Multiple sequence alignment - TraesCS3A01G086800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G086800 chr3A 100.000 4822 0 0 1 4822 56145547 56140726 0.000000e+00 8905.0
1 TraesCS3A01G086800 chr3D 96.464 1923 61 4 1305 3223 43974995 43973076 0.000000e+00 3168.0
2 TraesCS3A01G086800 chr3D 90.754 1406 83 15 3 1380 43976270 43974884 0.000000e+00 1832.0
3 TraesCS3A01G086800 chr3D 93.142 802 48 5 3211 4011 43973053 43972258 0.000000e+00 1170.0
4 TraesCS3A01G086800 chr3D 86.667 315 30 7 4034 4343 43972140 43971833 5.980000e-89 339.0
5 TraesCS3A01G086800 chr3B 94.923 1871 80 10 2094 3958 68883250 68881389 0.000000e+00 2915.0
6 TraesCS3A01G086800 chr3B 92.308 1339 73 14 3 1326 68885366 68884043 0.000000e+00 1875.0
7 TraesCS3A01G086800 chr3B 96.376 745 20 3 1364 2108 68884098 68883361 0.000000e+00 1219.0
8 TraesCS3A01G086800 chr3B 85.153 229 21 6 4041 4266 68881138 68880920 6.280000e-54 222.0
9 TraesCS3A01G086800 chr3B 83.265 245 26 7 4406 4650 68880595 68880366 1.360000e-50 211.0
10 TraesCS3A01G086800 chr3B 94.545 55 3 0 3957 4011 68881307 68881253 8.600000e-13 86.1
11 TraesCS3A01G086800 chr5D 81.450 1186 162 43 2678 3846 223649562 223648418 0.000000e+00 918.0
12 TraesCS3A01G086800 chr5D 83.292 808 98 19 1688 2465 223650982 223650182 0.000000e+00 710.0
13 TraesCS3A01G086800 chr5D 88.542 96 8 3 1552 1647 223651075 223650983 3.940000e-21 113.0
14 TraesCS3A01G086800 chr5B 80.481 1040 137 37 1685 2673 249072190 249073214 0.000000e+00 736.0
15 TraesCS3A01G086800 chr5B 86.085 539 56 14 2675 3202 249073518 249074048 3.260000e-156 562.0
16 TraesCS3A01G086800 chr5B 84.725 491 62 13 3316 3799 249074149 249074633 3.380000e-131 479.0
17 TraesCS3A01G086800 chr5B 92.683 82 6 0 1566 1647 249072111 249072192 8.480000e-23 119.0
18 TraesCS3A01G086800 chr5A 80.254 1023 133 35 1705 2676 296304666 296303662 0.000000e+00 706.0
19 TraesCS3A01G086800 chr5A 86.004 543 55 15 2674 3202 296303356 296302821 3.260000e-156 562.0
20 TraesCS3A01G086800 chr5A 84.015 538 70 15 3299 3830 296302737 296302210 2.000000e-138 503.0
21 TraesCS3A01G086800 chr5A 87.568 185 21 2 1378 1561 296304960 296304777 3.780000e-51 213.0
22 TraesCS3A01G086800 chr7A 99.259 135 1 0 4656 4790 573432983 573432849 1.340000e-60 244.0
23 TraesCS3A01G086800 chr7A 98.529 136 2 0 4655 4790 423560516 423560651 1.730000e-59 241.0
24 TraesCS3A01G086800 chr7A 97.059 136 3 1 4655 4790 232317115 232317249 1.350000e-55 228.0
25 TraesCS3A01G086800 chr7A 85.430 151 7 5 4655 4790 522500784 522500634 5.030000e-30 143.0
26 TraesCS3A01G086800 chr2A 97.826 138 2 1 4654 4790 179294506 179294643 2.240000e-58 237.0
27 TraesCS3A01G086800 chr6B 96.842 95 3 0 4657 4751 118960111 118960205 5.000000e-35 159.0
28 TraesCS3A01G086800 chr6B 96.842 95 3 0 4657 4751 439389902 439389808 5.000000e-35 159.0
29 TraesCS3A01G086800 chr4A 95.050 101 4 1 4651 4751 658762421 658762322 1.800000e-34 158.0
30 TraesCS3A01G086800 chr4A 95.050 101 4 1 4651 4751 658779914 658779815 1.800000e-34 158.0
31 TraesCS3A01G086800 chr4A 95.050 101 4 1 4651 4751 658807540 658807441 1.800000e-34 158.0
32 TraesCS3A01G086800 chr4A 100.000 41 0 0 4750 4790 658762295 658762255 5.180000e-10 76.8
33 TraesCS3A01G086800 chr4A 100.000 41 0 0 4750 4790 658779788 658779748 5.180000e-10 76.8
34 TraesCS3A01G086800 chr2D 96.386 83 3 0 4656 4738 387900938 387901020 2.340000e-28 137.0
35 TraesCS3A01G086800 chr1A 84.667 150 8 6 4656 4790 76489021 76488872 8.420000e-28 135.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G086800 chr3A 56140726 56145547 4821 True 8905.000000 8905 100.00000 1 4822 1 chr3A.!!$R1 4821
1 TraesCS3A01G086800 chr3D 43971833 43976270 4437 True 1627.250000 3168 91.75675 3 4343 4 chr3D.!!$R1 4340
2 TraesCS3A01G086800 chr3B 68880366 68885366 5000 True 1088.016667 2915 91.09500 3 4650 6 chr3B.!!$R1 4647
3 TraesCS3A01G086800 chr5D 223648418 223651075 2657 True 580.333333 918 84.42800 1552 3846 3 chr5D.!!$R1 2294
4 TraesCS3A01G086800 chr5B 249072111 249074633 2522 False 474.000000 736 85.99350 1566 3799 4 chr5B.!!$F1 2233
5 TraesCS3A01G086800 chr5A 296302210 296304960 2750 True 496.000000 706 84.46025 1378 3830 4 chr5A.!!$R1 2452

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
615 643 0.246360 TGCACCAGTGAGTACGATGG 59.754 55.0 0.99 7.02 38.83 3.51 F
1328 1366 0.316841 GGATGACGATGAGGAGAGCC 59.683 60.0 0.00 0.00 0.00 4.70 F
2212 2437 0.451783 GCAAAGGGTGCGAATGGTAG 59.548 55.0 0.00 0.00 45.10 3.18 F
3275 3973 0.534203 CGGGGATATTTCCACCACCG 60.534 60.0 4.48 4.15 43.15 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2303 2528 0.875728 CGACCACTCGTCACTCTCTT 59.124 55.000 0.00 0.0 42.07 2.85 R
3314 4012 0.034059 GGGGTGAGCATATGAGACCG 59.966 60.000 6.97 0.0 0.00 4.79 R
3507 4209 1.653115 GCAGCAGCATGGCTCATAC 59.347 57.895 0.00 0.0 43.68 2.39 R
4745 5817 0.034896 CCTGGGACGTGCACTAACTT 59.965 55.000 16.19 0.0 0.00 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.230508 CCTATGCGCGGAATAGGAAGTA 59.769 50.000 21.91 2.44 46.66 2.24
37 38 2.025898 GAAGTACCCTCTCCTTCCTCG 58.974 57.143 0.00 0.00 30.67 4.63
40 41 2.905935 TACCCTCTCCTTCCTCGGCG 62.906 65.000 0.00 0.00 0.00 6.46
159 160 2.098233 CGTATTCAACCGCGGCAGT 61.098 57.895 28.58 8.14 0.00 4.40
181 182 1.001974 ACTCAGCAATCAGGCAACGTA 59.998 47.619 0.00 0.00 46.39 3.57
201 202 0.829333 AGTCCGCAGCTCATCTCATT 59.171 50.000 0.00 0.00 0.00 2.57
204 205 1.483827 TCCGCAGCTCATCTCATTCTT 59.516 47.619 0.00 0.00 0.00 2.52
205 206 1.598132 CCGCAGCTCATCTCATTCTTG 59.402 52.381 0.00 0.00 0.00 3.02
