AutoCloner

Multiple sequence alignment - TraesCS3A01G088700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3A01G088700	chr3A	100.000	2100	0	0	680	2779	56948096	56950195	0.000000e+00	3879.0
1	TraesCS3A01G088700	chr3A	91.503	1530	83	18	685	2199	57007258	57008755	0.000000e+00	2061.0
2	TraesCS3A01G088700	chr3A	78.140	828	113	36	1911	2703	621120207	621119413	5.420000e-127	464.0
3	TraesCS3A01G088700	chr3A	100.000	224	0	0	1	224	56947417	56947640	5.540000e-112	414.0
4	TraesCS3A01G088700	chr3A	87.448	239	29	1	1198	1435	56776202	56776440	9.810000e-70	274.0
5	TraesCS3A01G088700	chr3A	91.176	204	14	2	1	200	56808379	56808582	9.810000e-70	274.0
6	TraesCS3A01G088700	chr3A	88.261	230	24	3	1195	1423	56850902	56851129	3.530000e-69	272.0
7	TraesCS3A01G088700	chr3A	84.364	275	38	5	1195	1468	56778921	56779191	5.900000e-67	265.0
8	TraesCS3A01G088700	chr3A	94.017	117	7	0	684	800	56808850	56808966	7.910000e-41	178.0
9	TraesCS3A01G088700	chr3A	84.746	59	9	0	2175	2233	682310840	682310898	2.990000e-05	60.2
10	TraesCS3A01G088700	chr3B	90.757	779	53	7	681	1442	70577837	70578613	0.000000e+00	1022.0
11	TraesCS3A01G088700	chr3B	83.333	300	43	6	1195	1493	70470467	70470760	1.270000e-68	270.0
12	TraesCS3A01G088700	chr3B	86.611	239	29	3	1195	1432	70454707	70454943	7.630000e-66	261.0
13	TraesCS3A01G088700	chr3B	85.597	243	31	4	1195	1435	70416347	70416587	4.590000e-63	252.0
14	TraesCS3A01G088700	chr3D	90.260	770	48	9	681	1437	45051760	45052515	0.000000e+00	981.0
15	TraesCS3A01G088700	chr3D	80.215	930	120	37	1888	2777	253069087	253068182	8.390000e-180	640.0
16	TraesCS3A01G088700	chr3D	84.778	519	63	12	2273	2777	116336515	116337031	8.880000e-140	507.0
17	TraesCS3A01G088700	chr3D	84.463	354	38	11	1885	2235	25281741	25281402	1.600000e-87	333.0
18	TraesCS3A01G088700	chr3D	80.172	232	32	8	800	1017	45029022	45029253	7.970000e-36	161.0
19	TraesCS3A01G088700	chr1B	82.277	931	114	22	1885	2777	149599337	149600254	0.000000e+00	758.0
20	TraesCS3A01G088700	chr1D	83.761	819	93	26	1983	2777	354520431	354521233	0.000000e+00	739.0
21	TraesCS3A01G088700	chr1D	90.196	51	4	1	1	50	463444035	463444085	6.420000e-07	65.8
22	TraesCS3A01G088700	chr6B	80.022	926	118	36	1888	2779	624835766	624834874	8.450000e-175	623.0
23	TraesCS3A01G088700	chr6B	79.698	926	121	36	1888	2779	624870206	624869314	8.510000e-170	606.0
24	TraesCS3A01G088700	chr2D	79.976	829	104	34	1983	2777	434140417	434141217	3.130000e-154	555.0
25	TraesCS3A01G088700	chr2D	76.075	372	65	20	1885	2242	496377489	496377128	3.680000e-39	172.0
