Multiple sequence alignment - TraesCS3A01G086400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G086400 chr3A 100.000 4957 0 0 1 4957 55736613 55741569 0.000000e+00 9154.0
1 TraesCS3A01G086400 chr3A 97.705 305 5 2 1 304 723651641 723651944 1.580000e-144 523.0
2 TraesCS3A01G086400 chr3D 89.718 2947 179 52 893 3793 43804486 43807354 0.000000e+00 3650.0
3 TraesCS3A01G086400 chr3D 94.024 251 10 3 4171 4416 43807984 43808234 4.680000e-100 375.0
4 TraesCS3A01G086400 chr3D 83.239 352 24 14 3828 4156 43807564 43807903 1.750000e-74 291.0
5 TraesCS3A01G086400 chr3B 91.862 2003 124 20 1818 3801 68589297 68591279 0.000000e+00 2760.0
6 TraesCS3A01G086400 chr3B 86.447 1033 73 32 803 1789 68588289 68589300 0.000000e+00 1070.0
7 TraesCS3A01G086400 chr3B 95.046 545 23 2 4417 4957 699683580 699684124 0.000000e+00 854.0
8 TraesCS3A01G086400 chr3B 94.312 545 27 2 4417 4957 777007929 777007385 0.000000e+00 832.0
9 TraesCS3A01G086400 chr3B 93.715 541 26 3 4421 4957 682784890 682785426 0.000000e+00 804.0
10 TraesCS3A01G086400 chr3B 92.124 419 28 3 4544 4957 812314188 812314606 1.990000e-163 586.0
11 TraesCS3A01G086400 chr3B 99.656 291 1 0 1 291 10932418 10932128 2.630000e-147 532.0
12 TraesCS3A01G086400 chr3B 87.912 273 29 4 4417 4688 699684312 699684043 8.010000e-83 318.0
13 TraesCS3A01G086400 chr3B 86.813 273 33 3 4417 4688 682785615 682785345 8.060000e-78 302.0
14 TraesCS3A01G086400 chr3B 87.037 270 32 3 4417 4685 777007196 777007463 8.060000e-78 302.0
15 TraesCS3A01G086400 chr3B 86.131 274 34 4 4417 4688 812314795 812314524 4.850000e-75 292.0
16 TraesCS3A01G086400 chr3B 86.335 161 18 4 4417 4575 250270393 250270551 6.600000e-39 172.0
17 TraesCS3A01G086400 chr7B 91.667 504 21 3 336 818 673680828 673681331 0.000000e+00 678.0
18 TraesCS3A01G086400 chr7B 78.710 155 28 4 375 527 593647660 593647811 1.140000e-16 99.0
19 TraesCS3A01G086400 chr2B 90.192 469 31 1 361 814 25894551 25894083 9.180000e-167 597.0
20 TraesCS3A01G086400 chr5A 88.690 504 36 4 336 818 84132717 84132214 3.300000e-166 595.0
21 TraesCS3A01G086400 chr5A 92.889 225 16 0 594 818 84131574 84131350 1.330000e-85 327.0
22 TraesCS3A01G086400 chr5A 92.444 225 17 0 594 818 84130711 84130487 6.190000e-84 322.0
23 TraesCS3A01G086400 chr2A 99.662 296 0 1 1 296 669887708 669888002 1.570000e-149 540.0
24 TraesCS3A01G086400 chr5B 99.656 291 1 0 1 291 108166113 108165823 2.630000e-147 532.0
