2595 2658 7.669427 TCATGTTGTCCAAATAAGCTCAAAAT 58.331 30.769 0.00 0.00 0.00 1.82
2596 2659 8.149647 TCATGTTGTCCAAATAAGCTCAAAATT 58.850 29.630 0.00 0.00 0.00 1.82
2597 2660 8.776470 CATGTTGTCCAAATAAGCTCAAAATTT 58.224 29.630 0.00 0.00 0.00 1.82
2598 2661 8.729805 TGTTGTCCAAATAAGCTCAAAATTTT 57.270 26.923 0.00 0.00 0.00 1.82
2599 2662 8.825745 TGTTGTCCAAATAAGCTCAAAATTTTC 58.174 29.630 0.00 0.00 0.00 2.29
2600 2663 8.825745 GTTGTCCAAATAAGCTCAAAATTTTCA 58.174 29.630 0.00 0.00 0.00 2.69
2601 2664 8.592105 TGTCCAAATAAGCTCAAAATTTTCAG 57.408 30.769 0.00 0.00 0.00 3.02
2602 2665 8.420222 TGTCCAAATAAGCTCAAAATTTTCAGA 58.580 29.630 5.94 0.00 0.00 3.27
2603 2666 9.428097 GTCCAAATAAGCTCAAAATTTTCAGAT 57.572 29.630 5.94 0.00 0.00 2.90
2675 2738 8.977267 ATCAAAATTTGAACCAAAAATCTGGA 57.023 26.923 12.75 0.00 43.95 3.86
2676 2739 8.977267 TCAAAATTTGAACCAAAAATCTGGAT 57.023 26.923 5.87 0.00 36.90 3.41
2677 2740 9.054922 TCAAAATTTGAACCAAAAATCTGGATC 57.945 29.630 5.87 0.00 36.90 3.36
2678 2741 9.059260 CAAAATTTGAACCAAAAATCTGGATCT 57.941 29.630 0.00 0.00 38.69 2.75
2679 2742 8.611654 AAATTTGAACCAAAAATCTGGATCTG 57.388 30.769 0.00 0.00 38.69 2.90
2680 2743 6.729690 TTTGAACCAAAAATCTGGATCTGT 57.270 33.333 0.00 0.00 38.69 3.41
2681 2744 7.831691 TTTGAACCAAAAATCTGGATCTGTA 57.168 32.000 0.00 0.00 38.69 2.74
2682 2745 7.452880 TTGAACCAAAAATCTGGATCTGTAG 57.547 36.000 0.00 0.00 38.69 2.74
2683 2746 5.415701 TGAACCAAAAATCTGGATCTGTAGC 59.584 40.000 0.00 0.00 38.69 3.58
2684 2747 4.922206 ACCAAAAATCTGGATCTGTAGCA 58.078 39.130 0.00 0.00 38.96 3.49
2685 2748 5.324409 ACCAAAAATCTGGATCTGTAGCAA 58.676 37.500 0.00 0.00 38.96 3.91
2686 2749 5.774690 ACCAAAAATCTGGATCTGTAGCAAA 59.225 36.000 0.00 0.00 38.96 3.68
2687 2750 6.095377 CCAAAAATCTGGATCTGTAGCAAAC 58.905 40.000 0.00 0.00 38.96 2.93
2688 2751 6.071728 CCAAAAATCTGGATCTGTAGCAAACT 60.072 38.462 0.00 0.00 38.96 2.66
2689 2752 7.121168 CCAAAAATCTGGATCTGTAGCAAACTA 59.879 37.037 0.00 0.00 38.96 2.24
2690 2753 7.856145 AAAATCTGGATCTGTAGCAAACTAG 57.144 36.000 0.00 0.00 0.00 2.57
2691 2754 4.392921 TCTGGATCTGTAGCAAACTAGC 57.607 45.455 0.00 0.00 0.00 3.42
2692 2755 3.133003 TCTGGATCTGTAGCAAACTAGCC 59.867 47.826 0.00 0.00 34.23 3.93
2693 2756 2.837591 TGGATCTGTAGCAAACTAGCCA 59.162 45.455 0.00 0.00 34.23 4.75
2694 2757 3.263170 TGGATCTGTAGCAAACTAGCCAA 59.737 43.478 0.00 0.00 30.49 4.52
2695 2758 4.080356 TGGATCTGTAGCAAACTAGCCAAT 60.080 41.667 0.00 0.00 30.49 3.16
2696 2759 5.130311 TGGATCTGTAGCAAACTAGCCAATA 59.870 40.000 0.00 0.00 30.49 1.90
2697 2760 6.183361 TGGATCTGTAGCAAACTAGCCAATAT 60.183 38.462 0.00 0.00 30.49 1.28
2698 2761 6.370166 GGATCTGTAGCAAACTAGCCAATATC 59.630 42.308 0.00 0.00 34.23 1.63
2699 2762 6.233905 TCTGTAGCAAACTAGCCAATATCA 57.766 37.500 0.00 0.00 34.23 2.15
2700 2763 6.049149 TCTGTAGCAAACTAGCCAATATCAC 58.951 40.000 0.00 0.00 34.23 3.06
2701 2764 5.123227 TGTAGCAAACTAGCCAATATCACC 58.877 41.667 0.00 0.00 34.23 4.02
2702 2765 4.510167 AGCAAACTAGCCAATATCACCT 57.490 40.909 0.00 0.00 34.23 4.00
2703 2766 5.630415 AGCAAACTAGCCAATATCACCTA 57.370 39.130 0.00 0.00 34.23 3.08