26	TraesCS3A01G088700	chr2D	82.796	93	11	3	1563	1655	156705103	156705016	8.250000e-11	78.7
27	TraesCS3A01G088700	chr4D	83.969	524	67	11	2270	2779	501967303	501966783	1.160000e-133	486.0
28	TraesCS3A01G088700	chr4D	82.014	556	89	8	2233	2777	134692598	134692043	1.950000e-126	462.0
29	TraesCS3A01G088700	chr4D	86.765	68	9	0	1560	1627	12541311	12541244	2.970000e-10	76.8
30	TraesCS3A01G088700	chr4D	92.000	50	3	1	1	50	127534315	127534267	4.970000e-08	69.4
31	TraesCS3A01G088700	chr6D	86.957	414	51	1	2229	2639	86613839	86613426	1.950000e-126	462.0
32	TraesCS3A01G088700	chr5D	80.944	572	82	18	2227	2777	50633780	50633215	7.110000e-116	427.0
33	TraesCS3A01G088700	chr5D	80.035	566	91	9	2228	2777	555074430	555073871	1.550000e-107	399.0
34	TraesCS3A01G088700	chr4B	78.947	570	78	24	1888	2426	142039127	142039685	1.580000e-92	350.0
35	TraesCS3A01G088700	chr4B	88.000	75	4	2	1579	1653	60056545	60056614	1.770000e-12	84.2
36	TraesCS3A01G088700	chr4B	79.200	125	19	2	1560	1684	22896235	22896118	2.290000e-11	80.5
37	TraesCS3A01G088700	chr7D	83.616	354	40	13	1885	2235	37538822	37539160	1.610000e-82	316.0
38	TraesCS3A01G088700	chr2A	86.441	177	24	0	2273	2449	502349243	502349067	7.850000e-46	195.0
39	TraesCS3A01G088700	chr2A	91.489	47	4	0	2187	2233	515937974	515937928	6.420000e-07	65.8
40	TraesCS3A01G088700	chr2B	92.157	51	3	1	1	50	570663596	570663546	1.380000e-08	71.3
41	TraesCS3A01G088700	chr1A	90.196	51	4	1	1	50	375091199	375091149	6.420000e-07	65.8
42	TraesCS3A01G088700	chr5B	90.244	41	4	0	52	92	301304289	301304249	1.000000e-03	54.7

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3A01G088700	chr3A	56947417	56950195	2778	False	2146.5	3879	100.0000	1	2779	2	chr3A.!!$F6	2778
1	TraesCS3A01G088700	chr3A	57007258	57008755	1497	False	2061.0	2061	91.5030	685	2199	1	chr3A.!!$F2	1514
2	TraesCS3A01G088700	chr3A	621119413	621120207	794	True	464.0	464	78.1400	1911	2703	1	chr3A.!!$R1	792
3	TraesCS3A01G088700	chr3A	56776202	56779191	2989	False	269.5	274	85.9060	1195	1468	2	chr3A.!!$F4	273
4	TraesCS3A01G088700	chr3A	56808379	56808966	587	False	226.0	274	92.5965	1	800	2	chr3A.!!$F5	799
5	TraesCS3A01G088700	chr3B	70577837	70578613	776	False	1022.0	1022	90.7570	681	1442	1	chr3B.!!$F4	761
6	TraesCS3A01G088700	chr3D	45051760	45052515	755	False	981.0	981	90.2600	681	1437	1	chr3D.!!$F2	756
7	TraesCS3A01G088700	chr3D	253068182	253069087	905	True	640.0	640	80.2150	1888	2777	1	chr3D.!!$R2	889
8	TraesCS3A01G088700	chr3D	116336515	116337031	516	False	507.0	507	84.7780	2273	2777	1	chr3D.!!$F3	504
9	TraesCS3A01G088700	chr1B	149599337	149600254	917	False	758.0	758	82.2770	1885	2777	1	chr1B.!!$F1	892
