Multiple sequence alignment - TraesCS3A01G087700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G087700 chr3A 100.000 3429 0 0 1 3429 56589729 56593157 0.000000e+00 6333.0
1 TraesCS3A01G087700 chr3A 91.611 453 15 8 1 431 4743234 4743685 3.790000e-169 604.0
2 TraesCS3A01G087700 chr3A 88.596 456 22 12 3 432 10225667 10225216 8.430000e-146 527.0
3 TraesCS3A01G087700 chr3A 88.330 437 37 11 3 431 729664048 729664478 2.360000e-141 512.0
4 TraesCS3A01G087700 chr3A 82.353 153 19 5 1217 1368 511755595 511755450 3.590000e-25 126.0
5 TraesCS3A01G087700 chr3D 91.587 2520 113 42 432 2915 44822132 44824588 0.000000e+00 3387.0
6 TraesCS3A01G087700 chr3D 91.525 531 25 6 2900 3429 44824665 44825176 0.000000e+00 713.0
7 TraesCS3A01G087700 chr3D 81.366 161 22 5 1217 1376 391600436 391600283 1.290000e-24 124.0
8 TraesCS3A01G087700 chr3D 88.636 88 8 2 1591 1677 391599172 391599086 4.680000e-19 106.0
9 TraesCS3A01G087700 chr3B 90.900 1956 77 41 685 2608 69643427 69645313 0.000000e+00 2532.0
10 TraesCS3A01G087700 chr3B 81.988 161 21 5 1217 1376 508710759 508710606 2.780000e-26 130.0
11 TraesCS3A01G087700 chr3B 87.500 88 9 2 1591 1677 508709629 508709543 2.180000e-17 100.0
12 TraesCS3A01G087700 chr3B 79.195 149 23 8 1596 1740 492611977 492611833 2.820000e-16 97.1
13 TraesCS3A01G087700 chr4A 92.661 436 26 3 1 430 625288353 625287918 1.040000e-174 623.0
14 TraesCS3A01G087700 chr6B 92.361 432 30 2 1 431 10552729 10552300 2.260000e-171 612.0
15 TraesCS3A01G087700 chr6B 89.607 433 34 10 1 431 701496963 701496540 1.080000e-149 540.0
16 TraesCS3A01G087700 chr6B 88.889 45 5 0 2237 2281 455415808 455415852 4.780000e-04 56.5
17 TraesCS3A01G087700 chrUn 91.353 451 19 3 1 431 33913997 33913547 1.760000e-167 599.0
18 TraesCS3A01G087700 chrUn 91.131 451 20 3 1 431 33547294 33547744 8.190000e-166 593.0
19 TraesCS3A01G087700 chr1B 90.315 444 24 13 1 431 14602069 14602506 6.420000e-157 564.0
20 TraesCS3A01G087700 chr1B 85.714 126 16 2 2149 2273 582544985 582545109 7.720000e-27 132.0
21 TraesCS3A01G087700 chr1B 79.167 168 25 7 1211 1376 582544001 582544160 1.300000e-19 108.0
22 TraesCS3A01G087700 chr1B 90.244 82 5 2 1595 1676 480656073 480656151 1.680000e-18 104.0
23 TraesCS3A01G087700 chr1B 80.000 135 27 0 2130 2264 480656560 480656694 2.180000e-17 100.0
24 TraesCS3A01G087700 chr1B 86.047 86 12 0 1590 1675 582544561 582544646 3.640000e-15 93.5
25 TraesCS3A01G087700 chr5B 88.235 442 18 5 1 432 527131214 527130797 6.610000e-137 497.0
26 TraesCS3A01G087700 chr7A 91.026 312 25 2 121 432 712655042 712654734 5.290000e-113 418.0
27 TraesCS3A01G087700 chr6A 81.818 440 62 14 3 433 120173125 120172695 1.510000e-93 353.0
28 TraesCS3A01G087700 chr1D 88.095 126 13 2 2149 2273 431427074 431427198 7.670000e-32 148.0
29 TraesCS3A01G087700 chr1D 81.119 143 17 7 1236 1376 431426055 431426189 4.680000e-19 106.0
30 TraesCS3A01G087700 chr1D 80.000 135 27 0 2130 2264 357214901 357215035 2.180000e-17 100.0
31 TraesCS3A01G087700 chr1A 85.714 126 16 2 2149 2273 529665401 529665525 7.720000e-27 132.0
32 TraesCS3A01G087700 chr1A 91.463 82 4 2 1595 1676 458396324 458396402 3.620000e-20 110.0
33 TraesCS3A01G087700 chr1A 81.119 143 21 4 1234 1376 529664365 529664501 3.620000e-20 110.0
34 TraesCS3A01G087700 chr1A 82.677 127 18 4 1590 1714 529664977 529665101 3.620000e-20 110.0
35 TraesCS3A01G087700 chr1A 80.000 135 27 0 2130 2264 458396805 458396939 2.180000e-17 100.0
36 TraesCS3A01G087700 chr6D 80.916 131 20 4 1232 1361 457473195 457473069 7.830000e-17 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G087700 chr3A 56589729 56593157 3428 False 6333 6333 100.000 1 3429 1 chr3A.!!$F2 3428
1 TraesCS3A01G087700 chr3D 44822132 44825176 3044 False 2050 3387 91.556 432 3429 2 chr3D.!!$F1 2997
2 TraesCS3A01G087700 chr3B 69643427 69645313 1886 False 2532 2532 90.900 685 2608 1 chr3B.!!$F1 1923

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
203 204 0.035820 TTAGTCCCGGTTCATGCCAC 60.036 55.0 0.0 0.0 0.0 5.01 F
423 424 0.178932 GGACCTTTGCCCCCTTTTCT 60.179 55.0 0.0 0.0 0.0 2.52 F
1144 1181 0.322322 TTCGACGGTGGGTGCTAATT 59.678 50.0 0.0 0.0 0.0 1.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1955 2001 0.037605 CACCCGCTCCTACTTTTCGT 60.038 55.0 0.0 0.0 0.0 3.85 R
2266 2312 0.179048 TGGCTATGATCCTGTTGGCG 60.179 55.0 0.0 0.0 0.0 5.69 R
2447 2493 0.032017 CCTAGCAGTACCCAGTCCCT 60.032 60.0 0.0 0.0 0.0 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.923733 TGGAGAGGAGAAAGCTTAAGTAG 57.076 43.478 0.00 0.00 0.00 2.57
23 24 5.334421 TGGAGAGGAGAAAGCTTAAGTAGT 58.666 41.667 0.00 0.00 0.00 2.73
24 25 5.186021 TGGAGAGGAGAAAGCTTAAGTAGTG 59.814 44.000 0.00 0.00 0.00 2.74
25 26 5.186215 GGAGAGGAGAAAGCTTAAGTAGTGT 59.814 44.000 0.00 0.00 0.00 3.55
26 27 6.031751 AGAGGAGAAAGCTTAAGTAGTGTG 57.968 41.667 0.00 0.00 0.00 3.82
27 28 5.046950 AGAGGAGAAAGCTTAAGTAGTGTGG 60.047 44.000 0.00 0.00 0.00 4.17
28 29 3.685272 GGAGAAAGCTTAAGTAGTGTGGC 59.315 47.826 0.00 0.00 0.00 5.01
29 30 4.563786 GGAGAAAGCTTAAGTAGTGTGGCT 60.564 45.833 0.00 0.00 0.00 4.75
30 31 4.570930 AGAAAGCTTAAGTAGTGTGGCTC 58.429 43.478 0.00 0.00 0.00 4.70
31 32 2.656560 AGCTTAAGTAGTGTGGCTCG 57.343 50.000 4.02 0.00 0.00 5.03
32 33 1.204941 AGCTTAAGTAGTGTGGCTCGG 59.795 52.381 4.02 0.00 0.00 4.63
33 34 1.739371 GCTTAAGTAGTGTGGCTCGGG 60.739 57.143 4.02 0.00 0.00 5.14
34 35 0.248289 TTAAGTAGTGTGGCTCGGGC 59.752 55.000 0.00 0.00 37.82 6.13
35 36 0.901114 TAAGTAGTGTGGCTCGGGCA 60.901 55.000 10.74 2.21 40.87 5.36
36 37 1.553690 AAGTAGTGTGGCTCGGGCAT 61.554 55.000 10.74 0.00 40.92 4.40
37 38 1.078426 GTAGTGTGGCTCGGGCATT 60.078 57.895 10.74 0.00 40.92 3.56
38 39 1.090052 GTAGTGTGGCTCGGGCATTC 61.090 60.000 10.74 0.00 40.92 2.67
39 40 2.252072 TAGTGTGGCTCGGGCATTCC 62.252 60.000 10.74 0.00 40.92 3.01
40 41 3.645660 TGTGGCTCGGGCATTCCA 61.646 61.111 10.74 0.00 40.92 3.53
41 42 2.124151 GTGGCTCGGGCATTCCAT 60.124 61.111 10.74 0.00 40.92 3.41
42 43 2.189499 GTGGCTCGGGCATTCCATC 61.189 63.158 10.74 0.00 40.92 3.51
43 44 2.974698 GGCTCGGGCATTCCATCG 60.975 66.667 10.74 0.00 40.87 3.84
44 45 2.108976 GCTCGGGCATTCCATCGA 59.891 61.111 0.00 0.00 38.54 3.59
45 46 1.523711 GCTCGGGCATTCCATCGAA 60.524 57.895 0.00 0.00 38.54 3.71
46 47 1.776034 GCTCGGGCATTCCATCGAAC 61.776 60.000 0.00 0.00 38.54 3.95
47 48 0.461870 CTCGGGCATTCCATCGAACA 60.462 55.000 0.00 0.00 34.36 3.18
48 49 0.742990 TCGGGCATTCCATCGAACAC 60.743 55.000 0.00 0.00 34.36 3.32
49 50 1.714899 CGGGCATTCCATCGAACACC 61.715 60.000 0.00 0.00 34.36 4.16
50 51 0.394352 GGGCATTCCATCGAACACCT 60.394 55.000 0.00 0.00 35.00 4.00
51 52 1.463674 GGCATTCCATCGAACACCTT 58.536 50.000 0.00 0.00 0.00 3.50
52 53 1.133025 GGCATTCCATCGAACACCTTG 59.867 52.381 0.00 0.00 0.00 3.61
53 54 1.812571 GCATTCCATCGAACACCTTGT 59.187 47.619 0.00 0.00 0.00 3.16
54 55 2.414559 GCATTCCATCGAACACCTTGTG 60.415 50.000 0.00 0.00 39.75 3.33
56 57 1.877637 TCCATCGAACACCTTGTGTG 58.122 50.000 0.00 0.00 46.79 3.82
57 58 0.238289 CCATCGAACACCTTGTGTGC 59.762 55.000 0.00 0.00 46.79 4.57
58 59 0.943673 CATCGAACACCTTGTGTGCA 59.056 50.000 6.19 0.00 46.79 4.57
59 60 1.536766 CATCGAACACCTTGTGTGCAT 59.463 47.619 6.19 0.00 46.79 3.96
60 61 2.535012 TCGAACACCTTGTGTGCATA 57.465 45.000 6.19 0.00 46.79 3.14
61 62 2.412870 TCGAACACCTTGTGTGCATAG 58.587 47.619 6.19 0.00 46.79 2.23
62 63 2.036604 TCGAACACCTTGTGTGCATAGA 59.963 45.455 6.19 0.00 46.79 1.98
63 64 2.805671 CGAACACCTTGTGTGCATAGAA 59.194 45.455 6.19 0.00 46.79 2.10
64 65 3.120546 CGAACACCTTGTGTGCATAGAAG 60.121 47.826 12.69 12.69 46.79 2.85
65 66 3.149196 AACACCTTGTGTGCATAGAAGG 58.851 45.455 30.19 30.19 46.79 3.46
66 67 3.435026 AACACCTTGTGTGCATAGAAGGT 60.435 43.478 31.38 31.38 46.79 3.50
67 68 2.783135 ACCTTGTGTGCATAGAAGGTG 58.217 47.619 34.55 16.71 45.23 4.00
68 69 2.371841 ACCTTGTGTGCATAGAAGGTGA 59.628 45.455 34.55 0.00 45.23 4.02
69 70 3.005554 CCTTGTGTGCATAGAAGGTGAG 58.994 50.000 25.69 5.75 31.88 3.51
70 71 2.099141 TGTGTGCATAGAAGGTGAGC 57.901 50.000 0.00 0.00 0.00 4.26