2704 2767 6.001449 AGCAAACTAGCCAATATCACCTAA 57.999 37.500 0.00 0.00 34.23 2.69
2705 2768 6.605119 AGCAAACTAGCCAATATCACCTAAT 58.395 36.000 0.00 0.00 34.23 1.73
2706 2769 7.062957 AGCAAACTAGCCAATATCACCTAATT 58.937 34.615 0.00 0.00 34.23 1.40
2707 2770 7.561356 AGCAAACTAGCCAATATCACCTAATTT 59.439 33.333 0.00 0.00 34.23 1.82
2708 2771 8.846211 GCAAACTAGCCAATATCACCTAATTTA 58.154 33.333 0.00 0.00 0.00 1.40
2760 2823 8.451908 AACTAGATTACTATTTGGGAACATGC 57.548 34.615 0.00 0.00 42.32 4.06
2761 2824 7.573710 ACTAGATTACTATTTGGGAACATGCA 58.426 34.615 0.00 0.00 42.32 3.96
2762 2825 6.949352 AGATTACTATTTGGGAACATGCAG 57.051 37.500 0.00 0.00 42.32 4.41
2763 2826 6.426587 AGATTACTATTTGGGAACATGCAGT 58.573 36.000 0.00 0.00 42.32 4.40
2764 2827 7.573710 AGATTACTATTTGGGAACATGCAGTA 58.426 34.615 0.00 0.00 42.32 2.74
2765 2828 8.220559 AGATTACTATTTGGGAACATGCAGTAT 58.779 33.333 0.00 0.00 42.32 2.12
2766 2829 8.766994 ATTACTATTTGGGAACATGCAGTATT 57.233 30.769 0.00 0.00 42.32 1.89
2767 2830 8.588290 TTACTATTTGGGAACATGCAGTATTT 57.412 30.769 0.00 0.00 42.32 1.40
2768 2831 6.866480 ACTATTTGGGAACATGCAGTATTTG 58.134 36.000 0.00 0.00 42.32 2.32
2769 2832 3.591196 TTGGGAACATGCAGTATTTGC 57.409 42.857 0.00 0.00 45.29 3.68
2770 2833 2.806434 TGGGAACATGCAGTATTTGCT 58.194 42.857 0.00 0.00 44.97 3.91
2771 2834 2.492881 TGGGAACATGCAGTATTTGCTG 59.507 45.455 0.00 0.00 44.97 4.41
2772 2835 4.685501 TGGGAACATGCAGTATTTGCTGG 61.686 47.826 0.00 0.00 44.97 4.85
2773 2836 6.879456 TGGGAACATGCAGTATTTGCTGGA 62.879 45.833 0.00 0.00 44.97 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 70 1.865865 AGAGATGCAAACACGTCGTT 58.134 45.000 0.00 0.00 40.50 3.85
71 72 2.987149 AGTAAGAGATGCAAACACGTCG 59.013 45.455 0.00 0.00 0.00 5.12
77 78 8.034058 ACACAAATAGAGTAAGAGATGCAAAC 57.966 34.615 0.00 0.00 0.00 2.93
84 85 8.421784 ACTGACAAACACAAATAGAGTAAGAGA 58.578 33.333 0.00 0.00 0.00 3.10
85 86 8.594881 ACTGACAAACACAAATAGAGTAAGAG 57.405 34.615 0.00 0.00 0.00 2.85
86 87 8.826710 CAACTGACAAACACAAATAGAGTAAGA 58.173 33.333 0.00 0.00 0.00 2.10
87 88 8.612619 ACAACTGACAAACACAAATAGAGTAAG 58.387 33.333 0.00 0.00 0.00 2.34
88 89 8.500753 ACAACTGACAAACACAAATAGAGTAA 57.499 30.769 0.00 0.00 0.00 2.24
89 90 7.225931 GGACAACTGACAAACACAAATAGAGTA 59.774 37.037 0.00 0.00 0.00 2.59
90 91 6.038271 GGACAACTGACAAACACAAATAGAGT 59.962 38.462 0.00 0.00 0.00 3.24
91 92 6.038161 TGGACAACTGACAAACACAAATAGAG 59.962 38.462 0.00 0.00 0.00 2.43
92 93 5.883115 TGGACAACTGACAAACACAAATAGA 59.117 36.000 0.00 0.00 0.00 1.98
93 94 6.130298 TGGACAACTGACAAACACAAATAG 57.870 37.500 0.00 0.00 0.00 1.73
94 95 6.707440 ATGGACAACTGACAAACACAAATA 57.293 33.333 0.00 0.00 0.00 1.40
95 96 5.596836 ATGGACAACTGACAAACACAAAT 57.403 34.783 0.00 0.00 0.00 2.32
96 97 5.883115 TCTATGGACAACTGACAAACACAAA 59.117 36.000 0.00 0.00 0.00 2.83
97 98 5.432645 TCTATGGACAACTGACAAACACAA 58.567 37.500 0.00 0.00 0.00 3.33
98 99 5.029807 TCTATGGACAACTGACAAACACA 57.970 39.130 0.00 0.00 0.00 3.72
99 100 5.931532 CATCTATGGACAACTGACAAACAC 58.068 41.667 0.00 0.00 0.00 3.32
159 160 5.171147 TCTACACTCACGCTTAGAATAGC 57.829 43.478 0.00 0.00 37.80 2.97
