Multiple sequence alignment - TraesCS3A01G086900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G086900 chr3A 100.000 4969 0 0 1 4969 56219816 56214848 0.000000e+00 9177.0
1 TraesCS3A01G086900 chr3A 88.921 343 31 3 2179 2518 302927724 302928062 2.770000e-112 416.0
2 TraesCS3A01G086900 chr3A 95.968 124 5 0 4118 4241 562901721 562901598 8.430000e-48 202.0
3 TraesCS3A01G086900 chr3B 89.836 3168 174 60 1 3060 68903342 68900215 0.000000e+00 3930.0
4 TraesCS3A01G086900 chr3B 90.305 1083 72 13 3059 4119 68900050 68898979 0.000000e+00 1387.0
5 TraesCS3A01G086900 chr3B 89.318 337 28 4 2186 2518 803142528 803142196 2.770000e-112 416.0
6 TraesCS3A01G086900 chr3B 85.920 348 27 5 4118 4443 201560350 201560003 7.910000e-93 351.0
7 TraesCS3A01G086900 chr3B 88.304 171 11 2 2521 2683 536902410 536902241 3.920000e-46 196.0
8 TraesCS3A01G086900 chr3B 85.965 171 16 4 4799 4968 68898811 68898648 5.110000e-40 176.0
9 TraesCS3A01G086900 chr3D 91.409 1746 99 27 955 2672 43998057 43996335 0.000000e+00 2346.0
10 TraesCS3A01G086900 chr3D 85.364 1510 126 48 2686 4121 43996206 43994718 0.000000e+00 1476.0
11 TraesCS3A01G086900 chr3D 88.889 288 17 3 4121 4394 213392852 213392566 1.710000e-89 340.0
12 TraesCS3A01G086900 chr3D 81.884 138 11 8 1 137 44000349 44000225 2.450000e-18 104.0
13 TraesCS3A01G086900 chr3D 91.837 49 3 1 418 465 170794411 170794363 3.210000e-07 67.6
14 TraesCS3A01G086900 chr2A 85.511 704 75 9 2368 3045 257093497 257092795 0.000000e+00 710.0
15 TraesCS3A01G086900 chr2A 89.504 343 30 2 2179 2518 120507540 120507879 3.550000e-116 429.0
16 TraesCS3A01G086900 chr2A 89.091 165 9 2 2521 2677 256201034 256201197 3.920000e-46 196.0
17 TraesCS3A01G086900 chr2A 82.166 157 23 5 4442 4596 58863886 58863733 4.040000e-26 130.0
18 TraesCS3A01G086900 chr2A 82.550 149 21 5 4450 4596 141897102 141897247 5.220000e-25 126.0
19 TraesCS3A01G086900 chr2A 87.500 88 5 5 4448 4530 234290953 234290867 4.090000e-16 97.1
20 TraesCS3A01G086900 chr2D 91.008 367 29 4 2683 3045 207478817 207479183 4.470000e-135 492.0
21 TraesCS3A01G086900 chr2D 92.212 321 18 5 2368 2685 207478389 207478705 9.810000e-122 448.0
22 TraesCS3A01G086900 chr2D 87.467 383 32 9 3051 3421 207479241 207479619 1.280000e-115 427.0
23 TraesCS3A01G086900 chr2D 86.040 351 23 5 4118 4444 33934240 33934588 2.200000e-93 353.0
24 TraesCS3A01G086900 chr2D 86.040 351 23 5 4118 4444 630270717 630271065 2.200000e-93 353.0
25 TraesCS3A01G086900 chr2D 85.345 348 25 5 4121 4444 272801231 272800886 2.220000e-88 337.0
26 TraesCS3A01G086900 chr2D 89.219 269 15 5 4118 4372 630269652 630269920 1.730000e-84 324.0
27 TraesCS3A01G086900 chr2D 82.237 152 18 8 4443 4594 555226633 555226775 6.760000e-24 122.0
28 TraesCS3A01G086900 chr2D 79.221 154 15 10 4446 4597 110402163 110402301 1.900000e-14 91.6
29 TraesCS3A01G086900 chr2D 86.420 81 4 5 4630 4708 33934610 33934685 1.150000e-11 82.4
30 TraesCS3A01G086900 chr2D 86.420 81 3 6 4630 4708 272800864 272800790 1.150000e-11 82.4
31 TraesCS3A01G086900 chr2D 86.420 81 4 5 4630 4708 630271087 630271162 1.150000e-11 82.4
32 TraesCS3A01G086900 chr4A 90.120 334 26 3 2188 2518 650160078 650159749 1.280000e-115 427.0
33 TraesCS3A01G086900 chr2B 89.213 343 31 2 2179 2518 58919840 58920179 1.650000e-114 424.0
34 TraesCS3A01G086900 chr2B 91.549 142 11 1 2542 2683 150350143 150350003 1.410000e-45 195.0
35 TraesCS3A01G086900 chr1A 89.645 338 25 3 2182 2518 516719721 516719393 5.950000e-114 422.0
36 TraesCS3A01G086900 chr1A 86.184 152 18 3 4446 4596 12818004 12817855 1.430000e-35 161.0
37 TraesCS3A01G086900 chr1B 88.921 343 31 3 2179 2518 543843177 543843515 2.770000e-112 416.0
38 TraesCS3A01G086900 chr1B 85.960 349 27 8 4118 4444 633728440 633728092 2.200000e-93 353.0
39 TraesCS3A01G086900 chr1B 89.524 105 8 2 4446 4550 686882564 686882463 4.040000e-26 130.0
40 TraesCS3A01G086900 chr5B 86.533 349 25 5 4118 4444 429032848 429033196 1.020000e-96 364.0
41 TraesCS3A01G086900 chr5B 85.470 351 25 9 4118 4444 432877148 432877496 4.760000e-90 342.0
42 TraesCS3A01G086900 chr5B 95.833 120 5 0 4118 4237 367208187 367208306 1.410000e-45 195.0
43 TraesCS3A01G086900 chr5B 82.895 152 18 7 4446 4597 546320517 546320374 4.040000e-26 130.0
44 TraesCS3A01G086900 chr5B 85.263 95 10 4 4618 4708 429033193 429033287 1.470000e-15 95.3
45 TraesCS3A01G086900 chr5D 86.416 346 24 9 4121 4444 432292292 432291948 1.700000e-94 357.0
46 TraesCS3A01G086900 chr5D 94.400 125 7 0 4118 4242 317385324 317385448 5.080000e-45 193.0
47 TraesCS3A01G086900 chr5D 89.157 83 5 4 4630 4708 432291926 432291844 3.170000e-17 100.0
48 TraesCS3A01G086900 chr5A 85.714 350 24 5 4118 4443 442270803 442271150 3.680000e-91 346.0
49 TraesCS3A01G086900 chr5A 88.304 171 11 2 2521 2683 139482605 139482436 3.920000e-46 196.0
50 TraesCS3A01G086900 chrUn 85.345 348 25 5 4121 4444 327662877 327662532 2.220000e-88 337.0
51 TraesCS3A01G086900 chrUn 86.420 81 3 6 4630 4708 327662510 327662436 1.150000e-11 82.4
52 TraesCS3A01G086900 chr4D 86.574 216 17 3 4239 4444 220263087 220262874 1.390000e-55 228.0
53 TraesCS3A01G086900 chr4D 87.500 112 12 2 4446 4557 303051990 303051881 1.450000e-25 128.0
54 TraesCS3A01G086900 chr1D 95.868 121 5 0 4121 4241 459899269 459899149 3.920000e-46 196.0
55 TraesCS3A01G086900 chr4B 75.088 285 55 9 214 492 214930581 214930307 8.740000e-23 119.0
56 TraesCS3A01G086900 chr7A 88.660 97 7 3 4616 4708 650019326 650019230 1.130000e-21 115.0
57 TraesCS3A01G086900 chr7A 88.298 94 6 5 4619 4708 352676679 352676587 1.890000e-19 108.0
58 TraesCS3A01G086900 chr7A 77.551 147 24 5 4450 4596 43349169 43349306 4.120000e-11 80.5
59 TraesCS3A01G086900 chr7A 77.551 147 24 5 4450 4596 43382681 43382818 4.120000e-11 80.5
60 TraesCS3A01G086900 chr6B 88.372 86 6 4 4618 4699 711237062 711237147 3.170000e-17 100.0
61 TraesCS3A01G086900 chr7B 76.515 132 19 8 4469 4595 158551211 158551087 1.490000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G086900 chr3A 56214848 56219816 4968 True 9177.000000 9177 100.000000 1 4969 1 chr3A.!!$R1 4968
1 TraesCS3A01G086900 chr3B 68898648 68903342 4694 True 1831.000000 3930 88.702000 1 4968 3 chr3B.!!$R4 4967
2 TraesCS3A01G086900 chr3D 43994718 44000349 5631 True 1308.666667 2346 86.219000 1 4121 3 chr3D.!!$R3 4120