71 72 1.625315 TGTGTGCATAGAAGGTGAGCT 59.375 47.619 0.00 0.00 0.00 4.09
72 73 2.831526 TGTGTGCATAGAAGGTGAGCTA 59.168 45.455 0.00 0.00 0.00 3.32
73 74 3.118992 TGTGTGCATAGAAGGTGAGCTAG 60.119 47.826 0.00 0.00 0.00 3.42
74 75 3.131223 GTGTGCATAGAAGGTGAGCTAGA 59.869 47.826 0.00 0.00 0.00 2.43
75 76 3.382865 TGTGCATAGAAGGTGAGCTAGAG 59.617 47.826 0.00 0.00 0.00 2.43
76 77 2.363680 TGCATAGAAGGTGAGCTAGAGC 59.636 50.000 0.00 0.00 42.49 4.09
77 78 2.363680 GCATAGAAGGTGAGCTAGAGCA 59.636 50.000 4.01 0.00 45.16 4.26
78 79 3.798548 GCATAGAAGGTGAGCTAGAGCAC 60.799 52.174 4.01 0.00 45.16 4.40
82 83 4.921834 GTGAGCTAGAGCACCACC 57.078 61.111 13.04 0.88 45.16 4.61
83 84 1.975327 GTGAGCTAGAGCACCACCA 59.025 57.895 13.04 0.00 45.16 4.17
84 85 0.321671 GTGAGCTAGAGCACCACCAA 59.678 55.000 13.04 0.00 45.16 3.67
85 86 0.610174 TGAGCTAGAGCACCACCAAG 59.390 55.000 4.01 0.00 45.16 3.61
86 87 0.742635 GAGCTAGAGCACCACCAAGC 60.743 60.000 4.01 0.00 45.16 4.01
87 88 1.746991 GCTAGAGCACCACCAAGCC 60.747 63.158 0.00 0.00 41.59 4.35
88 89 1.078143 CTAGAGCACCACCAAGCCC 60.078 63.158 0.00 0.00 0.00 5.19
89 90 1.538876 TAGAGCACCACCAAGCCCT 60.539 57.895 0.00 0.00 0.00 5.19
90 91 1.553690 TAGAGCACCACCAAGCCCTC 61.554 60.000 0.00 0.00 0.00 4.30
91 92 2.856000 AGCACCACCAAGCCCTCT 60.856 61.111 0.00 0.00 0.00 3.69
92 93 2.360475 GCACCACCAAGCCCTCTC 60.360 66.667 0.00 0.00 0.00 3.20
93 94 2.352805 CACCACCAAGCCCTCTCC 59.647 66.667 0.00 0.00 0.00 3.71
94 95 2.936032 ACCACCAAGCCCTCTCCC 60.936 66.667 0.00 0.00 0.00 4.30
95 96 3.732849 CCACCAAGCCCTCTCCCC 61.733 72.222 0.00 0.00 0.00 4.81
96 97 3.732849 CACCAAGCCCTCTCCCCC 61.733 72.222 0.00 0.00 0.00 5.40
97 98 3.960313 ACCAAGCCCTCTCCCCCT 61.960 66.667 0.00 0.00 0.00 4.79
98 99 3.093172 CCAAGCCCTCTCCCCCTC 61.093 72.222 0.00 0.00 0.00 4.30
99 100 3.474570 CAAGCCCTCTCCCCCTCG 61.475 72.222 0.00 0.00 0.00 4.63
100 101 4.806339 AAGCCCTCTCCCCCTCGG 62.806 72.222 0.00 0.00 0.00 4.63
105 106 4.465446 CTCTCCCCCTCGGCCAGA 62.465 72.222 2.24 0.00 0.00 3.86
106 107 3.984186 CTCTCCCCCTCGGCCAGAA 62.984 68.421 2.24 0.00 0.00 3.02
107 108 3.009115 CTCCCCCTCGGCCAGAAA 61.009 66.667 2.24 0.00 0.00 2.52
108 109 2.530661 TCCCCCTCGGCCAGAAAA 60.531 61.111 2.24 0.00 0.00 2.29
109 110 2.137177 CTCCCCCTCGGCCAGAAAAA 62.137 60.000 2.24 0.00 0.00 1.94
135 136 1.344458 CAGTGTGCTCTGCTCTTACG 58.656 55.000 0.00 0.00 0.00 3.18
136 137 0.389166 AGTGTGCTCTGCTCTTACGC 60.389 55.000 0.00 0.00 0.00 4.42
137 138 1.444383 TGTGCTCTGCTCTTACGCG 60.444 57.895 3.53 3.53 0.00 6.01
138 139 1.154016 GTGCTCTGCTCTTACGCGA 60.154 57.895 15.93 0.00 0.00 5.87
139 140 1.136872 GTGCTCTGCTCTTACGCGAG 61.137 60.000 15.93 0.00 35.32 5.03
140 141 1.587613 GCTCTGCTCTTACGCGAGG 60.588 63.158 15.93 1.72 33.93 4.63
141 142 1.064946 CTCTGCTCTTACGCGAGGG 59.935 63.158 15.93 0.22 31.59 4.30
142 143 2.105128 CTGCTCTTACGCGAGGGG 59.895 66.667 15.93 2.78 0.00 4.79
143 144 3.432051 CTGCTCTTACGCGAGGGGG 62.432 68.421 15.93 2.36 0.00 5.40
144 145 3.459063 GCTCTTACGCGAGGGGGT 61.459 66.667 15.93 0.00 42.60 4.95
145 146 2.123428 GCTCTTACGCGAGGGGGTA 61.123 63.158 15.93 0.00 40.23 3.69
146 147 1.461911 GCTCTTACGCGAGGGGGTAT 61.462 60.000 15.93 0.00 40.71 2.73
147 148 1.901591 CTCTTACGCGAGGGGGTATA 58.098 55.000 15.93 0.00 40.71 1.47
148 149 2.444421 CTCTTACGCGAGGGGGTATAT 58.556 52.381 15.93 0.00 40.71 0.86
149 150 3.614092 CTCTTACGCGAGGGGGTATATA 58.386 50.000 15.93 0.00 40.71 0.86
150 151 4.205587 CTCTTACGCGAGGGGGTATATAT 58.794 47.826 15.93 0.00 40.71 0.86
151 152 5.371526 CTCTTACGCGAGGGGGTATATATA 58.628 45.833 15.93 0.00 40.71 0.86
152 153 5.371526 TCTTACGCGAGGGGGTATATATAG 58.628 45.833 15.93 0.00 40.71 1.31
153 154 2.941480 ACGCGAGGGGGTATATATAGG 58.059 52.381 15.93 0.00 37.59 2.57
154 155 1.612463 CGCGAGGGGGTATATATAGGC 59.388 57.143 0.00 0.00 0.00 3.93
155 156 2.674420 GCGAGGGGGTATATATAGGCA 58.326 52.381 0.00 0.00 0.00 4.75
156 157 2.364647 GCGAGGGGGTATATATAGGCAC 59.635 54.545 0.00 0.00 0.00 5.01
157 158 2.963782 CGAGGGGGTATATATAGGCACC 59.036 54.545 0.00 0.00 0.00 5.01
158 159 3.373877 CGAGGGGGTATATATAGGCACCT 60.374 52.174 7.34 0.00 0.00 4.00
159 160 4.224762 GAGGGGGTATATATAGGCACCTC 58.775 52.174 12.98 12.98 35.70 3.85
160 161 3.605707 AGGGGGTATATATAGGCACCTCA 59.394 47.826 11.15 0.00 32.83 3.86
161 162 4.237774 AGGGGGTATATATAGGCACCTCAT 59.762 45.833 11.15 3.62 32.83 2.90
162 163 4.975794 GGGGGTATATATAGGCACCTCATT 59.024 45.833 11.15 0.00 32.83 2.57
163 164 5.163195 GGGGGTATATATAGGCACCTCATTG 60.163 48.000 11.15 0.00 32.83 2.82
164 165 5.163195 GGGGTATATATAGGCACCTCATTGG 60.163 48.000 0.00 0.00 42.93 3.16
174 175 3.100545 CCTCATTGGTCCCGATTGG 57.899 57.895 0.00 0.00 0.00 3.16
175 176 0.255890 CCTCATTGGTCCCGATTGGT 59.744 55.000 0.00 0.00 34.77 3.67
176 177 1.382522 CTCATTGGTCCCGATTGGTG 58.617 55.000 0.00 0.00 34.77 4.17
177 178 0.988063 TCATTGGTCCCGATTGGTGA 59.012 50.000 0.00 0.00 34.77 4.02
178 179 1.094785 CATTGGTCCCGATTGGTGAC 58.905 55.000 10.63 10.63 35.74 3.67
179 180 0.695924 ATTGGTCCCGATTGGTGACA 59.304 50.000 17.53 3.57 37.25 3.58
180 181 0.036164 TTGGTCCCGATTGGTGACAG 59.964 55.000 17.53 0.00 44.54 3.51
181 182 1.745489 GGTCCCGATTGGTGACAGC 60.745 63.158 17.53 0.00 44.54 4.40
182 183 1.745489 GTCCCGATTGGTGACAGCC 60.745 63.158 13.11 0.00 44.54 4.85
183 184 1.918293 TCCCGATTGGTGACAGCCT 60.918 57.895 1.47 0.00 44.54 4.58
184 185 1.002134 CCCGATTGGTGACAGCCTT 60.002 57.895 1.47 0.00 44.54 4.35
185 186 0.609131 CCCGATTGGTGACAGCCTTT 60.609 55.000 1.47 0.00 44.54 3.11
186 187 1.339631 CCCGATTGGTGACAGCCTTTA 60.340 52.381 1.47 0.00 44.54 1.85
187 188 2.009774 CCGATTGGTGACAGCCTTTAG 58.990 52.381 1.47 0.00 44.54 1.85
188 189 2.615493 CCGATTGGTGACAGCCTTTAGT 60.615 50.000 1.47 0.00 44.54 2.24
189 190 2.673368 CGATTGGTGACAGCCTTTAGTC 59.327 50.000 1.47 0.00 44.54 2.59
190 191 2.561478 TTGGTGACAGCCTTTAGTCC 57.439 50.000 1.47 0.00 44.54 3.85
191 192 0.690762 TGGTGACAGCCTTTAGTCCC 59.309 55.000 1.47 0.00 33.89 4.46
192 193 0.391263 GGTGACAGCCTTTAGTCCCG 60.391 60.000 0.00 0.00 33.89 5.14
193 194 0.391263 GTGACAGCCTTTAGTCCCGG 60.391 60.000 0.00 0.00 33.89 5.73
194 195 0.834687 TGACAGCCTTTAGTCCCGGT 60.835 55.000 0.00 0.00 33.89 5.28
195 196 0.323957 GACAGCCTTTAGTCCCGGTT 59.676 55.000 0.00 0.00 0.00 4.44
196 197 0.323957 ACAGCCTTTAGTCCCGGTTC 59.676 55.000 0.00 0.00 0.00 3.62
197 198 0.323629 CAGCCTTTAGTCCCGGTTCA 59.676 55.000 0.00 0.00 0.00 3.18
198 199 1.065418 CAGCCTTTAGTCCCGGTTCAT 60.065 52.381 0.00 0.00 0.00 2.57
199 200 1.065418 AGCCTTTAGTCCCGGTTCATG 60.065 52.381 0.00 0.00 0.00 3.07
200 201 1.379527 CCTTTAGTCCCGGTTCATGC 58.620 55.000 0.00 0.00 0.00 4.06
201 202 1.379527 CTTTAGTCCCGGTTCATGCC 58.620 55.000 0.00 0.00 0.00 4.40
202 203 0.693622 TTTAGTCCCGGTTCATGCCA 59.306 50.000 0.00 0.00 0.00 4.92
203 204 0.035820 TTAGTCCCGGTTCATGCCAC 60.036 55.000 0.00 0.00 0.00 5.01
204 205 1.906105 TAGTCCCGGTTCATGCCACC 61.906 60.000 0.00 4.21 0.00 4.61
205 206 3.253061 TCCCGGTTCATGCCACCA 61.253 61.111 12.84 0.00 33.36 4.17
206 207 2.282816 CCCGGTTCATGCCACCAA 60.283 61.111 12.84 0.00 33.36 3.67
207 208 2.635443 CCCGGTTCATGCCACCAAC 61.635 63.158 12.84 0.99 33.36 3.77
208 209 2.635443 CCGGTTCATGCCACCAACC 61.635 63.158 12.84 8.51 36.91 3.77
209 210 1.603455 CGGTTCATGCCACCAACCT 60.603 57.895 12.84 0.00 37.95 3.50
210 211 1.865788 CGGTTCATGCCACCAACCTG 61.866 60.000 12.84 3.73 37.95 4.00
211 212 1.535204 GGTTCATGCCACCAACCTGG 61.535 60.000 8.62 0.00 45.02 4.45
212 213 0.539438 GTTCATGCCACCAACCTGGA 60.539 55.000 0.00 0.00 40.96 3.86
213 214 0.539438 TTCATGCCACCAACCTGGAC 60.539 55.000 0.00 0.00 40.96 4.02
214 215 1.978617 CATGCCACCAACCTGGACC 60.979 63.158 0.00 0.00 40.96 4.46
215 216 2.468868 ATGCCACCAACCTGGACCA 61.469 57.895 0.00 0.00 40.96 4.02
216 217 2.017668 ATGCCACCAACCTGGACCAA 62.018 55.000 0.00 0.00 40.96 3.67
217 218 1.228862 GCCACCAACCTGGACCAAT 60.229 57.895 0.00 0.00 40.96 3.16
218 219 1.535204 GCCACCAACCTGGACCAATG 61.535 60.000 0.00 0.00 40.96 2.82
219 220 0.899717 CCACCAACCTGGACCAATGG 60.900 60.000 15.69 15.69 40.96 3.16