160 161 8.942669 CTATTCTACACTCACGCTTAGAATAG 57.057 38.462 16.88 16.88 45.82 1.73
161 162 7.228906 AGCTATTCTACACTCACGCTTAGAATA 59.771 37.037 8.77 8.77 40.29 1.75
162 163 6.039941 AGCTATTCTACACTCACGCTTAGAAT 59.960 38.462 7.62 7.62 41.79 2.40
163 164 5.357314 AGCTATTCTACACTCACGCTTAGAA 59.643 40.000 0.00 0.00 35.55 2.10
164 165 4.882427 AGCTATTCTACACTCACGCTTAGA 59.118 41.667 0.00 0.00 0.00 2.10
165 166 5.176407 AGCTATTCTACACTCACGCTTAG 57.824 43.478 0.00 0.00 0.00 2.18
166 167 5.578005 AAGCTATTCTACACTCACGCTTA 57.422 39.130 0.00 0.00 35.01 3.09
167 168 4.457834 AAGCTATTCTACACTCACGCTT 57.542 40.909 0.00 0.00 0.00 4.68
168 169 5.776173 ATAAGCTATTCTACACTCACGCT 57.224 39.130 0.00 0.00 0.00 5.07
169 170 6.441099 GAATAAGCTATTCTACACTCACGC 57.559 41.667 0.00 0.00 41.00 5.34
193 194 4.272489 ACATAGCGTTACTACAGGGTGTA 58.728 43.478 0.00 0.00 32.32 2.90
194 195 3.094572 ACATAGCGTTACTACAGGGTGT 58.905 45.455 0.00 0.00 32.32 4.16
195 196 3.795623 ACATAGCGTTACTACAGGGTG 57.204 47.619 0.00 0.00 32.32 4.61
196 197 4.272489 TGTACATAGCGTTACTACAGGGT 58.728 43.478 0.00 0.00 32.32 4.34
197 198 4.906065 TGTACATAGCGTTACTACAGGG 57.094 45.455 0.00 0.00 32.32 4.45
198 199 7.705325 AGATTTTGTACATAGCGTTACTACAGG 59.295 37.037 0.00 0.00 32.32 4.00
199 200 8.630278 AGATTTTGTACATAGCGTTACTACAG 57.370 34.615 0.00 0.00 32.32 2.74
200 201 9.726232 CTAGATTTTGTACATAGCGTTACTACA 57.274 33.333 0.00 0.00 32.32 2.74
201 202 9.727627 ACTAGATTTTGTACATAGCGTTACTAC 57.272 33.333 0.00 0.00 32.32 2.73
207 208 8.589629 CGTTTTACTAGATTTTGTACATAGCGT 58.410 33.333 0.00 0.00 0.00 5.07
208 209 8.054236 CCGTTTTACTAGATTTTGTACATAGCG 58.946 37.037 0.00 0.00 0.00 4.26
209 210 8.876790 ACCGTTTTACTAGATTTTGTACATAGC 58.123 33.333 0.00 0.00 0.00 2.97
211 212 9.709495 ACACCGTTTTACTAGATTTTGTACATA 57.291 29.630 0.00 0.00 0.00 2.29
212 213 8.611654 ACACCGTTTTACTAGATTTTGTACAT 57.388 30.769 0.00 0.00 0.00 2.29
213 214 8.977505 GTACACCGTTTTACTAGATTTTGTACA 58.022 33.333 0.00 0.00 36.93 2.90
214 215 8.977505 TGTACACCGTTTTACTAGATTTTGTAC 58.022 33.333 0.00 0.00 37.28 2.90
215 216 9.539825 TTGTACACCGTTTTACTAGATTTTGTA 57.460 29.630 0.00 0.00 0.00 2.41
216 217 8.436046 TTGTACACCGTTTTACTAGATTTTGT 57.564 30.769 0.00 0.00 0.00 2.83
217 218 9.719279 TTTTGTACACCGTTTTACTAGATTTTG 57.281 29.630 0.00 0.00 0.00 2.44
219 220 9.887406 CATTTTGTACACCGTTTTACTAGATTT 57.113 29.630 0.00 0.00 0.00 2.17
220 221 9.059260 ACATTTTGTACACCGTTTTACTAGATT 57.941 29.630 0.00 0.00 0.00 2.40
221 222 8.611654 ACATTTTGTACACCGTTTTACTAGAT 57.388 30.769 0.00 0.00 0.00 1.98
222 223 9.195411 CTACATTTTGTACACCGTTTTACTAGA 57.805 33.333 0.00 0.00 0.00 2.43
223 224 8.981647 ACTACATTTTGTACACCGTTTTACTAG 58.018 33.333 0.00 0.00 0.00 2.57
224 225 8.885494 ACTACATTTTGTACACCGTTTTACTA 57.115 30.769 0.00 0.00 0.00 1.82
225 226 7.790823 ACTACATTTTGTACACCGTTTTACT 57.209 32.000 0.00 0.00 0.00 2.24
228 229 9.667989 GAATTACTACATTTTGTACACCGTTTT 57.332 29.630 0.00 0.00 0.00 2.43
229 230 8.011106 CGAATTACTACATTTTGTACACCGTTT 58.989 33.333 0.00 0.00 0.00 3.60
230 231 7.360269 CCGAATTACTACATTTTGTACACCGTT 60.360 37.037 0.00 0.00 0.00 4.44
231 232 6.091169 CCGAATTACTACATTTTGTACACCGT 59.909 38.462 0.00 0.00 0.00 4.83