25 TraesCS3A01G086400 chr5B 83.813 278 38 5 4417 4688 640421928 640421652 1.770000e-64 257.0
26 TraesCS3A01G086400 chr6B 99.317 293 2 0 1 293 694114902 694115194 9.450000e-147 531.0
27 TraesCS3A01G086400 chr6B 81.026 195 21 13 4739 4932 142725954 142725775 1.860000e-29 141.0
28 TraesCS3A01G086400 chrUn 98.973 292 3 0 1 292 316820119 316820410 1.580000e-144 523.0
29 TraesCS3A01G086400 chrUn 98.973 292 3 0 1 292 328624838 328624547 1.580000e-144 523.0
30 TraesCS3A01G086400 chr1B 98.973 292 3 0 1 292 560333180 560333471 1.580000e-144 523.0
31 TraesCS3A01G086400 chr4B 98.966 290 3 0 1 290 57976900 57977189 2.050000e-143 520.0
32 TraesCS3A01G086400 chr6A 94.595 37 2 0 3939 3975 50345165 50345129 1.930000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G086400 chr3A 55736613 55741569 4956 False 9154.000000 9154 100.000000 1 4957 1 chr3A.!!$F1 4956
1 TraesCS3A01G086400 chr3D 43804486 43808234 3748 False 1438.666667 3650 88.993667 893 4416 3 chr3D.!!$F1 3523
2 TraesCS3A01G086400 chr3B 68588289 68591279 2990 False 1915.000000 2760 89.154500 803 3801 2 chr3B.!!$F6 2998
3 TraesCS3A01G086400 chr3B 699683580 699684124 544 False 854.000000 854 95.046000 4417 4957 1 chr3B.!!$F3 540
4 TraesCS3A01G086400 chr3B 777007385 777007929 544 True 832.000000 832 94.312000 4417 4957 1 chr3B.!!$R4 540
5 TraesCS3A01G086400 chr3B 682784890 682785426 536 False 804.000000 804 93.715000 4421 4957 1 chr3B.!!$F2 536
6 TraesCS3A01G086400 chr7B 673680828 673681331 503 False 678.000000 678 91.667000 336 818 1 chr7B.!!$F2 482
7 TraesCS3A01G086400 chr5A 84130487 84132717 2230 True 414.666667 595 91.341000 336 818 3 chr5A.!!$R1 482

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
60 61 0.173708 GCTGTCCTGGTCGGTAGAAG 59.826 60.0 1.82 0.0 0.00 2.85 F
90 91 0.183971 TGGTTCGGCAGGGAGAAAAA 59.816 50.0 0.00 0.0 0.00 1.94 F
1404 1529 0.323957 GACTGAACTTTAGGGGGCGT 59.676 55.0 0.00 0.0 0.00 5.68 F
1659 1794 0.098200 TCGATGACGACGATGGACAC 59.902 55.0 0.00 0.0 43.81 3.67 F
1809 1944 0.811616 GCATTCATCTCCGTCCGCTT 60.812 55.0 0.00 0.0 0.00 4.68 F
2720 2872 0.035630 CTTCTGCTGGCCACTAGCTT 60.036 55.0 15.70 0.0 43.05 3.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1320 1445 0.033920 TGCGCTGAAGCAGAAGAAGA 59.966 50.0 9.73 0.00 42.92 2.87 R
1610 1739 0.034380 CTGTAGGAGGGTGACGAGGA 60.034 60.0 0.00 0.00 0.00 3.71 R
2245 2395 0.107459 GAGGCTGAAGGACCATCACC 60.107 60.0 0.00 3.15 0.00 4.02 R