3 TraesCS3A01G086900 chr2A 257092795 257093497 702 True 710.000000 710 85.511000 2368 3045 1 chr2A.!!$R3 677
4 TraesCS3A01G086900 chr2D 207478389 207479619 1230 False 455.666667 492 90.229000 2368 3421 3 chr2D.!!$F4 1053
5 TraesCS3A01G086900 chr2D 630269652 630271162 1510 False 253.133333 353 87.226333 4118 4708 3 chr2D.!!$F5 590

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
83 84 0.709467 TGTCGCGTACGCAATGTTAC 59.291 50.000 36.44 23.07 42.06 2.50 F
85 86 0.728803 TCGCGTACGCAATGTTACGT 60.729 50.000 36.44 0.00 45.85 3.57 F
1036 2933 0.392595 GGGTTAGGGTTTGCCTCTCG 60.393 60.000 0.00 0.00 34.45 4.04 F
1904 3831 0.606604 TGGTTGCTAGGAAGACCGAC 59.393 55.000 0.00 0.00 41.83 4.79 F
2142 4070 0.318955 GCACCGAGTTGCAAAATGCT 60.319 50.000 0.00 0.00 45.31 3.79 F
2249 4177 1.303317 CCTTAGCAACCGCCAACCT 60.303 57.895 0.00 0.00 39.83 3.50 F
3559 5855 1.698506 CCAAGTTTGGGGCTGTGTTA 58.301 50.000 2.87 0.00 44.70 2.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1036 2933 1.745489 GCAACCCACCTCACGATCC 60.745 63.158 0.00 0.00 0.00 3.36 R
1904 3831 2.383601 AATAACCCCTGCCCTCCGG 61.384 63.158 0.00 0.00 0.00 5.14 R
2109 4037 0.326927 CGGTGCCTAAGAGGGGAAAA 59.673 55.000 0.00 0.00 35.37 2.29 R
3559 5855 0.380733 TCTCGAATATCAGCACGCGT 59.619 50.000 5.58 5.58 0.00 6.01 R
3706 6002 0.886563 TTCCCTCGTCGAAGAAGGTC 59.113 55.000 14.55 0.00 39.69 3.85 R
3884 6183 1.344114 GGCCAACATTCACCAACATGT 59.656 47.619 0.00 0.00 35.00 3.21 R
4804 8208 0.320374 AGAACCGACCGAGCAATTGA 59.680 50.000 10.34 0.00 0.00 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 5.178061 TCAATCTGTAATCGATTGCAGTGT 58.822 37.500 38.14 29.45 46.34 3.55
76 77 2.731721 CTGGTTGTCGCGTACGCA 60.732 61.111 36.44 22.20 42.06 5.24
77 78 2.279318 TGGTTGTCGCGTACGCAA 60.279 55.556 36.44 20.19 42.06 4.85
83 84 0.709467 TGTCGCGTACGCAATGTTAC 59.291 50.000 36.44 23.07 42.06 2.50
85 86 0.728803 TCGCGTACGCAATGTTACGT 60.729 50.000 36.44 0.00 45.85 3.57
188 209 8.345565 GGACCTCAATATTATGTTCATGTTCAC 58.654 37.037 0.00 0.00 0.00 3.18
211 232 4.098960 CGAGGTCACCCTAGCAAACTATTA 59.901 45.833 0.00 0.00 42.86 0.98
217 238 5.364446 TCACCCTAGCAAACTATTATTCCGA 59.636 40.000 0.00 0.00 0.00 4.55
219 240 4.691216 CCCTAGCAAACTATTATTCCGAGC 59.309 45.833 0.00 0.00 0.00 5.03
240 859 1.003759 GAATGCTGCAATCTGAGAGCG 60.004 52.381 6.36 0.00 33.97 5.03
252 2071 6.457392 GCAATCTGAGAGCGTATCATCAAAAA 60.457 38.462 0.00 0.00 0.00 1.94
284 2103 5.049405 CCAATAAACGCTCAGAGAGTTGTTT 60.049 40.000 19.08 16.86 37.25 2.83
301 2120 8.186821 AGAGTTGTTTTGCTGAAATAGATATGC 58.813 33.333 0.00 0.00 0.00 3.14
320 2139 8.562892 AGATATGCTTGTCATGCTATTTTGTAC 58.437 33.333 11.58 0.00 36.63 2.90
371 2190 4.493547 TGCCACACTAGCAAAAATATTGC 58.506 39.130 5.06 5.06 45.22 3.56
372 2191 6.354300 TTGCCACACTAGCAAAAATATTGCG 61.354 40.000 7.44 0.00 46.71 4.85
403 2222 3.123959 GCCATGCTGCAACAAAGTAATTG 59.876 43.478 6.36 0.00 44.95 2.32
423 2242 3.761897 TGTCATGGGTTTTCGAGGATTT 58.238 40.909 0.00 0.00 0.00 2.17
424 2243 4.148838 TGTCATGGGTTTTCGAGGATTTT 58.851 39.130 0.00 0.00 0.00 1.82
426 2245 5.161358 GTCATGGGTTTTCGAGGATTTTTC 58.839 41.667 0.00 0.00 0.00 2.29
427 2246 4.830046 TCATGGGTTTTCGAGGATTTTTCA 59.170 37.500 0.00 0.00 0.00 2.69
428 2247 5.480073 TCATGGGTTTTCGAGGATTTTTCAT 59.520 36.000 0.00 0.00 0.00 2.57
429 2248 5.132897 TGGGTTTTCGAGGATTTTTCATG 57.867 39.130 0.00 0.00 0.00 3.07
430 2249 4.830046 TGGGTTTTCGAGGATTTTTCATGA 59.170 37.500 0.00 0.00 0.00 3.07
431 2250 5.480073 TGGGTTTTCGAGGATTTTTCATGAT 59.520 36.000 0.00 0.00 0.00 2.45
432 2251 5.807011 GGGTTTTCGAGGATTTTTCATGATG 59.193 40.000 0.00 0.00 0.00 3.07
433 2252 5.289434 GGTTTTCGAGGATTTTTCATGATGC 59.711 40.000 0.00 0.00 0.00 3.91
461 2280 4.949856 TGGAGAATTGCTAGCCTAAAAAGG 59.050 41.667 13.29 0.00 0.00 3.11
496 2315 7.408756 TTTATTCAGAAATTGCCATGCTACT 57.591 32.000 0.00 0.00 0.00 2.57
498 2317 8.696043 TTATTCAGAAATTGCCATGCTACTAT 57.304 30.769 0.00 0.00 0.00 2.12
499 2318 9.791801 TTATTCAGAAATTGCCATGCTACTATA 57.208 29.630 0.00 0.00 0.00 1.31
500 2319 8.874744 ATTCAGAAATTGCCATGCTACTATAT 57.125 30.769 0.00 0.00 0.00 0.86
501 2320 8.696043 TTCAGAAATTGCCATGCTACTATATT 57.304 30.769 0.00 0.00 0.00 1.28
502 2321 8.696043 TCAGAAATTGCCATGCTACTATATTT 57.304 30.769 0.00 0.00 0.00 1.40
503 2322 9.135189 TCAGAAATTGCCATGCTACTATATTTT 57.865 29.630 0.00 0.00 0.00 1.82
504 2323 9.754382 CAGAAATTGCCATGCTACTATATTTTT 57.246 29.630 0.00 0.00 0.00 1.94
524 2343 4.797693 TTTTTGTCATGCTTACGTCGAA 57.202 36.364 0.00 0.00 0.00 3.71
527 2346 3.503827 TGTCATGCTTACGTCGAAGAT 57.496 42.857 5.05 0.00 40.67 2.40
530 2349 5.588240 TGTCATGCTTACGTCGAAGATAAT 58.412 37.500 5.05 0.00 40.67 1.28
544 2363 4.570772 CGAAGATAATCGGTGACAAATGGT 59.429 41.667 0.00 0.00 39.12 3.55
565 2384 9.777297 AATGGTCATGCTTTTAAAAACATAACT 57.223 25.926 14.73 0.00 0.00 2.24
617 2436 3.548587 CACGTGTCTTGCTTTGAGATTG 58.451 45.455 7.58 0.00 0.00 2.67
623 2444 4.036734 TGTCTTGCTTTGAGATTGGTGAAC 59.963 41.667 0.00 0.00 0.00 3.18
644 2465 2.068519 GTGTCACATCACATTCGCTCA 58.931 47.619 0.00 0.00 38.12 4.26
645 2466 2.480037 GTGTCACATCACATTCGCTCAA 59.520 45.455 0.00 0.00 38.12 3.02
673 2494 3.553096 CGCCTCTAAGCTAATGTCGGATT 60.553 47.826 0.00 0.00 0.00 3.01
684 2505 8.500753 AGCTAATGTCGGATTGTTAACATTTA 57.499 30.769 9.56 0.00 41.31 1.40
685 2506 8.612619 AGCTAATGTCGGATTGTTAACATTTAG 58.387 33.333 9.56 4.37 41.31 1.85
728 2549 9.715123 GGTTCTTTTGGTAAATTGATTGTTTTG 57.285 29.630 0.00 0.00 0.00 2.44
734 2555 8.885494 TTGGTAAATTGATTGTTTTGAGGAAG 57.115 30.769 0.00 0.00 0.00 3.46
881 2718 6.986904 AAGGGCTTAATAAGAGAGAAAACG 57.013 37.500 3.88 0.00 0.00 3.60
883 2720 6.473758 AGGGCTTAATAAGAGAGAAAACGTT 58.526 36.000 3.88 0.00 0.00 3.99
901 2781 2.616376 CGTTGATAATGGCCCAATCGAA 59.384 45.455 0.00 0.00 0.00 3.71
907 2787 2.044946 GGCCCAATCGAACAGCCT 60.045 61.111 10.79 0.00 40.57 4.58
946 2843 2.477176 CGGCTGTCTCCCTCGAGAG 61.477 68.421 15.71 0.00 45.93 3.20
948 2845 1.381165 GGCTGTCTCCCTCGAGAGTC 61.381 65.000 15.71 0.00 45.93 3.36
949 2846 1.711060 GCTGTCTCCCTCGAGAGTCG 61.711 65.000 15.71 0.00 45.93 4.18
1036 2933 0.392595 GGGTTAGGGTTTGCCTCTCG 60.393 60.000 0.00 0.00 34.45 4.04
1074 2975 2.237392 GCTACATCCACCTTGTTCCTCT 59.763 50.000 0.00 0.00 0.00 3.69
1113 3019 2.613474 CCACCCGACGACTTAATTTCCA 60.613 50.000 0.00 0.00 0.00 3.53