10	TraesCS3A01G088700	chr1D	354520431	354521233	802	False	739.0	739	83.7610	1983	2777	1	chr1D.!!$F1	794
11	TraesCS3A01G088700	chr6B	624834874	624835766	892	True	623.0	623	80.0220	1888	2779	1	chr6B.!!$R1	891
12	TraesCS3A01G088700	chr6B	624869314	624870206	892	True	606.0	606	79.6980	1888	2779	1	chr6B.!!$R2	891
13	TraesCS3A01G088700	chr2D	434140417	434141217	800	False	555.0	555	79.9760	1983	2777	1	chr2D.!!$F1	794
14	TraesCS3A01G088700	chr4D	501966783	501967303	520	True	486.0	486	83.9690	2270	2779	1	chr4D.!!$R4	509
15	TraesCS3A01G088700	chr4D	134692043	134692598	555	True	462.0	462	82.0140	2233	2777	1	chr4D.!!$R3	544
16	TraesCS3A01G088700	chr5D	50633215	50633780	565	True	427.0	427	80.9440	2227	2777	1	chr5D.!!$R1	550
17	TraesCS3A01G088700	chr5D	555073871	555074430	559	True	399.0	399	80.0350	2228	2777	1	chr5D.!!$R2	549
18	TraesCS3A01G088700	chr4B	142039127	142039685	558	False	350.0	350	78.9470	1888	2426	1	chr4B.!!$F2	538

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
147	152	1.053264	AGGGGCATGCAACCAAACAA	61.053	50.0	26.41	0.0	0.0	2.83	F
1114	1123	0.256752	TTCTGTCCATGCATCCCCTG	59.743	55.0	0.00	0.0	0.0	4.45	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1488	3013	1.228003	CACACCCGGCCTTGTAACA	60.228	57.895	0.00	0.0	0.00	2.41	R
2653	4299	0.315251	CTAGATGCCGAGGCGAATGA	59.685	55.000	9.78	0.0	45.51	2.57	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
50	52	8.883954	AATATAGATGCATTGGAGATGTATCG	57.116	34.615	0.00	0.00	43.06	2.92
70	72	2.557317	GAACCTCACCACTCGAACAAA	58.443	47.619	0.00	0.00	0.00	2.83
99	104	5.616270	ACCACAACACATGTCTATGTAACA	58.384	37.500	0.00	0.00	45.53	2.41
134	139	2.042762	ATCTGGGTAGCAGGGGCA	59.957	61.111	0.00	0.00	44.61	5.36
147	152	1.053264	AGGGGCATGCAACCAAACAA	61.053	50.000	26.41	0.00	0.00	2.83
150	155	1.270732	GGGCATGCAACCAAACAATCA	60.271	47.619	21.36	0.00	0.00	2.57
201	206	3.896648	AATGCAGACAACCAAACTACG	57.103	42.857	0.00	0.00	0.00	3.51
202	207	2.319136	TGCAGACAACCAAACTACGT	57.681	45.000	0.00	0.00	0.00	3.57
203	208	3.455990	TGCAGACAACCAAACTACGTA	57.544	42.857	0.00	0.00	0.00	3.57
204	209	3.125316	TGCAGACAACCAAACTACGTAC	58.875	45.455	0.00	0.00	0.00	3.67
205	210	2.154389	GCAGACAACCAAACTACGTACG	59.846	50.000	15.01	15.01	0.00	3.67
206	211	2.727798	CAGACAACCAAACTACGTACGG	59.272	50.000	21.06	5.00	0.00	4.02
209	214	3.123050	ACAACCAAACTACGTACGGAAC	58.877	45.455	21.06	0.00	0.00	3.62
210	215	3.122297	CAACCAAACTACGTACGGAACA	58.878	45.455	21.06	0.53	0.00	3.18
211	216	3.665745	ACCAAACTACGTACGGAACAT	57.334	42.857	21.06	0.00	0.00	2.71