2599 2750 0.108186 TGCATTGCTCAGTCCTACCG 60.108 55.0 10.49 0.00 0.00 4.02 R
3629 3957 0.250513 GGATTCAGCCTTCTCACCGT 59.749 55.0 0.00 0.00 0.00 4.83 R
4008 4544 0.107993 GCTTGTAACCTACCCCGTCC 60.108 60.0 0.00 0.00 0.00 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 3.313750 GCGATGCGAGTGATCACC 58.686 61.111 22.21 12.53 0.00 4.02
36 37 1.519234 GCGATGCGAGTGATCACCA 60.519 57.895 22.21 13.47 0.00 4.17
37 38 0.877649 GCGATGCGAGTGATCACCAT 60.878 55.000 22.21 17.50 0.00 3.55
38 39 1.135046 CGATGCGAGTGATCACCATC 58.865 55.000 22.21 22.86 0.00 3.51
39 40 1.536709 CGATGCGAGTGATCACCATCA 60.537 52.381 28.13 21.16 36.62 3.07
40 41 2.133553 GATGCGAGTGATCACCATCAG 58.866 52.381 26.01 14.96 39.86 2.90
41 42 0.176449 TGCGAGTGATCACCATCAGG 59.824 55.000 22.21 6.63 39.86 3.86
42 43 1.156645 GCGAGTGATCACCATCAGGC 61.157 60.000 22.21 12.37 39.86 4.85
43 44 0.463204 CGAGTGATCACCATCAGGCT 59.537 55.000 22.21 0.54 39.86 4.58
44 45 1.805495 CGAGTGATCACCATCAGGCTG 60.805 57.143 22.21 8.58 39.86 4.85
45 46 1.209019 GAGTGATCACCATCAGGCTGT 59.791 52.381 22.21 0.00 39.86 4.40
46 47 1.209019 AGTGATCACCATCAGGCTGTC 59.791 52.381 22.21 3.16 39.86 3.51
47 48 0.543277 TGATCACCATCAGGCTGTCC 59.457 55.000 15.27 0.00 39.06 4.02
48 49 0.835941 GATCACCATCAGGCTGTCCT 59.164 55.000 15.27 0.00 45.66 3.85
56 57 2.443781 AGGCTGTCCTGGTCGGTA 59.556 61.111 1.82 0.00 42.34 4.02
57 58 1.682684 AGGCTGTCCTGGTCGGTAG 60.683 63.158 1.82 0.00 42.34 3.18
58 59 1.681327 GGCTGTCCTGGTCGGTAGA 60.681 63.158 1.82 0.00 0.00 2.59
59 60 1.255667 GGCTGTCCTGGTCGGTAGAA 61.256 60.000 1.82 0.00 0.00 2.10
60 61 0.173708 GCTGTCCTGGTCGGTAGAAG 59.826 60.000 1.82 0.00 0.00 2.85
61 62 0.173708 CTGTCCTGGTCGGTAGAAGC 59.826 60.000 0.00 0.00 0.00 3.86
62 63 0.251653 TGTCCTGGTCGGTAGAAGCT 60.252 55.000 0.00 0.00 0.00 3.74
63 64 1.005097 TGTCCTGGTCGGTAGAAGCTA 59.995 52.381 0.00 0.00 0.00 3.32
64 65 1.404748 GTCCTGGTCGGTAGAAGCTAC 59.595 57.143 0.00 0.00 0.00 3.58
65 66 0.381089 CCTGGTCGGTAGAAGCTACG 59.619 60.000 0.00 0.00 0.00 3.51
66 67 1.376543 CTGGTCGGTAGAAGCTACGA 58.623 55.000 0.00 0.00 0.00 3.43
67 68 1.331138 CTGGTCGGTAGAAGCTACGAG 59.669 57.143 0.00 0.00 35.88 4.18
68 69 0.662085 GGTCGGTAGAAGCTACGAGG 59.338 60.000 0.00 0.00 35.88 4.63
69 70 1.661341 GTCGGTAGAAGCTACGAGGA 58.339 55.000 0.00 0.00 35.88 3.71
70 71 1.330213 GTCGGTAGAAGCTACGAGGAC 59.670 57.143 0.00 0.00 35.88 3.85