232 233 6.310956 TCCGAATTACTACATTTTGTACACCG 59.689 38.462 0.00 0.00 0.00 4.94
233 234 7.599630 TCCGAATTACTACATTTTGTACACC 57.400 36.000 0.00 0.00 0.00 4.16
234 235 9.881529 TTTTCCGAATTACTACATTTTGTACAC 57.118 29.630 0.00 0.00 0.00 2.90
317 318 9.756571 ACAAAATATGGTAACCCACTATGTAAA 57.243 29.630 0.00 0.00 45.65 2.01
320 321 9.349713 CATACAAAATATGGTAACCCACTATGT 57.650 33.333 0.00 0.00 45.65 2.29
321 322 9.349713 ACATACAAAATATGGTAACCCACTATG 57.650 33.333 0.00 0.00 45.65 2.23
323 324 9.835389 GTACATACAAAATATGGTAACCCACTA 57.165 33.333 0.00 0.00 45.65 2.74
324 325 7.776500 GGTACATACAAAATATGGTAACCCACT 59.224 37.037 0.00 0.00 45.65 4.00
325 326 7.254863 CGGTACATACAAAATATGGTAACCCAC 60.255 40.741 0.00 0.00 45.65 4.61
327 328 6.767423 ACGGTACATACAAAATATGGTAACCC 59.233 38.462 0.00 0.00 0.00 4.11
328 329 7.790823 ACGGTACATACAAAATATGGTAACC 57.209 36.000 0.00 3.21 0.00 2.85
331 332 9.531942 CAGTAACGGTACATACAAAATATGGTA 57.468 33.333 14.15 0.00 32.12 3.25
332 333 7.496591 CCAGTAACGGTACATACAAAATATGGT 59.503 37.037 14.15 0.00 32.12 3.55
333 334 7.041644 CCCAGTAACGGTACATACAAAATATGG 60.042 40.741 14.15 7.27 32.12 2.74
334 335 7.041644 CCCCAGTAACGGTACATACAAAATATG 60.042 40.741 14.15 0.00 32.12 1.78
335 336 6.993902 CCCCAGTAACGGTACATACAAAATAT 59.006 38.462 14.15 0.00 32.12 1.28
336 337 6.070309 ACCCCAGTAACGGTACATACAAAATA 60.070 38.462 14.15 0.00 32.12 1.40
337 338 5.187687 CCCCAGTAACGGTACATACAAAAT 58.812 41.667 14.15 0.00 32.12 1.82
338 339 4.041444 ACCCCAGTAACGGTACATACAAAA 59.959 41.667 14.15 0.00 32.12 2.44
339 340 3.582208 ACCCCAGTAACGGTACATACAAA 59.418 43.478 14.15 0.00 32.12 2.83
340 341 3.055963 CACCCCAGTAACGGTACATACAA 60.056 47.826 14.15 0.00 32.12 2.41
341 342 2.496871 CACCCCAGTAACGGTACATACA 59.503 50.000 14.15 0.00 32.12 2.29
342 343 2.497273 ACACCCCAGTAACGGTACATAC 59.503 50.000 14.15 0.00 32.12 2.39
343 344 2.818921 ACACCCCAGTAACGGTACATA 58.181 47.619 14.15 0.00 32.12 2.29
344 345 1.648116 ACACCCCAGTAACGGTACAT 58.352 50.000 14.15 0.00 32.12 2.29
345 346 2.170166 CTACACCCCAGTAACGGTACA 58.830 52.381 14.15 0.00 32.12 2.90
346 347 2.446435 TCTACACCCCAGTAACGGTAC 58.554 52.381 1.22 1.22 0.00 3.34
347 348 2.897271 TCTACACCCCAGTAACGGTA 57.103 50.000 0.00 0.00 0.00 4.02
348 349 2.014010 TTCTACACCCCAGTAACGGT 57.986 50.000 0.00 0.00 0.00 4.83
349 350 4.690122 CTTATTCTACACCCCAGTAACGG 58.310 47.826 0.00 0.00 0.00 4.44
350 351 4.117685 GCTTATTCTACACCCCAGTAACG 58.882 47.826 0.00 0.00 0.00 3.18
351 352 5.354842 AGCTTATTCTACACCCCAGTAAC 57.645 43.478 0.00 0.00 0.00 2.50
352 353 7.685849 AATAGCTTATTCTACACCCCAGTAA 57.314 36.000 0.00 0.00 0.00 2.24
353 354 7.299246 GAATAGCTTATTCTACACCCCAGTA 57.701 40.000 0.00 0.00 41.00 2.74
354 355 6.176014 GAATAGCTTATTCTACACCCCAGT 57.824 41.667 0.00 0.00 41.00 4.00
365 366 6.210078 AGCGTGAGTGTAGAATAGCTTATTC 58.790 40.000 0.00 0.00 43.77 1.75
366 367 6.150396 AGCGTGAGTGTAGAATAGCTTATT 57.850 37.500 0.00 0.00 0.00 1.40
367 368 5.776173 AGCGTGAGTGTAGAATAGCTTAT 57.224 39.130 0.00 0.00 0.00 1.73
368 369 5.578005 AAGCGTGAGTGTAGAATAGCTTA 57.422 39.130 0.00 0.00 41.19 3.09