1157 3063 1.817099 GAAGATGCTGGGCGGACTG 60.817 63.158 0.00 0.00 0.00 3.51
1772 3699 1.938596 AGGCTCCTCCTCCTCTGGA 60.939 63.158 0.00 0.00 43.20 3.86
1904 3831 0.606604 TGGTTGCTAGGAAGACCGAC 59.393 55.000 0.00 0.00 41.83 4.79
1991 3918 0.838122 AGCCCACCAGAGTAGTGCTT 60.838 55.000 0.00 0.00 33.75 3.91
2054 3982 8.380644 CGTAATAAGAGTACCACATTTTGTCAG 58.619 37.037 0.00 0.00 0.00 3.51
2069 3997 3.096489 TGTCAGCATTTTCAGGTTTGC 57.904 42.857 0.00 0.00 35.34 3.68
2075 4003 4.060205 AGCATTTTCAGGTTTGCATGAAC 58.940 39.130 0.00 0.00 43.81 3.18
2098 4026 5.221925 ACAAGGATGAAGTAGTGGTTCATGT 60.222 40.000 3.13 0.00 43.26 3.21
2104 4032 7.201644 GGATGAAGTAGTGGTTCATGTGTTATG 60.202 40.741 3.13 0.00 43.26 1.90
2109 4037 2.819608 GTGGTTCATGTGTTATGCCTGT 59.180 45.455 0.00 0.00 0.00 4.00
2127 4055 1.074889 TGTTTTCCCCTCTTAGGCACC 59.925 52.381 0.00 0.00 32.73 5.01
2142 4070 0.318955 GCACCGAGTTGCAAAATGCT 60.319 50.000 0.00 0.00 45.31 3.79
2206 4134 6.777526 ATGCGAATATCTAAGCTGAAGTTC 57.222 37.500 0.00 0.00 0.00 3.01
2216 4144 1.670811 AGCTGAAGTTCGTTGGTTGTG 59.329 47.619 0.00 0.00 0.00 3.33
2249 4177 1.303317 CCTTAGCAACCGCCAACCT 60.303 57.895 0.00 0.00 39.83 3.50
2277 4205 6.816134 TCTGCTGCTGTTGTTGATTTATTA 57.184 33.333 0.00 0.00 0.00 0.98
2278 4206 7.395190 TCTGCTGCTGTTGTTGATTTATTAT 57.605 32.000 0.00 0.00 0.00 1.28
2279 4207 7.475015 TCTGCTGCTGTTGTTGATTTATTATC 58.525 34.615 0.00 0.00 0.00 1.75
2310 4238 4.682787 TGGTTTCTCATACATAGACAGCG 58.317 43.478 0.00 0.00 0.00 5.18
2311 4239 4.051922 GGTTTCTCATACATAGACAGCGG 58.948 47.826 0.00 0.00 0.00 5.52
2357 4286 8.840321 TCCAATTCTGAGCATATAGTTTTTAGC 58.160 33.333 0.00 0.00 0.00 3.09
2405 4341 6.841601 AGCCTAATACCATCTAGCAAAATGA 58.158 36.000 0.00 0.00 0.00 2.57
2407 4343 7.779798 AGCCTAATACCATCTAGCAAAATGAAA 59.220 33.333 0.00 0.00 0.00 2.69
2415 4351 9.686683 ACCATCTAGCAAAATGAAATTAGTAGT 57.313 29.630 0.00 0.00 33.67 2.73
2471 4407 8.092521 ACTGATATGTGATAATTTGCAGTAGC 57.907 34.615 0.00 0.00 42.57 3.58
2504 4440 7.837689 AGTAAACACATAGACAGGTATCAGGTA 59.162 37.037 0.00 0.00 0.00 3.08
2555 4491 2.884639 GTTATGGTTGAAGTGCACAGGT 59.115 45.455 21.04 3.13 0.00 4.00
2775 4842 6.953101 TCCAAATCTAACCACTGTATAGCAA 58.047 36.000 0.00 0.00 0.00 3.91
2787 4856 6.018425 CCACTGTATAGCAAAGACAGCTTATG 60.018 42.308 12.24 5.06 43.60 1.90
2792 4861 2.426024 AGCAAAGACAGCTTATGCATGG 59.574 45.455 10.16 3.17 39.87 3.66
2816 4885 7.616150 TGGTAATTTTGGTTAATAGGCAGCTAA 59.384 33.333 0.00 0.00 0.00 3.09
2831 4900 7.150783 AGGCAGCTAAGAATTTTAGTCTTTG 57.849 36.000 0.00 0.00 36.69 2.77
2883 4953 6.934561 GCTGGTTGCTTTTTAGTTCAATAG 57.065 37.500 0.00 0.00 38.95 1.73
2937 5008 5.551760 AAGAAAGTTCAGCGTATGATTGG 57.448 39.130 0.00 0.00 37.89 3.16
2942 5013 4.184629 AGTTCAGCGTATGATTGGTTCTC 58.815 43.478 0.00 0.00 37.89 2.87
3086 5357 4.090761 TGGGCATAGAACCTGATGAATC 57.909 45.455 0.00 0.00 0.00 2.52
3090 5361 5.128919 GGCATAGAACCTGATGAATCTGTT 58.871 41.667 0.00 0.00 0.00 3.16
3119 5390 3.524541 GGTACTACAATGGTGTTACCCG 58.475 50.000 0.00 0.00 36.01 5.28
3150 5429 4.216257 CCACTGAGGGTTGTGATACAAAAG 59.784 45.833 0.00 0.00 40.15 2.27
3216 5495 3.882888 TCGGCTTTGTGAGTTTTCTGATT 59.117 39.130 0.00 0.00 0.00 2.57
3251 5536 9.513906 TTTTATCTGTCAAGTGGTATTTGATCA 57.486 29.630 0.00 0.00 36.96 2.92
3434 5727 7.547227 ACATGATTTATTTCTGGTTAAGGTGC 58.453 34.615 0.00 0.00 0.00 5.01
3440 5733 2.450609 TCTGGTTAAGGTGCGAGTTC 57.549 50.000 0.00 0.00 0.00 3.01
3464 5760 5.778161 TGTCTAGTGCAACATGTTAATCG 57.222 39.130 11.53 0.00 41.43 3.34
3559 5855 1.698506 CCAAGTTTGGGGCTGTGTTA 58.301 50.000 2.87 0.00 44.70 2.41
3824 6123 1.802337 CTGGACGTTGGTGTCTCGGA 61.802 60.000 0.00 0.00 38.91 4.55
3851 6150 5.011090 ACTTAATCTAGAGCATGAACGCA 57.989 39.130 0.00 0.00 0.00 5.24
3854 6153 2.284263 TCTAGAGCATGAACGCAGTG 57.716 50.000 0.00 0.00 45.00 3.66
3858 6157 1.949525 AGAGCATGAACGCAGTGTTTT 59.050 42.857 0.00 0.00 45.00 2.43
3864 6163 4.317348 GCATGAACGCAGTGTTTTTCTTTC 60.317 41.667 0.00 0.00 45.00 2.62
3884 6183 6.887545 TCTTTCCTTTTGAGGACAGTTTACAA 59.112 34.615 8.11 0.00 37.14 2.41
3964 6269 2.158295 ACTTCTGGGTGTAGAGGTGAGT 60.158 50.000 0.00 0.00 35.90 3.41
3979 6285 1.718178 GTGAGTATCTGCATCGCATCG 59.282 52.381 0.00 0.00 38.13 3.84
3982 6288 1.734117 TATCTGCATCGCATCGCCG 60.734 57.895 0.00 0.00 38.13 6.46
3984 6290 3.993234 CTGCATCGCATCGCCGTC 61.993 66.667 0.00 0.00 38.13 4.79
4055 6368 7.961351 ACAAAATAAATTCTGTCACCCATTGA 58.039 30.769 0.00 0.00 0.00 2.57
4086 6399 2.925966 TTGATCCCTCAAGCCCAAAT 57.074 45.000 0.00 0.00 36.46 2.32
4097 6410 3.269381 TCAAGCCCAAATATCCACCTCTT 59.731 43.478 0.00 0.00 0.00 2.85
4103 6418 3.768757 CCAAATATCCACCTCTTTGGCAA 59.231 43.478 0.00 0.00 40.67 4.52
4104 6419 4.406649 CCAAATATCCACCTCTTTGGCAAT 59.593 41.667 0.00 0.00 40.67 3.56
4153 6468 7.122650 TGTGGATTGGAGATTTGAAAAGGATAC 59.877 37.037 0.00 0.00 0.00 2.24
4231 7611 3.815401 GGCAATTGTGTTGAGTACTGTCT 59.185 43.478 0.00 0.00 0.00 3.41
4237 7617 6.897259 TTGTGTTGAGTACTGTCTAACAAC 57.103 37.500 0.00 8.00 38.29 3.32
4245 7639 6.493802 TGAGTACTGTCTAACAACCTGAAGAT 59.506 38.462 0.00 0.00 0.00 2.40
4275 7669 6.976088 ACTTTCTACCTATGATCGTCATGAG 58.024 40.000 0.00 0.00 37.70 2.90
4278 7672 8.459911 TTTCTACCTATGATCGTCATGAGTTA 57.540 34.615 0.00 0.00 37.70 2.24
4279 7673 7.674471 TCTACCTATGATCGTCATGAGTTAG 57.326 40.000 0.00 6.68 37.70 2.34
4281 7675 6.320494 ACCTATGATCGTCATGAGTTAGAC 57.680 41.667 0.00 0.00 37.70 2.59
4298 7692 8.721478 TGAGTTAGACTACAATCAAATTGCTTC 58.279 33.333 0.00 0.00 43.98 3.86
4320 7714 3.543680 AGTCGGTTACCAATCTCCATG 57.456 47.619 1.13 0.00 0.00 3.66
4341 7735 6.492429 CCATGATGGGAGATTACACAATTCAT 59.508 38.462 2.79 0.00 32.67 2.57
4423 7827 8.825745 TGATTGCTAAACTTTTTGATTTTGTCC 58.174 29.630 0.00 0.00 0.00 4.02
4445 7849 9.638239 TGTCCTTTTGTTATGAAAATCTAATGC 57.362 29.630 0.00 0.00 0.00 3.56
4446 7850 9.638239 GTCCTTTTGTTATGAAAATCTAATGCA 57.362 29.630 0.00 0.00 0.00 3.96
4447 7851 9.859427 TCCTTTTGTTATGAAAATCTAATGCAG 57.141 29.630 0.00 0.00 0.00 4.41
4448 7852 9.643693 CCTTTTGTTATGAAAATCTAATGCAGT 57.356 29.630 0.00 0.00 0.00 4.40
4484 7888 8.557592 CACATCTATGATGTGCCATAAGTATT 57.442 34.615 22.29 0.00 42.19 1.89
4485 7889 8.448615 CACATCTATGATGTGCCATAAGTATTG 58.551 37.037 22.29 1.20 42.19 1.90