220 221 0.178964 CACCAACCTGGACCAATGGT 60.179 55.000 16.75 16.75 44.95 3.55
221 222 0.178964 ACCAACCTGGACCAATGGTG 60.179 55.000 20.12 12.12 42.57 4.17
222 223 3.570730 ACCAACCTGGACCAATGGTGG 62.571 57.143 21.09 21.09 45.59 4.61
244 245 3.801997 CCAGGAGCGAGGCCCATT 61.802 66.667 0.00 0.00 0.00 3.16
245 246 2.515523 CAGGAGCGAGGCCCATTG 60.516 66.667 0.00 0.00 0.00 2.82
246 247 3.801997 AGGAGCGAGGCCCATTGG 61.802 66.667 0.00 0.00 0.00 3.16
247 248 4.115199 GGAGCGAGGCCCATTGGT 62.115 66.667 0.00 0.00 0.00 3.67
248 249 2.514824 GAGCGAGGCCCATTGGTC 60.515 66.667 0.00 0.00 36.05 4.02
249 250 4.115199 AGCGAGGCCCATTGGTCC 62.115 66.667 0.00 0.00 36.69 4.46
251 252 4.856801 CGAGGCCCATTGGTCCCG 62.857 72.222 0.00 0.00 36.69 5.14
252 253 4.506255 GAGGCCCATTGGTCCCGG 62.506 72.222 0.00 0.00 36.69 5.73
254 255 4.376170 GGCCCATTGGTCCCGGTT 62.376 66.667 0.00 0.00 0.00 4.44
255 256 2.754254 GCCCATTGGTCCCGGTTC 60.754 66.667 0.00 0.00 0.00 3.62
256 257 2.437716 CCCATTGGTCCCGGTTCG 60.438 66.667 0.00 0.00 0.00 3.95
257 258 2.349755 CCATTGGTCCCGGTTCGT 59.650 61.111 0.00 0.00 0.00 3.85
258 259 1.743995 CCATTGGTCCCGGTTCGTC 60.744 63.158 0.00 0.00 0.00 4.20
259 260 1.743995 CATTGGTCCCGGTTCGTCC 60.744 63.158 0.00 0.00 0.00 4.79
260 261 2.963101 ATTGGTCCCGGTTCGTCCC 61.963 63.158 0.00 0.00 0.00 4.46
261 262 4.938074 TGGTCCCGGTTCGTCCCA 62.938 66.667 0.00 0.00 0.00 4.37
262 263 4.383861 GGTCCCGGTTCGTCCCAC 62.384 72.222 0.00 0.00 0.00 4.61
263 264 4.383861 GTCCCGGTTCGTCCCACC 62.384 72.222 0.00 0.00 0.00 4.61
264 265 4.938074 TCCCGGTTCGTCCCACCA 62.938 66.667 0.00 0.00 33.36 4.17
265 266 3.943691 CCCGGTTCGTCCCACCAA 61.944 66.667 0.00 0.00 33.36 3.67
266 267 2.667199 CCGGTTCGTCCCACCAAC 60.667 66.667 0.00 0.00 33.36 3.77
267 268 2.667199 CGGTTCGTCCCACCAACC 60.667 66.667 0.00 0.00 36.91 3.77
268 269 2.667199 GGTTCGTCCCACCAACCG 60.667 66.667 0.00 0.00 34.04 4.44
269 270 2.667199 GTTCGTCCCACCAACCGG 60.667 66.667 0.00 0.00 38.77 5.28
270 271 3.943691 TTCGTCCCACCAACCGGG 61.944 66.667 6.32 0.00 46.03 5.73
276 277 2.196229 CCACCAACCGGGACCAAA 59.804 61.111 6.32 0.00 41.15 3.28
277 278 1.455959 CCACCAACCGGGACCAAAA 60.456 57.895 6.32 0.00 41.15 2.44
278 279 1.460273 CCACCAACCGGGACCAAAAG 61.460 60.000 6.32 0.00 41.15 2.27
279 280 1.152631 ACCAACCGGGACCAAAAGG 60.153 57.895 6.32 0.00 41.15 3.11
280 281 1.152631 CCAACCGGGACCAAAAGGT 60.153 57.895 6.32 0.00 40.01 3.50
281 282 1.176619 CCAACCGGGACCAAAAGGTC 61.177 60.000 6.32 6.11 40.01 3.85
289 290 2.249844 GACCAAAAGGTCCAGACGAA 57.750 50.000 3.27 0.00 33.21 3.85
290 291 1.871676 GACCAAAAGGTCCAGACGAAC 59.128 52.381 3.27 0.00 33.21 3.95
291 292 1.235724 CCAAAAGGTCCAGACGAACC 58.764 55.000 0.00 0.00 35.69 3.62
292 293 0.865769 CAAAAGGTCCAGACGAACCG 59.134 55.000 0.00 0.00 40.63 4.44
293 294 0.250166 AAAAGGTCCAGACGAACCGG 60.250 55.000 0.00 0.00 40.63 5.28
294 295 2.108278 AAAGGTCCAGACGAACCGGG 62.108 60.000 6.32 0.00 40.63 5.73
295 296 2.993264 GGTCCAGACGAACCGGGA 60.993 66.667 6.32 0.00 0.00 5.14
296 297 2.260743 GTCCAGACGAACCGGGAC 59.739 66.667 6.32 9.54 42.60 4.46
297 298 2.993264 TCCAGACGAACCGGGACC 60.993 66.667 6.32 0.00 0.00 4.46
298 299 3.307906 CCAGACGAACCGGGACCA 61.308 66.667 6.32 0.00 0.00 4.02
299 300 2.738480 CAGACGAACCGGGACCAA 59.262 61.111 6.32 0.00 0.00 3.67
300 301 1.295423 CAGACGAACCGGGACCAAT 59.705 57.895 6.32 0.00 0.00 3.16
301 302 1.019278 CAGACGAACCGGGACCAATG 61.019 60.000 6.32 0.00 0.00 2.82
302 303 1.743995 GACGAACCGGGACCAATGG 60.744 63.158 6.32 0.00 0.00 3.16
303 304 3.131478 CGAACCGGGACCAATGGC 61.131 66.667 6.32 0.00 0.00 4.40
304 305 2.754254 GAACCGGGACCAATGGCC 60.754 66.667 6.32 0.00 0.00 5.36
305 306 4.376170 AACCGGGACCAATGGCCC 62.376 66.667 18.15 18.15 36.26 5.80
307 308 4.141876 CCGGGACCAATGGCCCAT 62.142 66.667 24.54 0.00 38.41 4.00
308 309 2.834505 CGGGACCAATGGCCCATG 60.835 66.667 24.54 10.86 38.41 3.66
309 310 2.364160 GGGACCAATGGCCCATGT 59.636 61.111 21.67 0.00 38.39 3.21
310 311 2.059786 GGGACCAATGGCCCATGTG 61.060 63.158 21.67 0.00 38.39 3.21
311 312 2.059786 GGACCAATGGCCCATGTGG 61.060 63.158 17.98 17.98 37.17 4.17
338 339 2.266055 CCCTCTGGGCTCACGAAC 59.734 66.667 0.00 0.00 35.35 3.95
339 340 2.266055 CCTCTGGGCTCACGAACC 59.734 66.667 0.00 0.00 0.00 3.62
340 341 2.125912 CTCTGGGCTCACGAACCG 60.126 66.667 0.00 0.00 0.00 4.44
341 342 3.649277 CTCTGGGCTCACGAACCGG 62.649 68.421 0.00 0.00 0.00 5.28
342 343 4.760047 CTGGGCTCACGAACCGGG 62.760 72.222 6.32 0.00 0.00 5.73
344 345 4.754667 GGGCTCACGAACCGGGTC 62.755 72.222 10.31 10.31 0.00 4.46
345 346 4.754667 GGCTCACGAACCGGGTCC 62.755 72.222 15.47 0.00 0.00 4.46
346 347 3.998672 GCTCACGAACCGGGTCCA 61.999 66.667 15.47 0.00 0.00 4.02
347 348 2.738480 CTCACGAACCGGGTCCAA 59.262 61.111 15.47 0.00 0.00 3.53
348 349 1.295423 CTCACGAACCGGGTCCAAT 59.705 57.895 15.47 0.00 0.00 3.16
349 350 1.004320 TCACGAACCGGGTCCAATG 60.004 57.895 15.47 10.37 0.00 2.82
350 351 2.359478 ACGAACCGGGTCCAATGC 60.359 61.111 15.47 0.00 0.00 3.56
351 352 3.131478 CGAACCGGGTCCAATGCC 61.131 66.667 15.47 0.00 0.00 4.40
352 353 2.754254 GAACCGGGTCCAATGCCC 60.754 66.667 8.85 0.00 42.68 5.36
353 354 4.376170 AACCGGGTCCAATGCCCC 62.376 66.667 6.32 0.00 43.18 5.80
356 357 4.141876 CGGGTCCAATGCCCCCAT 62.142 66.667 6.32 0.00 43.18 4.00
357 358 2.368188 GGGTCCAATGCCCCCATT 59.632 61.111 1.18 0.00 42.26 3.16
363 364 2.368188 AATGCCCCCATTGGTCCC 59.632 61.111 1.20 0.00 40.09 4.46
364 365 3.677480 AATGCCCCCATTGGTCCCG 62.677 63.158 1.20 0.00 40.09 5.14
367 368 3.668142 CCCCCATTGGTCCCGGTT 61.668 66.667 0.00 0.00 0.00 4.44
368 369 2.044352 CCCCATTGGTCCCGGTTC 60.044 66.667 0.00 0.00 0.00 3.62
369 370 2.612493 CCCCATTGGTCCCGGTTCT 61.612 63.158 0.00 0.00 0.00 3.01
370 371 1.276140 CCCCATTGGTCCCGGTTCTA 61.276 60.000 0.00 0.00 0.00 2.10
371 372 0.180406 CCCATTGGTCCCGGTTCTAG 59.820 60.000 0.00 0.00 0.00 2.43
372 373 1.200519 CCATTGGTCCCGGTTCTAGA 58.799 55.000 0.00 0.00 0.00 2.43
373 374 1.134491 CCATTGGTCCCGGTTCTAGAC 60.134 57.143 0.00 0.00 0.00 2.59
374 375 1.831736 CATTGGTCCCGGTTCTAGACT 59.168 52.381 0.00 0.00 0.00 3.24
375 376 1.263356 TTGGTCCCGGTTCTAGACTG 58.737 55.000 0.00 0.00 0.00 3.51
376 377 0.406750 TGGTCCCGGTTCTAGACTGA 59.593 55.000 0.00 0.00 36.72 3.41
377 378 1.203087 TGGTCCCGGTTCTAGACTGAA 60.203 52.381 0.00 0.00 36.72 3.02
378 379 1.204231 GGTCCCGGTTCTAGACTGAAC 59.796 57.143 0.00 8.44 43.88 3.18
379 380 2.169330 GTCCCGGTTCTAGACTGAACT 58.831 52.381 0.00 0.00 44.02 3.01
380 381 2.094649 GTCCCGGTTCTAGACTGAACTG 60.095 54.545 0.00 14.66 46.97 3.16
382 383 2.656560 CGGTTCTAGACTGAACTGGG 57.343 55.000 14.15 5.13 44.94 4.45
383 384 2.168496 CGGTTCTAGACTGAACTGGGA 58.832 52.381 14.15 0.00 44.94 4.37
384 385 2.094649 CGGTTCTAGACTGAACTGGGAC 60.095 54.545 14.15 0.00 44.94 4.46
385 386 3.166679 GGTTCTAGACTGAACTGGGACT 58.833 50.000 13.76 0.00 44.02 3.85
386 387 4.342359 GGTTCTAGACTGAACTGGGACTA 58.658 47.826 13.76 0.00 44.02 2.59
387 388 4.771054 GGTTCTAGACTGAACTGGGACTAA 59.229 45.833 13.76 0.00 44.02 2.24
388 389 5.422650 GGTTCTAGACTGAACTGGGACTAAT 59.577 44.000 13.76 0.00 44.02 1.73
389 390 6.334202 GTTCTAGACTGAACTGGGACTAATG 58.666 44.000 0.00 0.00 42.03 1.90
390 391 4.956700 TCTAGACTGAACTGGGACTAATGG 59.043 45.833 0.00 0.00 0.00 3.16
391 392 2.840651 AGACTGAACTGGGACTAATGGG 59.159 50.000 0.00 0.00 0.00 4.00
392 393 1.282157 ACTGAACTGGGACTAATGGGC 59.718 52.381 0.00 0.00 0.00 5.36
393 394 1.561542 CTGAACTGGGACTAATGGGCT 59.438 52.381 0.00 0.00 0.00 5.19
394 395 1.281867 TGAACTGGGACTAATGGGCTG 59.718 52.381 0.00 0.00 0.00 4.85
395 396 1.559682 GAACTGGGACTAATGGGCTGA 59.440 52.381 0.00 0.00 0.00 4.26
396 397 0.912486 ACTGGGACTAATGGGCTGAC 59.088 55.000 0.00 0.00 0.00 3.51
397 398 0.181350 CTGGGACTAATGGGCTGACC 59.819 60.000 0.00 0.00 40.81 4.02
410 411 4.974438 TGACCCGGCCTGGACCTT 62.974 66.667 21.63 0.00 42.00 3.50
411 412 3.647771 GACCCGGCCTGGACCTTT 61.648 66.667 21.63 0.00 42.00 3.11
412 413 3.920093 GACCCGGCCTGGACCTTTG 62.920 68.421 21.63 2.26 42.00 2.77