71 72 1.209019 TCGGTAGAAGCTACGAGGACT 59.791 52.381 0.00 0.00 0.00 3.85
72 73 1.331138 CGGTAGAAGCTACGAGGACTG 59.669 57.143 0.00 0.00 0.00 3.51
73 74 1.677052 GGTAGAAGCTACGAGGACTGG 59.323 57.143 0.00 0.00 0.00 4.00
74 75 2.367486 GTAGAAGCTACGAGGACTGGT 58.633 52.381 0.00 0.00 0.00 4.00
75 76 1.926108 AGAAGCTACGAGGACTGGTT 58.074 50.000 0.00 0.00 0.00 3.67
76 77 1.819903 AGAAGCTACGAGGACTGGTTC 59.180 52.381 0.00 0.00 37.24 3.62
77 78 0.526662 AAGCTACGAGGACTGGTTCG 59.473 55.000 0.00 0.00 42.26 3.95
78 79 1.139095 GCTACGAGGACTGGTTCGG 59.861 63.158 0.00 0.00 40.93 4.30
79 80 1.139095 CTACGAGGACTGGTTCGGC 59.861 63.158 0.00 0.00 40.93 5.54
80 81 1.592400 CTACGAGGACTGGTTCGGCA 61.592 60.000 0.00 0.00 40.93 5.69
81 82 1.592400 TACGAGGACTGGTTCGGCAG 61.592 60.000 0.00 0.00 40.93 4.85
82 83 2.266055 GAGGACTGGTTCGGCAGG 59.734 66.667 0.00 0.00 0.00 4.85
83 84 3.316573 GAGGACTGGTTCGGCAGGG 62.317 68.421 0.00 0.00 0.00 4.45
84 85 3.319198 GGACTGGTTCGGCAGGGA 61.319 66.667 0.00 0.00 0.00 4.20
85 86 2.266055 GACTGGTTCGGCAGGGAG 59.734 66.667 0.00 0.00 0.00 4.30
86 87 2.203788 ACTGGTTCGGCAGGGAGA 60.204 61.111 0.00 0.00 0.00 3.71
87 88 1.827399 GACTGGTTCGGCAGGGAGAA 61.827 60.000 0.00 0.00 0.00 2.87
88 89 1.374947 CTGGTTCGGCAGGGAGAAA 59.625 57.895 0.00 0.00 0.00 2.52
89 90 0.250727 CTGGTTCGGCAGGGAGAAAA 60.251 55.000 0.00 0.00 0.00 2.29
90 91 0.183971 TGGTTCGGCAGGGAGAAAAA 59.816 50.000 0.00 0.00 0.00 1.94
91 92 1.203001 TGGTTCGGCAGGGAGAAAAAT 60.203 47.619 0.00 0.00 0.00 1.82
92 93 2.040545 TGGTTCGGCAGGGAGAAAAATA 59.959 45.455 0.00 0.00 0.00 1.40
93 94 2.683362 GGTTCGGCAGGGAGAAAAATAG 59.317 50.000 0.00 0.00 0.00 1.73
94 95 2.683362 GTTCGGCAGGGAGAAAAATAGG 59.317 50.000 0.00 0.00 0.00 2.57
95 96 1.025041 CGGCAGGGAGAAAAATAGGC 58.975 55.000 0.00 0.00 0.00 3.93
96 97 1.681780 CGGCAGGGAGAAAAATAGGCA 60.682 52.381 0.00 0.00 0.00 4.75
97 98 2.456577 GGCAGGGAGAAAAATAGGCAA 58.543 47.619 0.00 0.00 0.00 4.52
98 99 3.033909 GGCAGGGAGAAAAATAGGCAAT 58.966 45.455 0.00 0.00 0.00 3.56
99 100 4.215109 GGCAGGGAGAAAAATAGGCAATA 58.785 43.478 0.00 0.00 0.00 1.90
100 101 4.649218 GGCAGGGAGAAAAATAGGCAATAA 59.351 41.667 0.00 0.00 0.00 1.40
101 102 5.128663 GGCAGGGAGAAAAATAGGCAATAAA 59.871 40.000 0.00 0.00 0.00 1.40
102 103 6.351796 GGCAGGGAGAAAAATAGGCAATAAAA 60.352 38.462 0.00 0.00 0.00 1.52
103 104 7.102993 GCAGGGAGAAAAATAGGCAATAAAAA 58.897 34.615 0.00 0.00 0.00 1.94