4486 7890 7.120285 ACATCTATGATGTGCCATAAGTATTGC 59.880 37.037 11.77 0.00 0.00 3.56
4487 7891 6.532826 TCTATGATGTGCCATAAGTATTGCA 58.467 36.000 0.00 0.00 32.69 4.08
4497 7901 8.322906 TGCCATAAGTATTGCACATATAAGTC 57.677 34.615 0.00 0.00 30.49 3.01
4498 7902 7.117667 TGCCATAAGTATTGCACATATAAGTCG 59.882 37.037 0.00 0.00 30.49 4.18
4499 7903 7.117812 GCCATAAGTATTGCACATATAAGTCGT 59.882 37.037 0.00 0.00 0.00 4.34
4500 7904 9.634163 CCATAAGTATTGCACATATAAGTCGTA 57.366 33.333 0.00 0.00 0.00 3.43
4504 7908 8.744008 AGTATTGCACATATAAGTCGTATGTC 57.256 34.615 0.00 0.00 39.95 3.06
4505 7909 8.357402 AGTATTGCACATATAAGTCGTATGTCA 58.643 33.333 0.00 0.00 39.95 3.58
4506 7910 9.140286 GTATTGCACATATAAGTCGTATGTCAT 57.860 33.333 0.00 0.00 39.95 3.06
4507 7911 8.607441 ATTGCACATATAAGTCGTATGTCATT 57.393 30.769 0.00 0.00 39.95 2.57
4508 7912 7.406799 TGCACATATAAGTCGTATGTCATTG 57.593 36.000 0.00 0.00 39.95 2.82
4509 7913 7.206687 TGCACATATAAGTCGTATGTCATTGA 58.793 34.615 0.00 0.00 39.95 2.57
4510 7914 7.872483 TGCACATATAAGTCGTATGTCATTGAT 59.128 33.333 0.00 0.00 39.95 2.57
4511 7915 8.712363 GCACATATAAGTCGTATGTCATTGATT 58.288 33.333 0.00 0.00 39.95 2.57
4517 7921 7.591006 AAGTCGTATGTCATTGATTTTACGT 57.409 32.000 17.68 0.00 35.29 3.57
4518 7922 6.989437 AGTCGTATGTCATTGATTTTACGTG 58.011 36.000 17.68 0.00 35.29 4.49
4519 7923 6.035650 AGTCGTATGTCATTGATTTTACGTGG 59.964 38.462 17.68 1.45 35.29 4.94
4520 7924 6.035220 GTCGTATGTCATTGATTTTACGTGGA 59.965 38.462 17.68 0.00 35.29 4.02
4521 7925 6.254804 TCGTATGTCATTGATTTTACGTGGAG 59.745 38.462 17.68 0.98 35.29 3.86
4522 7926 6.254804 CGTATGTCATTGATTTTACGTGGAGA 59.745 38.462 0.00 0.00 0.00 3.71
4523 7927 7.042725 CGTATGTCATTGATTTTACGTGGAGAT 60.043 37.037 0.00 0.00 0.00 2.75
4524 7928 7.630242 ATGTCATTGATTTTACGTGGAGATT 57.370 32.000 0.00 0.00 0.00 2.40
4525 7929 7.072177 TGTCATTGATTTTACGTGGAGATTC 57.928 36.000 0.00 0.00 0.00 2.52
4526 7930 6.652900 TGTCATTGATTTTACGTGGAGATTCA 59.347 34.615 0.00 0.00 0.00 2.57
4527 7931 7.336679 TGTCATTGATTTTACGTGGAGATTCAT 59.663 33.333 0.00 0.00 0.00 2.57
4528 7932 7.641411 GTCATTGATTTTACGTGGAGATTCATG 59.359 37.037 0.00 0.00 0.00 3.07
4529 7933 5.484173 TGATTTTACGTGGAGATTCATGC 57.516 39.130 0.00 0.00 0.00 4.06
4530 7934 4.940654 TGATTTTACGTGGAGATTCATGCA 59.059 37.500 0.00 0.00 0.00 3.96
4531 7935 5.589855 TGATTTTACGTGGAGATTCATGCAT 59.410 36.000 0.00 0.00 0.00 3.96
4532 7936 6.765512 TGATTTTACGTGGAGATTCATGCATA 59.234 34.615 0.00 0.00 0.00 3.14
4533 7937 5.984233 TTTACGTGGAGATTCATGCATAC 57.016 39.130 0.00 0.00 0.00 2.39
4534 7938 3.541996 ACGTGGAGATTCATGCATACA 57.458 42.857 0.00 0.00 0.00 2.29
4535 7939 4.077300 ACGTGGAGATTCATGCATACAT 57.923 40.909 0.00 0.00 36.79 2.29
4536 7940 4.454678 ACGTGGAGATTCATGCATACATT 58.545 39.130 0.00 0.00 32.87 2.71
4537 7941 4.883585 ACGTGGAGATTCATGCATACATTT 59.116 37.500 0.00 0.00 32.87 2.32
4538 7942 5.357878 ACGTGGAGATTCATGCATACATTTT 59.642 36.000 0.00 0.00 32.87 1.82
4539 7943 5.911280 CGTGGAGATTCATGCATACATTTTC 59.089 40.000 0.00 0.00 32.87 2.29
4540 7944 6.458615 CGTGGAGATTCATGCATACATTTTCA 60.459 38.462 0.00 0.00 32.87 2.69
4541 7945 7.431249 GTGGAGATTCATGCATACATTTTCAT 58.569 34.615 0.00 0.00 32.87 2.57
4542 7946 7.924412 GTGGAGATTCATGCATACATTTTCATT 59.076 33.333 0.00 0.00 32.87 2.57
4543 7947 8.479689 TGGAGATTCATGCATACATTTTCATTT 58.520 29.630 0.00 0.00 32.87 2.32
4544 7948 9.321562 GGAGATTCATGCATACATTTTCATTTT 57.678 29.630 0.00 0.00 32.87 1.82
4553 7957 9.995003 TGCATACATTTTCATTTTTCTTTACCT 57.005 25.926 0.00 0.00 0.00 3.08
4562 7966 9.816354 TTTCATTTTTCTTTACCTTTTCAGGAG 57.184 29.630 0.00 0.00 44.19 3.69
4563 7967 8.533569 TCATTTTTCTTTACCTTTTCAGGAGT 57.466 30.769 0.00 0.00 44.19 3.85
4564 7968 9.635404 TCATTTTTCTTTACCTTTTCAGGAGTA 57.365 29.630 0.00 0.00 44.19 2.59
4565 7969 9.899226 CATTTTTCTTTACCTTTTCAGGAGTAG 57.101 33.333 0.00 0.00 44.19 2.57
4566 7970 9.642343 ATTTTTCTTTACCTTTTCAGGAGTAGT 57.358 29.630 0.00 0.00 44.19 2.73
4567 7971 9.470399 TTTTTCTTTACCTTTTCAGGAGTAGTT 57.530 29.630 0.00 0.00 44.19 2.24
4568 7972 8.672823 TTTCTTTACCTTTTCAGGAGTAGTTC 57.327 34.615 0.00 0.00 44.19 3.01
4569 7973 6.453092 TCTTTACCTTTTCAGGAGTAGTTCG 58.547 40.000 0.00 0.00 44.19 3.95
4570 7974 6.266103 TCTTTACCTTTTCAGGAGTAGTTCGA 59.734 38.462 0.00 0.00 44.19 3.71
4571 7975 6.600882 TTACCTTTTCAGGAGTAGTTCGAT 57.399 37.500 0.00 0.00 44.19 3.59
4572 7976 5.485209 ACCTTTTCAGGAGTAGTTCGATT 57.515 39.130 0.00 0.00 44.19 3.34
4573 7977 5.238583 ACCTTTTCAGGAGTAGTTCGATTG 58.761 41.667 0.00 0.00 44.19 2.67
4574 7978 5.011738 ACCTTTTCAGGAGTAGTTCGATTGA 59.988 40.000 0.00 0.00 44.19 2.57
4575 7979 5.578727 CCTTTTCAGGAGTAGTTCGATTGAG 59.421 44.000 0.00 0.00 44.19 3.02
4576 7980 5.723672 TTTCAGGAGTAGTTCGATTGAGT 57.276 39.130 0.00 0.00 0.00 3.41
4577 7981 4.966965 TCAGGAGTAGTTCGATTGAGTC 57.033 45.455 0.00 0.00 0.00 3.36
4578 7982 4.332828 TCAGGAGTAGTTCGATTGAGTCA 58.667 43.478 0.00 0.00 0.00 3.41
4579 7983 4.156190 TCAGGAGTAGTTCGATTGAGTCAC 59.844 45.833 0.00 0.00 0.00 3.67
4580 7984 4.156922 CAGGAGTAGTTCGATTGAGTCACT 59.843 45.833 0.00 0.00 0.00 3.41
4581 7985 4.767928 AGGAGTAGTTCGATTGAGTCACTT 59.232 41.667 0.00 0.00 0.00 3.16
4582 7986 5.944599 AGGAGTAGTTCGATTGAGTCACTTA 59.055 40.000 0.00 0.00 0.00 2.24
4583 7987 6.094325 AGGAGTAGTTCGATTGAGTCACTTAG 59.906 42.308 0.00 0.00 0.00 2.18
4584 7988 6.093771 GGAGTAGTTCGATTGAGTCACTTAGA 59.906 42.308 0.00 0.00 0.00 2.10
4585 7989 7.201750 GGAGTAGTTCGATTGAGTCACTTAGAT 60.202 40.741 0.00 0.00 0.00 1.98
4586 7990 7.476667 AGTAGTTCGATTGAGTCACTTAGATG 58.523 38.462 0.00 0.00 0.00 2.90
4587 7991 6.274157 AGTTCGATTGAGTCACTTAGATGT 57.726 37.500 0.00 0.00 0.00 3.06
4588 7992 6.096036 AGTTCGATTGAGTCACTTAGATGTG 58.904 40.000 0.00 0.00 39.15 3.21
4589 7993 4.424626 TCGATTGAGTCACTTAGATGTGC 58.575 43.478 0.00 0.00 37.81 4.57
4590 7994 4.082245 TCGATTGAGTCACTTAGATGTGCA 60.082 41.667 0.00 0.00 37.81 4.57
4591 7995 4.627035 CGATTGAGTCACTTAGATGTGCAA 59.373 41.667 0.00 0.00 37.81 4.08
4592 7996 5.292834 CGATTGAGTCACTTAGATGTGCAAT 59.707 40.000 0.00 0.00 37.81 3.56
4593 7997 6.476706 CGATTGAGTCACTTAGATGTGCAATA 59.523 38.462 0.00 0.00 37.81 1.90
4594 7998 7.010460 CGATTGAGTCACTTAGATGTGCAATAA 59.990 37.037 0.00 0.00 37.81 1.40
4595 7999 6.968131 TGAGTCACTTAGATGTGCAATAAC 57.032 37.500 0.00 0.00 37.81 1.89