418 419 3.268032 CCTGGACCTTTGCCCCCT 61.268 66.667 0.00 0.00 0.00 4.79
419 420 2.854076 CTGGACCTTTGCCCCCTT 59.146 61.111 0.00 0.00 0.00 3.95
420 421 1.156095 CTGGACCTTTGCCCCCTTT 59.844 57.895 0.00 0.00 0.00 3.11
421 422 0.471780 CTGGACCTTTGCCCCCTTTT 60.472 55.000 0.00 0.00 0.00 2.27
422 423 0.471022 TGGACCTTTGCCCCCTTTTC 60.471 55.000 0.00 0.00 0.00 2.29
423 424 0.178932 GGACCTTTGCCCCCTTTTCT 60.179 55.000 0.00 0.00 0.00 2.52
424 425 1.076513 GGACCTTTGCCCCCTTTTCTA 59.923 52.381 0.00 0.00 0.00 2.10
425 426 2.168496 GACCTTTGCCCCCTTTTCTAC 58.832 52.381 0.00 0.00 0.00 2.59
426 427 1.787058 ACCTTTGCCCCCTTTTCTACT 59.213 47.619 0.00 0.00 0.00 2.57
427 428 2.990998 ACCTTTGCCCCCTTTTCTACTA 59.009 45.455 0.00 0.00 0.00 1.82
428 429 3.010250 ACCTTTGCCCCCTTTTCTACTAG 59.990 47.826 0.00 0.00 0.00 2.57
429 430 3.010250 CCTTTGCCCCCTTTTCTACTAGT 59.990 47.826 0.00 0.00 0.00 2.57
430 431 3.713826 TTGCCCCCTTTTCTACTAGTG 57.286 47.619 5.39 0.00 0.00 2.74
437 438 3.369576 CCCTTTTCTACTAGTGTGCCCTC 60.370 52.174 5.39 0.00 0.00 4.30
460 461 4.717629 CAACCTCTGCCGACGCGA 62.718 66.667 15.93 0.00 38.08 5.87
484 485 1.472878 CCGTCTAGAGCTACTGCAACA 59.527 52.381 0.00 0.00 42.74 3.33
493 494 0.729116 CTACTGCAACAATCCAGCCG 59.271 55.000 0.00 0.00 32.37 5.52
495 496 2.596923 TGCAACAATCCAGCCGCA 60.597 55.556 0.00 0.00 0.00 5.69
496 497 2.180017 GCAACAATCCAGCCGCAG 59.820 61.111 0.00 0.00 0.00 5.18
498 499 2.282391 AACAATCCAGCCGCAGCA 60.282 55.556 0.00 0.00 43.56 4.41
524 525 3.626670 CCTGAAGTGCAAGAAGATGATCC 59.373 47.826 0.00 0.00 0.00 3.36
526 527 2.322355 AGTGCAAGAAGATGATCCCG 57.678 50.000 0.00 0.00 0.00 5.14
529 535 1.554617 TGCAAGAAGATGATCCCGACA 59.445 47.619 0.00 0.00 0.00 4.35
546 552 0.537188 ACACCGCCATCCTAAGACAG 59.463 55.000 0.00 0.00 0.00 3.51
548 554 1.414181 CACCGCCATCCTAAGACAGAT 59.586 52.381 0.00 0.00 0.00 2.90
555 561 4.464947 CCATCCTAAGACAGATTTTCCCC 58.535 47.826 0.00 0.00 0.00 4.81
556 562 3.906720 TCCTAAGACAGATTTTCCCCG 57.093 47.619 0.00 0.00 0.00 5.73
607 613 2.122189 GAGGGGAGGAGATGGGGG 60.122 72.222 0.00 0.00 0.00 5.40
636 642 2.868566 ATTTCACCCCTGCCCCCA 60.869 61.111 0.00 0.00 0.00 4.96
637 643 3.238197 ATTTCACCCCTGCCCCCAC 62.238 63.158 0.00 0.00 0.00 4.61
714 720 8.548025 TGAGAAAGAAAAGAAAAAGGGGAAAAT 58.452 29.630 0.00 0.00 0.00 1.82
720 726 9.627123 AGAAAAGAAAAAGGGGAAAATAAAAGG 57.373 29.630 0.00 0.00 0.00 3.11
725 731 9.403583 AGAAAAAGGGGAAAATAAAAGGAAAAC 57.596 29.630 0.00 0.00 0.00 2.43
739 745 6.510879 AAAGGAAAACCTCATTAACGATCC 57.489 37.500 0.00 0.00 0.00 3.36
740 746 5.437191 AGGAAAACCTCATTAACGATCCT 57.563 39.130 0.00 0.00 0.00 3.24
742 748 6.583562 AGGAAAACCTCATTAACGATCCTAG 58.416 40.000 0.00 0.00 33.19 3.02
935 957 2.033793 CTAGCTCTTGGCCGATCGA 58.966 57.895 18.66 0.00 43.05 3.59
975 1003 1.134818 TCGATCCAACGGTTGATCCAG 60.135 52.381 21.88 9.17 35.57 3.86
1040 1076 3.086282 AGTGAATGCATGCATGAGTTGA 58.914 40.909 32.79 14.34 36.68 3.18
1047 1083 2.229543 GCATGCATGAGTTGAAGTGGAA 59.770 45.455 30.64 0.00 0.00 3.53
1054 1090 1.993370 GAGTTGAAGTGGAACGATCGG 59.007 52.381 20.98 1.23 45.86 4.18
1136 1173 0.601558 TCTTCTTCTTCGACGGTGGG 59.398 55.000 0.00 0.00 0.00 4.61
1142 1179 1.180456 TCTTCGACGGTGGGTGCTAA 61.180 55.000 0.00 0.00 0.00 3.09
1144 1181 0.322322 TTCGACGGTGGGTGCTAATT 59.678 50.000 0.00 0.00 0.00 1.40
1145 1182 0.390603 TCGACGGTGGGTGCTAATTG 60.391 55.000 0.00 0.00 0.00 2.32
1147 1184 0.802494 GACGGTGGGTGCTAATTGTG 59.198 55.000 0.00 0.00 0.00 3.33
1148 1185 0.608035 ACGGTGGGTGCTAATTGTGG 60.608 55.000 0.00 0.00 0.00 4.17
1149 1186 1.890174 GGTGGGTGCTAATTGTGGC 59.110 57.895 0.00 0.00 0.00 5.01
1152 1189 2.489751 GGTGCTAATTGTGGCGGC 59.510 61.111 0.00 0.00 32.95 6.53
1202 1242 4.830765 TACATGTCCAGGCGGCGC 62.831 66.667 26.17 26.17 0.00 6.53
1384 1427 4.498520 ATGGTCGACCTGCTCGCG 62.499 66.667 33.39 0.00 42.62 5.87
1390 1433 4.148825 GACCTGCTCGCGGACCAT 62.149 66.667 6.13 0.00 0.00 3.55
1732 1775 2.409651 CTCCAGGAGTACGAGCGC 59.590 66.667 8.54 0.00 0.00 5.92
1816 1859 1.365633 CTGCATCCCCTACGAGCTC 59.634 63.158 2.73 2.73 0.00 4.09
1895 1941 3.533720 TCGGCCTTACGATCCCTG 58.466 61.111 0.00 0.00 38.06 4.45
1896 1942 2.131709 TCGGCCTTACGATCCCTGG 61.132 63.158 0.00 0.00 38.06 4.45
1897 1943 2.111251 GGCCTTACGATCCCTGGC 59.889 66.667 0.00 0.00 42.56 4.85
1962 2008 0.452784 GCTAACGGCAGCACGAAAAG 60.453 55.000 9.87 5.51 41.40 2.27
1963 2009 0.865769 CTAACGGCAGCACGAAAAGT 59.134 50.000 9.87 0.00 37.61 2.66
1964 2010 2.063266 CTAACGGCAGCACGAAAAGTA 58.937 47.619 9.87 0.00 37.61 2.24
1965 2011 0.865769 AACGGCAGCACGAAAAGTAG 59.134 50.000 9.87 0.00 37.61 2.57
2110 2156 2.032681 AACAGCGGCAAGGACCTC 59.967 61.111 1.45 0.00 0.00 3.85
2260 2306 4.717313 GACGCCTTCCACCCCACC 62.717 72.222 0.00 0.00 0.00 4.61
2312 2358 0.907486 CTTCAGCTCATCCTCCACCA 59.093 55.000 0.00 0.00 0.00 4.17
2360 2406 0.518636 CCTCGCCGCCATATGAAATG 59.481 55.000 3.65 0.00 0.00 2.32
2361 2407 0.110056 CTCGCCGCCATATGAAATGC 60.110 55.000 3.65 0.00 0.00 3.56
2362 2408 1.440850 CGCCGCCATATGAAATGCG 60.441 57.895 14.71 14.71 46.14 4.73
2376 2422 1.274703 AATGCGGGATCCACTCCACT 61.275 55.000 15.23 0.00 46.98 4.00
2381 2427 1.202580 CGGGATCCACTCCACTTGATC 60.203 57.143 15.23 0.00 46.98 2.92
2382 2428 2.122768 GGGATCCACTCCACTTGATCT 58.877 52.381 15.23 0.00 46.98 2.75
2383 2429 2.103941 GGGATCCACTCCACTTGATCTC 59.896 54.545 15.23 0.00 46.98 2.75
2384 2430 3.037549 GGATCCACTCCACTTGATCTCT 58.962 50.000 6.95 0.00 44.26 3.10
2385 2431 3.454082 GGATCCACTCCACTTGATCTCTT 59.546 47.826 6.95 0.00 44.26 2.85
2387 2433 5.129485 GGATCCACTCCACTTGATCTCTTTA 59.871 44.000 6.95 0.00 44.26 1.85
2390 2436 6.409704 TCCACTCCACTTGATCTCTTTATTG 58.590 40.000 0.00 0.00 0.00 1.90
2419 2465 9.810231 GTAGCTACTACTACTTCATCGTATTTC 57.190 37.037 16.88 0.00 39.57 2.17
2452 2498 9.271828 ACAATAAAATTGTGAAAATCAAGGGAC 57.728 29.630 4.54 0.00 0.00 4.46
2454 2500 9.492973 AATAAAATTGTGAAAATCAAGGGACTG 57.507 29.630 0.00 0.00 40.86 3.51
2459 2505 3.756963 GTGAAAATCAAGGGACTGGGTAC 59.243 47.826 0.00 0.00 40.86 3.34
2553 2600 9.613428 CACTTAAATTGGTTGATCTATACCTCA 57.387 33.333 11.69 2.29 35.41 3.86
2579 2626 4.406456 TGTTGCAACAAATATCTCCCACT 58.594 39.130 29.36 0.00 35.67 4.00
2595 2642 4.917385 TCCCACTACATGCAACACTATTT 58.083 39.130 0.00 0.00 0.00 1.40
2623 2670 5.734855 ATATCAATGGAAACGTTTCTCCG 57.265 39.130 33.23 21.49 37.50 4.63
2643 2690 3.119990 CCGCCAACGAACTAAAACATGAT 60.120 43.478 0.00 0.00 43.93 2.45
2684 2731 9.626045 AAATAGTGCATTTAGTAAACTTCTTGC 57.374 29.630 10.04 10.04 34.99 4.01
2689 2736 8.268738 GTGCATTTAGTAAACTTCTTGCTTTTG 58.731 33.333 15.54 1.50 0.00 2.44
2704 2751 7.377398 TCTTGCTTTTGTATGTATGCAACAAT 58.623 30.769 1.94 0.00 42.70 2.71
2738 2785 7.273164 TCAGTGCAGCAAAATCATAATAAAACG 59.727 33.333 0.00 0.00 0.00 3.60
2787 2834 6.403333 TGATTGTGCAATAGTACGAAGTTC 57.597 37.500 0.00 0.00 37.78 3.01
2790 2837 4.878439 TGTGCAATAGTACGAAGTTCTGT 58.122 39.130 0.56 3.71 37.78 3.41
2791 2838 6.016213 TGTGCAATAGTACGAAGTTCTGTA 57.984 37.500 0.56 2.76 37.78 2.74
2792 2839 5.860182 TGTGCAATAGTACGAAGTTCTGTAC 59.140 40.000 20.68 20.68 37.78 2.90
2806 2853 9.784680 CGAAGTTCTGTACTTATACAACATACT 57.215 33.333 0.56 0.00 47.00 2.12
2839 2886 6.208599 TGTTGACTCATAGGGGAAAAACATTC 59.791 38.462 0.00 0.00 0.00 2.67
2851 2898 5.278315 GGGAAAAACATTCGCAACTAAGAGT 60.278 40.000 0.99 0.00 0.00 3.24
2908 3047 7.384932 TGCAACGAAATCATGTCGAATATAGAT 59.615 33.333 3.60 0.00 41.02 1.98
2939 3078 6.707440 TTCTTGCAATAAAGAAGTGTGGAA 57.293 33.333 0.00 0.00 40.41 3.53
2940 3079 6.072112 TCTTGCAATAAAGAAGTGTGGAAC 57.928 37.500 0.00 0.00 33.25 3.62
2945 3084 5.163513 CAATAAAGAAGTGTGGAACCATGC 58.836 41.667 0.00 0.00 34.36 4.06
2946 3085 2.664402 AAGAAGTGTGGAACCATGCT 57.336 45.000 0.00 0.00 34.36 3.79
2948 3087 1.421268 AGAAGTGTGGAACCATGCTCA 59.579 47.619 0.00 0.00 34.36 4.26
2949 3088 1.537202 GAAGTGTGGAACCATGCTCAC 59.463 52.381 0.00 0.85 40.41 3.51
2950 3089 0.473755 AGTGTGGAACCATGCTCACA 59.526 50.000 12.48 0.00 41.92 3.58
2951 3090 1.074405 AGTGTGGAACCATGCTCACAT 59.926 47.619 12.48 0.00 41.92 3.21