121 122 2.389962 AAACCATTGATGTGGCATGC 57.610 45.000 9.90 9.90 43.27 4.06
122 123 0.538118 AACCATTGATGTGGCATGCC 59.462 50.000 30.54 30.54 43.27 4.40
123 124 0.615261 ACCATTGATGTGGCATGCCA 60.615 50.000 35.59 35.59 43.27 4.92
131 132 4.746309 TGGCATGCCAGCTGGACC 62.746 66.667 35.59 27.86 41.89 4.46
132 133 4.746309 GGCATGCCAGCTGGACCA 62.746 66.667 37.21 25.13 37.39 4.02
133 134 3.138798 GCATGCCAGCTGGACCAG 61.139 66.667 37.21 21.69 37.39 4.00
134 135 2.672908 CATGCCAGCTGGACCAGA 59.327 61.111 37.21 13.73 37.39 3.86
135 136 1.748122 CATGCCAGCTGGACCAGAC 60.748 63.158 37.21 17.63 37.39 3.51
136 137 2.226315 ATGCCAGCTGGACCAGACA 61.226 57.895 37.21 22.84 37.39 3.41
137 138 1.782201 ATGCCAGCTGGACCAGACAA 61.782 55.000 37.21 10.61 37.39 3.18
138 139 1.001641 GCCAGCTGGACCAGACAAT 60.002 57.895 37.21 4.42 37.39 2.71
139 140 0.610232 GCCAGCTGGACCAGACAATT 60.610 55.000 37.21 1.52 37.39 2.32
140 141 1.171308 CCAGCTGGACCAGACAATTG 58.829 55.000 29.88 13.16 37.39 2.32
141 142 1.271543 CCAGCTGGACCAGACAATTGA 60.272 52.381 29.88 0.00 37.39 2.57
142 143 2.507484 CAGCTGGACCAGACAATTGAA 58.493 47.619 26.25 0.00 32.44 2.69
143 144 2.886523 CAGCTGGACCAGACAATTGAAA 59.113 45.455 26.25 0.00 32.44 2.69
144 145 2.887152 AGCTGGACCAGACAATTGAAAC 59.113 45.455 26.25 2.99 32.44 2.78
145 146 2.887152 GCTGGACCAGACAATTGAAACT 59.113 45.455 26.25 5.65 32.44 2.66
146 147 3.319122 GCTGGACCAGACAATTGAAACTT 59.681 43.478 26.25 0.00 32.44 2.66
147 148 4.794003 GCTGGACCAGACAATTGAAACTTG 60.794 45.833 26.25 6.96 32.44 3.16
148 149 4.277476 TGGACCAGACAATTGAAACTTGT 58.723 39.130 13.59 9.87 39.46 3.16
154 155 4.545823 GACAATTGAAACTTGTCGGTCA 57.454 40.909 13.59 0.00 42.02 4.02
155 156 4.527564 GACAATTGAAACTTGTCGGTCAG 58.472 43.478 13.59 0.00 42.02 3.51
156 157 4.196193 ACAATTGAAACTTGTCGGTCAGA 58.804 39.130 13.59 0.00 31.29 3.27
157 158 4.638421 ACAATTGAAACTTGTCGGTCAGAA 59.362 37.500 13.59 0.00 31.29 3.02
158 159 4.813296 ATTGAAACTTGTCGGTCAGAAC 57.187 40.909 0.00 0.00 0.00 3.01
159 160 3.254470 TGAAACTTGTCGGTCAGAACA 57.746 42.857 0.00 0.00 0.00 3.18
160 161 2.933906 TGAAACTTGTCGGTCAGAACAC 59.066 45.455 0.00 0.00 0.00 3.32
161 162 2.684001 AACTTGTCGGTCAGAACACA 57.316 45.000 0.00 0.00 0.00 3.72
162 163 2.684001 ACTTGTCGGTCAGAACACAA 57.316 45.000 4.16 4.16 0.00 3.33
163 164 2.980568 ACTTGTCGGTCAGAACACAAA 58.019 42.857 5.37 0.00 0.00 2.83