369 370 4.457834 AAGCGTGAGTGTAGAATAGCTT 57.542 40.909 0.00 0.00 38.65 3.74
370 371 4.641094 ACTAAGCGTGAGTGTAGAATAGCT 59.359 41.667 0.00 0.00 34.96 3.32
371 372 4.922719 ACTAAGCGTGAGTGTAGAATAGC 58.077 43.478 0.00 0.00 0.00 2.97
372 373 7.166142 GCTAAACTAAGCGTGAGTGTAGAATAG 59.834 40.741 13.88 0.00 37.03 1.73
373 374 6.971184 GCTAAACTAAGCGTGAGTGTAGAATA 59.029 38.462 13.88 0.00 37.03 1.75
374 375 5.805994 GCTAAACTAAGCGTGAGTGTAGAAT 59.194 40.000 13.88 0.00 37.03 2.40
375 376 5.159209 GCTAAACTAAGCGTGAGTGTAGAA 58.841 41.667 13.88 0.00 37.03 2.10
376 377 4.216902 TGCTAAACTAAGCGTGAGTGTAGA 59.783 41.667 13.88 1.50 45.85 2.59
377 378 4.482386 TGCTAAACTAAGCGTGAGTGTAG 58.518 43.478 7.98 7.98 45.85 2.74
378 379 4.508461 TGCTAAACTAAGCGTGAGTGTA 57.492 40.909 0.00 0.00 45.85 2.90
379 380 3.380479 TGCTAAACTAAGCGTGAGTGT 57.620 42.857 0.00 0.00 45.85 3.55
380 381 4.928661 AATGCTAAACTAAGCGTGAGTG 57.071 40.909 0.00 0.00 45.85 3.51
381 382 5.721232 AGTAATGCTAAACTAAGCGTGAGT 58.279 37.500 0.00 0.00 45.85 3.41
382 383 6.037098 AGAGTAATGCTAAACTAAGCGTGAG 58.963 40.000 0.00 0.00 45.85 3.51
383 384 5.962433 AGAGTAATGCTAAACTAAGCGTGA 58.038 37.500 0.00 0.00 45.85 4.35
384 385 7.932120 ATAGAGTAATGCTAAACTAAGCGTG 57.068 36.000 0.00 0.00 45.85 5.34
418 419 9.660180 GGAAATGTTTTAGCCCATTTGTAAATA 57.340 29.630 2.63 0.00 40.40 1.40
419 420 7.609918 GGGAAATGTTTTAGCCCATTTGTAAAT 59.390 33.333 2.63 0.00 40.40 1.40
420 421 6.937465 GGGAAATGTTTTAGCCCATTTGTAAA 59.063 34.615 2.63 0.00 40.40 2.01
446 447 6.692681 CAGCCAACGGTTTTGAATATCAATAG 59.307 38.462 0.00 0.00 36.11 1.73
508 509 3.433598 GGGGTAGTGCATGCATTTCTCTA 60.434 47.826 25.64 16.67 0.00 2.43
677 680 6.249260 CGCAAGCTATGAAACACTAAATCAAC 59.751 38.462 0.00 0.00 0.00 3.18
763 766 3.367280 ACCAAGAGATCCCCATATGGA 57.633 47.619 24.00 4.24 39.18 3.41
816 820 6.760770 CCAACAGCTGTTTTAAAAAGATGGAA 59.239 34.615 29.23 0.00 35.83 3.53
828 832 5.376625 TCAGTATCTTCCAACAGCTGTTTT 58.623 37.500 29.23 7.38 35.83 2.43
834 838 5.059161 TGCATATCAGTATCTTCCAACAGC 58.941 41.667 0.00 0.00 0.00 4.40
993 1000 0.034574 TGGTGGTCGCCATGCTATTT 60.035 50.000 0.00 0.00 35.28 1.40
1005 1012 4.693283 TCATCGATAACTCATTGGTGGTC 58.307 43.478 0.00 0.00 30.82 4.02
1014 1021 3.954258 TCAGGAGCTTCATCGATAACTCA 59.046 43.478 0.00 0.00 0.00 3.41
1023 1030 2.468831 GTGTCGATCAGGAGCTTCATC 58.531 52.381 0.00 0.00 0.00 2.92
1142 1149 1.073025 ACCATGCGCTCTTTGGTGA 59.927 52.632 19.23 0.00 42.09 4.02
1295 1302 1.958715 TGTGTGACATCGCCGTTGG 60.959 57.895 0.00 0.00 0.00 3.77
1305 1312 2.950975 TCTAGTGTTACGGTGTGTGACA 59.049 45.455 0.00 0.00 43.98 3.58
1313 1329 4.515191 TGTACGAGTTTCTAGTGTTACGGT 59.485 41.667 0.00 0.00 0.00 4.83
1332 1348 5.998454 ATTCACTGCTATGCTCATTGTAC 57.002 39.130 0.00 0.00 0.00 2.90
1516 1538 4.980903 GCCGCACTGTGCAAACCG 62.981 66.667 29.86 14.50 45.36 4.44
1524 1546 3.923864 TCCTTGACGCCGCACTGT 61.924 61.111 0.00 0.00 0.00 3.55
1607 1629 2.026262 AGGCTCGGAAGAAATTAAGGCA 60.026 45.455 0.00 0.00 41.32 4.75
1613 1641 4.145052 AGTTCAAAGGCTCGGAAGAAATT 58.855 39.130 1.50 0.00 41.32 1.82
1621 1649 2.484264 CACCTAAAGTTCAAAGGCTCGG 59.516 50.000 0.00 0.00 33.42 4.63