206 207 1.598132 CGCAGCTCATCTCATTCTTGG 59.402 52.381 0.00 0.00 0.00 3.61
213 214 3.614092 TCATCTCATTCTTGGCCTCAAC 58.386 45.455 3.32 0.00 0.00 3.18
228 229 2.486191 CCTCAACTCCTTGTTCAGCTGT 60.486 50.000 14.67 0.00 36.63 4.40
229 230 2.805099 CTCAACTCCTTGTTCAGCTGTC 59.195 50.000 14.67 9.03 36.63 3.51
230 231 1.876156 CAACTCCTTGTTCAGCTGTCC 59.124 52.381 14.67 6.02 36.63 4.02
231 232 0.398318 ACTCCTTGTTCAGCTGTCCC 59.602 55.000 14.67 3.38 0.00 4.46
232 233 0.689623 CTCCTTGTTCAGCTGTCCCT 59.310 55.000 14.67 0.00 0.00 4.20
233 234 0.397941 TCCTTGTTCAGCTGTCCCTG 59.602 55.000 14.67 2.90 0.00 4.45
234 235 0.607489 CCTTGTTCAGCTGTCCCTGG 60.607 60.000 14.67 8.37 33.64 4.45
235 236 1.228245 TTGTTCAGCTGTCCCTGGC 60.228 57.895 14.67 0.00 33.64 4.85
236 237 1.708993 TTGTTCAGCTGTCCCTGGCT 61.709 55.000 14.67 0.00 39.60 4.75
237 238 1.376553 GTTCAGCTGTCCCTGGCTC 60.377 63.158 14.67 0.00 36.59 4.70
251 252 0.545309 TGGCTCCCTGCACTAGTTCT 60.545 55.000 0.00 0.00 45.15 3.01
311 312 2.420269 CCGTGGAGACTCTAGCAGTAGA 60.420 54.545 1.74 0.00 34.41 2.59
365 376 2.044650 GGATGGAGCTTGCAGGCA 60.045 61.111 23.85 2.20 34.17 4.75
397 408 4.599041 ACTGCTTGATAAAATGCCCACTA 58.401 39.130 0.00 0.00 0.00 2.74
399 410 3.376859 TGCTTGATAAAATGCCCACTACG 59.623 43.478 0.00 0.00 0.00 3.51
405 416 0.392998 AAATGCCCACTACGCAGAGG 60.393 55.000 0.00 0.00 40.15 3.69
452 478 1.898472 TGGCAAGTGAGGAGAAGAGAG 59.102 52.381 0.00 0.00 0.00 3.20
460 486 2.110899 TGAGGAGAAGAGAGAACCCACT 59.889 50.000 0.00 0.00 0.00 4.00
462 488 3.169908 AGGAGAAGAGAGAACCCACTTC 58.830 50.000 0.00 0.00 38.96 3.01
477 503 2.902846 TTCCACGTGGCCGGTTTG 60.903 61.111 30.25 3.58 38.78 2.93
478 504 3.700831 TTCCACGTGGCCGGTTTGT 62.701 57.895 30.25 0.00 38.78 2.83
480 506 2.590575 CACGTGGCCGGTTTGTCT 60.591 61.111 7.95 0.00 38.78 3.41
575 603 3.557264 GGATTGGAGGTCGACTTTCAGTT 60.557 47.826 16.46 4.36 0.00 3.16
576 604 3.553828 TTGGAGGTCGACTTTCAGTTT 57.446 42.857 16.46 0.00 0.00 2.66
599 627 0.753867 TGAGGGACGTACTGTTTGCA 59.246 50.000 0.00 0.00 0.00 4.08
603 631 0.865769 GGACGTACTGTTTGCACCAG 59.134 55.000 10.32 10.32 36.01 4.00
615 643 0.246360 TGCACCAGTGAGTACGATGG 59.754 55.000 0.99 7.02 38.83 3.51
666 694 7.818642 TGGGGATTGTTAAGTTGTAAATAACG 58.181 34.615 0.00 0.00 35.73 3.18
775 804 2.984562 TCTGAAACAGTGTGTGCTCAA 58.015 42.857 0.00 0.00 32.61 3.02
786 815 2.158827 TGTGTGCTCAATGTACTGGTGT 60.159 45.455 0.00 0.00 32.31 4.16
1011 1041 1.668419 GATACAAGATGGCGCCACTT 58.332 50.000 35.50 30.58 0.00 3.16
1082 1112 0.674581 TCCAATTCAGGCAGCGACTG 60.675 55.000 5.20 5.20 40.64 3.51
1135 1165 1.622811 AGGACAGCTTCTTCTCCACAG 59.377 52.381 0.00 0.00 0.00 3.66
1253 1291 5.105554 TGTTTTGTGCCTATCTCTCTCTCTC 60.106 44.000 0.00 0.00 0.00 3.20
1254 1292 4.518278 TTGTGCCTATCTCTCTCTCTCT 57.482 45.455 0.00 0.00 0.00 3.10
1255 1293 4.085357 TGTGCCTATCTCTCTCTCTCTC 57.915 50.000 0.00 0.00 0.00 3.20
1256 1294 3.716353 TGTGCCTATCTCTCTCTCTCTCT 59.284 47.826 0.00 0.00 0.00 3.10
1257 1295 4.202357 TGTGCCTATCTCTCTCTCTCTCTC 60.202 50.000 0.00 0.00 0.00 3.20
1258 1296 4.040952 GTGCCTATCTCTCTCTCTCTCTCT 59.959 50.000 0.00 0.00 0.00 3.10
1317 1355 3.924576 TCCATGAGGAGGATGACGA 57.075 52.632 0.00 0.00 39.61 4.20
1318 1356 2.388526 TCCATGAGGAGGATGACGAT 57.611 50.000 0.00 0.00 39.61 3.73
1319 1357 1.966354 TCCATGAGGAGGATGACGATG 59.034 52.381 0.00 0.00 39.61 3.84
1320 1358 1.966354 CCATGAGGAGGATGACGATGA 59.034 52.381 0.00 0.00 36.89 2.92
1321 1359 2.029200 CCATGAGGAGGATGACGATGAG 60.029 54.545 0.00 0.00 36.89 2.90
1322 1360 1.697284 TGAGGAGGATGACGATGAGG 58.303 55.000 0.00 0.00 0.00 3.86
1323 1361 1.215423 TGAGGAGGATGACGATGAGGA 59.785 52.381 0.00 0.00 0.00 3.71
1324 1362 1.885887 GAGGAGGATGACGATGAGGAG 59.114 57.143 0.00 0.00 0.00 3.69
1325 1363 1.496857 AGGAGGATGACGATGAGGAGA 59.503 52.381 0.00 0.00 0.00 3.71
1326 1364 1.885887 GGAGGATGACGATGAGGAGAG 59.114 57.143 0.00 0.00 0.00 3.20
1327 1365 1.269448 GAGGATGACGATGAGGAGAGC 59.731 57.143 0.00 0.00 0.00 4.09
1328 1366 0.316841 GGATGACGATGAGGAGAGCC 59.683 60.000 0.00 0.00 0.00 4.70
1529 1567 7.400599 TCACACGGTTTACTATAGAATCTGT 57.599 36.000 6.78 4.62 0.00 3.41
1679 1746 5.704978 TGTGCTTTGCATAACATCTACTCAA 59.295 36.000 0.00 0.00 41.91 3.02
1726 1800 9.113838 CAGCTATCCTTTACATTCAGTGTTTAT 57.886 33.333 0.00 0.00 42.29 1.40
2051 2149 1.364626 CTCTCGGTTGCATGCTGGAC 61.365 60.000 20.33 14.18 0.00 4.02
2212 2437 0.451783 GCAAAGGGTGCGAATGGTAG 59.548 55.000 0.00 0.00 45.10 3.18
2303 2528 2.768253 ACATTGCCTGACTCGAATGA 57.232 45.000 0.00 0.00 31.53 2.57
2321 2546 1.880675 TGAAGAGAGTGACGAGTGGTC 59.119 52.381 0.00 0.00 46.27 4.02
2450 2675 7.749570 CAGAAGATCTTTTGTTAATCAGCACTG 59.250 37.037 16.04 7.11 0.00 3.66
2784 3434 2.159254 GCACTGAAAGGAAAGTTGCACA 60.159 45.455 0.00 0.00 39.30 4.57
2858 3511 1.215423 GTGGGACAGGCCTGGATTTAT 59.785 52.381 35.42 14.69 41.80 1.40
3043 3704 3.310774 CCACCAGTCATATTTCTGCTTCG 59.689 47.826 0.00 0.00 0.00 3.79
3165 3828 3.808218 TTCCAAGCTTGCCGGCCTT 62.808 57.895 26.77 17.55 0.00 4.35
3275 3973 0.534203 CGGGGATATTTCCACCACCG 60.534 60.000 4.48 4.15 43.15 4.94
3294 3992 9.622004 CACCACCGATCGAATTATATATATACC 57.378 37.037 18.66 0.00 0.00 2.73
3314 4012 1.927174 CGTATGTCTAGTGCACTTGCC 59.073 52.381 27.06 14.06 41.18 4.52
3383 4081 5.586643 GGAAGGTGATCCTGAACTTATTGAC 59.413 44.000 0.00 0.00 44.35 3.18
3436 4134 4.336101 GAGTTTCTCGAGTCGTGTGATAG 58.664 47.826 13.13 1.11 0.00 2.08
3526 4228 1.527611 TATGAGCCATGCTGCTGCC 60.528 57.895 13.47 0.00 42.95 4.85
3629 4331 6.463995 AGAGCAGAAAGATAAGGTAGAGTG 57.536 41.667 0.00 0.00 0.00 3.51