2965 3104 3.071457 TGCTCACATGTCTCCAGAAGAAA 59.929 43.478 0.00 0.00 35.21 2.52
2973 3112 4.969484 TGTCTCCAGAAGAAACTAAACCC 58.031 43.478 0.00 0.00 35.21 4.11
2974 3113 3.995048 GTCTCCAGAAGAAACTAAACCCG 59.005 47.826 0.00 0.00 35.21 5.28
3050 3189 8.654230 AATCAGCTTGTTGTATGTACATCTAG 57.346 34.615 12.68 5.58 35.89 2.43
3097 3236 8.436200 GCTCCATATTCGACAACAATAGATAAC 58.564 37.037 0.00 0.00 0.00 1.89
3101 3240 8.964150 CATATTCGACAACAATAGATAACGACA 58.036 33.333 0.00 0.00 0.00 4.35
3136 3275 8.815189 GGGAAAACTATGAGACGATACTAAAAC 58.185 37.037 0.00 0.00 0.00 2.43
3139 3278 7.414222 AACTATGAGACGATACTAAAACCCA 57.586 36.000 0.00 0.00 0.00 4.51
3156 3295 1.068741 CCCATAGTCTCGTTAGGGTGC 59.931 57.143 0.00 0.00 0.00 5.01
3192 3331 3.650647 TCCAGAAGGGATTGCACAC 57.349 52.632 0.00 0.00 42.15 3.82
3194 3333 1.355381 TCCAGAAGGGATTGCACACAT 59.645 47.619 0.00 0.00 42.15 3.21
3220 3359 1.284111 TACCTAGGCTCGGTCCCTCA 61.284 60.000 14.77 0.00 35.98 3.86
3242 3381 4.255510 TCACGGAGGTAATACCCTACTT 57.744 45.455 5.71 0.00 39.75 2.24
3249 3388 5.130643 GGAGGTAATACCCTACTTCTGCTTT 59.869 44.000 5.71 0.00 39.75 3.51
3273 3412 7.903995 TTGCTTTGATTGATATTGGGAAAAC 57.096 32.000 0.00 0.00 0.00 2.43
3274 3413 7.002250 TGCTTTGATTGATATTGGGAAAACA 57.998 32.000 0.00 0.00 0.00 2.83
3275 3414 6.873076 TGCTTTGATTGATATTGGGAAAACAC 59.127 34.615 0.00 0.00 0.00 3.32
3276 3415 6.873076 GCTTTGATTGATATTGGGAAAACACA 59.127 34.615 0.00 0.00 0.00 3.72
3325 3465 2.120232 GATGTTGCTACCGAGACGATG 58.880 52.381 0.00 0.00 0.00 3.84
3328 3468 1.320344 TTGCTACCGAGACGATGGCT 61.320 55.000 0.00 0.00 0.00 4.75
3329 3469 0.464916 TGCTACCGAGACGATGGCTA 60.465 55.000 0.00 0.00 0.00 3.93
3330 3470 0.040246 GCTACCGAGACGATGGCTAC 60.040 60.000 0.00 0.00 0.00 3.58
3331 3471 1.306148 CTACCGAGACGATGGCTACA 58.694 55.000 0.00 0.00 0.00 2.74
3332 3472 1.880675 CTACCGAGACGATGGCTACAT 59.119 52.381 0.00 0.00 40.85 2.29
3333 3473 0.385751 ACCGAGACGATGGCTACATG 59.614 55.000 0.00 0.00 37.47 3.21
3334 3474 0.385751 CCGAGACGATGGCTACATGT 59.614 55.000 2.69 2.69 37.47 3.21
3371 3511 7.616528 AATTACCCTTTGATTGATATTGGGG 57.383 36.000 0.00 0.00 37.56 4.96
3405 3545 4.572389 GTGTGAGGGAGTTACAATATGCTG 59.428 45.833 0.00 0.00 0.00 4.41
3406 3546 4.130118 GTGAGGGAGTTACAATATGCTGG 58.870 47.826 0.00 0.00 0.00 4.85
3418 3558 5.628130 ACAATATGCTGGAGATGTTGCTAT 58.372 37.500 0.00 0.00 0.00 2.97
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.186021 CACTACTTAAGCTTTCTCCTCTCCA 59.814 44.000 3.20 0.00 0.00 3.86
1 2 5.186215 ACACTACTTAAGCTTTCTCCTCTCC 59.814 44.000 3.20 0.00 0.00 3.71
2 3 6.096695 CACACTACTTAAGCTTTCTCCTCTC 58.903 44.000 3.20 0.00 0.00 3.20
3 4 5.046950 CCACACTACTTAAGCTTTCTCCTCT 60.047 44.000 3.20 0.00 0.00 3.69
4 5 5.172205 CCACACTACTTAAGCTTTCTCCTC 58.828 45.833 3.20 0.00 0.00 3.71
5 6 4.563786 GCCACACTACTTAAGCTTTCTCCT 60.564 45.833 3.20 0.00 0.00 3.69
6 7 3.685272 GCCACACTACTTAAGCTTTCTCC 59.315 47.826 3.20 0.00 0.00 3.71
7 8 4.570930 AGCCACACTACTTAAGCTTTCTC 58.429 43.478 3.20 0.00 0.00 2.87
8 9 4.570930 GAGCCACACTACTTAAGCTTTCT 58.429 43.478 3.20 0.00 0.00 2.52
9 10 3.368236 CGAGCCACACTACTTAAGCTTTC 59.632 47.826 3.20 0.00 0.00 2.62
10 11 3.326747 CGAGCCACACTACTTAAGCTTT 58.673 45.455 3.20 0.00 0.00 3.51
11 12 2.353803 CCGAGCCACACTACTTAAGCTT 60.354 50.000 3.48 3.48 0.00 3.74
12 13 1.204941 CCGAGCCACACTACTTAAGCT 59.795 52.381 1.29 0.00 0.00 3.74
13 14 1.641577 CCGAGCCACACTACTTAAGC 58.358 55.000 1.29 0.00 0.00 3.09
14 15 1.739371 GCCCGAGCCACACTACTTAAG 60.739 57.143 0.00 0.00 0.00 1.85
15 16 0.248289 GCCCGAGCCACACTACTTAA 59.752 55.000 0.00 0.00 0.00 1.85
16 17 0.901114 TGCCCGAGCCACACTACTTA 60.901 55.000 0.00 0.00 38.69 2.24
17 18 1.553690 ATGCCCGAGCCACACTACTT 61.554 55.000 0.00 0.00 38.69 2.24
18 19 1.553690 AATGCCCGAGCCACACTACT 61.554 55.000 0.00 0.00 38.69 2.57
19 20 1.078426 AATGCCCGAGCCACACTAC 60.078 57.895 0.00 0.00 38.69 2.73
20 21 1.220749 GAATGCCCGAGCCACACTA 59.779 57.895 0.00 0.00 38.69 2.74
21 22 2.045926 GAATGCCCGAGCCACACT 60.046 61.111 0.00 0.00 38.69 3.55
22 23 3.134127 GGAATGCCCGAGCCACAC 61.134 66.667 0.00 0.00 38.69 3.82
23 24 2.891941 GATGGAATGCCCGAGCCACA 62.892 60.000 0.00 0.00 38.69 4.17
24 25 2.124151 ATGGAATGCCCGAGCCAC 60.124 61.111 0.00 0.00 38.69 5.01
25 26 2.192979 GATGGAATGCCCGAGCCA 59.807 61.111 0.00 0.00 38.69 4.75
26 27 2.940890 TTCGATGGAATGCCCGAGCC 62.941 60.000 0.00 0.00 38.69 4.70
27 28 1.523711 TTCGATGGAATGCCCGAGC 60.524 57.895 0.00 0.00 37.93 5.03
28 29 0.461870 TGTTCGATGGAATGCCCGAG 60.462 55.000 0.00 0.00 37.93 4.63
29 30 0.742990 GTGTTCGATGGAATGCCCGA 60.743 55.000 0.00 0.00 37.93 5.14
30 31 1.714899 GGTGTTCGATGGAATGCCCG 61.715 60.000 0.00 0.00 37.93 6.13
31 32 0.394352 AGGTGTTCGATGGAATGCCC 60.394 55.000 8.77 3.38 34.05 5.36
32 33 1.133025 CAAGGTGTTCGATGGAATGCC 59.867 52.381 0.00 0.00 34.05 4.40
33 34 1.812571 ACAAGGTGTTCGATGGAATGC 59.187 47.619 0.00 0.00 34.05 3.56
34 35 2.813754 ACACAAGGTGTTCGATGGAATG 59.186 45.455 0.00 0.00 45.08 2.67
35 36 2.813754 CACACAAGGTGTTCGATGGAAT 59.186 45.455 0.00 0.00 45.08 3.01
36 37 2.217750 CACACAAGGTGTTCGATGGAA 58.782 47.619 0.00 0.00 45.08 3.53
37 38 1.877637 CACACAAGGTGTTCGATGGA 58.122 50.000 0.00 0.00 45.08 3.41
38 39 0.238289 GCACACAAGGTGTTCGATGG 59.762 55.000 0.00 0.00 45.08 3.51
39 40 0.943673 TGCACACAAGGTGTTCGATG 59.056 50.000 0.00 0.00 45.08 3.84
40 41 1.896220 ATGCACACAAGGTGTTCGAT 58.104 45.000 0.00 0.00 45.08 3.59
41 42 2.036604 TCTATGCACACAAGGTGTTCGA 59.963 45.455 0.00 0.00 45.08 3.71
42 43 2.412870 TCTATGCACACAAGGTGTTCG 58.587 47.619 0.00 0.00 45.08 3.95
43 44 3.189287 CCTTCTATGCACACAAGGTGTTC 59.811 47.826 10.13 0.00 45.08 3.18
44 45 3.149196 CCTTCTATGCACACAAGGTGTT 58.851 45.455 10.13 0.00 45.08 3.32
46 47 2.783135 ACCTTCTATGCACACAAGGTG 58.217 47.619 19.48 0.00 45.69 4.00
48 49 3.005554 CTCACCTTCTATGCACACAAGG 58.994 50.000 14.95 14.95 41.20 3.61
49 50 2.417933 GCTCACCTTCTATGCACACAAG 59.582 50.000 0.00 0.00 0.00 3.16
50 51 2.038952 AGCTCACCTTCTATGCACACAA 59.961 45.455 0.00 0.00 0.00 3.33
51 52 1.625315 AGCTCACCTTCTATGCACACA 59.375 47.619 0.00 0.00 0.00 3.72
52 53 2.393271 AGCTCACCTTCTATGCACAC 57.607 50.000 0.00 0.00 0.00 3.82
53 54 3.365472 TCTAGCTCACCTTCTATGCACA 58.635 45.455 0.00 0.00 0.00 4.57
54 55 3.798548 GCTCTAGCTCACCTTCTATGCAC 60.799 52.174 0.00 0.00 38.21 4.57
55 56 2.363680 GCTCTAGCTCACCTTCTATGCA 59.636 50.000 0.00 0.00 38.21 3.96
56 57 2.363680 TGCTCTAGCTCACCTTCTATGC 59.636 50.000 3.26 0.00 42.66 3.14
57 58 3.243704 GGTGCTCTAGCTCACCTTCTATG 60.244 52.174 19.69 0.00 46.90 2.23
58 59 2.962421 GGTGCTCTAGCTCACCTTCTAT 59.038 50.000 19.69 0.00 46.90 1.98
59 60 2.379972 GGTGCTCTAGCTCACCTTCTA 58.620 52.381 19.69 0.00 46.90 2.10
60 61 1.190643 GGTGCTCTAGCTCACCTTCT 58.809 55.000 19.69 0.00 46.90 2.85
61 62 3.750828 GGTGCTCTAGCTCACCTTC 57.249 57.895 19.69 1.50 46.90 3.46
65 66 0.321671 TTGGTGGTGCTCTAGCTCAC 59.678 55.000 15.59 15.59 42.66 3.51
66 67 0.610174 CTTGGTGGTGCTCTAGCTCA 59.390 55.000 3.26 0.00 42.66 4.26
67 68 0.742635 GCTTGGTGGTGCTCTAGCTC 60.743 60.000 3.26 0.00 42.66 4.09
68 69 1.298014 GCTTGGTGGTGCTCTAGCT 59.702 57.895 3.26 0.00 42.66 3.32
69 70 1.746991 GGCTTGGTGGTGCTCTAGC 60.747 63.158 0.00 0.00 42.50 3.42
70 71 1.078143 GGGCTTGGTGGTGCTCTAG 60.078 63.158 0.00 0.00 0.00 2.43
71 72 1.538876 AGGGCTTGGTGGTGCTCTA 60.539 57.895 0.00 0.00 38.38 2.43
72 73 2.856000 AGGGCTTGGTGGTGCTCT 60.856 61.111 0.00 0.00 34.81 4.09
73 74 2.360475 GAGGGCTTGGTGGTGCTC 60.360 66.667 0.00 0.00 0.00 4.26
74 75 2.856000 AGAGGGCTTGGTGGTGCT 60.856 61.111 0.00 0.00 0.00 4.40
75 76 2.360475 GAGAGGGCTTGGTGGTGC 60.360 66.667 0.00 0.00 0.00 5.01
76 77 2.352805 GGAGAGGGCTTGGTGGTG 59.647 66.667 0.00 0.00 0.00 4.17
77 78 2.936032 GGGAGAGGGCTTGGTGGT 60.936 66.667 0.00 0.00 0.00 4.16
78 79 3.732849 GGGGAGAGGGCTTGGTGG 61.733 72.222 0.00 0.00 0.00 4.61
79 80 3.732849 GGGGGAGAGGGCTTGGTG 61.733 72.222 0.00 0.00 0.00 4.17
80 81 3.952799 GAGGGGGAGAGGGCTTGGT 62.953 68.421 0.00 0.00 0.00 3.67