1669 1697 8.997323 TCAAAATCCAACGCATTAAAATCAATT 58.003 25.926 0.00 0.00 0.00 2.32
1711 1739 4.024670 ACTTGAGGGAAGTAGCGAGTATT 58.975 43.478 0.00 0.00 43.54 1.89
1765 1793 3.893795 GCAGCGAGCATTCTTCTTC 57.106 52.632 0.00 0.00 44.79 2.87
1926 1987 2.622942 GGCAGAATCACAACAGAAACCA 59.377 45.455 0.00 0.00 0.00 3.67
1977 2038 9.609346 GCAAAGGTAGTAACTAGGATTATTGAA 57.391 33.333 0.00 0.00 0.00 2.69
1994 2055 2.704572 CTCCTCACCAAGCAAAGGTAG 58.295 52.381 0.00 0.00 37.23 3.18
2056 2117 8.631676 TTAAACAAAGTTAAAATGGTCGGAAC 57.368 30.769 0.00 0.00 0.00 3.62
2092 2153 9.895138 CCCTAACTTTATTAAGCAAAGGTAGTA 57.105 33.333 23.11 9.57 45.61 1.82
2093 2154 7.338703 GCCCTAACTTTATTAAGCAAAGGTAGT 59.661 37.037 23.11 9.16 45.61 2.73
2094 2155 7.338449 TGCCCTAACTTTATTAAGCAAAGGTAG 59.662 37.037 20.54 20.54 46.19 3.18
2095 2156 7.176490 TGCCCTAACTTTATTAAGCAAAGGTA 58.824 34.615 13.84 11.36 37.32 3.08
2096 2157 6.014012 TGCCCTAACTTTATTAAGCAAAGGT 58.986 36.000 13.84 10.93 37.32 3.50
2097 2158 6.405842 CCTGCCCTAACTTTATTAAGCAAAGG 60.406 42.308 13.84 0.00 37.32 3.11
2098 2159 6.152831 ACCTGCCCTAACTTTATTAAGCAAAG 59.847 38.462 9.64 9.64 38.65 2.77
2099 2160 6.014012 ACCTGCCCTAACTTTATTAAGCAAA 58.986 36.000 0.00 0.00 34.60 3.68
2100 2161 5.576128 ACCTGCCCTAACTTTATTAAGCAA 58.424 37.500 0.00 0.00 34.60 3.91
2101 2162 5.187621 ACCTGCCCTAACTTTATTAAGCA 57.812 39.130 0.00 0.00 34.60 3.91
2102 2163 6.525578 AAACCTGCCCTAACTTTATTAAGC 57.474 37.500 0.00 0.00 34.60 3.09
2103 2164 8.803235 AGAAAAACCTGCCCTAACTTTATTAAG 58.197 33.333 0.00 0.00 37.40 1.85
2112 2173 1.810755 CGGAGAAAAACCTGCCCTAAC 59.189 52.381 0.00 0.00 0.00 2.34
2134 2195 6.291377 TGGCTCTGTACTGATTAATGGAATC 58.709 40.000 2.62 0.00 43.84 2.52
2135 2196 6.252599 TGGCTCTGTACTGATTAATGGAAT 57.747 37.500 2.62 0.00 0.00 3.01
2150 2211 0.616964 TCTGCTCCTCATGGCTCTGT 60.617 55.000 0.00 0.00 0.00 3.41
2166 2227 6.238593 GCTTGCTTTTCTGTTATATCCCTCTG 60.239 42.308 0.00 0.00 0.00 3.35
2214 2275 3.610040 ATGTTGATACGTCTTGCTCCA 57.390 42.857 0.00 0.00 0.00 3.86
2225 2286 7.976734 GGCTGTGGTATCTAGATATGTTGATAC 59.023 40.741 19.45 19.45 40.00 2.24
2231 2292 7.380423 AAAAGGCTGTGGTATCTAGATATGT 57.620 36.000 15.43 0.00 0.00 2.29
2269 2331 4.527816 ACACATGTGGTAAGCAATCCAAAT 59.472 37.500 28.64 0.00 35.38 2.32
2283 2345 1.526887 GAGACAACGTGACACATGTGG 59.473 52.381 28.64 13.84 33.54 4.17
2298 2360 5.011125 GCAAAGGCTATGGTATCTAGAGACA 59.989 44.000 18.70 7.91 36.96 3.41
2374 2436 2.173143 TCCTACTCACCAACCGGTTTTT 59.827 45.455 19.55 4.02 46.31 1.94
2414 2476 6.723515 CCTATAGAGAATGGAGAATGGACTCA 59.276 42.308 0.00 0.00 38.51 3.41
2419 2482 6.942163 TTCCCTATAGAGAATGGAGAATGG 57.058 41.667 0.00 0.00 0.00 3.16
2424 2487 6.537355 TGCATTTTCCCTATAGAGAATGGAG 58.463 40.000 0.00 0.00 38.28 3.86
2425 2488 6.514012 TGCATTTTCCCTATAGAGAATGGA 57.486 37.500 0.00 4.73 38.28 3.41
2488 2551 2.014010 TTGAGCCCAGCCTTCATTTT 57.986 45.000 0.00 0.00 0.00 1.82
2489 2552 1.897802 CTTTGAGCCCAGCCTTCATTT 59.102 47.619 0.00 0.00 0.00 2.32
2490 2553 1.203100 ACTTTGAGCCCAGCCTTCATT 60.203 47.619 0.00 0.00 0.00 2.57
2499 2562 3.816523 CCGTTAACTTAACTTTGAGCCCA 59.183 43.478 3.71 0.00 36.54 5.36