3646 4348 1.102978 GTGACTTTGGGTGCAGTTGT 58.897 50.000 0.00 0.00 0.00 3.32
3790 4495 5.578776 ACTGTTCGAGAATTTGTTTGGAAC 58.421 37.500 0.00 0.00 34.45 3.62
3823 4528 2.564553 AAGTCAGCCGCGGTCTGATC 62.565 60.000 36.97 30.66 41.93 2.92
3870 4575 1.067142 AGCTAGTTTTCGCGTGATGGA 60.067 47.619 5.77 0.00 0.00 3.41
3876 4581 1.934589 TTTCGCGTGATGGATGGTAG 58.065 50.000 5.77 0.00 0.00 3.18
3922 4627 2.356665 AACTTGTACCCACACATGCA 57.643 45.000 0.00 0.00 33.30 3.96
3947 4652 4.217767 GGCCTATGTATGACGATGAGTGTA 59.782 45.833 0.00 0.00 0.00 2.90
3987 4775 7.365497 TGATCTGATTAGTAAGATGCCTTCA 57.635 36.000 0.00 0.00 33.26 3.02
3994 4782 9.113838 TGATTAGTAAGATGCCTTCAAATTCTC 57.886 33.333 0.00 0.00 33.94 2.87
3995 4783 9.336171 GATTAGTAAGATGCCTTCAAATTCTCT 57.664 33.333 0.00 0.00 33.94 3.10
4022 4810 9.927668 ATCTGTTAAACATAAATTCAAACAGGG 57.072 29.630 11.19 0.00 41.51 4.45
4024 4812 9.410556 CTGTTAAACATAAATTCAAACAGGGAG 57.589 33.333 0.00 0.00 38.94 4.30
4025 4813 7.870445 TGTTAAACATAAATTCAAACAGGGAGC 59.130 33.333 0.00 0.00 0.00 4.70
4026 4814 6.670695 AAACATAAATTCAAACAGGGAGCT 57.329 33.333 0.00 0.00 0.00 4.09
4027 4815 5.904362 ACATAAATTCAAACAGGGAGCTC 57.096 39.130 4.71 4.71 0.00 4.09
4030 4818 4.861102 AAATTCAAACAGGGAGCTCAAG 57.139 40.909 17.19 6.90 0.00 3.02
4031 4819 3.795688 ATTCAAACAGGGAGCTCAAGA 57.204 42.857 17.19 0.00 0.00 3.02
4032 4820 3.576078 TTCAAACAGGGAGCTCAAGAA 57.424 42.857 17.19 5.46 0.00 2.52
4039 4922 4.583871 ACAGGGAGCTCAAGAAATTGTAG 58.416 43.478 17.19 0.00 0.00 2.74
4059 4942 7.680442 TGTAGTCTGCAAAGCAATAAACATA 57.320 32.000 0.00 0.00 38.41 2.29
4090 4973 7.065085 CCCTCTTATCTGAGTTGTGTAATGTTG 59.935 40.741 0.00 0.00 32.50 3.33
4097 4981 8.846943 TCTGAGTTGTGTAATGTTGACATAAT 57.153 30.769 0.00 0.00 35.10 1.28
4152 5037 6.702282 GGTGTATGTCTCTTATCTAAGCAACC 59.298 42.308 0.00 0.00 33.40 3.77
4186 5073 7.823745 AACAACATCATGGGGATTATTACTC 57.176 36.000 0.00 0.00 32.57 2.59
4355 5243 9.555727 TGTTTGCTATAAACTTAGTCAAACTCT 57.444 29.630 18.83 0.00 41.08 3.24
4357 5245 9.772973 TTTGCTATAAACTTAGTCAAACTCTGA 57.227 29.630 0.00 0.00 0.00 3.27
4358 5246 9.772973 TTGCTATAAACTTAGTCAAACTCTGAA 57.227 29.630 0.00 0.00 35.22 3.02
4360 5248 9.425577 GCTATAAACTTAGTCAAACTCTGAAGT 57.574 33.333 0.00 0.00 35.22 3.01
4374 5262 7.681939 AACTCTGAAGTTTGACTTACAACAA 57.318 32.000 0.00 0.00 43.28 2.83
4375 5263 7.073342 ACTCTGAAGTTTGACTTACAACAAC 57.927 36.000 0.00 0.00 38.80 3.32
4376 5264 6.653320 ACTCTGAAGTTTGACTTACAACAACA 59.347 34.615 0.00 0.00 38.80 3.33
4378 5266 7.302524 TCTGAAGTTTGACTTACAACAACAAC 58.697 34.615 0.00 0.00 38.80 3.32
4379 5267 6.971602 TGAAGTTTGACTTACAACAACAACA 58.028 32.000 0.00 0.00 38.80 3.33
4380 5268 7.426410 TGAAGTTTGACTTACAACAACAACAA 58.574 30.769 0.00 0.00 38.80 2.83
4383 5271 8.649973 AGTTTGACTTACAACAACAACAAAAA 57.350 26.923 0.00 0.00 38.29 1.94
4440 5512 3.589988 GAGTATATTCTGTCATGGGCGG 58.410 50.000 0.00 0.00 0.00 6.13
4442 5514 4.157246 AGTATATTCTGTCATGGGCGGTA 58.843 43.478 0.00 0.00 0.00 4.02
4478 5550 1.642762 AGGCCAAAAGGGTCAGATCAT 59.357 47.619 5.01 0.00 46.80 2.45
4485 5557 5.996513 CCAAAAGGGTCAGATCATGAGATAG 59.003 44.000 0.09 0.00 39.07 2.08
4492 5564 7.615365 AGGGTCAGATCATGAGATAGTCTTATC 59.385 40.741 0.09 0.00 39.07 1.75
4497 5569 3.440522 TCATGAGATAGTCTTATCGGCCG 59.559 47.826 22.12 22.12 40.53 6.13
4498 5570 1.540267 TGAGATAGTCTTATCGGCCGC 59.460 52.381 23.51 4.91 40.53 6.53
4499 5571 0.889306 AGATAGTCTTATCGGCCGCC 59.111 55.000 23.51 0.00 40.53 6.13
4515 5587 3.053896 CCGGCGGTGGGAAGAAAC 61.054 66.667 19.97 0.00 0.00 2.78
4534 5606 2.940158 ACCGTTGTAGGCTTTCCTTTT 58.060 42.857 0.00 0.00 40.66 2.27
4541 5613 3.831911 TGTAGGCTTTCCTTTTCCCAATG 59.168 43.478 0.00 0.00 40.66 2.82
4544 5616 2.224499 GGCTTTCCTTTTCCCAATGCAA 60.224 45.455 0.00 0.00 0.00 4.08
4545 5617 3.475575 GCTTTCCTTTTCCCAATGCAAA 58.524 40.909 0.00 0.00 0.00 3.68
4546 5618 4.074259 GCTTTCCTTTTCCCAATGCAAAT 58.926 39.130 0.00 0.00 0.00 2.32
4547 5619 4.083164 GCTTTCCTTTTCCCAATGCAAATG 60.083 41.667 0.00 0.00 0.00 2.32
4548 5620 4.703379 TTCCTTTTCCCAATGCAAATGT 57.297 36.364 0.00 0.00 0.00 2.71
4549 5621 4.005487 TCCTTTTCCCAATGCAAATGTG 57.995 40.909 0.00 0.00 0.00 3.21
4564 5636 0.319900 ATGTGCAGTGTCGTCCTCAC 60.320 55.000 0.00 0.00 36.22 3.51
4576 5648 2.158740 TCGTCCTCACCAAATCCAAACA 60.159 45.455 0.00 0.00 0.00 2.83
4582 5654 1.273327 CACCAAATCCAAACAGGGAGC 59.727 52.381 0.00 0.00 41.08 4.70
4584 5656 1.821136 CCAAATCCAAACAGGGAGCTC 59.179 52.381 4.71 4.71 41.08 4.09
4585 5657 2.517959 CAAATCCAAACAGGGAGCTCA 58.482 47.619 17.19 0.00 41.08 4.26
4602 5674 5.121298 GGAGCTCAAGAAATGCAAATTTTCC 59.879 40.000 17.19 0.00 34.34 3.13
4603 5675 5.613329 AGCTCAAGAAATGCAAATTTTCCA 58.387 33.333 7.49 0.00 34.34 3.53
4604 5676 5.467735 AGCTCAAGAAATGCAAATTTTCCAC 59.532 36.000 7.49 0.00 34.34 4.02
4605 5677 5.236911 GCTCAAGAAATGCAAATTTTCCACA 59.763 36.000 7.49 0.00 34.34 4.17
4606 5678 6.565247 GCTCAAGAAATGCAAATTTTCCACAG 60.565 38.462 7.49 3.29 34.34 3.66
4607 5679 5.236911 TCAAGAAATGCAAATTTTCCACAGC 59.763 36.000 7.49 0.00 34.34 4.40
4611 5683 5.831702 AATGCAAATTTTCCACAGCAAAA 57.168 30.435 3.13 0.00 35.45 2.44
4621 5693 0.239082 CACAGCAAAAGAGCGCATGA 59.761 50.000 11.47 0.00 40.15 3.07
4646 5718 3.317993 CGGTCAGTTGTCATTTTCCCTTT 59.682 43.478 0.00 0.00 0.00 3.11
4648 5720 4.262036 GGTCAGTTGTCATTTTCCCTTTCC 60.262 45.833 0.00 0.00 0.00 3.13
4649 5721 4.340950 GTCAGTTGTCATTTTCCCTTTCCA 59.659 41.667 0.00 0.00 0.00 3.53
4650 5722 4.584325 TCAGTTGTCATTTTCCCTTTCCAG 59.416 41.667 0.00 0.00 0.00 3.86
4651 5723 4.584325 CAGTTGTCATTTTCCCTTTCCAGA 59.416 41.667 0.00 0.00 0.00 3.86