81 82 3.093172 GAGGGGGAGAGGGCTTGG 61.093 72.222 0.00 0.00 0.00 3.61
82 83 3.474570 CGAGGGGGAGAGGGCTTG 61.475 72.222 0.00 0.00 0.00 4.01
83 84 4.806339 CCGAGGGGGAGAGGGCTT 62.806 72.222 0.00 0.00 38.47 4.35
88 89 3.984186 TTCTGGCCGAGGGGGAGAG 62.984 68.421 0.00 0.00 38.47 3.20
89 90 3.556038 TTTCTGGCCGAGGGGGAGA 62.556 63.158 0.00 0.00 38.47 3.71
90 91 2.137177 TTTTTCTGGCCGAGGGGGAG 62.137 60.000 0.00 0.00 38.47 4.30
91 92 2.157452 TTTTTCTGGCCGAGGGGGA 61.157 57.895 0.00 0.00 38.47 4.81
92 93 2.438795 TTTTTCTGGCCGAGGGGG 59.561 61.111 0.00 0.00 39.58 5.40
116 117 1.344458 CGTAAGAGCAGAGCACACTG 58.656 55.000 0.00 0.00 43.02 3.66
117 118 0.389166 GCGTAAGAGCAGAGCACACT 60.389 55.000 0.00 0.00 43.02 3.55
118 119 1.678269 CGCGTAAGAGCAGAGCACAC 61.678 60.000 0.00 0.00 43.02 3.82
119 120 1.444383 CGCGTAAGAGCAGAGCACA 60.444 57.895 0.00 0.00 43.02 4.57
120 121 1.136872 CTCGCGTAAGAGCAGAGCAC 61.137 60.000 5.77 0.00 43.02 4.40
121 122 1.137614 CTCGCGTAAGAGCAGAGCA 59.862 57.895 5.77 0.00 43.02 4.26
122 123 1.587613 CCTCGCGTAAGAGCAGAGC 60.588 63.158 5.77 0.00 43.02 4.09
123 124 1.064946 CCCTCGCGTAAGAGCAGAG 59.935 63.158 5.77 0.00 43.02 3.35
124 125 2.415608 CCCCTCGCGTAAGAGCAGA 61.416 63.158 5.77 0.00 43.02 4.26
125 126 2.105128 CCCCTCGCGTAAGAGCAG 59.895 66.667 5.77 0.00 43.02 4.24
126 127 2.842188 TACCCCCTCGCGTAAGAGCA 62.842 60.000 5.77 0.00 43.02 4.26
127 128 1.461911 ATACCCCCTCGCGTAAGAGC 61.462 60.000 5.77 0.00 43.02 4.09
128 129 1.901591 TATACCCCCTCGCGTAAGAG 58.098 55.000 5.77 0.00 43.02 2.85
129 130 2.592102 ATATACCCCCTCGCGTAAGA 57.408 50.000 5.77 0.00 43.02 2.10
130 131 4.518211 CCTATATATACCCCCTCGCGTAAG 59.482 50.000 5.77 0.00 43.44 2.34
131 132 4.464008 CCTATATATACCCCCTCGCGTAA 58.536 47.826 5.77 0.00 0.00 3.18
132 133 3.748668 GCCTATATATACCCCCTCGCGTA 60.749 52.174 5.77 0.00 0.00 4.42
133 134 2.941480 CCTATATATACCCCCTCGCGT 58.059 52.381 5.77 0.00 0.00 6.01
134 135 1.612463 GCCTATATATACCCCCTCGCG 59.388 57.143 0.00 0.00 0.00 5.87
135 136 2.364647 GTGCCTATATATACCCCCTCGC 59.635 54.545 0.00 0.00 0.00 5.03
136 137 2.963782 GGTGCCTATATATACCCCCTCG 59.036 54.545 0.00 0.00 0.00 4.63
137 138 4.224762 GAGGTGCCTATATATACCCCCTC 58.775 52.174 0.00 3.95 33.67 4.30
138 139 3.605707 TGAGGTGCCTATATATACCCCCT 59.394 47.826 0.00 0.00 33.67 4.79
139 140 4.003584 TGAGGTGCCTATATATACCCCC 57.996 50.000 0.00 0.00 33.67 5.40
140 141 5.163195 CCAATGAGGTGCCTATATATACCCC 60.163 48.000 0.00 0.00 33.67 4.95
141 142 5.930135 CCAATGAGGTGCCTATATATACCC 58.070 45.833 0.00 0.00 33.67 3.69
154 155 4.594558 ACCAATCGGGACCAATGAGGTG 62.595 54.545 0.00 0.00 45.37 4.00
155 156 2.463489 ACCAATCGGGACCAATGAGGT 61.463 52.381 0.00 0.00 45.58 3.85
156 157 0.255890 ACCAATCGGGACCAATGAGG 59.744 55.000 0.00 0.00 41.62 3.86
157 158 1.065491 TCACCAATCGGGACCAATGAG 60.065 52.381 0.00 0.00 41.15 2.90
158 159 0.988063 TCACCAATCGGGACCAATGA 59.012 50.000 0.00 0.00 41.15 2.57
159 160 1.094785 GTCACCAATCGGGACCAATG 58.905 55.000 0.00 0.00 41.15 2.82
160 161 0.695924 TGTCACCAATCGGGACCAAT 59.304 50.000 0.00 0.00 41.15 3.16
161 162 0.036164 CTGTCACCAATCGGGACCAA 59.964 55.000 0.00 0.00 41.15 3.67
162 163 1.676968 CTGTCACCAATCGGGACCA 59.323 57.895 0.00 0.00 41.15 4.02
163 164 1.745489 GCTGTCACCAATCGGGACC 60.745 63.158 0.00 0.00 41.15 4.46
164 165 1.745489 GGCTGTCACCAATCGGGAC 60.745 63.158 0.00 0.00 41.15 4.46
165 166 1.488705 AAGGCTGTCACCAATCGGGA 61.489 55.000 0.00 0.00 41.15 5.14
166 167 0.609131 AAAGGCTGTCACCAATCGGG 60.609 55.000 0.00 0.00 44.81 5.14
167 168 2.009774 CTAAAGGCTGTCACCAATCGG 58.990 52.381 0.00 0.00 38.77 4.18
168 169 2.673368 GACTAAAGGCTGTCACCAATCG 59.327 50.000 0.00 0.00 33.75 3.34
169 170 3.010420 GGACTAAAGGCTGTCACCAATC 58.990 50.000 5.90 0.00 35.11 2.67
170 171 2.290960 GGGACTAAAGGCTGTCACCAAT 60.291 50.000 5.90 0.00 35.11 3.16
171 172 1.073284 GGGACTAAAGGCTGTCACCAA 59.927 52.381 5.90 0.00 35.11 3.67
172 173 0.690762 GGGACTAAAGGCTGTCACCA 59.309 55.000 5.90 0.00 35.11 4.17
173 174 0.391263 CGGGACTAAAGGCTGTCACC 60.391 60.000 5.90 4.13 33.38 4.02
174 175 0.391263 CCGGGACTAAAGGCTGTCAC 60.391 60.000 0.00 1.18 35.11 3.67
175 176 0.834687 ACCGGGACTAAAGGCTGTCA 60.835 55.000 6.32 0.00 35.11 3.58
176 177 0.323957 AACCGGGACTAAAGGCTGTC 59.676 55.000 6.32 0.00 0.00 3.51
177 178 0.323957 GAACCGGGACTAAAGGCTGT 59.676 55.000 6.32 0.00 0.00 4.40
178 179 0.323629 TGAACCGGGACTAAAGGCTG 59.676 55.000 6.32 0.00 0.00 4.85
179 180 1.065418 CATGAACCGGGACTAAAGGCT 60.065 52.381 6.32 0.00 0.00 4.58
180 181 1.379527 CATGAACCGGGACTAAAGGC 58.620 55.000 6.32 0.00 0.00 4.35
181 182 1.379527 GCATGAACCGGGACTAAAGG 58.620 55.000 6.32 0.00 0.00 3.11
182 183 1.339631 TGGCATGAACCGGGACTAAAG 60.340 52.381 6.32 0.00 0.00 1.85
183 184 0.693622 TGGCATGAACCGGGACTAAA 59.306 50.000 6.32 0.00 0.00 1.85
184 185 0.035820 GTGGCATGAACCGGGACTAA 60.036 55.000 6.32 0.00 0.00 2.24
185 186 1.600107 GTGGCATGAACCGGGACTA 59.400 57.895 6.32 0.00 0.00 2.59
186 187 2.351276 GTGGCATGAACCGGGACT 59.649 61.111 6.32 0.00 0.00 3.85
187 188 2.750237 GGTGGCATGAACCGGGAC 60.750 66.667 6.32 0.00 0.00 4.46
188 189 2.835049 TTGGTGGCATGAACCGGGA 61.835 57.895 6.32 0.00 40.86 5.14
189 190 2.282816 TTGGTGGCATGAACCGGG 60.283 61.111 6.32 0.00 40.86 5.73
190 191 2.635443 GGTTGGTGGCATGAACCGG 61.635 63.158 13.05 0.00 40.86 5.28
191 192 1.603455 AGGTTGGTGGCATGAACCG 60.603 57.895 19.23 0.00 43.39 4.44
192 193 1.535204 CCAGGTTGGTGGCATGAACC 61.535 60.000 18.25 18.25 39.65 3.62
193 194 0.539438 TCCAGGTTGGTGGCATGAAC 60.539 55.000 0.00 0.00 39.03 3.18
194 195 0.539438 GTCCAGGTTGGTGGCATGAA 60.539 55.000 0.00 0.00 39.03 2.57
195 196 1.074775 GTCCAGGTTGGTGGCATGA 59.925 57.895 0.00 0.00 39.03 3.07
196 197 1.978617 GGTCCAGGTTGGTGGCATG 60.979 63.158 0.00 0.00 39.03 4.06
197 198 2.017668 TTGGTCCAGGTTGGTGGCAT 62.018 55.000 0.00 0.00 39.03 4.40
198 199 2.017668 ATTGGTCCAGGTTGGTGGCA 62.018 55.000 0.00 0.00 39.03 4.92
199 200 1.228862 ATTGGTCCAGGTTGGTGGC 60.229 57.895 0.00 0.00 39.03 5.01
200 201 0.899717 CCATTGGTCCAGGTTGGTGG 60.900 60.000 8.68 1.86 39.03 4.61
201 202 0.178964 ACCATTGGTCCAGGTTGGTG 60.179 55.000 17.81 2.36 39.18 4.17
202 203 0.178964 CACCATTGGTCCAGGTTGGT 60.179 55.000 5.04 14.42 41.27 3.67
203 204 0.899717 CCACCATTGGTCCAGGTTGG 60.900 60.000 5.04 13.39 38.23 3.77
204 205 2.657297 CCACCATTGGTCCAGGTTG 58.343 57.895 5.04 0.00 38.23 3.77
214 215 2.681064 CCTGGCCCACCACCATTG 60.681 66.667 0.00 0.00 42.67 2.82
215 216 2.863484 TCCTGGCCCACCACCATT 60.863 61.111 0.00 0.00 42.67 3.16
216 217 3.341629 CTCCTGGCCCACCACCAT 61.342 66.667 0.00 0.00 42.67 3.55
227 228 3.801997 AATGGGCCTCGCTCCTGG 61.802 66.667 4.53 0.00 0.00 4.45
228 229 2.515523 CAATGGGCCTCGCTCCTG 60.516 66.667 4.53 0.00 0.00 3.86
229 230 3.801997 CCAATGGGCCTCGCTCCT 61.802 66.667 4.53 0.00 0.00 3.69
230 231 4.115199 ACCAATGGGCCTCGCTCC 62.115 66.667 4.53 0.00 37.90 4.70
231 232 2.514824 GACCAATGGGCCTCGCTC 60.515 66.667 4.53 0.00 37.90 5.03
238 239 2.754254 GAACCGGGACCAATGGGC 60.754 66.667 6.32 0.00 37.90 5.36
239 240 2.437716 CGAACCGGGACCAATGGG 60.438 66.667 6.32 0.00 41.29 4.00
240 241 1.743995 GACGAACCGGGACCAATGG 60.744 63.158 6.32 0.00 0.00 3.16
241 242 1.743995 GGACGAACCGGGACCAATG 60.744 63.158 6.32 0.00 0.00 2.82
242 243 2.666812 GGACGAACCGGGACCAAT 59.333 61.111 6.32 0.00 0.00 3.16
243 244 3.628982 GGGACGAACCGGGACCAA 61.629 66.667 6.32 0.00 40.11 3.67
244 245 4.938074 TGGGACGAACCGGGACCA 62.938 66.667 6.32 1.29 40.11 4.02
245 246 4.383861 GTGGGACGAACCGGGACC 62.384 72.222 6.32 0.00 40.11 4.46
246 247 4.383861 GGTGGGACGAACCGGGAC 62.384 72.222 6.32 0.00 40.11 4.46
247 248 4.938074 TGGTGGGACGAACCGGGA 62.938 66.667 6.32 0.00 40.86 5.14
248 249 3.943691 TTGGTGGGACGAACCGGG 61.944 66.667 6.32 0.00 40.86 5.73
249 250 2.667199 GTTGGTGGGACGAACCGG 60.667 66.667 0.00 0.00 40.86 5.28
250 251 2.667199 GGTTGGTGGGACGAACCG 60.667 66.667 5.08 0.00 44.79 4.44
252 253 2.667199 CCGGTTGGTGGGACGAAC 60.667 66.667 0.00 0.00 36.30 3.95
259 260 1.455959 TTTTGGTCCCGGTTGGTGG 60.456 57.895 0.00 0.00 34.77 4.61