2540 2603 9.457436 GGAGGTAATGTCTATTTACCTTCAAAA 57.543 33.333 14.48 0.00 40.86 2.44
2541 2604 8.832735 AGGAGGTAATGTCTATTTACCTTCAAA 58.167 33.333 18.56 0.00 40.86 2.69
2542 2605 8.388656 AGGAGGTAATGTCTATTTACCTTCAA 57.611 34.615 18.56 0.00 40.86 2.69
2543 2606 7.989947 AGGAGGTAATGTCTATTTACCTTCA 57.010 36.000 18.56 0.00 40.86 3.02
2546 2609 9.670442 TGATTAGGAGGTAATGTCTATTTACCT 57.330 33.333 13.48 13.48 43.22 3.08
2551 2614 9.784531 CAACATGATTAGGAGGTAATGTCTATT 57.215 33.333 0.00 0.00 30.93 1.73
2552 2615 8.938883 ACAACATGATTAGGAGGTAATGTCTAT 58.061 33.333 0.00 0.00 30.93 1.98
2553 2616 8.319057 ACAACATGATTAGGAGGTAATGTCTA 57.681 34.615 0.00 0.00 30.93 2.59
2554 2617 7.200434 ACAACATGATTAGGAGGTAATGTCT 57.800 36.000 0.00 0.00 30.93 3.41
2555 2618 6.483640 GGACAACATGATTAGGAGGTAATGTC 59.516 42.308 0.00 0.00 30.93 3.06
2556 2619 6.069673 TGGACAACATGATTAGGAGGTAATGT 60.070 38.462 0.00 0.00 30.93 2.71
2557 2620 6.356556 TGGACAACATGATTAGGAGGTAATG 58.643 40.000 0.00 0.00 30.93 1.90
2558 2621 6.575244 TGGACAACATGATTAGGAGGTAAT 57.425 37.500 0.00 0.00 33.71 1.89
2559 2622 6.381498 TTGGACAACATGATTAGGAGGTAA 57.619 37.500 0.00 0.00 0.00 2.85
2560 2623 6.381498 TTTGGACAACATGATTAGGAGGTA 57.619 37.500 0.00 0.00 0.00 3.08
2561 2624 4.927267 TTGGACAACATGATTAGGAGGT 57.073 40.909 0.00 0.00 0.00 3.85
2562 2625 7.469181 GCTTATTTGGACAACATGATTAGGAGG 60.469 40.741 0.00 0.00 0.00 4.30
2563 2626 7.284034 AGCTTATTTGGACAACATGATTAGGAG 59.716 37.037 0.00 0.00 0.00 3.69
2564 2627 7.118723 AGCTTATTTGGACAACATGATTAGGA 58.881 34.615 0.00 0.00 0.00 2.94
2565 2628 7.067372 TGAGCTTATTTGGACAACATGATTAGG 59.933 37.037 0.00 0.00 0.00 2.69
2566 2629 7.988737 TGAGCTTATTTGGACAACATGATTAG 58.011 34.615 0.00 0.00 0.00 1.73
2567 2630 7.936496 TGAGCTTATTTGGACAACATGATTA 57.064 32.000 0.00 0.00 0.00 1.75
2568 2631 6.839124 TGAGCTTATTTGGACAACATGATT 57.161 33.333 0.00 0.00 0.00 2.57
2569 2632 6.839124 TTGAGCTTATTTGGACAACATGAT 57.161 33.333 0.00 0.00 0.00 2.45
2570 2633 6.647334 TTTGAGCTTATTTGGACAACATGA 57.353 33.333 0.00 0.00 0.00 3.07
2571 2634 7.894376 ATTTTGAGCTTATTTGGACAACATG 57.106 32.000 0.00 0.00 0.00 3.21
2572 2635 8.907222 AAATTTTGAGCTTATTTGGACAACAT 57.093 26.923 0.00 0.00 0.00 2.71
2573 2636 8.729805 AAAATTTTGAGCTTATTTGGACAACA 57.270 26.923 1.75 0.00 0.00 3.33
2574 2637 8.825745 TGAAAATTTTGAGCTTATTTGGACAAC 58.174 29.630 8.47 0.00 0.00 3.32
2575 2638 8.954950 TGAAAATTTTGAGCTTATTTGGACAA 57.045 26.923 8.47 0.00 0.00 3.18
2576 2639 8.420222 TCTGAAAATTTTGAGCTTATTTGGACA 58.580 29.630 12.03 0.00 0.00 4.02
2577 2640 8.816640 TCTGAAAATTTTGAGCTTATTTGGAC 57.183 30.769 12.03 0.00 0.00 4.02
2650 2713 8.977267 TCCAGATTTTTGGTTCAAATTTTGAT 57.023 26.923 12.39 0.00 39.35 2.57
2651 2714 8.977267 ATCCAGATTTTTGGTTCAAATTTTGA 57.023 26.923 7.74 7.74 39.35 2.69
2652 2715 9.059260 AGATCCAGATTTTTGGTTCAAATTTTG 57.941 29.630 2.59 2.59 38.74 2.44
2653 2716 9.059260 CAGATCCAGATTTTTGGTTCAAATTTT 57.941 29.630 6.05 0.00 38.74 1.82
2654 2717 8.212995 ACAGATCCAGATTTTTGGTTCAAATTT 58.787 29.630 6.05 0.00 38.74 1.82
2655 2718 7.738847 ACAGATCCAGATTTTTGGTTCAAATT 58.261 30.769 6.05 0.00 38.74 1.82