4652 5724 5.068987 CAGTTGTCATTTTCCCTTTCCAGAA 59.931 40.000 0.00 0.00 0.00 3.02
4653 5725 5.302823 AGTTGTCATTTTCCCTTTCCAGAAG 59.697 40.000 0.00 0.00 0.00 2.85
4654 5726 4.803452 TGTCATTTTCCCTTTCCAGAAGT 58.197 39.130 0.00 0.00 0.00 3.01
4655 5727 5.208121 TGTCATTTTCCCTTTCCAGAAGTT 58.792 37.500 0.00 0.00 0.00 2.66
4656 5728 5.660864 TGTCATTTTCCCTTTCCAGAAGTTT 59.339 36.000 0.00 0.00 0.00 2.66
4657 5729 6.156083 TGTCATTTTCCCTTTCCAGAAGTTTT 59.844 34.615 0.00 0.00 0.00 2.43
4658 5730 7.047891 GTCATTTTCCCTTTCCAGAAGTTTTT 58.952 34.615 0.00 0.00 0.00 1.94
4681 5753 2.723124 TTCGAGAAAATGCAAAGGGC 57.277 45.000 0.00 0.00 45.13 5.19
4682 5754 1.909700 TCGAGAAAATGCAAAGGGCT 58.090 45.000 0.00 0.00 45.15 5.19
4683 5755 2.238521 TCGAGAAAATGCAAAGGGCTT 58.761 42.857 0.00 0.00 45.15 4.35
4684 5756 2.627699 TCGAGAAAATGCAAAGGGCTTT 59.372 40.909 0.00 0.00 45.15 3.51
4686 5758 3.184986 CGAGAAAATGCAAAGGGCTTTTG 59.815 43.478 16.86 16.86 45.82 2.44
4710 5782 6.255215 GCATTTCATTGCATTGAAAAGATGG 58.745 36.000 29.99 20.48 45.77 3.51
4711 5783 6.092944 GCATTTCATTGCATTGAAAAGATGGA 59.907 34.615 29.99 13.87 45.77 3.41
4712 5784 7.676338 GCATTTCATTGCATTGAAAAGATGGAG 60.676 37.037 29.99 18.30 45.77 3.86
4713 5785 5.988310 TCATTGCATTGAAAAGATGGAGT 57.012 34.783 8.80 0.00 0.00 3.85
4714 5786 6.349243 TCATTGCATTGAAAAGATGGAGTT 57.651 33.333 8.80 0.00 0.00 3.01
4715 5787 6.761312 TCATTGCATTGAAAAGATGGAGTTT 58.239 32.000 8.80 0.00 0.00 2.66
4716 5788 7.218614 TCATTGCATTGAAAAGATGGAGTTTT 58.781 30.769 8.80 0.00 0.00 2.43
4717 5789 6.847956 TTGCATTGAAAAGATGGAGTTTTG 57.152 33.333 0.00 0.00 0.00 2.44
4718 5790 6.159299 TGCATTGAAAAGATGGAGTTTTGA 57.841 33.333 0.00 0.00 0.00 2.69
4719 5791 5.984926 TGCATTGAAAAGATGGAGTTTTGAC 59.015 36.000 0.00 0.00 0.00 3.18
4720 5792 5.984926 GCATTGAAAAGATGGAGTTTTGACA 59.015 36.000 0.00 0.00 0.00 3.58
4721 5793 6.074142 GCATTGAAAAGATGGAGTTTTGACAC 60.074 38.462 0.00 0.00 0.00 3.67
4722 5794 6.522625 TTGAAAAGATGGAGTTTTGACACA 57.477 33.333 0.00 0.00 0.00 3.72
4723 5795 6.522625 TGAAAAGATGGAGTTTTGACACAA 57.477 33.333 0.00 0.00 0.00 3.33
4724 5796 7.111247 TGAAAAGATGGAGTTTTGACACAAT 57.889 32.000 0.00 0.00 0.00 2.71
4725 5797 7.202526 TGAAAAGATGGAGTTTTGACACAATC 58.797 34.615 0.00 0.00 0.00 2.67
4726 5798 5.712152 AAGATGGAGTTTTGACACAATCC 57.288 39.130 0.00 0.00 0.00 3.01
4727 5799 4.990526 AGATGGAGTTTTGACACAATCCT 58.009 39.130 0.00 0.00 0.00 3.24
4728 5800 5.006386 AGATGGAGTTTTGACACAATCCTC 58.994 41.667 0.00 0.00 0.00 3.71
4729 5801 3.486383 TGGAGTTTTGACACAATCCTCC 58.514 45.455 16.16 16.16 37.97 4.30
4730 5802 3.138283 TGGAGTTTTGACACAATCCTCCT 59.862 43.478 20.12 0.00 38.24 3.69
4731 5803 4.349636 TGGAGTTTTGACACAATCCTCCTA 59.650 41.667 20.12 11.02 38.24 2.94
4732 5804 4.938226 GGAGTTTTGACACAATCCTCCTAG 59.062 45.833 15.93 0.00 35.29 3.02
4733 5805 4.911390 AGTTTTGACACAATCCTCCTAGG 58.089 43.478 0.82 0.82 36.46 3.02
4751 5823 8.398878 CTCCTAGGAGGTTAGATACAAGTTAG 57.601 42.308 28.68 0.00 38.51 2.34
4752 5824 7.880623 TCCTAGGAGGTTAGATACAAGTTAGT 58.119 38.462 7.62 0.00 36.53 2.24
4753 5825 7.778853 TCCTAGGAGGTTAGATACAAGTTAGTG 59.221 40.741 7.62 0.00 36.53 2.74
4754 5826 6.223351 AGGAGGTTAGATACAAGTTAGTGC 57.777 41.667 0.00 0.00 0.00 4.40
4755 5827 5.720041 AGGAGGTTAGATACAAGTTAGTGCA 59.280 40.000 0.00 0.00 0.00 4.57
4756 5828 5.811100 GGAGGTTAGATACAAGTTAGTGCAC 59.189 44.000 9.40 9.40 0.00 4.57
4757 5829 5.408356 AGGTTAGATACAAGTTAGTGCACG 58.592 41.667 12.01 0.00 0.00 5.34
4758 5830 5.047519 AGGTTAGATACAAGTTAGTGCACGT 60.048 40.000 12.01 4.55 0.00 4.49
4759 5831 5.287992 GGTTAGATACAAGTTAGTGCACGTC 59.712 44.000 12.01 6.04 0.00 4.34
4760 5832 3.846360 AGATACAAGTTAGTGCACGTCC 58.154 45.455 12.01 2.76 0.00 4.79
4761 5833 2.443887 TACAAGTTAGTGCACGTCCC 57.556 50.000 12.01 0.82 0.00 4.46
4762 5834 0.466543 ACAAGTTAGTGCACGTCCCA 59.533 50.000 12.01 0.00 0.00 4.37
4763 5835 1.148310 CAAGTTAGTGCACGTCCCAG 58.852 55.000 12.01 0.00 0.00 4.45
4764 5836 0.034896 AAGTTAGTGCACGTCCCAGG 59.965 55.000 12.01 0.00 0.00 4.45
4765 5837 1.119574 AGTTAGTGCACGTCCCAGGT 61.120 55.000 12.01 0.00 0.00 4.00
4766 5838 0.949105 GTTAGTGCACGTCCCAGGTG 60.949 60.000 12.01 0.00 37.08 4.00
4767 5839 2.107041 TTAGTGCACGTCCCAGGTGG 62.107 60.000 12.01 0.00 34.79 4.61
4777 5849 4.431131 CCAGGTGGGCGGCAGAAT 62.431 66.667 12.47 0.00 0.00 2.40
4778 5850 3.136123 CAGGTGGGCGGCAGAATG 61.136 66.667 12.47 0.00 40.87 2.67
4779 5851 3.329889 AGGTGGGCGGCAGAATGA 61.330 61.111 12.47 0.00 39.69 2.57
4780 5852 3.134127 GGTGGGCGGCAGAATGAC 61.134 66.667 12.47 0.00 44.64 3.06
4787 5859 3.706140 GGCAGAATGACGCGTAGG 58.294 61.111 13.97 0.00 39.69 3.18
4788 5860 2.526120 GGCAGAATGACGCGTAGGC 61.526 63.158 13.97 9.72 39.69 3.93
4789 5861 2.526120 GCAGAATGACGCGTAGGCC 61.526 63.158 13.97 0.00 39.69 5.19
4790 5862 1.883084 CAGAATGACGCGTAGGCCC 60.883 63.158 13.97 0.00 39.69 5.80
4791 5863 2.058595 AGAATGACGCGTAGGCCCT 61.059 57.895 13.97 2.99 35.02 5.19
4792 5864 1.153429 GAATGACGCGTAGGCCCTT 60.153 57.895 13.97 0.00 35.02 3.95
4793 5865 0.743345 GAATGACGCGTAGGCCCTTT 60.743 55.000 13.97 3.46 35.02 3.11
4794 5866 0.743345 AATGACGCGTAGGCCCTTTC 60.743 55.000 13.97 0.00 35.02 2.62
4795 5867 2.510918 GACGCGTAGGCCCTTTCC 60.511 66.667 13.97 0.00 35.02 3.13
4796 5868 3.305177 GACGCGTAGGCCCTTTCCA 62.305 63.158 13.97 0.00 35.02 3.53
4797 5869 2.511600 CGCGTAGGCCCTTTCCAG 60.512 66.667 0.00 0.00 35.02 3.86
4798 5870 2.987125 GCGTAGGCCCTTTCCAGA 59.013 61.111 0.00 0.00 0.00 3.86
4799 5871 1.298667 GCGTAGGCCCTTTCCAGAA 59.701 57.895 0.00 0.00 0.00 3.02