164 165 3.340034 ACTTGTCGGTCAGAACACAAAA 58.660 40.909 5.37 0.00 0.00 2.44
165 166 3.945285 ACTTGTCGGTCAGAACACAAAAT 59.055 39.130 5.37 0.00 0.00 1.82
166 167 4.035208 ACTTGTCGGTCAGAACACAAAATC 59.965 41.667 5.37 0.00 0.00 2.17
167 168 3.804036 TGTCGGTCAGAACACAAAATCT 58.196 40.909 0.00 0.00 0.00 2.40
168 169 3.807622 TGTCGGTCAGAACACAAAATCTC 59.192 43.478 0.00 0.00 0.00 2.75
169 170 3.057019 TCGGTCAGAACACAAAATCTCG 58.943 45.455 0.00 0.00 0.00 4.04
170 171 2.411547 CGGTCAGAACACAAAATCTCGC 60.412 50.000 0.00 0.00 0.00 5.03
171 172 2.808543 GGTCAGAACACAAAATCTCGCT 59.191 45.455 0.00 0.00 0.00 4.93
172 173 3.994392 GGTCAGAACACAAAATCTCGCTA 59.006 43.478 0.00 0.00 0.00 4.26
173 174 4.451096 GGTCAGAACACAAAATCTCGCTAA 59.549 41.667 0.00 0.00 0.00 3.09
174 175 5.049680 GGTCAGAACACAAAATCTCGCTAAA 60.050 40.000 0.00 0.00 0.00 1.85
175 176 5.846473 GTCAGAACACAAAATCTCGCTAAAC 59.154 40.000 0.00 0.00 0.00 2.01
176 177 5.525745 TCAGAACACAAAATCTCGCTAAACA 59.474 36.000 0.00 0.00 0.00 2.83
177 178 5.848036 CAGAACACAAAATCTCGCTAAACAG 59.152 40.000 0.00 0.00 0.00 3.16
178 179 4.749245 ACACAAAATCTCGCTAAACAGG 57.251 40.909 0.00 0.00 0.00 4.00
179 180 3.502211 ACACAAAATCTCGCTAAACAGGG 59.498 43.478 0.00 0.00 0.00 4.45
180 181 3.502211 CACAAAATCTCGCTAAACAGGGT 59.498 43.478 0.00 0.00 0.00 4.34
181 182 4.693566 CACAAAATCTCGCTAAACAGGGTA 59.306 41.667 0.00 0.00 0.00 3.69
182 183 5.180492 CACAAAATCTCGCTAAACAGGGTAA 59.820 40.000 0.00 0.00 0.00 2.85
183 184 5.766174 ACAAAATCTCGCTAAACAGGGTAAA 59.234 36.000 0.00 0.00 0.00 2.01
184 185 6.433093 ACAAAATCTCGCTAAACAGGGTAAAT 59.567 34.615 0.00 0.00 0.00 1.40
185 186 7.039993 ACAAAATCTCGCTAAACAGGGTAAATT 60.040 33.333 0.00 0.00 0.00 1.82
186 187 6.679327 AATCTCGCTAAACAGGGTAAATTC 57.321 37.500 0.00 0.00 0.00 2.17
187 188 5.416271 TCTCGCTAAACAGGGTAAATTCT 57.584 39.130 0.00 0.00 0.00 2.40
188 189 5.175859 TCTCGCTAAACAGGGTAAATTCTG 58.824 41.667 0.00 0.00 37.07 3.02
189 190 4.258543 TCGCTAAACAGGGTAAATTCTGG 58.741 43.478 0.00 0.00 35.47 3.86
190 191 3.181500 CGCTAAACAGGGTAAATTCTGGC 60.181 47.826 0.00 0.00 35.47 4.85
191 192 3.761752 GCTAAACAGGGTAAATTCTGGCA 59.238 43.478 0.00 0.00 35.47 4.92
192 193 4.142381 GCTAAACAGGGTAAATTCTGGCAG 60.142 45.833 8.58 8.58 35.47 4.85
193 194 3.806949 AACAGGGTAAATTCTGGCAGA 57.193 42.857 14.43 14.43 35.47 4.26
194 195 3.806949 ACAGGGTAAATTCTGGCAGAA 57.193 42.857 30.29 30.29 38.78 3.02