212	217	3.319755	ACCAAACTACGTACGGAACATG	58.680	45.455	21.06	12.23	0.00	3.21
213	218	3.005684	ACCAAACTACGTACGGAACATGA	59.994	43.478	21.06	0.00	0.00	3.07
218	223	6.399204	AACTACGTACGGAACATGATTTTC	57.601	37.500	21.06	0.00	0.00	2.29
219	224	5.717119	ACTACGTACGGAACATGATTTTCT	58.283	37.500	21.06	0.00	0.00	2.52
223	228	4.625742	CGTACGGAACATGATTTTCTGTCT	59.374	41.667	8.91	0.00	40.91	3.41
729	734	7.224949	CAGGTTAGTATAGTTTTTGCTAGGAGC	59.775	40.741	0.00	0.00	42.82	4.70
758	763	4.112634	ACCAAAAGCATCAAACTCCCTA	57.887	40.909	0.00	0.00	0.00	3.53
761	766	5.185828	ACCAAAAGCATCAAACTCCCTATTC	59.814	40.000	0.00	0.00	0.00	1.75
988	997	2.615447	GTCCAGTGCACACCATATCATG	59.385	50.000	21.04	4.73	0.00	3.07
1114	1123	0.256752	TTCTGTCCATGCATCCCCTG	59.743	55.000	0.00	0.00	0.00	4.45
1117	1126	1.212688	CTGTCCATGCATCCCCTGTTA	59.787	52.381	0.00	0.00	0.00	2.41
1132	1141	3.612860	CCCTGTTACGATCTTTGTTCTCG	59.387	47.826	0.00	0.00	38.34	4.04
1133	1142	3.060895	CCTGTTACGATCTTTGTTCTCGC	59.939	47.826	0.00	0.00	35.89	5.03
1135	1144	3.427528	TGTTACGATCTTTGTTCTCGCAC	59.572	43.478	0.00	0.00	35.89	5.34
1136	1145	2.148916	ACGATCTTTGTTCTCGCACA	57.851	45.000	0.00	0.00	35.89	4.57
1138	1147	2.288213	ACGATCTTTGTTCTCGCACAGA	60.288	45.455	0.00	0.00	35.89	3.41
1147	1170	7.489435	TCTTTGTTCTCGCACAGATTTATCTAG	59.511	37.037	0.00	0.00	34.85	2.43
1206	2724	0.613777	GGAGGCGAGGAGAAAAGGAA	59.386	55.000	0.00	0.00	0.00	3.36
1488	3013	7.448469	CGGATCATATTGAAAGAGGGGTTTAAT	59.552	37.037	0.00	0.00	0.00	1.40
1554	3079	9.422196	GTATTGTCTCGATGTAATGTTTTAAGC	57.578	33.333	0.00	0.00	0.00	3.09
1584	3109	8.934507	AAAATAGTCTCTCCGTCTCAAATTAG	57.065	34.615	0.00	0.00	0.00	1.73
1591	3116	5.227908	TCTCCGTCTCAAATTAGTTGTCAC	58.772	41.667	0.00	0.00	38.47	3.67
1593	3118	5.547465	TCCGTCTCAAATTAGTTGTCACAT	58.453	37.500	0.00	0.00	38.47	3.21
1659	3184	8.105197	TCAGCTAGATACATCCATTTATGCAAT	58.895	33.333	0.00	0.00	0.00	3.56
1678	3203	8.647143	ATGCAATAATTAATTCCGAACAAAGG	57.353	30.769	3.39	0.00	0.00	3.11
1679	3204	7.038659	TGCAATAATTAATTCCGAACAAAGGG	58.961	34.615	3.39	0.00	0.00	3.95
1688	3213	4.476628	TCCGAACAAAGGGAATAGTACC	57.523	45.455	0.00	0.00	0.00	3.34
1689	3214	4.098894	TCCGAACAAAGGGAATAGTACCT	58.901	43.478	0.00	0.00	39.21	3.08
1702	3227	8.450434	AGGGAATAGTACCTTTTACCAAAGAAA	58.550	33.333	0.00	0.00	41.97	2.52
1866	3391	3.543680	AGGTTCATACAGGTGAATCCG	57.456	47.619	0.00	0.00	39.50	4.18
1918	3443	3.691342	CGTTCGGCTCCCCAGTGA	61.691	66.667	0.00	0.00	0.00	3.41
1938	3463	3.184541	GACTTAAAATAGCGTCGCCTGA	58.815	45.455	14.86	0.00	0.00	3.86
1960	3487	2.639751	GCAACTAGCGATAAAATGGCG	58.360	47.619	0.00	0.00	39.14	5.69