4800 5872 0.744771 GCGTAGGCCCTTTCCAGAAG 60.745 60.000 0.00 0.00 0.00 2.85
4801 5873 0.613777 CGTAGGCCCTTTCCAGAAGT 59.386 55.000 0.00 0.00 0.00 3.01
4802 5874 1.676014 CGTAGGCCCTTTCCAGAAGTG 60.676 57.143 0.00 0.00 0.00 3.16
4803 5875 1.628846 GTAGGCCCTTTCCAGAAGTGA 59.371 52.381 0.00 0.00 0.00 3.41
4804 5876 1.376649 AGGCCCTTTCCAGAAGTGAT 58.623 50.000 0.00 0.00 0.00 3.06
4805 5877 1.283321 AGGCCCTTTCCAGAAGTGATC 59.717 52.381 0.00 0.00 0.00 2.92
4806 5878 1.004745 GGCCCTTTCCAGAAGTGATCA 59.995 52.381 0.00 0.00 0.00 2.92
4807 5879 2.357569 GGCCCTTTCCAGAAGTGATCAT 60.358 50.000 0.00 0.00 0.00 2.45
4808 5880 2.948315 GCCCTTTCCAGAAGTGATCATC 59.052 50.000 0.00 0.00 0.00 2.92
4809 5881 3.549794 CCCTTTCCAGAAGTGATCATCC 58.450 50.000 0.00 0.00 0.00 3.51
4810 5882 3.201290 CCTTTCCAGAAGTGATCATCCG 58.799 50.000 0.00 0.00 0.00 4.18
4811 5883 3.118629 CCTTTCCAGAAGTGATCATCCGA 60.119 47.826 0.00 0.00 0.00 4.55
4812 5884 4.507710 CTTTCCAGAAGTGATCATCCGAA 58.492 43.478 0.00 0.00 0.00 4.30
4813 5885 3.526931 TCCAGAAGTGATCATCCGAAC 57.473 47.619 0.00 0.00 0.00 3.95
4814 5886 2.168521 TCCAGAAGTGATCATCCGAACC 59.831 50.000 0.00 0.00 0.00 3.62
4815 5887 2.169352 CCAGAAGTGATCATCCGAACCT 59.831 50.000 0.00 0.00 0.00 3.50
4816 5888 3.452474 CAGAAGTGATCATCCGAACCTC 58.548 50.000 0.00 0.00 0.00 3.85
4817 5889 3.099905 AGAAGTGATCATCCGAACCTCA 58.900 45.455 0.00 0.00 0.00 3.86
4818 5890 3.131933 AGAAGTGATCATCCGAACCTCAG 59.868 47.826 0.00 0.00 0.00 3.35
4819 5891 2.739943 AGTGATCATCCGAACCTCAGA 58.260 47.619 0.00 0.00 0.00 3.27
4820 5892 2.692557 AGTGATCATCCGAACCTCAGAG 59.307 50.000 0.00 0.00 0.00 3.35
4821 5893 1.410517 TGATCATCCGAACCTCAGAGC 59.589 52.381 0.00 0.00 0.00 4.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.320374 TTCCTATTCCGCGCATAGGG 59.680 55.000 28.77 16.89 42.63 3.53
1 2 1.000955 ACTTCCTATTCCGCGCATAGG 59.999 52.381 25.91 25.91 43.44 2.57
6 7 0.599466 GGGTACTTCCTATTCCGCGC 60.599 60.000 0.00 0.00 36.25 6.86
22 23 2.364448 GCCGAGGAAGGAGAGGGT 60.364 66.667 0.00 0.00 0.00 4.34
40 41 2.438951 TAGGTTTGCGGGGTGACGAC 62.439 60.000 0.00 0.00 35.47 4.34
159 160 1.527034 GTTGCCTGATTGCTGAGTGA 58.473 50.000 0.00 0.00 0.00 3.41
181 182 0.829333 ATGAGATGAGCTGCGGACTT 59.171 50.000 0.00 0.00 0.00 3.01
194 195 3.371380 GGAGTTGAGGCCAAGAATGAGAT 60.371 47.826 5.01 0.00 32.06 2.75
201 202 1.140312 ACAAGGAGTTGAGGCCAAGA 58.860 50.000 5.01 0.00 37.10 3.02
204 205 0.843309 TGAACAAGGAGTTGAGGCCA 59.157 50.000 5.01 0.00 41.51 5.36
205 206 1.528129 CTGAACAAGGAGTTGAGGCC 58.472 55.000 0.00 0.00 41.51 5.19
206 207 0.877743 GCTGAACAAGGAGTTGAGGC 59.122 55.000 0.00 0.00 41.16 4.70
213 214 0.689623 AGGGACAGCTGAACAAGGAG 59.310 55.000 23.35 0.00 0.00 3.69
228 229 3.252585 TAGTGCAGGGAGCCAGGGA 62.253 63.158 0.00 0.00 44.83 4.20
229 230 2.688666 TAGTGCAGGGAGCCAGGG 60.689 66.667 0.00 0.00 44.83 4.45
230 231 1.557269 AACTAGTGCAGGGAGCCAGG 61.557 60.000 0.00 0.00 44.83 4.45
231 232 0.107945 GAACTAGTGCAGGGAGCCAG 60.108 60.000 0.00 0.00 44.83 4.85
232 233 0.545309 AGAACTAGTGCAGGGAGCCA 60.545 55.000 3.00 0.00 44.83 4.75
233 234 0.107945 CAGAACTAGTGCAGGGAGCC 60.108 60.000 3.00 0.00 44.83 4.70
234 235 0.610687 ACAGAACTAGTGCAGGGAGC 59.389 55.000 3.00 0.00 45.96 4.70
235 236 3.449018 ACATACAGAACTAGTGCAGGGAG 59.551 47.826 3.00 0.00 0.00 4.30
236 237 3.441101 ACATACAGAACTAGTGCAGGGA 58.559 45.455 3.00 0.00 0.00 4.20
237 238 3.895232 ACATACAGAACTAGTGCAGGG 57.105 47.619 3.00 0.00 0.00 4.45
311 312 2.404083 CACGGAACCAGTGCAAGTT 58.596 52.632 0.00 0.00 32.52 2.66
397 408 0.539051 CCTTCTCATTCCCTCTGCGT 59.461 55.000 0.00 0.00 0.00 5.24
399 410 2.503356 TCTTCCTTCTCATTCCCTCTGC 59.497 50.000 0.00 0.00 0.00 4.26
405 416 6.648192 TCATCTTCTTCTTCCTTCTCATTCC 58.352 40.000 0.00 0.00 0.00 3.01
460 486 2.902846 CAAACCGGCCACGTGGAA 60.903 61.111 38.30 0.00 38.78 3.53
462 488 3.656045 GACAAACCGGCCACGTGG 61.656 66.667 30.66 30.66 38.78 4.94
477 503 4.616373 CGTCCAAAACCAGAGTAGAGAGAC 60.616 50.000 0.00 0.00 0.00 3.36
478 504 3.506455 CGTCCAAAACCAGAGTAGAGAGA 59.494 47.826 0.00 0.00 0.00 3.10
480 506 3.493334 TCGTCCAAAACCAGAGTAGAGA 58.507 45.455 0.00 0.00 0.00 3.10
575 603 4.624015 CAAACAGTACGTCCCTCAAGTAA 58.376 43.478 0.00 0.00 0.00 2.24
576 604 3.553508 GCAAACAGTACGTCCCTCAAGTA 60.554 47.826 0.00 0.00 0.00 2.24
599 627 1.275291 CCAACCATCGTACTCACTGGT 59.725 52.381 0.00 0.00 43.74 4.00
603 631 1.803334 TTGCCAACCATCGTACTCAC 58.197 50.000 0.00 0.00 0.00 3.51
615 643 6.423604 ACTTAATGCTATTGTGTTTTGCCAAC 59.576 34.615 0.00 0.00 0.00 3.77
666 694 9.185192 GAGTATATTTGCAACATAATTTCAGGC 57.815 33.333 0.00 0.00 0.00 4.85
775 804 1.699634 AGGTTCAGCACACCAGTACAT 59.300 47.619 0.00 0.00 36.67 2.29
786 815 3.507162 TCCAGAAATTCAGGTTCAGCA 57.493 42.857 4.33 0.00 0.00 4.41
831 861 3.596214 TCTAGAAAATCGGTTCAGTGGC 58.404 45.455 0.00 0.00 0.00 5.01
1011 1041 2.589159 TTGCGGTGCTTACGTGCA 60.589 55.556 0.00 0.00 41.05 4.57
1041 1071 4.798682 GCCTCCGAGGGGGAAGGA 62.799 72.222 13.25 0.00 46.61 3.36
1082 1112 2.224523 TGGTCATCAAGGTGGAGTTCAC 60.225 50.000 0.00 0.00 45.34 3.18
1147 1177 1.134788 GGAATCCTGGACGTCGTCATT 60.135 52.381 25.64 16.35 33.68 2.57
1254 1292 4.004314 CTCCTCGTCACTCTAACAAGAGA 58.996 47.826 9.31 0.00 39.14 3.10
1255 1293 3.127895 CCTCCTCGTCACTCTAACAAGAG 59.872 52.174 0.89 0.89 41.45 2.85
1256 1294 3.082548 CCTCCTCGTCACTCTAACAAGA 58.917 50.000 0.00 0.00 0.00 3.02
1257 1295 3.082548 TCCTCCTCGTCACTCTAACAAG 58.917 50.000 0.00 0.00 0.00 3.16
1258 1296 3.082548 CTCCTCCTCGTCACTCTAACAA 58.917 50.000 0.00 0.00 0.00 2.83