2656 2719 7.307131 ACAGATCCAGATTTTTGGTTCAAAT 57.693 32.000 6.05 0.00 38.74 2.32
2657 2720 6.729690 ACAGATCCAGATTTTTGGTTCAAA 57.270 33.333 6.05 0.00 38.74 2.69
2658 2721 6.071952 GCTACAGATCCAGATTTTTGGTTCAA 60.072 38.462 6.05 0.00 38.74 2.69
2659 2722 5.415701 GCTACAGATCCAGATTTTTGGTTCA 59.584 40.000 6.05 0.00 38.74 3.18
2660 2723 5.415701 TGCTACAGATCCAGATTTTTGGTTC 59.584 40.000 0.00 0.00 39.35 3.62
2661 2724 5.324409 TGCTACAGATCCAGATTTTTGGTT 58.676 37.500 0.00 0.00 39.35 3.67
2662 2725 4.922206 TGCTACAGATCCAGATTTTTGGT 58.078 39.130 0.00 0.00 39.35 3.67
2663 2726 5.902613 TTGCTACAGATCCAGATTTTTGG 57.097 39.130 0.00 0.00 39.70 3.28
2664 2727 6.917533 AGTTTGCTACAGATCCAGATTTTTG 58.082 36.000 0.00 0.00 0.00 2.44
2665 2728 7.148171 GCTAGTTTGCTACAGATCCAGATTTTT 60.148 37.037 0.00 0.00 0.00 1.94
2666 2729 6.317391 GCTAGTTTGCTACAGATCCAGATTTT 59.683 38.462 0.00 0.00 0.00 1.82
2667 2730 5.819901 GCTAGTTTGCTACAGATCCAGATTT 59.180 40.000 0.00 0.00 0.00 2.17
2668 2731 5.363939 GCTAGTTTGCTACAGATCCAGATT 58.636 41.667 0.00 0.00 0.00 2.40
2669 2732 4.202305 GGCTAGTTTGCTACAGATCCAGAT 60.202 45.833 0.00 0.00 0.00 2.90
2670 2733 3.133003 GGCTAGTTTGCTACAGATCCAGA 59.867 47.826 0.00 0.00 0.00 3.86
2671 2734 3.118629 TGGCTAGTTTGCTACAGATCCAG 60.119 47.826 0.00 0.00 0.00 3.86
2672 2735 2.837591 TGGCTAGTTTGCTACAGATCCA 59.162 45.455 0.00 0.00 0.00 3.41
2673 2736 3.543680 TGGCTAGTTTGCTACAGATCC 57.456 47.619 0.00 0.00 0.00 3.36
2674 2737 6.931281 TGATATTGGCTAGTTTGCTACAGATC 59.069 38.462 0.00 0.00 0.00 2.75
2675 2738 6.708054 GTGATATTGGCTAGTTTGCTACAGAT 59.292 38.462 0.00 0.00 0.00 2.90
2676 2739 6.049149 GTGATATTGGCTAGTTTGCTACAGA 58.951 40.000 0.00 0.00 0.00 3.41
2677 2740 5.237344 GGTGATATTGGCTAGTTTGCTACAG 59.763 44.000 0.00 0.00 0.00 2.74
2678 2741 5.104527 AGGTGATATTGGCTAGTTTGCTACA 60.105 40.000 0.00 0.00 0.00 2.74
2679 2742 5.368989 AGGTGATATTGGCTAGTTTGCTAC 58.631 41.667 0.00 0.00 0.00 3.58
2680 2743 5.630415 AGGTGATATTGGCTAGTTTGCTA 57.370 39.130 0.00 0.00 0.00 3.49
2681 2744 4.510167 AGGTGATATTGGCTAGTTTGCT 57.490 40.909 0.00 0.00 0.00 3.91
2682 2745 6.884280 ATTAGGTGATATTGGCTAGTTTGC 57.116 37.500 0.00 0.00 0.00 3.68
2734 2797 9.555727 GCATGTTCCCAAATAGTAATCTAGTTA 57.444 33.333 0.00 0.00 33.55 2.24
2735 2798 8.052748 TGCATGTTCCCAAATAGTAATCTAGTT 58.947 33.333 0.00 0.00 35.28 2.24
2736 2799 7.573710 TGCATGTTCCCAAATAGTAATCTAGT 58.426 34.615 0.00 0.00 0.00 2.57
2737 2800 7.716998 ACTGCATGTTCCCAAATAGTAATCTAG 59.283 37.037 0.00 0.00 0.00 2.43
2738 2801 7.573710 ACTGCATGTTCCCAAATAGTAATCTA 58.426 34.615 0.00 0.00 0.00 1.98
2739 2802 6.426587 ACTGCATGTTCCCAAATAGTAATCT 58.573 36.000 0.00 0.00 0.00 2.40
2740 2803 6.699575 ACTGCATGTTCCCAAATAGTAATC 57.300 37.500 0.00 0.00 0.00 1.75
2741 2804 8.766994 AATACTGCATGTTCCCAAATAGTAAT 57.233 30.769 0.00 0.00 0.00 1.89
2742 2805 8.465999 CAAATACTGCATGTTCCCAAATAGTAA 58.534 33.333 0.00 0.00 0.00 2.24
2743 2806 7.995289 CAAATACTGCATGTTCCCAAATAGTA 58.005 34.615 0.00 0.00 0.00 1.82
2744 2807 6.866480 CAAATACTGCATGTTCCCAAATAGT 58.134 36.000 0.00 0.00 0.00 2.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.