4596 8000 6.463360 TGAGTCACTTAGATGTGCAATAACA 58.537 36.000 0.00 0.00 37.81 2.41
4597 8001 6.368791 TGAGTCACTTAGATGTGCAATAACAC 59.631 38.462 0.00 0.00 41.10 3.32
4608 8012 5.331098 TGTGCAATAACACATTTAGATGCG 58.669 37.500 0.00 0.00 45.36 4.73
4609 8013 5.106357 TGTGCAATAACACATTTAGATGCGT 60.106 36.000 0.00 0.00 45.36 5.24
4610 8014 5.452302 GTGCAATAACACATTTAGATGCGTC 59.548 40.000 0.00 0.00 40.40 5.19
4611 8015 5.353956 TGCAATAACACATTTAGATGCGTCT 59.646 36.000 14.07 14.07 36.72 4.18
4612 8016 6.128035 TGCAATAACACATTTAGATGCGTCTT 60.128 34.615 14.93 0.00 36.72 3.01
4613 8017 7.065204 TGCAATAACACATTTAGATGCGTCTTA 59.935 33.333 14.93 1.26 36.72 2.10
4614 8018 7.584123 GCAATAACACATTTAGATGCGTCTTAG 59.416 37.037 14.93 4.56 36.72 2.18
4615 8019 8.604035 CAATAACACATTTAGATGCGTCTTAGT 58.396 33.333 14.93 5.19 36.72 2.24
4616 8020 9.811995 AATAACACATTTAGATGCGTCTTAGTA 57.188 29.630 14.93 0.00 36.72 1.82
4617 8021 9.982651 ATAACACATTTAGATGCGTCTTAGTAT 57.017 29.630 14.93 0.20 36.72 2.12
4619 8023 9.811995 AACACATTTAGATGCGTCTTAGTATAA 57.188 29.630 14.93 0.00 36.72 0.98
4620 8024 9.982651 ACACATTTAGATGCGTCTTAGTATAAT 57.017 29.630 14.93 2.66 36.72 1.28
4714 8118 8.311650 ACTAGATTTTCGTGATATATTGTGCC 57.688 34.615 0.00 0.00 0.00 5.01
4723 8127 4.627467 GTGATATATTGTGCCCATCGTCTC 59.373 45.833 0.00 0.00 0.00 3.36
4725 8129 0.104120 TATTGTGCCCATCGTCTCCG 59.896 55.000 0.00 0.00 0.00 4.63
4727 8131 3.771160 GTGCCCATCGTCTCCGGT 61.771 66.667 0.00 0.00 33.95 5.28
4732 8136 1.753078 CCATCGTCTCCGGTCTCCA 60.753 63.158 0.00 0.00 33.95 3.86
4734 8138 1.032657 CATCGTCTCCGGTCTCCACT 61.033 60.000 0.00 0.00 33.95 4.00
4735 8139 1.032657 ATCGTCTCCGGTCTCCACTG 61.033 60.000 0.00 0.00 33.95 3.66
4741 8145 0.032952 TCCGGTCTCCACTGAAAACG 59.967 55.000 0.00 0.00 0.00 3.60
4762 8166 3.370061 CGGACCTTTGGTAAGATCGAAAC 59.630 47.826 0.00 0.00 35.25 2.78
4763 8167 4.320870 GGACCTTTGGTAAGATCGAAACA 58.679 43.478 0.00 0.00 35.25 2.83
4772 8176 4.209288 GGTAAGATCGAAACATCGACATGG 59.791 45.833 2.72 0.00 45.30 3.66
4773 8177 2.205074 AGATCGAAACATCGACATGGC 58.795 47.619 2.72 0.00 45.30 4.40
4779 8183 3.248363 CGAAACATCGACATGGCATATGT 59.752 43.478 10.11 10.11 33.82 2.29
4780 8184 4.530388 GAAACATCGACATGGCATATGTG 58.470 43.478 15.37 0.00 33.82 3.21
4781 8185 3.198409 ACATCGACATGGCATATGTGT 57.802 42.857 14.21 2.09 33.82 3.72
4787 8191 3.304190 CGACATGGCATATGTGTGAATGG 60.304 47.826 10.16 0.00 31.52 3.16
4795 8199 4.202182 GCATATGTGTGAATGGCCTGAAAT 60.202 41.667 3.32 0.00 0.00 2.17
4796 8200 5.009911 GCATATGTGTGAATGGCCTGAAATA 59.990 40.000 3.32 0.00 0.00 1.40
4797 8201 6.675026 CATATGTGTGAATGGCCTGAAATAG 58.325 40.000 3.32 0.00 0.00 1.73
4798 8202 4.299586 TGTGTGAATGGCCTGAAATAGA 57.700 40.909 3.32 0.00 0.00 1.98
4799 8203 4.264253 TGTGTGAATGGCCTGAAATAGAG 58.736 43.478 3.32 0.00 0.00 2.43
4800 8204 4.019411 TGTGTGAATGGCCTGAAATAGAGA 60.019 41.667 3.32 0.00 0.00 3.10
4801 8205 4.943705 GTGTGAATGGCCTGAAATAGAGAA 59.056 41.667 3.32 0.00 0.00 2.87
4802 8206 5.065731 GTGTGAATGGCCTGAAATAGAGAAG 59.934 44.000 3.32 0.00 0.00 2.85
4803 8207 5.045651 TGTGAATGGCCTGAAATAGAGAAGA 60.046 40.000 3.32 0.00 0.00 2.87
4804 8208 6.060788 GTGAATGGCCTGAAATAGAGAAGAT 58.939 40.000 3.32 0.00 0.00 2.40
4808 8289 6.257994 TGGCCTGAAATAGAGAAGATCAAT 57.742 37.500 3.32 0.00 0.00 2.57
4814 8295 7.307278 CCTGAAATAGAGAAGATCAATTGCTCG 60.307 40.741 0.00 0.00 0.00 5.03
4815 8296 6.481313 TGAAATAGAGAAGATCAATTGCTCGG 59.519 38.462 0.00 0.00 0.00 4.63
4818 8299 2.537625 GAGAAGATCAATTGCTCGGTCG 59.462 50.000 0.00 0.00 0.00 4.79
4831 8312 0.879765 TCGGTCGGTTCTCTCTGTTC 59.120 55.000 0.00 0.00 0.00 3.18
4842 8323 5.107298 GGTTCTCTCTGTTCGTCTGAATTTG 60.107 44.000 0.00 0.00 36.29 2.32
4843 8324 3.990469 TCTCTCTGTTCGTCTGAATTTGC 59.010 43.478 0.00 0.00 36.29 3.68
4844 8325 3.727726 TCTCTGTTCGTCTGAATTTGCA 58.272 40.909 0.00 0.00 36.29 4.08
4845 8326 3.742882 TCTCTGTTCGTCTGAATTTGCAG 59.257 43.478 0.00 0.00 36.29 4.41
4846 8327 3.466836 TCTGTTCGTCTGAATTTGCAGT 58.533 40.909 0.00 0.00 36.29 4.40
4857 8338 6.007076 TCTGAATTTGCAGTTTATACCACCA 58.993 36.000 0.00 0.00 37.20 4.17
4858 8339 6.491745 TCTGAATTTGCAGTTTATACCACCAA 59.508 34.615 0.00 0.00 37.20 3.67
4881 8362 7.330208 CCAAAGAAGGCAGTTTGATAATTCAAG 59.670 37.037 7.55 0.00 42.60 3.02
4887 8368 4.334443 CAGTTTGATAATTCAAGCGACGG 58.666 43.478 0.00 0.00 44.91 4.79
4900 8381 1.429148 GCGACGGCTGGGAACATAAG 61.429 60.000 0.00 0.00 41.51 1.73
4902 8383 1.135527 CGACGGCTGGGAACATAAGTA 59.864 52.381 0.00 0.00 41.51 2.24
4903 8384 2.547826 GACGGCTGGGAACATAAGTAC 58.452 52.381 0.00 0.00 41.51 2.73
4904 8385 2.167900 GACGGCTGGGAACATAAGTACT 59.832 50.000 0.00 0.00 41.51 2.73
4930 8411 7.047891 ACTGATAACATTTATTCTTCAGGCGA 58.952 34.615 0.00 0.00 34.78 5.54
4959 8440 7.928167 ACATCAGGAAATCAAGAAAAGAAAACC 59.072 33.333 0.00 0.00 0.00 3.27
4965 8446 4.457834 TCAAGAAAAGAAAACCCGCAAA 57.542 36.364 0.00 0.00 0.00 3.68
4968 8449 5.350091 TCAAGAAAAGAAAACCCGCAAAAAG 59.650 36.000 0.00 0.00 0.00 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
77 78 9.931210 CTTTTCACTTCTAGAAAAACGTAACAT 57.069 29.630 6.63 0.00 42.45 2.71
219 240 1.003759 GCTCTCAGATTGCAGCATTCG 60.004 52.381 10.87 7.07 0.00 3.34
226 261 3.068590 TGATGATACGCTCTCAGATTGCA 59.931 43.478 0.00 0.00 0.00 4.08
252 2071 2.224670 TGAGCGTTTATTGGGAGTGGTT 60.225 45.455 0.00 0.00 0.00 3.67
268 2087 1.869767 AGCAAAACAACTCTCTGAGCG 59.130 47.619 0.00 0.00 32.04 5.03
284 2103 7.645402 CATGACAAGCATATCTATTTCAGCAA 58.355 34.615 0.00 0.00 34.82 3.91
301 2120 9.630098 AATCTTTGTACAAAATAGCATGACAAG 57.370 29.630 20.89 5.73 0.00 3.16
366 2185 2.223782 GCATGGCAAATTCCTCGCAATA 60.224 45.455 0.00 0.00 0.00 1.90
371 2190 0.526954 GCAGCATGGCAAATTCCTCG 60.527 55.000 0.00 0.00 35.86 4.63
372 2191 0.533491 TGCAGCATGGCAAATTCCTC 59.467 50.000 0.00 0.00 41.65 3.71
393 2212 6.442952 TCGAAAACCCATGACAATTACTTTG 58.557 36.000 0.00 0.00 41.36 2.77
395 2214 5.183140 CCTCGAAAACCCATGACAATTACTT 59.817 40.000 0.00 0.00 0.00 2.24
403 2222 4.783764 AAAATCCTCGAAAACCCATGAC 57.216 40.909 0.00 0.00 0.00 3.06
408 2227 5.385509 TCATGAAAAATCCTCGAAAACCC 57.614 39.130 0.00 0.00 0.00 4.11
409 2228 5.289434 GCATCATGAAAAATCCTCGAAAACC 59.711 40.000 0.00 0.00 0.00 3.27
423 2242 5.925506 ATTCTCCATGTTGCATCATGAAA 57.074 34.783 30.59 22.41 45.41 2.69