1307 1345 1.269448 GCTCTCCTCATCGTCATCCTC 59.731 57.143 0.00 0.00 0.00 3.71
1308 1346 1.327303 GCTCTCCTCATCGTCATCCT 58.673 55.000 0.00 0.00 0.00 3.24
1309 1347 0.316841 GGCTCTCCTCATCGTCATCC 59.683 60.000 0.00 0.00 0.00 3.51
1310 1348 1.327303 AGGCTCTCCTCATCGTCATC 58.673 55.000 0.00 0.00 38.72 2.92
1311 1349 3.529948 AGGCTCTCCTCATCGTCAT 57.470 52.632 0.00 0.00 38.72 3.06
1329 1367 1.966354 CATCGTCATCCTCCTCATGGA 59.034 52.381 0.00 0.00 40.69 3.41
1330 1368 1.966354 TCATCGTCATCCTCCTCATGG 59.034 52.381 0.00 0.00 0.00 3.66
1331 1369 2.029200 CCTCATCGTCATCCTCCTCATG 60.029 54.545 0.00 0.00 0.00 3.07
1332 1370 2.158400 TCCTCATCGTCATCCTCCTCAT 60.158 50.000 0.00 0.00 0.00 2.90
1333 1371 1.215423 TCCTCATCGTCATCCTCCTCA 59.785 52.381 0.00 0.00 0.00 3.86
1726 1800 9.162764 GATGTAGAGGTTAATAGTTTGAAAGCA 57.837 33.333 0.00 0.00 0.00 3.91
2012 2110 4.221703 AGAGTCTGTTTCGATGAGTCCAAT 59.778 41.667 0.00 0.00 32.31 3.16
2212 2437 5.078411 TGAGAAAGACTGGATAGCAGTTC 57.922 43.478 0.00 0.00 32.33 3.01
2303 2528 0.875728 CGACCACTCGTCACTCTCTT 59.124 55.000 0.00 0.00 42.07 2.85
2321 2546 4.968626 TGTATGCAATTTCTGTACTTGCG 58.031 39.130 10.94 0.00 46.35 4.85
2492 2718 7.148373 GGTCCGTATTAAAGCACAAAAGACATA 60.148 37.037 0.00 0.00 0.00 2.29
2497 2723 5.365403 TGGTCCGTATTAAAGCACAAAAG 57.635 39.130 0.00 0.00 0.00 2.27
2568 2823 8.961092 CAAACAATTCACTAACTCAAAGACATG 58.039 33.333 0.00 0.00 0.00 3.21
2784 3434 6.165577 GCATTCAACCAACCTGATTAAATGT 58.834 36.000 0.00 0.00 0.00 2.71
2831 3481 1.693606 CAGGCCTGTCCCACAATTTTT 59.306 47.619 25.53 0.00 34.51 1.94
2832 3482 1.341080 CAGGCCTGTCCCACAATTTT 58.659 50.000 25.53 0.00 34.51 1.82
2833 3483 0.542702 CCAGGCCTGTCCCACAATTT 60.543 55.000 30.63 0.00 34.51 1.82
2834 3484 1.077265 CCAGGCCTGTCCCACAATT 59.923 57.895 30.63 0.00 34.51 2.32
2842 3493 4.464947 AGCTTTATAAATCCAGGCCTGTC 58.535 43.478 30.63 0.00 0.00 3.51
3149 3812 3.286915 GAAAGGCCGGCAAGCTTGG 62.287 63.158 30.85 12.59 0.00 3.61
3160 3823 6.765915 ATAGAACAAAATGAGAGAAAGGCC 57.234 37.500 0.00 0.00 0.00 5.19
3240 3938 4.467198 TCCCCGAAATCAGTCTAACTTC 57.533 45.455 0.00 0.00 0.00 3.01
3294 3992 1.927174 GGCAAGTGCACTAGACATACG 59.073 52.381 22.01 2.70 44.36 3.06
3301 3999 0.737715 GAGACCGGCAAGTGCACTAG 60.738 60.000 22.01 11.80 44.36 2.57
3314 4012 0.034059 GGGGTGAGCATATGAGACCG 59.966 60.000 6.97 0.00 0.00 4.79
3383 4081 8.454106 AGAAGTTGATGGTAAAATTCAGAATCG 58.546 33.333 0.00 0.00 34.83 3.34
3436 4134 3.334583 TGAACTAACCAGATGCTCCAC 57.665 47.619 0.00 0.00 0.00 4.02
3507 4209 1.653115 GCAGCAGCATGGCTCATAC 59.347 57.895 0.00 0.00 43.68 2.39
3629 4331 2.959507 AAACAACTGCACCCAAAGTC 57.040 45.000 0.00 0.00 0.00 3.01
3790 4495 2.281761 ACTTCTGCAGGTTGCCCG 60.282 61.111 15.13 0.00 44.23 6.13
3876 4581 8.542497 TGTGGTATTACTTCAGTTTCACATAC 57.458 34.615 0.00 0.00 0.00 2.39
3922 4627 3.834813 ACTCATCGTCATACATAGGCCAT 59.165 43.478 5.01 0.00 0.00 4.40
3937 4642 8.982685 AGCAACTAATATTCATTACACTCATCG 58.017 33.333 0.00 0.00 0.00 3.84
4011 4799 3.795688 TCTTGAGCTCCCTGTTTGAAT 57.204 42.857 12.15 0.00 0.00 2.57
4012 4800 3.576078 TTCTTGAGCTCCCTGTTTGAA 57.424 42.857 12.15 2.58 0.00 2.69
4013 4801 3.576078 TTTCTTGAGCTCCCTGTTTGA 57.424 42.857 12.15 0.00 0.00 2.69
4014 4802 4.038402 ACAATTTCTTGAGCTCCCTGTTTG 59.962 41.667 12.15 10.46 36.20 2.93
4015 4803 4.218312 ACAATTTCTTGAGCTCCCTGTTT 58.782 39.130 12.15 0.00 36.20 2.83
4018 4806 4.583871 ACTACAATTTCTTGAGCTCCCTG 58.416 43.478 12.15 1.12 36.20 4.45
4019 4807 4.534103 AGACTACAATTTCTTGAGCTCCCT 59.466 41.667 12.15 0.00 36.20 4.20
4020 4808 4.633565 CAGACTACAATTTCTTGAGCTCCC 59.366 45.833 12.15 0.00 36.20 4.30
4022 4810 4.692625 TGCAGACTACAATTTCTTGAGCTC 59.307 41.667 6.82 6.82 36.20 4.09
4024 4812 5.362556 TTGCAGACTACAATTTCTTGAGC 57.637 39.130 0.00 0.00 36.20 4.26
4025 4813 5.855395 GCTTTGCAGACTACAATTTCTTGAG 59.145 40.000 0.00 0.00 36.20 3.02
4026 4814 5.299028 TGCTTTGCAGACTACAATTTCTTGA 59.701 36.000 0.00 0.00 33.61 3.02
4027 4815 5.522456 TGCTTTGCAGACTACAATTTCTTG 58.478 37.500 0.00 0.00 34.70 3.02
4030 4818 8.427774 GTTTATTGCTTTGCAGACTACAATTTC 58.572 33.333 7.50 0.00 40.61 2.17
4031 4819 7.925483 TGTTTATTGCTTTGCAGACTACAATTT 59.075 29.630 7.50 0.00 40.61 1.82
4032 4820 7.432869 TGTTTATTGCTTTGCAGACTACAATT 58.567 30.769 7.50 0.00 40.61 2.32
4039 4922 6.667386 GCGTTTATGTTTATTGCTTTGCAGAC 60.667 38.462 0.00 0.00 40.61 3.51
4059 4942 3.008049 ACAACTCAGATAAGAGGGCGTTT 59.992 43.478 0.00 0.00 39.97 3.60
4124 5009 7.436933 TGCTTAGATAAGAGACATACACCATG 58.563 38.462 3.77 0.00 36.75 3.66
4131 5016 9.330063 CAATTGGTTGCTTAGATAAGAGACATA 57.670 33.333 3.77 0.00 35.33 2.29
4152 5037 6.044046 CCCCATGATGTTGTTATGTCAATTG 58.956 40.000 0.00 0.00 0.00 2.32
4352 5240 7.072177 TGTTGTTGTAAGTCAAACTTCAGAG 57.928 36.000 0.00 0.00 39.51 3.35
4353 5241 7.041030 TGTTGTTGTTGTAAGTCAAACTTCAGA 60.041 33.333 0.00 0.00 39.51 3.27
4354 5242 7.081349 TGTTGTTGTTGTAAGTCAAACTTCAG 58.919 34.615 0.00 0.00 39.51 3.02
4355 5243 6.971602 TGTTGTTGTTGTAAGTCAAACTTCA 58.028 32.000 0.00 0.00 39.51 3.02
4357 5245 8.649973 TTTTGTTGTTGTTGTAAGTCAAACTT 57.350 26.923 0.00 0.00 41.97 2.66
4358 5246 8.649973 TTTTTGTTGTTGTTGTAAGTCAAACT 57.350 26.923 0.00 0.00 37.81 2.66
4396 5284 9.528489 ACTCCCTTTATTTTTATTTACTCTGCA 57.472 29.630 0.00 0.00 0.00 4.41
4413 5485 6.239887 GCCCATGACAGAATATACTCCCTTTA 60.240 42.308 0.00 0.00 0.00 1.85
4419 5491 3.006967 ACCGCCCATGACAGAATATACTC 59.993 47.826 0.00 0.00 0.00 2.59
4431 5503 2.230266 GCTTTCTTTTTACCGCCCATGA 59.770 45.455 0.00 0.00 0.00 3.07
4433 5505 2.243810 TGCTTTCTTTTTACCGCCCAT 58.756 42.857 0.00 0.00 0.00 4.00