1968	3495	0.396556	GATAAAATGGCGGTGGGGGT	60.397	55.000	0.00	0.00	0.00	4.95
1980	3508	3.254617	GGGGGTGGTCGGTTTCCT	61.255	66.667	0.00	0.00	0.00	3.36
2085	3615	8.776376	TTTGGAGAAAATTTAGGCATTTCATC	57.224	30.769	0.00	0.00	35.91	2.92
2141	3684	4.754332	ACAAACTAAAAACATCGACGACG	58.246	39.130	0.00	0.00	41.26	5.12
2153	3696	2.677199	TCGACGACGACTACAACTACT	58.323	47.619	5.75	0.00	43.81	2.57
2154	3697	3.833442	TCGACGACGACTACAACTACTA	58.167	45.455	5.75	0.00	43.81	1.82
2155	3698	3.608506	TCGACGACGACTACAACTACTAC	59.391	47.826	5.75	0.00	43.81	2.73
2156	3699	3.610242	CGACGACGACTACAACTACTACT	59.390	47.826	0.00	0.00	42.66	2.57
2157	3700	4.793731	CGACGACGACTACAACTACTACTA	59.206	45.833	0.00	0.00	42.66	1.82
2158	3701	5.275510	CGACGACGACTACAACTACTACTAC	60.276	48.000	0.00	0.00	42.66	2.73
2218	3768	1.546476	CGAGGAGCCTGTAGAAGTTGT	59.454	52.381	0.00	0.00	0.00	3.32
2225	3850	5.291905	AGCCTGTAGAAGTTGTTGTAGTT	57.708	39.130	0.00	0.00	0.00	2.24
2363	3988	3.134127	GCGGGCGGCAATCTCTTT	61.134	61.111	12.47	0.00	42.87	2.52
2523	4163	0.621862	GGGAGGAGAAGGGACACCAT	60.622	60.000	0.00	0.00	40.13	3.55
2667	4313	1.447838	GTCTTCATTCGCCTCGGCA	60.448	57.895	8.87	0.00	42.06	5.69
2670	4316	0.531532	CTTCATTCGCCTCGGCATCT	60.532	55.000	8.87	0.00	42.06	2.90

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
36	38	4.202264	GGTGAGGTTCGATACATCTCCAAT	60.202	45.833	19.18	0.00	45.69	3.16
38	40	2.693591	GGTGAGGTTCGATACATCTCCA	59.306	50.000	19.18	1.05	45.69	3.86
44	46	1.471287	CGAGTGGTGAGGTTCGATACA	59.529	52.381	0.00	0.00	35.19	2.29
46	48	2.118313	TCGAGTGGTGAGGTTCGATA	57.882	50.000	0.00	0.00	37.18	2.92
50	52	2.234300	TTGTTCGAGTGGTGAGGTTC	57.766	50.000	0.00	0.00	0.00	3.62
70	72	4.164843	AGACATGTGTTGTGGTAACCTT	57.835	40.909	1.15	0.00	39.18	3.50
105	110	0.185901	ACCCAGATGCAAAGTGGTGT	59.814	50.000	10.51	6.26	0.00	4.16
108	113	1.098050	GCTACCCAGATGCAAAGTGG	58.902	55.000	0.00	0.00	0.00	4.00
117	122	1.386485	ATGCCCCTGCTACCCAGAT	60.386	57.895	0.00	0.00	44.64	2.90
121	126	3.660422	TTGCATGCCCCTGCTACCC	62.660	63.158	16.68	0.00	42.75	3.69
134	139	2.288948	ACGCATGATTGTTTGGTTGCAT	60.289	40.909	0.00	0.00	0.00	3.96
147	152	6.093909	TGAATGAACAAGAATACACGCATGAT	59.906	34.615	0.00	0.00	0.00	2.45
150	155	5.878332	TGAATGAACAAGAATACACGCAT	57.122	34.783	0.00	0.00	0.00	4.73
711	716	7.338710	ACATCAAGCTCCTAGCAAAAACTATA	58.661	34.615	1.22	0.00	45.56	1.31
758	763	7.542130	GCTTTTGGTCTGTTATTTCGATTGAAT	59.458	33.333	0.00	0.00	33.20	2.57
761	766	6.381801	AGCTTTTGGTCTGTTATTTCGATTG	58.618	36.000	0.00	0.00	0.00	2.67
850	858	1.899534	TACCCCTTGTGCGTTTGGC	60.900	57.895	0.00	0.00	43.96	4.52