424 2243 5.656480 CAATTCTCCATGTTGCATCATGAA 58.344 37.500 30.59 20.41 45.41 2.57
426 2245 3.802139 GCAATTCTCCATGTTGCATCATG 59.198 43.478 24.76 24.76 45.57 3.07
427 2246 4.054780 GCAATTCTCCATGTTGCATCAT 57.945 40.909 11.82 4.37 45.57 2.45
428 2247 3.513680 GCAATTCTCCATGTTGCATCA 57.486 42.857 11.82 0.00 45.57 3.07
432 2251 2.223665 GGCTAGCAATTCTCCATGTTGC 60.224 50.000 18.24 9.35 46.37 4.17
433 2252 3.285484 AGGCTAGCAATTCTCCATGTTG 58.715 45.455 18.24 0.00 0.00 3.33
472 2291 7.408756 AGTAGCATGGCAATTTCTGAATAAA 57.591 32.000 0.00 0.00 0.00 1.40
476 2295 8.696043 AATATAGTAGCATGGCAATTTCTGAA 57.304 30.769 0.00 0.00 0.00 3.02
503 2322 4.508492 TCTTCGACGTAAGCATGACAAAAA 59.492 37.500 0.00 0.00 45.62 1.94
504 2323 4.052608 TCTTCGACGTAAGCATGACAAAA 58.947 39.130 0.00 0.00 45.62 2.44
505 2324 3.644823 TCTTCGACGTAAGCATGACAAA 58.355 40.909 0.00 0.00 45.62 2.83
509 2328 4.909880 CGATTATCTTCGACGTAAGCATGA 59.090 41.667 0.00 0.00 41.62 3.07
517 2336 2.421073 TGTCACCGATTATCTTCGACGT 59.579 45.455 0.00 0.00 41.62 4.34
564 2383 7.766283 TGAGCGAATACATCTAGGATGATAAG 58.234 38.462 13.51 3.54 0.00 1.73
565 2384 7.703058 TGAGCGAATACATCTAGGATGATAA 57.297 36.000 13.51 0.88 0.00 1.75
568 2387 6.405278 TTTGAGCGAATACATCTAGGATGA 57.595 37.500 13.51 0.00 0.00 2.92
570 2389 6.148480 GCAATTTGAGCGAATACATCTAGGAT 59.852 38.462 0.00 0.00 0.00 3.24
573 2392 5.237127 TGGCAATTTGAGCGAATACATCTAG 59.763 40.000 0.00 0.00 0.00 2.43
575 2394 3.947196 TGGCAATTTGAGCGAATACATCT 59.053 39.130 0.00 0.00 0.00 2.90
579 2398 2.159572 ACGTGGCAATTTGAGCGAATAC 60.160 45.455 0.00 0.00 0.00 1.89
623 2444 1.059692 GAGCGAATGTGATGTGACACG 59.940 52.381 0.22 0.00 42.86 4.49
653 2474 4.950050 ACAATCCGACATTAGCTTAGAGG 58.050 43.478 0.00 0.00 0.00 3.69
795 2616 7.893302 AGTCAAGAAATAATACCATTCCCACAA 59.107 33.333 0.00 0.00 0.00 3.33
796 2617 7.410174 AGTCAAGAAATAATACCATTCCCACA 58.590 34.615 0.00 0.00 0.00 4.17
798 2619 8.217799 CCTAGTCAAGAAATAATACCATTCCCA 58.782 37.037 0.00 0.00 0.00 4.37
799 2620 7.665974 CCCTAGTCAAGAAATAATACCATTCCC 59.334 40.741 0.00 0.00 0.00 3.97
800 2621 8.437575 TCCCTAGTCAAGAAATAATACCATTCC 58.562 37.037 0.00 0.00 0.00 3.01
845 2666 1.376649 AGCCCTTTGTCCCAGATTCT 58.623 50.000 0.00 0.00 0.00 2.40
848 2669 5.193728 TCTTATTAAGCCCTTTGTCCCAGAT 59.806 40.000 0.00 0.00 0.00 2.90
849 2670 4.538490 TCTTATTAAGCCCTTTGTCCCAGA 59.462 41.667 0.00 0.00 0.00 3.86
850 2671 4.855340 TCTTATTAAGCCCTTTGTCCCAG 58.145 43.478 0.00 0.00 0.00 4.45
881 2718 3.380004 TGTTCGATTGGGCCATTATCAAC 59.620 43.478 7.26 14.70 0.00 3.18
883 2720 3.213506 CTGTTCGATTGGGCCATTATCA 58.786 45.455 7.26 1.79 0.00 2.15
901 2781 2.257409 CTTGTATGGGCCGAGGCTGT 62.257 60.000 14.33 3.19 41.60 4.40
907 2787 0.830648 CCTTCTCTTGTATGGGCCGA 59.169 55.000 0.00 0.00 0.00 5.54
946 2843 2.610374 AGACTCGCACTATCTTCTCGAC 59.390 50.000 0.00 0.00 0.00 4.20
948 2845 3.613563 GAAGACTCGCACTATCTTCTCG 58.386 50.000 6.07 0.00 43.29 4.04
959 2856 1.546476 GGAGGAAGAAGAAGACTCGCA 59.454 52.381 0.00 0.00 0.00 5.10
1036 2933 1.745489 GCAACCCACCTCACGATCC 60.745 63.158 0.00 0.00 0.00 3.36
1377 3304 3.816090 GGTGGTGGTGGTGGTGGT 61.816 66.667 0.00 0.00 0.00 4.16
1378 3305 4.947147 CGGTGGTGGTGGTGGTGG 62.947 72.222 0.00 0.00 0.00 4.61
1652 3579 3.803162 GCCCTCCTCTTCCAGGCC 61.803 72.222 0.00 0.00 43.08 5.19
1853 3780 4.355720 CCCTGCTCCTGCTTGCCA 62.356 66.667 0.00 0.00 40.48 4.92
1904 3831 2.383601 AATAACCCCTGCCCTCCGG 61.384 63.158 0.00 0.00 0.00 5.14
1991 3918 7.367285 GGAAAATATTTACCATATTGCGCAGA 58.633 34.615 11.31 2.77 0.00 4.26
2054 3982 3.808726 TGTTCATGCAAACCTGAAAATGC 59.191 39.130 2.14 0.00 39.22 3.56
2069 3997 5.248640 ACCACTACTTCATCCTTGTTCATG 58.751 41.667 0.00 0.00 0.00 3.07
2075 4003 5.122869 CACATGAACCACTACTTCATCCTTG 59.877 44.000 0.00 0.00 36.42 3.61
2098 4026 2.378547 AGAGGGGAAAACAGGCATAACA 59.621 45.455 0.00 0.00 0.00 2.41
2104 4032 1.955683 GCCTAAGAGGGGAAAACAGGC 60.956 57.143 0.00 0.00 40.22 4.85
2109 4037 0.326927 CGGTGCCTAAGAGGGGAAAA 59.673 55.000 0.00 0.00 35.37 2.29
2142 4070 7.826744 TGTCAGCATATATAAACACACAAGGAA 59.173 33.333 0.00 0.00 0.00 3.36
2206 4134 8.120465 GGTGATATCTAAATTACACAACCAACG 58.880 37.037 3.98 0.00 0.00 4.10
2216 4144 8.709646 CGGTTGCTAAGGTGATATCTAAATTAC 58.290 37.037 3.98 0.00 0.00 1.89
2249 4177 3.475575 TCAACAACAGCAGCAGATGTAA 58.524 40.909 0.00 0.00 45.00 2.41
2308 4236 6.644592 GGATGATGATATTCTAGAATAGCCGC 59.355 42.308 28.93 22.41 38.51 6.53
2357 4286 2.919859 CAGCACACGAGTAGAGACAATG 59.080 50.000 0.00 0.00 0.00 2.82
2370 4299 2.470821 GTATTAGGCTACCAGCACACG 58.529 52.381 0.00 0.00 44.75 4.49
2411 4347 8.458843 ACAAGGCAATTATGTCACATTAACTAC 58.541 33.333 0.00 0.00 31.99 2.73
2412 4348 8.574251 ACAAGGCAATTATGTCACATTAACTA 57.426 30.769 0.00 0.00 31.99 2.24
2413 4349 7.466746 ACAAGGCAATTATGTCACATTAACT 57.533 32.000 0.00 0.00 31.99 2.24
2414 4350 7.063308 CCAACAAGGCAATTATGTCACATTAAC 59.937 37.037 0.00 0.00 31.99 2.01
2415 4351 7.095910 CCAACAAGGCAATTATGTCACATTAA 58.904 34.615 0.00 0.00 31.99 1.40
2416 4352 6.210385 ACCAACAAGGCAATTATGTCACATTA 59.790 34.615 0.00 0.00 43.14 1.90
2417 4353 5.011943 ACCAACAAGGCAATTATGTCACATT 59.988 36.000 0.00 0.00 43.14 2.71
2471 4407 5.582269 CCTGTCTATGTGTTTACTGGACATG 59.418 44.000 0.00 0.00 34.00 3.21
2677 4620 6.553852 TCCACCCCAAGTTCTCTAATAGATAC 59.446 42.308 0.00 0.00 33.05 2.24
2775 4842 6.780457 AAATTACCATGCATAAGCTGTCTT 57.220 33.333 0.00 0.00 42.74 3.01
2787 4856 6.578023 TGCCTATTAACCAAAATTACCATGC 58.422 36.000 0.00 0.00 0.00 4.06
2792 4861 8.899771 TCTTAGCTGCCTATTAACCAAAATTAC 58.100 33.333 0.00 0.00 0.00 1.89
2816 4885 5.532557 GCAACCTGCAAAGACTAAAATTCT 58.467 37.500 0.00 0.00 44.26 2.40
2883 4953 5.488645 TTGGACCTTAAGTTCACGTTTTC 57.511 39.130 2.19 0.00 31.88 2.29
3062 5333 2.037641 TCATCAGGTTCTATGCCCATCG 59.962 50.000 0.00 0.00 0.00 3.84
3086 5357 6.208599 ACCATTGTAGTACCCAAATTCAACAG 59.791 38.462 0.00 0.00 0.00 3.16
3090 5361 5.636123 ACACCATTGTAGTACCCAAATTCA 58.364 37.500 0.00 0.00 32.60 2.57
3119 5390 1.681264 CAACCCTCAGTGGTCAAAACC 59.319 52.381 0.00 0.00 46.66 3.27
3150 5429 7.991084 AAAACCTAACCTGTTTGACCTATAC 57.009 36.000 0.00 0.00 36.14 1.47
3424 5717 2.479275 GACAAGAACTCGCACCTTAACC 59.521 50.000 0.00 0.00 0.00 2.85
3434 5727 3.381045 TGTTGCACTAGACAAGAACTCG 58.619 45.455 0.00 0.00 0.00 4.18