260 261 1.460273 CCTTTTGGTCCCGGTTGGTG 61.460 60.000 0.00 0.00 34.77 4.17
261 262 1.152631 CCTTTTGGTCCCGGTTGGT 60.153 57.895 0.00 0.00 34.77 3.67
262 263 3.771978 CCTTTTGGTCCCGGTTGG 58.228 61.111 0.00 0.00 34.07 3.77
273 274 0.865769 CGGTTCGTCTGGACCTTTTG 59.134 55.000 0.00 0.00 0.00 2.44
274 275 0.250166 CCGGTTCGTCTGGACCTTTT 60.250 55.000 0.00 0.00 45.09 2.27
275 276 1.370064 CCGGTTCGTCTGGACCTTT 59.630 57.895 0.00 0.00 45.09 3.11
276 277 2.580601 CCCGGTTCGTCTGGACCTT 61.581 63.158 0.00 0.00 45.09 3.50
277 278 2.995574 CCCGGTTCGTCTGGACCT 60.996 66.667 0.00 0.00 45.09 3.85
278 279 2.993264 TCCCGGTTCGTCTGGACC 60.993 66.667 0.00 0.00 45.09 4.46
279 280 2.260743 GTCCCGGTTCGTCTGGAC 59.739 66.667 0.00 0.00 45.09 4.02
280 281 2.993264 GGTCCCGGTTCGTCTGGA 60.993 66.667 0.00 0.00 45.09 3.86
281 282 2.180159 ATTGGTCCCGGTTCGTCTGG 62.180 60.000 0.00 2.18 42.06 3.86
282 283 1.019278 CATTGGTCCCGGTTCGTCTG 61.019 60.000 0.00 0.00 0.00 3.51
283 284 1.295423 CATTGGTCCCGGTTCGTCT 59.705 57.895 0.00 0.00 0.00 4.18
284 285 1.743995 CCATTGGTCCCGGTTCGTC 60.744 63.158 0.00 0.00 0.00 4.20
285 286 2.349755 CCATTGGTCCCGGTTCGT 59.650 61.111 0.00 0.00 0.00 3.85
286 287 3.131478 GCCATTGGTCCCGGTTCG 61.131 66.667 0.00 0.00 0.00 3.95
287 288 2.754254 GGCCATTGGTCCCGGTTC 60.754 66.667 0.00 0.00 0.00 3.62
288 289 4.376170 GGGCCATTGGTCCCGGTT 62.376 66.667 15.98 0.00 42.67 4.44
294 295 3.619938 CCACATGGGCCATTGGTC 58.380 61.111 26.57 0.54 0.00 4.02
322 323 2.266055 GGTTCGTGAGCCCAGAGG 59.734 66.667 0.00 0.00 0.00 3.69
323 324 2.125912 CGGTTCGTGAGCCCAGAG 60.126 66.667 0.00 0.00 0.00 3.35
324 325 3.691342 CCGGTTCGTGAGCCCAGA 61.691 66.667 0.00 0.00 0.00 3.86
325 326 4.760047 CCCGGTTCGTGAGCCCAG 62.760 72.222 0.00 0.00 0.00 4.45
327 328 4.754667 GACCCGGTTCGTGAGCCC 62.755 72.222 0.00 0.00 0.00 5.19
328 329 4.754667 GGACCCGGTTCGTGAGCC 62.755 72.222 0.00 0.00 0.00 4.70
329 330 2.798148 ATTGGACCCGGTTCGTGAGC 62.798 60.000 0.00 0.00 0.00 4.26
330 331 1.019278 CATTGGACCCGGTTCGTGAG 61.019 60.000 0.00 0.00 0.00 3.51
331 332 1.004320 CATTGGACCCGGTTCGTGA 60.004 57.895 0.00 0.00 0.00 4.35
332 333 2.686816 GCATTGGACCCGGTTCGTG 61.687 63.158 0.00 0.00 0.00 4.35
333 334 2.359478 GCATTGGACCCGGTTCGT 60.359 61.111 0.00 0.00 0.00 3.85
334 335 3.131478 GGCATTGGACCCGGTTCG 61.131 66.667 0.00 0.00 0.00 3.95
335 336 2.754254 GGGCATTGGACCCGGTTC 60.754 66.667 0.00 0.00 37.67 3.62
341 342 3.632896 CAATGGGGGCATTGGACC 58.367 61.111 0.00 0.00 43.93 4.46
350 351 3.655350 GAACCGGGACCAATGGGGG 62.655 68.421 6.32 1.69 42.91 5.40
351 352 1.276140 TAGAACCGGGACCAATGGGG 61.276 60.000 6.32 0.00 44.81 4.96
352 353 0.180406 CTAGAACCGGGACCAATGGG 59.820 60.000 6.32 0.00 41.29 4.00
353 354 1.134491 GTCTAGAACCGGGACCAATGG 60.134 57.143 6.32 0.00 0.00 3.16
354 355 1.831736 AGTCTAGAACCGGGACCAATG 59.168 52.381 6.32 0.00 0.00 2.82
355 356 1.831736 CAGTCTAGAACCGGGACCAAT 59.168 52.381 6.32 0.00 0.00 3.16
356 357 1.203087 TCAGTCTAGAACCGGGACCAA 60.203 52.381 6.32 0.00 0.00 3.67
357 358 0.406750 TCAGTCTAGAACCGGGACCA 59.593 55.000 6.32 0.00 0.00 4.02
358 359 1.204231 GTTCAGTCTAGAACCGGGACC 59.796 57.143 6.32 0.00 41.52 4.46
359 360 2.651135 GTTCAGTCTAGAACCGGGAC 57.349 55.000 6.32 2.53 41.52 4.46
365 366 5.979288 TTAGTCCCAGTTCAGTCTAGAAC 57.021 43.478 0.00 0.00 46.35 3.01
366 367 5.422331 CCATTAGTCCCAGTTCAGTCTAGAA 59.578 44.000 0.00 0.00 0.00 2.10
367 368 4.956700 CCATTAGTCCCAGTTCAGTCTAGA 59.043 45.833 0.00 0.00 0.00 2.43
368 369 4.100189 CCCATTAGTCCCAGTTCAGTCTAG 59.900 50.000 0.00 0.00 0.00 2.43
369 370 4.030913 CCCATTAGTCCCAGTTCAGTCTA 58.969 47.826 0.00 0.00 0.00 2.59
370 371 2.840651 CCCATTAGTCCCAGTTCAGTCT 59.159 50.000 0.00 0.00 0.00 3.24
371 372 2.681097 GCCCATTAGTCCCAGTTCAGTC 60.681 54.545 0.00 0.00 0.00 3.51
372 373 1.282157 GCCCATTAGTCCCAGTTCAGT 59.718 52.381 0.00 0.00 0.00 3.41
373 374 1.561542 AGCCCATTAGTCCCAGTTCAG 59.438 52.381 0.00 0.00 0.00 3.02
374 375 1.281867 CAGCCCATTAGTCCCAGTTCA 59.718 52.381 0.00 0.00 0.00 3.18
375 376 1.559682 TCAGCCCATTAGTCCCAGTTC 59.440 52.381 0.00 0.00 0.00 3.01
376 377 1.282157 GTCAGCCCATTAGTCCCAGTT 59.718 52.381 0.00 0.00 0.00 3.16
377 378 0.912486 GTCAGCCCATTAGTCCCAGT 59.088 55.000 0.00 0.00 0.00 4.00
378 379 0.181350 GGTCAGCCCATTAGTCCCAG 59.819 60.000 0.00 0.00 0.00 4.45
379 380 2.307153 GGTCAGCCCATTAGTCCCA 58.693 57.895 0.00 0.00 0.00 4.37
393 394 4.974438 AAGGTCCAGGCCGGGTCA 62.974 66.667 22.25 0.00 34.36 4.02
394 395 3.647771 AAAGGTCCAGGCCGGGTC 61.648 66.667 22.25 16.31 34.36 4.46
395 396 3.966543 CAAAGGTCCAGGCCGGGT 61.967 66.667 22.25 0.00 34.36 5.28
401 402 2.386391 AAAGGGGGCAAAGGTCCAGG 62.386 60.000 0.00 0.00 42.08 4.45
402 403 0.471780 AAAAGGGGGCAAAGGTCCAG 60.472 55.000 0.00 0.00 42.08 3.86
403 404 0.471022 GAAAAGGGGGCAAAGGTCCA 60.471 55.000 0.00 0.00 42.08 4.02
404 405 0.178932 AGAAAAGGGGGCAAAGGTCC 60.179 55.000 0.00 0.00 38.40 4.46
405 406 2.168496 GTAGAAAAGGGGGCAAAGGTC 58.832 52.381 0.00 0.00 0.00 3.85
406 407 1.787058 AGTAGAAAAGGGGGCAAAGGT 59.213 47.619 0.00 0.00 0.00 3.50
407 408 2.604912 AGTAGAAAAGGGGGCAAAGG 57.395 50.000 0.00 0.00 0.00 3.11
408 409 4.010349 CACTAGTAGAAAAGGGGGCAAAG 58.990 47.826 3.59 0.00 0.00 2.77
409 410 3.396611 ACACTAGTAGAAAAGGGGGCAAA 59.603 43.478 3.59 0.00 0.00 3.68
410 411 2.983898 ACACTAGTAGAAAAGGGGGCAA 59.016 45.455 3.59 0.00 0.00 4.52
411 412 2.304761 CACACTAGTAGAAAAGGGGGCA 59.695 50.000 3.59 0.00 0.00 5.36
412 413 2.940083 GCACACTAGTAGAAAAGGGGGC 60.940 54.545 3.59 0.00 38.60 5.80
413 414 2.355818 GGCACACTAGTAGAAAAGGGGG 60.356 54.545 3.59 0.00 0.00 5.40
414 415 2.355818 GGGCACACTAGTAGAAAAGGGG 60.356 54.545 3.59 0.00 0.00 4.79
415 416 2.572104 AGGGCACACTAGTAGAAAAGGG 59.428 50.000 3.59 0.00 0.00 3.95
416 417 3.676324 CGAGGGCACACTAGTAGAAAAGG 60.676 52.174 3.59 0.00 0.00 3.11
417 418 3.512680 CGAGGGCACACTAGTAGAAAAG 58.487 50.000 3.59 0.00 0.00 2.27
418 419 2.353406 GCGAGGGCACACTAGTAGAAAA 60.353 50.000 3.59 0.00 39.62 2.29
419 420 1.203994 GCGAGGGCACACTAGTAGAAA 59.796 52.381 3.59 0.00 39.62 2.52
420 421 0.815734 GCGAGGGCACACTAGTAGAA 59.184 55.000 3.59 0.00 39.62 2.10
421 422 0.323087 TGCGAGGGCACACTAGTAGA 60.323 55.000 3.59 0.00 46.21 2.59
422 423 2.189833 TGCGAGGGCACACTAGTAG 58.810 57.895 0.00 0.00 46.21 2.57
423 424 4.426971 TGCGAGGGCACACTAGTA 57.573 55.556 0.00 0.00 46.21 1.82
437 438 3.197790 CGGCAGAGGTTGGATGCG 61.198 66.667 0.00 0.00 40.90 4.73
460 461 1.384525 CAGTAGCTCTAGACGGCACT 58.615 55.000 6.73 5.38 0.00 4.40
484 485 4.421515 AGCTGCTGCGGCTGGATT 62.422 61.111 33.38 10.84 45.19 3.01
493 494 2.688794 GCACTTCAGGAGCTGCTGC 61.689 63.158 28.76 15.10 40.05 5.25
495 496 0.605860 CTTGCACTTCAGGAGCTGCT 60.606 55.000 0.00 0.00 35.09 4.24
496 497 0.604780 TCTTGCACTTCAGGAGCTGC 60.605 55.000 0.00 0.00 34.81 5.25
498 499 1.696336 TCTTCTTGCACTTCAGGAGCT 59.304 47.619 0.00 0.00 32.09 4.09
506 507 2.237143 TCGGGATCATCTTCTTGCACTT 59.763 45.455 0.00 0.00 0.00 3.16
524 525 1.227263 CTTAGGATGGCGGTGTCGG 60.227 63.158 0.00 0.00 36.79 4.79
526 527 0.535335 TGTCTTAGGATGGCGGTGTC 59.465 55.000 0.00 0.00 0.00 3.67
529 535 1.794714 ATCTGTCTTAGGATGGCGGT 58.205 50.000 0.00 0.00 0.00 5.68
607 613 1.095807 GGTGAAATCCTAGGTGCCGC 61.096 60.000 9.08 3.73 0.00 6.53
647 653 4.631740 GTTTGGGGTGGGGTGGGG 62.632 72.222 0.00 0.00 0.00 4.96
648 654 4.631740 GGTTTGGGGTGGGGTGGG 62.632 72.222 0.00 0.00 0.00 4.61
649 655 4.631740 GGGTTTGGGGTGGGGTGG 62.632 72.222 0.00 0.00 0.00 4.61
650 656 4.986708 CGGGTTTGGGGTGGGGTG 62.987 72.222 0.00 0.00 0.00 4.61
652 658 4.986708 CACGGGTTTGGGGTGGGG 62.987 72.222 0.00 0.00 0.00 4.96
653 659 4.986708 CCACGGGTTTGGGGTGGG 62.987 72.222 1.55 0.00 45.84 4.61
655 661 2.282180 CTCCACGGGTTTGGGGTG 60.282 66.667 0.00 0.00 37.24 4.61
656 662 4.280019 GCTCCACGGGTTTGGGGT 62.280 66.667 0.00 0.00 39.66 4.95
657 663 3.801068 TTGCTCCACGGGTTTGGGG 62.801 63.158 0.00 0.00 40.59 4.96
658 664 1.184970 ATTTGCTCCACGGGTTTGGG 61.185 55.000 0.00 0.00 37.24 4.12
659 665 0.678950 AATTTGCTCCACGGGTTTGG 59.321 50.000 0.00 0.00 38.10 3.28