899	907	0.243907	GTGACTAAGTCTGCGAGGCA	59.756	55.000	0.00	0.00	36.92	4.75
968	976	2.921821	CATGATATGGTGTGCACTGGA	58.078	47.619	19.41	1.28	0.00	3.86
988	997	0.761802	ACTTATAGGGCAGCCAGAGC	59.238	55.000	15.19	0.00	40.32	4.09
1114	1123	3.427528	TGTGCGAGAACAAAGATCGTAAC	59.572	43.478	0.00	0.00	38.66	2.50
1117	1126	2.061773	CTGTGCGAGAACAAAGATCGT	58.938	47.619	0.00	0.00	38.66	3.73
1132	1141	5.052304	CGTGAACGTCTAGATAAATCTGTGC	60.052	44.000	0.00	0.00	35.05	4.57
1133	1142	6.194876	GTCGTGAACGTCTAGATAAATCTGTG	59.805	42.308	0.00	0.00	40.80	3.66
1135	1144	6.412362	CAGTCGTGAACGTCTAGATAAATCTG	59.588	42.308	0.00	0.00	40.80	2.90
1136	1145	6.315642	TCAGTCGTGAACGTCTAGATAAATCT	59.684	38.462	0.00	0.00	40.80	2.40
1138	1147	6.432607	TCAGTCGTGAACGTCTAGATAAAT	57.567	37.500	0.00	0.00	40.80	1.40
1206	2724	1.674221	GCGGTGCTCATCTTCTGTTCT	60.674	52.381	0.00	0.00	0.00	3.01
1488	3013	1.228003	CACACCCGGCCTTGTAACA	60.228	57.895	0.00	0.00	0.00	2.41
1565	3090	5.471257	ACAACTAATTTGAGACGGAGAGAC	58.529	41.667	0.00	0.00	38.73	3.36
1631	3156	7.388776	TGCATAAATGGATGTATCTAGCTGAAC	59.611	37.037	0.00	0.00	0.00	3.18
1659	3184	9.689501	ACTATTCCCTTTGTTCGGAATTAATTA	57.310	29.630	6.64	0.00	44.75	1.40
1668	3193	4.482952	AGGTACTATTCCCTTTGTTCGG	57.517	45.455	0.00	0.00	36.02	4.30
1691	3216	9.581289	TCTCCACTCAAATATTTTCTTTGGTAA	57.419	29.630	0.00	0.00	34.95	2.85
1866	3391	5.416947	TCTAAGCTAGAAAAACCGTGGATC	58.583	41.667	0.00	0.00	0.00	3.36
1918	3443	3.187700	CTCAGGCGACGCTATTTTAAGT	58.812	45.455	20.77	0.00	0.00	2.24
1938	3463	2.618709	GCCATTTTATCGCTAGTTGCCT	59.381	45.455	0.00	0.00	38.78	4.75
1960	3487	3.855503	GAAACCGACCACCCCCACC	62.856	68.421	0.00	0.00	0.00	4.61
2141	3684	5.051374	CGGTAGCGTAGTAGTAGTTGTAGTC	60.051	48.000	6.07	0.00	0.00	2.59
2147	3690	2.860735	CGACGGTAGCGTAGTAGTAGTT	59.139	50.000	21.38	0.00	0.00	2.24
2152	3695	1.278038	GGCGACGGTAGCGTAGTAG	59.722	63.158	24.68	15.62	35.00	2.57
2153	3696	3.409856	GGCGACGGTAGCGTAGTA	58.590	61.111	24.68	0.00	35.00	1.82
2218	3768	2.357760	GGACGGCGGCAACTACAA	60.358	61.111	17.61	0.00	0.00	2.41
2292	3917	4.831307	GACGACAGCGACGGCGAT	62.831	66.667	18.90	4.23	46.35	4.58
2346	3971	3.134127	AAAGAGATTGCCGCCCGC	61.134	61.111	0.00	0.00	38.31	6.13
2523	4163	1.899437	GCCCTCGTCATCAACCAGGA	61.899	60.000	0.00	0.00	38.46	3.86
2585	4225	1.617018	CGCTCCTCCCCATCAAGTCA	61.617	60.000	0.00	0.00	0.00	3.41
2653	4299	0.315251	CTAGATGCCGAGGCGAATGA	59.685	55.000	9.78	0.00	45.51	2.57
2667	4313	2.851071	GCCGCGACAGCTCCTAGAT	61.851	63.158	8.23	0.00	42.32	1.98

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.