4440 5512 5.778862 TGGCCTACAATGCTTTCTTTTTAC 58.221 37.500 3.32 0.00 0.00 2.01
4442 5514 4.953940 TGGCCTACAATGCTTTCTTTTT 57.046 36.364 3.32 0.00 0.00 1.94
4478 5550 1.540267 GCGGCCGATAAGACTATCTCA 59.460 52.381 33.48 0.00 33.03 3.27
4498 5570 3.053896 GTTTCTTCCCACCGCCGG 61.054 66.667 0.00 0.00 0.00 6.13
4499 5571 3.053896 GGTTTCTTCCCACCGCCG 61.054 66.667 0.00 0.00 0.00 6.46
4504 5576 2.148768 CCTACAACGGTTTCTTCCCAC 58.851 52.381 0.00 0.00 0.00 4.61
4515 5587 2.228103 GGAAAAGGAAAGCCTACAACGG 59.772 50.000 0.00 0.00 46.28 4.44
4520 5592 3.368427 GCATTGGGAAAAGGAAAGCCTAC 60.368 47.826 0.00 0.00 46.28 3.18
4544 5616 0.392706 TGAGGACGACACTGCACATT 59.607 50.000 0.00 0.00 0.00 2.71
4545 5617 0.319900 GTGAGGACGACACTGCACAT 60.320 55.000 0.00 0.00 35.66 3.21
4546 5618 1.067416 GTGAGGACGACACTGCACA 59.933 57.895 0.00 0.00 35.66 4.57
4547 5619 1.664965 GGTGAGGACGACACTGCAC 60.665 63.158 0.00 0.00 38.20 4.57
4548 5620 1.681486 TTGGTGAGGACGACACTGCA 61.681 55.000 0.00 0.00 38.20 4.41
4549 5621 0.531974 TTTGGTGAGGACGACACTGC 60.532 55.000 0.00 0.00 38.20 4.40
4550 5622 2.069273 GATTTGGTGAGGACGACACTG 58.931 52.381 0.00 0.00 38.20 3.66
4551 5623 1.002087 GGATTTGGTGAGGACGACACT 59.998 52.381 0.00 0.00 38.20 3.55
4552 5624 1.270625 TGGATTTGGTGAGGACGACAC 60.271 52.381 0.00 0.00 37.51 3.67
4553 5625 1.052617 TGGATTTGGTGAGGACGACA 58.947 50.000 0.00 0.00 0.00 4.35
4554 5626 2.178912 TTGGATTTGGTGAGGACGAC 57.821 50.000 0.00 0.00 0.00 4.34
4555 5627 2.158740 TGTTTGGATTTGGTGAGGACGA 60.159 45.455 0.00 0.00 0.00 4.20
4556 5628 2.226330 TGTTTGGATTTGGTGAGGACG 58.774 47.619 0.00 0.00 0.00 4.79
4557 5629 2.558359 CCTGTTTGGATTTGGTGAGGAC 59.442 50.000 0.00 0.00 38.35 3.85
4564 5636 1.821136 GAGCTCCCTGTTTGGATTTGG 59.179 52.381 0.87 0.00 38.35 3.28
4576 5648 2.592102 TTGCATTTCTTGAGCTCCCT 57.408 45.000 12.15 0.00 0.00 4.20
4582 5654 6.565247 GCTGTGGAAAATTTGCATTTCTTGAG 60.565 38.462 2.74 5.78 37.06 3.02
4584 5656 5.007823 TGCTGTGGAAAATTTGCATTTCTTG 59.992 36.000 2.74 2.05 37.06 3.02
4585 5657 5.124645 TGCTGTGGAAAATTTGCATTTCTT 58.875 33.333 2.74 0.00 37.06 2.52
4602 5674 0.239082 TCATGCGCTCTTTTGCTGTG 59.761 50.000 9.73 0.00 0.00 3.66
4603 5675 0.239347 GTCATGCGCTCTTTTGCTGT 59.761 50.000 9.73 0.00 0.00 4.40
4604 5676 0.239082 TGTCATGCGCTCTTTTGCTG 59.761 50.000 9.73 0.00 0.00 4.41
4605 5677 0.239347 GTGTCATGCGCTCTTTTGCT 59.761 50.000 9.73 0.00 0.00 3.91
4606 5678 1.061799 CGTGTCATGCGCTCTTTTGC 61.062 55.000 9.73 0.00 0.00 3.68
4607 5679 0.453282 CCGTGTCATGCGCTCTTTTG 60.453 55.000 9.73 0.00 0.00 2.44
4611 5683 2.125912 GACCGTGTCATGCGCTCT 60.126 61.111 9.73 0.00 32.09 4.09
4621 5693 2.616842 GGAAAATGACAACTGACCGTGT 59.383 45.455 0.00 0.00 0.00 4.49
4659 5731 3.807071 GCCCTTTGCATTTTCTCGAAAAA 59.193 39.130 8.69 7.59 42.71 1.94
4660 5732 3.069443 AGCCCTTTGCATTTTCTCGAAAA 59.931 39.130 7.22 7.22 44.83 2.29
4661 5733 2.627699 AGCCCTTTGCATTTTCTCGAAA 59.372 40.909 0.00 0.00 44.83 3.46
4662 5734 2.238521 AGCCCTTTGCATTTTCTCGAA 58.761 42.857 0.00 0.00 44.83 3.71
4663 5735 1.909700 AGCCCTTTGCATTTTCTCGA 58.090 45.000 0.00 0.00 44.83 4.04
4664 5736 2.730550 AAGCCCTTTGCATTTTCTCG 57.269 45.000 0.00 0.00 44.83 4.04
4665 5737 4.737353 CAAAAGCCCTTTGCATTTTCTC 57.263 40.909 0.00 0.00 38.73 2.87
4674 5746 4.789784 CAATGAAATGCAAAAGCCCTTTG 58.210 39.130 0.00 4.82 46.20 2.77
4675 5747 3.253921 GCAATGAAATGCAAAAGCCCTTT 59.746 39.130 0.00 0.00 45.70 3.11
4676 5748 2.815503 GCAATGAAATGCAAAAGCCCTT 59.184 40.909 0.00 0.00 45.70 3.95
4677 5749 2.429478 GCAATGAAATGCAAAAGCCCT 58.571 42.857 0.00 0.00 45.70 5.19
4678 5750 2.905959 GCAATGAAATGCAAAAGCCC 57.094 45.000 0.00 0.00 45.70 5.19
4686 5758 6.092944 TCCATCTTTTCAATGCAATGAAATGC 59.907 34.615 26.18 0.00 45.77 3.56
4687 5759 7.333423 ACTCCATCTTTTCAATGCAATGAAATG 59.667 33.333 26.18 26.05 45.77 2.32
4688 5760 7.391620 ACTCCATCTTTTCAATGCAATGAAAT 58.608 30.769 26.18 12.29 45.77 2.17
4689 5761 6.761312 ACTCCATCTTTTCAATGCAATGAAA 58.239 32.000 22.92 22.92 45.07 2.69
4690 5762 6.349243 ACTCCATCTTTTCAATGCAATGAA 57.651 33.333 13.20 13.20 37.53 2.57
4691 5763 5.988310 ACTCCATCTTTTCAATGCAATGA 57.012 34.783 0.00 0.00 0.00 2.57
4692 5764 7.171848 TCAAAACTCCATCTTTTCAATGCAATG 59.828 33.333 0.00 0.00 0.00 2.82
4693 5765 7.172019 GTCAAAACTCCATCTTTTCAATGCAAT 59.828 33.333 0.00 0.00 0.00 3.56
4694 5766 6.479660 GTCAAAACTCCATCTTTTCAATGCAA 59.520 34.615 0.00 0.00 0.00 4.08
4695 5767 5.984926 GTCAAAACTCCATCTTTTCAATGCA 59.015 36.000 0.00 0.00 0.00 3.96
4696 5768 5.984926 TGTCAAAACTCCATCTTTTCAATGC 59.015 36.000 0.00 0.00 0.00 3.56
4697 5769 6.979817 TGTGTCAAAACTCCATCTTTTCAATG 59.020 34.615 0.00 0.00 0.00 2.82
4698 5770 7.111247 TGTGTCAAAACTCCATCTTTTCAAT 57.889 32.000 0.00 0.00 0.00 2.57
4699 5771 6.522625 TGTGTCAAAACTCCATCTTTTCAA 57.477 33.333 0.00 0.00 0.00 2.69
4700 5772 6.522625 TTGTGTCAAAACTCCATCTTTTCA 57.477 33.333 0.00 0.00 0.00 2.69
4701 5773 6.642540 GGATTGTGTCAAAACTCCATCTTTTC 59.357 38.462 0.00 0.00 0.00 2.29
4702 5774 6.324770 AGGATTGTGTCAAAACTCCATCTTTT 59.675 34.615 6.86 0.00 0.00 2.27
4703 5775 5.835280 AGGATTGTGTCAAAACTCCATCTTT 59.165 36.000 6.86 0.00 0.00 2.52
4704 5776 5.388654 AGGATTGTGTCAAAACTCCATCTT 58.611 37.500 6.86 0.00 0.00 2.40
4705 5777 4.990526 AGGATTGTGTCAAAACTCCATCT 58.009 39.130 6.86 0.00 0.00 2.90
4706 5778 4.156739 GGAGGATTGTGTCAAAACTCCATC 59.843 45.833 20.37 9.25 41.93 3.51
4707 5779 4.082125 GGAGGATTGTGTCAAAACTCCAT 58.918 43.478 20.37 3.46 41.93 3.41
4708 5780 3.138283 AGGAGGATTGTGTCAAAACTCCA 59.862 43.478 23.86 0.00 44.12 3.86
4709 5781 3.756117 AGGAGGATTGTGTCAAAACTCC 58.244 45.455 18.92 18.92 42.49 3.85