3440 5733 6.128553 ACGATTAACATGTTGCACTAGACAAG 60.129 38.462 21.42 2.94 0.00 3.16
3464 5760 2.553602 TCTGCACATGTTTCATGGTGAC 59.446 45.455 13.15 7.00 33.16 3.67
3559 5855 0.380733 TCTCGAATATCAGCACGCGT 59.619 50.000 5.58 5.58 0.00 6.01
3664 5960 1.192146 AGTAGCGCCCTTCCAGTTCA 61.192 55.000 2.29 0.00 0.00 3.18
3706 6002 0.886563 TTCCCTCGTCGAAGAAGGTC 59.113 55.000 14.55 0.00 39.69 3.85
3824 6123 7.169982 GCGTTCATGCTCTAGATTAAGTTACAT 59.830 37.037 0.00 0.00 0.00 2.29
3884 6183 1.344114 GGCCAACATTCACCAACATGT 59.656 47.619 0.00 0.00 35.00 3.21
3902 6201 4.718940 ACAACAATAAGTGGCAATAGGC 57.281 40.909 0.00 0.00 43.74 3.93
3939 6244 2.900546 ACCTCTACACCCAGAAGTTGAG 59.099 50.000 0.00 0.00 37.36 3.02
3942 6247 2.900546 CTCACCTCTACACCCAGAAGTT 59.099 50.000 0.00 0.00 0.00 2.66
3943 6248 2.158295 ACTCACCTCTACACCCAGAAGT 60.158 50.000 0.00 0.00 0.00 3.01
3944 6249 2.530701 ACTCACCTCTACACCCAGAAG 58.469 52.381 0.00 0.00 0.00 2.85
3964 6269 1.734117 CGGCGATGCGATGCAGATA 60.734 57.895 0.00 0.00 43.65 1.98
4004 6312 7.251704 AGAATTAACAAGAATACCTGATGCG 57.748 36.000 0.00 0.00 0.00 4.73
4045 6358 5.954153 ATATTGCCAAATTCAATGGGTGA 57.046 34.783 2.04 0.00 38.44 4.02
4055 6368 6.687139 GCTTGAGGGATCAATATTGCCAAATT 60.687 38.462 10.76 0.00 0.00 1.82
4086 6399 4.444876 GCTCTATTGCCAAAGAGGTGGATA 60.445 45.833 14.34 0.00 41.65 2.59
4103 6418 1.974236 GGTAGATGCACCAGGCTCTAT 59.026 52.381 0.00 0.00 45.15 1.98
4104 6419 1.414158 GGTAGATGCACCAGGCTCTA 58.586 55.000 0.00 0.00 45.15 2.43
4190 6505 7.716799 ATTGCCACAAAATATAGAAACTCCA 57.283 32.000 0.00 0.00 0.00 3.86
4198 7578 7.814107 ACTCAACACAATTGCCACAAAATATAG 59.186 33.333 5.05 0.00 0.00 1.31
4231 7611 9.793259 AGAAAGTTCATAATCTTCAGGTTGTTA 57.207 29.630 0.00 0.00 0.00 2.41
4245 7639 8.909923 TGACGATCATAGGTAGAAAGTTCATAA 58.090 33.333 0.00 0.00 0.00 1.90
4275 7669 9.334693 CTTGAAGCAATTTGATTGTAGTCTAAC 57.665 33.333 4.34 0.00 42.20 2.34
4278 7672 7.516198 ACTTGAAGCAATTTGATTGTAGTCT 57.484 32.000 4.34 0.00 42.20 3.24
4279 7673 6.521133 CGACTTGAAGCAATTTGATTGTAGTC 59.479 38.462 18.95 18.95 42.20 2.59
4281 7675 5.796935 CCGACTTGAAGCAATTTGATTGTAG 59.203 40.000 4.34 4.52 42.20 2.74
4298 7692 3.328382 TGGAGATTGGTAACCGACTTG 57.672 47.619 0.00 0.00 0.00 3.16
4320 7714 8.450578 TTGTATGAATTGTGTAATCTCCCATC 57.549 34.615 0.00 0.00 0.00 3.51
4402 7806 9.489393 CAAAAGGACAAAATCAAAAAGTTTAGC 57.511 29.630 0.00 0.00 0.00 3.09
4433 7837 9.797473 GTTTTAGCAAAACTGCATTAGATTTTC 57.203 29.630 13.73 0.00 45.55 2.29
4448 7852 8.969121 CACATCATAGATGTGTTTTAGCAAAA 57.031 30.769 24.65 0.00 43.11 2.44
4472 7876 7.117667 CGACTTATATGTGCAATACTTATGGCA 59.882 37.037 0.00 0.00 40.19 4.92
4473 7877 7.117812 ACGACTTATATGTGCAATACTTATGGC 59.882 37.037 0.00 0.00 33.27 4.40
4474 7878 8.534333 ACGACTTATATGTGCAATACTTATGG 57.466 34.615 0.00 0.00 33.27 2.74
4478 7882 9.193133 GACATACGACTTATATGTGCAATACTT 57.807 33.333 2.50 0.00 42.11 2.24
4479 7883 8.357402 TGACATACGACTTATATGTGCAATACT 58.643 33.333 2.50 0.00 42.11 2.12
4480 7884 8.515473 TGACATACGACTTATATGTGCAATAC 57.485 34.615 2.50 0.00 42.11 1.89
4481 7885 9.705290 AATGACATACGACTTATATGTGCAATA 57.295 29.630 2.50 0.00 42.11 1.90
4482 7886 8.498358 CAATGACATACGACTTATATGTGCAAT 58.502 33.333 2.50 0.00 42.11 3.56
4483 7887 7.708752 TCAATGACATACGACTTATATGTGCAA 59.291 33.333 2.50 0.00 42.11 4.08
4484 7888 7.206687 TCAATGACATACGACTTATATGTGCA 58.793 34.615 2.50 0.00 42.11 4.57
4485 7889 7.637709 TCAATGACATACGACTTATATGTGC 57.362 36.000 2.50 0.00 42.11 4.57
4491 7895 9.309516 ACGTAAAATCAATGACATACGACTTAT 57.690 29.630 22.30 5.48 39.36 1.73
4492 7896 8.588789 CACGTAAAATCAATGACATACGACTTA 58.411 33.333 22.30 1.37 39.36 2.24
4493 7897 7.412563 CCACGTAAAATCAATGACATACGACTT 60.413 37.037 22.30 6.00 39.36 3.01
4494 7898 6.035650 CCACGTAAAATCAATGACATACGACT 59.964 38.462 22.30 6.51 39.36 4.18
4495 7899 6.035220 TCCACGTAAAATCAATGACATACGAC 59.965 38.462 22.30 2.80 39.36 4.34
4496 7900 6.100668 TCCACGTAAAATCAATGACATACGA 58.899 36.000 22.30 1.52 39.36 3.43
4497 7901 6.254804 TCTCCACGTAAAATCAATGACATACG 59.745 38.462 17.10 17.10 41.20 3.06
4498 7902 7.534085 TCTCCACGTAAAATCAATGACATAC 57.466 36.000 0.00 0.00 0.00 2.39
4499 7903 8.731275 AATCTCCACGTAAAATCAATGACATA 57.269 30.769 0.00 0.00 0.00 2.29
4500 7904 7.336679 TGAATCTCCACGTAAAATCAATGACAT 59.663 33.333 0.00 0.00 0.00 3.06
4501 7905 6.652900 TGAATCTCCACGTAAAATCAATGACA 59.347 34.615 0.00 0.00 0.00 3.58
4502 7906 7.072177 TGAATCTCCACGTAAAATCAATGAC 57.928 36.000 0.00 0.00 0.00 3.06
4503 7907 7.679400 GCATGAATCTCCACGTAAAATCAATGA 60.679 37.037 0.00 0.00 0.00 2.57
4504 7908 6.415867 GCATGAATCTCCACGTAAAATCAATG 59.584 38.462 0.00 0.00 0.00 2.82
4505 7909 6.095300 TGCATGAATCTCCACGTAAAATCAAT 59.905 34.615 0.00 0.00 0.00 2.57
4506 7910 5.414144 TGCATGAATCTCCACGTAAAATCAA 59.586 36.000 0.00 0.00 0.00 2.57
4507 7911 4.940654 TGCATGAATCTCCACGTAAAATCA 59.059 37.500 0.00 0.00 0.00 2.57
4508 7912 5.484173 TGCATGAATCTCCACGTAAAATC 57.516 39.130 0.00 0.00 0.00 2.17
4509 7913 6.542005 TGTATGCATGAATCTCCACGTAAAAT 59.458 34.615 10.16 0.00 0.00 1.82
4510 7914 5.877564 TGTATGCATGAATCTCCACGTAAAA 59.122 36.000 10.16 0.00 0.00 1.52
4511 7915 5.423886 TGTATGCATGAATCTCCACGTAAA 58.576 37.500 10.16 0.00 0.00 2.01
4512 7916 5.017294 TGTATGCATGAATCTCCACGTAA 57.983 39.130 10.16 0.00 0.00 3.18
4513 7917 4.664150 TGTATGCATGAATCTCCACGTA 57.336 40.909 10.16 0.00 0.00 3.57
4514 7918 3.541996 TGTATGCATGAATCTCCACGT 57.458 42.857 10.16 0.00 0.00 4.49
4515 7919 5.428496 AAATGTATGCATGAATCTCCACG 57.572 39.130 10.16 0.00 35.15 4.94
4516 7920 6.798482 TGAAAATGTATGCATGAATCTCCAC 58.202 36.000 10.16 0.00 35.15 4.02
4517 7921 7.591421 ATGAAAATGTATGCATGAATCTCCA 57.409 32.000 10.16 0.57 35.15 3.86
4518 7922 8.882415 AAATGAAAATGTATGCATGAATCTCC 57.118 30.769 10.16 0.00 35.15 3.71
4527 7931 9.995003 AGGTAAAGAAAAATGAAAATGTATGCA 57.005 25.926 0.00 0.00 0.00 3.96
4536 7940 9.816354 CTCCTGAAAAGGTAAAGAAAAATGAAA 57.184 29.630 0.00 0.00 0.00 2.69
4537 7941 8.977412 ACTCCTGAAAAGGTAAAGAAAAATGAA 58.023 29.630 0.00 0.00 0.00 2.57
4538 7942 8.533569 ACTCCTGAAAAGGTAAAGAAAAATGA 57.466 30.769 0.00 0.00 0.00 2.57
4539 7943 9.899226 CTACTCCTGAAAAGGTAAAGAAAAATG 57.101 33.333 0.00 0.00 0.00 2.32
4540 7944 9.642343 ACTACTCCTGAAAAGGTAAAGAAAAAT 57.358 29.630 0.00 0.00 0.00 1.82