663 669 1.606313 CCCAATTTGCTCCACGGGT 60.606 57.895 0.00 0.00 0.00 5.28
720 726 6.258068 CACCTAGGATCGTTAATGAGGTTTTC 59.742 42.308 17.98 0.00 33.55 2.29
725 731 3.069586 TGCACCTAGGATCGTTAATGAGG 59.930 47.826 17.98 1.31 0.00 3.86
738 744 4.051922 GTTTACTCGATCATGCACCTAGG 58.948 47.826 7.41 7.41 0.00 3.02
739 745 4.051922 GGTTTACTCGATCATGCACCTAG 58.948 47.826 0.00 0.00 0.00 3.02
740 746 3.449377 TGGTTTACTCGATCATGCACCTA 59.551 43.478 0.00 0.00 0.00 3.08
742 748 2.351726 GTGGTTTACTCGATCATGCACC 59.648 50.000 0.00 0.00 0.00 5.01
975 1003 5.388944 CAGTAAGAGTACGTACTGGACAAC 58.611 45.833 31.91 20.00 46.94 3.32
1015 1051 5.648178 ACTCATGCATGCATTCACTTAAA 57.352 34.783 30.32 7.80 33.90 1.52
1040 1076 4.883026 CGACCGATCGTTCCACTT 57.117 55.556 15.09 0.00 43.66 3.16
1054 1090 4.091424 GCAATGTTGTTATGCTTCTCGAC 58.909 43.478 0.00 0.00 37.12 4.20
1114 1151 2.094700 CCACCGTCGAAGAAGAAGATGA 60.095 50.000 0.00 0.00 38.59 2.92
1136 1173 2.100216 CGCCGCCACAATTAGCAC 59.900 61.111 0.00 0.00 0.00 4.40
1159 1196 1.220529 CATGGGCATGCAGTACTACG 58.779 55.000 21.36 0.00 31.39 3.51
1168 1205 0.610232 GTAGATCCCCATGGGCATGC 60.610 60.000 26.87 9.90 43.94 4.06
1182 1219 1.447643 GCCGCCTGGACATGTAGAT 59.552 57.895 0.00 0.00 37.49 1.98
1384 1427 1.144936 CTGGAAGCCGAGATGGTCC 59.855 63.158 0.00 0.00 41.21 4.46
1816 1859 3.872728 TCGTCGTCGATCCTGGCG 61.873 66.667 0.00 0.00 41.35 5.69
1836 1879 1.141881 CCTCGTCCTTGGTCATCGG 59.858 63.158 0.00 0.00 0.00 4.18
1952 1998 0.389948 CCGCTCCTACTTTTCGTGCT 60.390 55.000 0.00 0.00 0.00 4.40
1955 2001 0.037605 CACCCGCTCCTACTTTTCGT 60.038 55.000 0.00 0.00 0.00 3.85
1962 2008 2.813908 CGTTGCACCCGCTCCTAC 60.814 66.667 0.00 0.00 39.64 3.18
1963 2009 2.992689 TCGTTGCACCCGCTCCTA 60.993 61.111 0.17 0.00 39.64 2.94
1964 2010 4.681978 GTCGTTGCACCCGCTCCT 62.682 66.667 0.17 0.00 39.64 3.69
1965 2011 4.980805 TGTCGTTGCACCCGCTCC 62.981 66.667 0.17 0.00 39.64 4.70
2167 2213 4.323477 TGGCCGTTGTTCCTCCCG 62.323 66.667 0.00 0.00 0.00 5.14
2260 2306 4.473520 ATCCTGTTGGCGGCCTCG 62.474 66.667 21.46 5.57 39.81 4.63
2266 2312 0.179048 TGGCTATGATCCTGTTGGCG 60.179 55.000 0.00 0.00 0.00 5.69
2312 2358 3.152400 GATGGGGTAGGCGTCGGT 61.152 66.667 0.00 0.00 0.00 4.69
2439 2485 4.010349 CAGTACCCAGTCCCTTGATTTTC 58.990 47.826 0.00 0.00 0.00 2.29
2440 2486 3.814316 GCAGTACCCAGTCCCTTGATTTT 60.814 47.826 0.00 0.00 0.00 1.82
2441 2487 2.290960 GCAGTACCCAGTCCCTTGATTT 60.291 50.000 0.00 0.00 0.00 2.17
2442 2488 1.282157 GCAGTACCCAGTCCCTTGATT 59.718 52.381 0.00 0.00 0.00 2.57
2443 2489 0.912486 GCAGTACCCAGTCCCTTGAT 59.088 55.000 0.00 0.00 0.00 2.57
2444 2490 0.178903 AGCAGTACCCAGTCCCTTGA 60.179 55.000 0.00 0.00 0.00 3.02
2445 2491 1.482593 CTAGCAGTACCCAGTCCCTTG 59.517 57.143 0.00 0.00 0.00 3.61
2446 2492 1.622725 CCTAGCAGTACCCAGTCCCTT 60.623 57.143 0.00 0.00 0.00 3.95
2447 2493 0.032017 CCTAGCAGTACCCAGTCCCT 60.032 60.000 0.00 0.00 0.00 4.20
2448 2494 1.687297 GCCTAGCAGTACCCAGTCCC 61.687 65.000 0.00 0.00 0.00 4.46
2449 2495 1.823976 GCCTAGCAGTACCCAGTCC 59.176 63.158 0.00 0.00 0.00 3.85
2450 2496 1.321074 ACGCCTAGCAGTACCCAGTC 61.321 60.000 0.00 0.00 0.00 3.51
2451 2497 1.305046 ACGCCTAGCAGTACCCAGT 60.305 57.895 0.00 0.00 0.00 4.00
2452 2498 1.141881 CACGCCTAGCAGTACCCAG 59.858 63.158 0.00 0.00 0.00 4.45
2453 2499 3.014085 GCACGCCTAGCAGTACCCA 62.014 63.158 0.00 0.00 0.00 4.51
2454 2500 2.202892 GCACGCCTAGCAGTACCC 60.203 66.667 0.00 0.00 0.00 3.69
2459 2505 3.490759 CCAACGCACGCCTAGCAG 61.491 66.667 0.00 0.00 0.00 4.24
2623 2670 9.006215 GTATTTATCATGTTTTAGTTCGTTGGC 57.994 33.333 0.00 0.00 0.00 4.52
2663 2710 7.930513 AAAGCAAGAAGTTTACTAAATGCAC 57.069 32.000 12.92 0.00 33.15 4.57
2684 2731 8.969121 TGAGAATTGTTGCATACATACAAAAG 57.031 30.769 5.09 0.00 36.44 2.27
2689 2736 9.229784 CTGAATTGAGAATTGTTGCATACATAC 57.770 33.333 0.00 0.00 36.44 2.39
2704 2751 4.652421 TTTTGCTGCACTGAATTGAGAA 57.348 36.364 0.00 0.00 0.00 2.87
2738 2785 8.638685 AATTTTGATGTTGCATAGTTCATAGC 57.361 30.769 0.00 0.00 0.00 2.97
2769 2816 6.091437 AGTACAGAACTTCGTACTATTGCAC 58.909 40.000 17.48 0.00 44.96 4.57
2777 2824 8.955061 TGTTGTATAAGTACAGAACTTCGTAC 57.045 34.615 12.32 12.32 45.64 3.67
2806 2853 7.206789 TCCCCTATGAGTCAACATGATTTTA 57.793 36.000 0.00 0.00 0.00 1.52
2824 2871 3.492337 AGTTGCGAATGTTTTTCCCCTA 58.508 40.909 0.00 0.00 0.00 3.53
2826 2873 2.812358 AGTTGCGAATGTTTTTCCCC 57.188 45.000 0.00 0.00 0.00 4.81
2945 3084 4.892433 AGTTTCTTCTGGAGACATGTGAG 58.108 43.478 1.15 0.00 41.51 3.51
2946 3085 4.963318 AGTTTCTTCTGGAGACATGTGA 57.037 40.909 1.15 0.00 41.51 3.58
2948 3087 5.998363 GGTTTAGTTTCTTCTGGAGACATGT 59.002 40.000 0.00 0.00 41.51 3.21
2949 3088 5.412904 GGGTTTAGTTTCTTCTGGAGACATG 59.587 44.000 0.00 0.00 41.51 3.21
2950 3089 5.561679 GGGTTTAGTTTCTTCTGGAGACAT 58.438 41.667 0.00 0.00 41.51 3.06
2951 3090 4.502604 CGGGTTTAGTTTCTTCTGGAGACA 60.503 45.833 0.00 0.00 33.02 3.41
2952 3091 3.995048 CGGGTTTAGTTTCTTCTGGAGAC 59.005 47.826 0.00 0.00 33.02 3.36
2953 3092 3.899360 TCGGGTTTAGTTTCTTCTGGAGA 59.101 43.478 0.00 0.00 0.00 3.71
2954 3093 3.995048 GTCGGGTTTAGTTTCTTCTGGAG 59.005 47.826 0.00 0.00 0.00 3.86
2955 3094 3.244318 GGTCGGGTTTAGTTTCTTCTGGA 60.244 47.826 0.00 0.00 0.00 3.86
2956 3095 3.072211 GGTCGGGTTTAGTTTCTTCTGG 58.928 50.000 0.00 0.00 0.00 3.86
2957 3096 3.072211 GGGTCGGGTTTAGTTTCTTCTG 58.928 50.000 0.00 0.00 0.00 3.02
2958 3097 2.039480 GGGGTCGGGTTTAGTTTCTTCT 59.961 50.000 0.00 0.00 0.00 2.85
2959 3098 2.039480 AGGGGTCGGGTTTAGTTTCTTC 59.961 50.000 0.00 0.00 0.00 2.87
2965 3104 0.969409 CGAGAGGGGTCGGGTTTAGT 60.969 60.000 0.00 0.00 36.26 2.24
2973 3112 1.519455 GACAATGCGAGAGGGGTCG 60.519 63.158 0.00 0.00 43.08 4.79
2974 3113 0.250513 AAGACAATGCGAGAGGGGTC 59.749 55.000 0.00 0.00 0.00 4.46
3027 3166 6.154534 ACCTAGATGTACATACAACAAGCTGA 59.845 38.462 8.71 0.00 39.99 4.26
3028 3167 6.341316 ACCTAGATGTACATACAACAAGCTG 58.659 40.000 8.71 0.00 39.99 4.24
3050 3189 2.644676 GAAGAATGGGCTCCAAGTACC 58.355 52.381 0.00 0.00 36.95 3.34
3097 3236 6.761242 TCATAGTTTTCCCATACTCATTGTCG 59.239 38.462 0.00 0.00 0.00 4.35
3101 3240 6.986817 CGTCTCATAGTTTTCCCATACTCATT 59.013 38.462 0.00 0.00 0.00 2.57
3110 3249 8.815189 GTTTTAGTATCGTCTCATAGTTTTCCC 58.185 37.037 0.00 0.00 0.00 3.97
3136 3275 1.068741 GCACCCTAACGAGACTATGGG 59.931 57.143 0.00 0.00 40.37 4.00
3139 3278 1.409427 GCTGCACCCTAACGAGACTAT 59.591 52.381 0.00 0.00 0.00 2.12
3156 3295 0.798776 GAACTTCCGGTCATGTGCTG 59.201 55.000 0.00 0.00 0.00 4.41
3192 3331 3.181454 ACCGAGCCTAGGTAAATTCCATG 60.181 47.826 11.31 0.00 40.80 3.66
3194 3333 2.433239 GACCGAGCCTAGGTAAATTCCA 59.567 50.000 11.31 0.00 43.01 3.53
3220 3359 4.466255 AGTAGGGTATTACCTCCGTGAT 57.534 45.455 12.54 0.00 42.09 3.06
3242 3381 6.814644 CCAATATCAATCAAAGCAAAAGCAGA 59.185 34.615 0.00 0.00 0.00 4.26
3249 3388 7.387397 GTGTTTTCCCAATATCAATCAAAGCAA 59.613 33.333 0.00 0.00 0.00 3.91
3274 3413 1.777878 TGTAACCCCCTCACACAATGT 59.222 47.619 0.00 0.00 0.00 2.71
3275 3414 2.577606 TGTAACCCCCTCACACAATG 57.422 50.000 0.00 0.00 0.00 2.82
3276 3415 3.825908 ATTGTAACCCCCTCACACAAT 57.174 42.857 0.00 0.00 35.54 2.71
3325 3465 2.369860 TGGGATCATCTGACATGTAGCC 59.630 50.000 0.00 0.00 0.00 3.93
3328 3468 6.998074 GGTAATTTGGGATCATCTGACATGTA 59.002 38.462 0.00 0.00 0.00 2.29
3329 3469 5.829924 GGTAATTTGGGATCATCTGACATGT 59.170 40.000 0.00 0.00 0.00 3.21
3330 3470 5.242393 GGGTAATTTGGGATCATCTGACATG 59.758 44.000 0.00 0.00 0.00 3.21
3331 3471 5.135020 AGGGTAATTTGGGATCATCTGACAT 59.865 40.000 0.00 0.00 0.00 3.06
3332 3472 4.478317 AGGGTAATTTGGGATCATCTGACA 59.522 41.667 0.00 0.00 0.00 3.58
3333 3473 5.053978 AGGGTAATTTGGGATCATCTGAC 57.946 43.478 0.00 0.00 0.00 3.51
3334 3474 5.732331 AAGGGTAATTTGGGATCATCTGA 57.268 39.130 0.00 0.00 0.00 3.27
3371 3511 2.618709 CTCCCTCACACAAGGTGTTTTC 59.381 50.000 0.00 0.00 45.08 2.29
3405 3545 2.290916 TCGTCTCGATAGCAACATCTCC 59.709 50.000 0.00 0.00 0.00 3.71
3406 3546 3.610786 TCGTCTCGATAGCAACATCTC 57.389 47.619 0.00 0.00 0.00 2.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.