4710 5782 4.938226 CCTAGGAGGATTGTGTCAAAACTC 59.062 45.833 1.05 7.67 37.67 3.01
4711 5783 4.597507 TCCTAGGAGGATTGTGTCAAAACT 59.402 41.667 7.62 0.00 40.06 2.66
4712 5784 4.906618 TCCTAGGAGGATTGTGTCAAAAC 58.093 43.478 7.62 0.00 40.06 2.43
4713 5785 5.165961 CTCCTAGGAGGATTGTGTCAAAA 57.834 43.478 28.68 0.00 44.81 2.44
4714 5786 4.826274 CTCCTAGGAGGATTGTGTCAAA 57.174 45.455 28.68 0.00 44.81 2.69
4726 5798 8.000127 ACTAACTTGTATCTAACCTCCTAGGAG 59.000 40.741 29.27 29.27 37.67 3.69
4727 5799 7.778853 CACTAACTTGTATCTAACCTCCTAGGA 59.221 40.741 11.98 11.98 37.67 2.94
4728 5800 7.470286 GCACTAACTTGTATCTAACCTCCTAGG 60.470 44.444 0.82 0.82 42.49 3.02
4729 5801 7.068348 TGCACTAACTTGTATCTAACCTCCTAG 59.932 40.741 0.00 0.00 0.00 3.02
4730 5802 6.893554 TGCACTAACTTGTATCTAACCTCCTA 59.106 38.462 0.00 0.00 0.00 2.94
4731 5803 5.720041 TGCACTAACTTGTATCTAACCTCCT 59.280 40.000 0.00 0.00 0.00 3.69
4732 5804 5.811100 GTGCACTAACTTGTATCTAACCTCC 59.189 44.000 10.32 0.00 0.00 4.30
4733 5805 5.515626 CGTGCACTAACTTGTATCTAACCTC 59.484 44.000 16.19 0.00 0.00 3.85
4734 5806 5.047519 ACGTGCACTAACTTGTATCTAACCT 60.048 40.000 16.19 0.00 0.00 3.50
4735 5807 5.166398 ACGTGCACTAACTTGTATCTAACC 58.834 41.667 16.19 0.00 0.00 2.85
4736 5808 5.287992 GGACGTGCACTAACTTGTATCTAAC 59.712 44.000 16.19 0.00 0.00 2.34
4737 5809 5.404946 GGACGTGCACTAACTTGTATCTAA 58.595 41.667 16.19 0.00 0.00 2.10
4738 5810 4.142315 GGGACGTGCACTAACTTGTATCTA 60.142 45.833 16.19 0.00 0.00 1.98
4739 5811 3.368116 GGGACGTGCACTAACTTGTATCT 60.368 47.826 16.19 0.00 0.00 1.98
4740 5812 2.928116 GGGACGTGCACTAACTTGTATC 59.072 50.000 16.19 0.66 0.00 2.24
4741 5813 2.300723 TGGGACGTGCACTAACTTGTAT 59.699 45.455 16.19 0.00 0.00 2.29
4742 5814 1.687660 TGGGACGTGCACTAACTTGTA 59.312 47.619 16.19 0.00 0.00 2.41
4743 5815 0.466543 TGGGACGTGCACTAACTTGT 59.533 50.000 16.19 3.65 0.00 3.16
4744 5816 1.148310 CTGGGACGTGCACTAACTTG 58.852 55.000 16.19 0.00 0.00 3.16
4745 5817 0.034896 CCTGGGACGTGCACTAACTT 59.965 55.000 16.19 0.00 0.00 2.66
4746 5818 1.119574 ACCTGGGACGTGCACTAACT 61.120 55.000 16.19 0.00 0.00 2.24
4747 5819 0.949105 CACCTGGGACGTGCACTAAC 60.949 60.000 16.19 5.79 0.00 2.34
4748 5820 1.369692 CACCTGGGACGTGCACTAA 59.630 57.895 16.19 0.00 0.00 2.24
4749 5821 2.579657 CCACCTGGGACGTGCACTA 61.580 63.158 16.19 0.00 40.01 2.74
4750 5822 3.941188 CCACCTGGGACGTGCACT 61.941 66.667 16.19 1.46 40.01 4.40
4760 5832 4.431131 ATTCTGCCGCCCACCTGG 62.431 66.667 0.00 0.00 37.09 4.45
4761 5833 3.136123 CATTCTGCCGCCCACCTG 61.136 66.667 0.00 0.00 0.00 4.00
4762 5834 3.329889 TCATTCTGCCGCCCACCT 61.330 61.111 0.00 0.00 0.00 4.00
4763 5835 3.134127 GTCATTCTGCCGCCCACC 61.134 66.667 0.00 0.00 0.00 4.61
4764 5836 3.499737 CGTCATTCTGCCGCCCAC 61.500 66.667 0.00 0.00 0.00 4.61
4768 5840 2.860628 CTACGCGTCATTCTGCCGC 61.861 63.158 18.63 0.00 43.74 6.53
4769 5841 2.230940 CCTACGCGTCATTCTGCCG 61.231 63.158 18.63 0.00 0.00 5.69
4770 5842 2.526120 GCCTACGCGTCATTCTGCC 61.526 63.158 18.63 0.00 0.00 4.85
4771 5843 2.526120 GGCCTACGCGTCATTCTGC 61.526 63.158 18.63 10.50 35.02 4.26
4772 5844 1.883084 GGGCCTACGCGTCATTCTG 60.883 63.158 18.63 0.00 35.02 3.02
4773 5845 1.614241 AAGGGCCTACGCGTCATTCT 61.614 55.000 18.63 5.56 35.02 2.40
4774 5846 0.743345 AAAGGGCCTACGCGTCATTC 60.743 55.000 18.63 4.34 35.02 2.67
4775 5847 0.743345 GAAAGGGCCTACGCGTCATT 60.743 55.000 18.63 1.42 35.02 2.57
4776 5848 1.153429 GAAAGGGCCTACGCGTCAT 60.153 57.895 18.63 0.00 35.02 3.06
4777 5849 2.263540 GAAAGGGCCTACGCGTCA 59.736 61.111 18.63 0.96 35.02 4.35
4778 5850 2.510918 GGAAAGGGCCTACGCGTC 60.511 66.667 18.63 0.00 35.02 5.19
4779 5851 3.310860 CTGGAAAGGGCCTACGCGT 62.311 63.158 19.17 19.17 35.02 6.01
4780 5852 2.511600 CTGGAAAGGGCCTACGCG 60.512 66.667 6.41 3.53 35.02 6.01
4781 5853 0.744771 CTTCTGGAAAGGGCCTACGC 60.745 60.000 6.41 0.00 0.00 4.42
4782 5854 0.613777 ACTTCTGGAAAGGGCCTACG 59.386 55.000 6.41 0.00 0.00 3.51
4783 5855 1.628846 TCACTTCTGGAAAGGGCCTAC 59.371 52.381 6.41 4.00 0.00 3.18
4784 5856 2.038863 TCACTTCTGGAAAGGGCCTA 57.961 50.000 6.41 0.00 0.00 3.93
4785 5857 1.283321 GATCACTTCTGGAAAGGGCCT 59.717 52.381 0.00 0.00 0.00 5.19
4786 5858 1.004745 TGATCACTTCTGGAAAGGGCC 59.995 52.381 0.00 0.00 0.00 5.80
4787 5859 2.496899 TGATCACTTCTGGAAAGGGC 57.503 50.000 0.00 0.00 0.00 5.19
4788 5860 3.549794 GGATGATCACTTCTGGAAAGGG 58.450 50.000 0.00 0.00 0.00 3.95
4789 5861 3.118629 TCGGATGATCACTTCTGGAAAGG 60.119 47.826 0.00 0.00 0.00 3.11
4790 5862 4.128925 TCGGATGATCACTTCTGGAAAG 57.871 45.455 0.00 0.00 0.00 2.62
4791 5863 4.253685 GTTCGGATGATCACTTCTGGAAA 58.746 43.478 0.00 0.00 0.00 3.13
4792 5864 3.369471 GGTTCGGATGATCACTTCTGGAA 60.369 47.826 0.00 0.00 0.00 3.53
4793 5865 2.168521 GGTTCGGATGATCACTTCTGGA 59.831 50.000 0.00 0.00 0.00 3.86
4794 5866 2.169352 AGGTTCGGATGATCACTTCTGG 59.831 50.000 0.00 0.00 0.00 3.86
4795 5867 3.118992 TGAGGTTCGGATGATCACTTCTG 60.119 47.826 0.00 0.00 0.00 3.02
4796 5868 3.099905 TGAGGTTCGGATGATCACTTCT 58.900 45.455 0.00 0.00 0.00 2.85
4797 5869 3.131223 TCTGAGGTTCGGATGATCACTTC 59.869 47.826 0.00 0.00 0.00 3.01
4798 5870 3.099905 TCTGAGGTTCGGATGATCACTT 58.900 45.455 0.00 0.00 0.00 3.16
4799 5871 2.692557 CTCTGAGGTTCGGATGATCACT 59.307 50.000 0.00 0.00 30.24 3.41
4800 5872 2.801342 GCTCTGAGGTTCGGATGATCAC 60.801 54.545 6.83 0.00 30.24 3.06
4801 5873 1.410517 GCTCTGAGGTTCGGATGATCA 59.589 52.381 6.83 0.00 30.24 2.92
4802 5874 2.147436 GCTCTGAGGTTCGGATGATC 57.853 55.000 6.83 0.00 30.24 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.