4541 7945 9.470399 AACTACTCCTGAAAAGGTAAAGAAAAA 57.530 29.630 0.00 0.00 0.00 1.94
4542 7946 9.117183 GAACTACTCCTGAAAAGGTAAAGAAAA 57.883 33.333 0.00 0.00 0.00 2.29
4543 7947 7.440255 CGAACTACTCCTGAAAAGGTAAAGAAA 59.560 37.037 0.00 0.00 0.00 2.52
4544 7948 6.927381 CGAACTACTCCTGAAAAGGTAAAGAA 59.073 38.462 0.00 0.00 0.00 2.52
4545 7949 6.266103 TCGAACTACTCCTGAAAAGGTAAAGA 59.734 38.462 0.00 0.00 0.00 2.52
4546 7950 6.453092 TCGAACTACTCCTGAAAAGGTAAAG 58.547 40.000 0.00 0.00 0.00 1.85
4547 7951 6.409524 TCGAACTACTCCTGAAAAGGTAAA 57.590 37.500 0.00 0.00 0.00 2.01
4548 7952 6.600882 ATCGAACTACTCCTGAAAAGGTAA 57.399 37.500 0.00 0.00 0.00 2.85
4549 7953 6.209986 TCAATCGAACTACTCCTGAAAAGGTA 59.790 38.462 0.00 0.00 0.00 3.08
4550 7954 5.011738 TCAATCGAACTACTCCTGAAAAGGT 59.988 40.000 0.00 0.00 0.00 3.50
4551 7955 5.479306 TCAATCGAACTACTCCTGAAAAGG 58.521 41.667 0.00 0.00 0.00 3.11
4552 7956 6.159988 ACTCAATCGAACTACTCCTGAAAAG 58.840 40.000 0.00 0.00 0.00 2.27
4553 7957 6.097915 ACTCAATCGAACTACTCCTGAAAA 57.902 37.500 0.00 0.00 0.00 2.29
4554 7958 5.243060 TGACTCAATCGAACTACTCCTGAAA 59.757 40.000 0.00 0.00 0.00 2.69
4555 7959 4.765339 TGACTCAATCGAACTACTCCTGAA 59.235 41.667 0.00 0.00 0.00 3.02
4556 7960 4.156190 GTGACTCAATCGAACTACTCCTGA 59.844 45.833 0.00 0.00 0.00 3.86
4557 7961 4.156922 AGTGACTCAATCGAACTACTCCTG 59.843 45.833 0.00 0.00 0.00 3.86
4558 7962 4.337145 AGTGACTCAATCGAACTACTCCT 58.663 43.478 0.00 0.00 0.00 3.69
4559 7963 4.705337 AGTGACTCAATCGAACTACTCC 57.295 45.455 0.00 0.00 0.00 3.85
4560 7964 7.074507 TCTAAGTGACTCAATCGAACTACTC 57.925 40.000 0.00 0.00 0.00 2.59
4561 7965 7.121463 ACATCTAAGTGACTCAATCGAACTACT 59.879 37.037 0.00 0.00 0.00 2.57
4562 7966 7.219154 CACATCTAAGTGACTCAATCGAACTAC 59.781 40.741 0.00 0.00 42.05 2.73
4563 7967 7.251281 CACATCTAAGTGACTCAATCGAACTA 58.749 38.462 0.00 0.00 42.05 2.24
4564 7968 6.096036 CACATCTAAGTGACTCAATCGAACT 58.904 40.000 0.00 0.00 42.05 3.01
4565 7969 5.220303 GCACATCTAAGTGACTCAATCGAAC 60.220 44.000 0.00 0.00 42.05 3.95
4566 7970 4.864806 GCACATCTAAGTGACTCAATCGAA 59.135 41.667 0.00 0.00 42.05 3.71
4567 7971 4.082245 TGCACATCTAAGTGACTCAATCGA 60.082 41.667 0.00 0.00 42.05 3.59
4568 7972 4.176271 TGCACATCTAAGTGACTCAATCG 58.824 43.478 0.00 0.00 42.05 3.34
4569 7973 6.674694 ATTGCACATCTAAGTGACTCAATC 57.325 37.500 0.00 0.00 42.05 2.67
4570 7974 7.607607 TGTTATTGCACATCTAAGTGACTCAAT 59.392 33.333 0.00 0.00 42.05 2.57
4571 7975 6.934083 TGTTATTGCACATCTAAGTGACTCAA 59.066 34.615 0.00 0.00 42.05 3.02
4572 7976 6.368791 GTGTTATTGCACATCTAAGTGACTCA 59.631 38.462 0.00 0.00 42.05 3.41
4573 7977 6.368791 TGTGTTATTGCACATCTAAGTGACTC 59.631 38.462 0.00 0.00 43.54 3.36
4574 7978 6.230472 TGTGTTATTGCACATCTAAGTGACT 58.770 36.000 0.00 0.00 43.54 3.41
4575 7979 6.480524 TGTGTTATTGCACATCTAAGTGAC 57.519 37.500 0.00 0.00 43.54 3.67
4586 7990 5.854835 CGCATCTAAATGTGTTATTGCAC 57.145 39.130 0.00 0.00 38.36 4.57
4723 8127 0.949105 CCGTTTTCAGTGGAGACCGG 60.949 60.000 0.00 0.00 0.00 5.28
4725 8129 1.509703 GTCCGTTTTCAGTGGAGACC 58.490 55.000 0.00 0.00 31.04 3.85
4727 8131 1.420430 AGGTCCGTTTTCAGTGGAGA 58.580 50.000 0.00 0.00 31.04 3.71
4732 8136 2.430248 ACCAAAGGTCCGTTTTCAGT 57.570 45.000 0.00 0.00 0.00 3.41
4734 8138 4.153673 TCTTACCAAAGGTCCGTTTTCA 57.846 40.909 0.00 0.00 37.09 2.69
4735 8139 4.142966 CGATCTTACCAAAGGTCCGTTTTC 60.143 45.833 0.00 0.00 39.34 2.29
4741 8145 4.320870 TGTTTCGATCTTACCAAAGGTCC 58.679 43.478 0.00 0.00 39.34 4.46
4762 8166 3.132925 TCACACATATGCCATGTCGATG 58.867 45.455 1.58 0.00 0.00 3.84
4763 8167 3.473923 TCACACATATGCCATGTCGAT 57.526 42.857 1.58 0.00 0.00 3.59
4772 8176 2.300433 TCAGGCCATTCACACATATGC 58.700 47.619 5.01 0.00 0.00 3.14
4773 8177 4.987408 TTTCAGGCCATTCACACATATG 57.013 40.909 5.01 0.00 0.00 1.78
4779 8183 4.842531 TCTCTATTTCAGGCCATTCACA 57.157 40.909 5.01 0.00 0.00 3.58
4780 8184 5.431765 TCTTCTCTATTTCAGGCCATTCAC 58.568 41.667 5.01 0.00 0.00 3.18
4781 8185 5.698741 TCTTCTCTATTTCAGGCCATTCA 57.301 39.130 5.01 0.00 0.00 2.57
4787 8191 6.262720 AGCAATTGATCTTCTCTATTTCAGGC 59.737 38.462 10.34 0.00 28.48 4.85
4795 8199 4.498177 CGACCGAGCAATTGATCTTCTCTA 60.498 45.833 20.55 0.00 0.00 2.43
4796 8200 3.736433 CGACCGAGCAATTGATCTTCTCT 60.736 47.826 20.55 0.72 0.00 3.10
4797 8201 2.537625 CGACCGAGCAATTGATCTTCTC 59.462 50.000 20.55 10.39 0.00 2.87
4798 8202 2.544685 CGACCGAGCAATTGATCTTCT 58.455 47.619 20.55 2.20 0.00 2.85
4799 8203 1.594862 CCGACCGAGCAATTGATCTTC 59.405 52.381 20.55 15.02 0.00 2.87
4800 8204 1.066143 ACCGACCGAGCAATTGATCTT 60.066 47.619 20.55 8.14 0.00 2.40
4801 8205 0.537188 ACCGACCGAGCAATTGATCT 59.463 50.000 20.55 3.62 0.00 2.75
4802 8206 1.327764 GAACCGACCGAGCAATTGATC 59.672 52.381 13.73 13.73 0.00 2.92
4803 8207 1.066143 AGAACCGACCGAGCAATTGAT 60.066 47.619 10.34 1.34 0.00 2.57
4804 8208 0.320374 AGAACCGACCGAGCAATTGA 59.680 50.000 10.34 0.00 0.00 2.57
4808 8289 0.894184 AGAGAGAACCGACCGAGCAA 60.894 55.000 0.00 0.00 0.00 3.91
4814 8295 0.597072 ACGAACAGAGAGAACCGACC 59.403 55.000 0.00 0.00 0.00 4.79
4815 8296 1.536331 AGACGAACAGAGAGAACCGAC 59.464 52.381 0.00 0.00 0.00 4.79
4818 8299 3.644884 TTCAGACGAACAGAGAGAACC 57.355 47.619 0.00 0.00 0.00 3.62
4831 8312 6.021596 GTGGTATAAACTGCAAATTCAGACG 58.978 40.000 1.40 0.00 37.51 4.18
4842 8323 4.380550 GCCTTCTTTGGTGGTATAAACTGC 60.381 45.833 0.00 0.00 0.00 4.40
4843 8324 4.764823 TGCCTTCTTTGGTGGTATAAACTG 59.235 41.667 0.00 0.00 0.00 3.16
4844 8325 4.993028 TGCCTTCTTTGGTGGTATAAACT 58.007 39.130 0.00 0.00 0.00 2.66
4845 8326 4.765339 ACTGCCTTCTTTGGTGGTATAAAC 59.235 41.667 0.00 0.00 0.00 2.01
4846 8327 4.993028 ACTGCCTTCTTTGGTGGTATAAA 58.007 39.130 0.00 0.00 0.00 1.40
4857 8338 6.870439 GCTTGAATTATCAAACTGCCTTCTTT 59.130 34.615 0.00 0.00 44.64 2.52
4858 8339 6.393171 GCTTGAATTATCAAACTGCCTTCTT 58.607 36.000 0.00 0.00 44.64 2.52
4881 8362 1.429148 CTTATGTTCCCAGCCGTCGC 61.429 60.000 0.00 0.00 0.00 5.19
4887 8368 5.593679 TCAGTAGTACTTATGTTCCCAGC 57.406 43.478 0.00 0.00 0.00 4.85
4902 8383 9.331282 GCCTGAAGAATAAATGTTATCAGTAGT 57.669 33.333 0.00 0.00 32.86 2.73
4903 8384 8.491152 CGCCTGAAGAATAAATGTTATCAGTAG 58.509 37.037 0.00 0.00 32.86 2.57
4904 8385 8.201464 TCGCCTGAAGAATAAATGTTATCAGTA 58.799 33.333 0.00 0.00 32.86 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.