195 196 3.421844 ACAGGGTAAATTCTGGCAGAAC 58.578 45.455 30.71 19.00 37.00 3.01
196 197 3.074538 ACAGGGTAAATTCTGGCAGAACT 59.925 43.478 30.71 19.21 37.00 3.01
197 198 4.082125 CAGGGTAAATTCTGGCAGAACTT 58.918 43.478 30.71 27.61 37.00 2.66
198 199 4.524328 CAGGGTAAATTCTGGCAGAACTTT 59.476 41.667 30.71 27.71 37.00 2.66
199 200 5.011023 CAGGGTAAATTCTGGCAGAACTTTT 59.989 40.000 30.71 26.91 37.00 2.27
200 201 5.011023 AGGGTAAATTCTGGCAGAACTTTTG 59.989 40.000 30.71 0.00 37.00 2.44
201 202 4.686091 GGTAAATTCTGGCAGAACTTTTGC 59.314 41.667 30.71 26.79 37.00 3.68
202 203 4.677673 AAATTCTGGCAGAACTTTTGCT 57.322 36.364 30.71 11.58 37.00 3.91
203 204 5.789643 AAATTCTGGCAGAACTTTTGCTA 57.210 34.783 30.71 7.16 37.00 3.49
204 205 5.789643 AATTCTGGCAGAACTTTTGCTAA 57.210 34.783 30.71 6.37 37.00 3.09
205 206 5.789643 ATTCTGGCAGAACTTTTGCTAAA 57.210 34.783 30.71 5.81 37.00 1.85
206 207 5.789643 TTCTGGCAGAACTTTTGCTAAAT 57.210 34.783 25.38 0.00 41.27 1.40
207 208 5.125100 TCTGGCAGAACTTTTGCTAAATG 57.875 39.130 16.28 0.00 41.27 2.32
208 209 4.022068 TCTGGCAGAACTTTTGCTAAATGG 60.022 41.667 16.28 0.00 41.27 3.16
209 210 3.006752 TGGCAGAACTTTTGCTAAATGGG 59.993 43.478 4.43 0.00 41.27 4.00
210 211 3.588955 GCAGAACTTTTGCTAAATGGGG 58.411 45.455 0.00 0.00 38.51 4.96
211 212 3.006859 GCAGAACTTTTGCTAAATGGGGT 59.993 43.478 0.00 0.00 38.51 4.95
212 213 4.219725 GCAGAACTTTTGCTAAATGGGGTA 59.780 41.667 0.00 0.00 38.51 3.69
213 214 5.279256 GCAGAACTTTTGCTAAATGGGGTAA 60.279 40.000 0.00 0.00 38.51 2.85
214 215 6.740122 GCAGAACTTTTGCTAAATGGGGTAAA 60.740 38.462 0.00 0.00 38.51 2.01
215 216 7.213678 CAGAACTTTTGCTAAATGGGGTAAAA 58.786 34.615 0.00 0.00 0.00 1.52
216 217 7.170828 CAGAACTTTTGCTAAATGGGGTAAAAC 59.829 37.037 0.00 0.00 0.00 2.43
217 218 5.534407 ACTTTTGCTAAATGGGGTAAAACG 58.466 37.500 0.00 0.00 0.00 3.60
218 219 4.522722 TTTGCTAAATGGGGTAAAACGG 57.477 40.909 0.00 0.00 0.00 4.44
219 220 3.436577 TGCTAAATGGGGTAAAACGGA 57.563 42.857 0.00 0.00 0.00 4.69
220 221 3.083293 TGCTAAATGGGGTAAAACGGAC 58.917 45.455 0.00 0.00 0.00 4.79
221 222 3.083293 GCTAAATGGGGTAAAACGGACA 58.917 45.455 0.00 0.00 0.00 4.02
222 223 3.506844 GCTAAATGGGGTAAAACGGACAA 59.493 43.478 0.00 0.00 0.00 3.18
223 224 4.022155 GCTAAATGGGGTAAAACGGACAAA 60.022 41.667 0.00 0.00 0.00 2.83
224 225 5.509332 GCTAAATGGGGTAAAACGGACAAAA 60.509 40.000 0.00 0.00 0.00 2.44
225 226 5.554437 AAATGGGGTAAAACGGACAAAAT 57.446 34.783 0.00 0.00 0.00 1.82
226 227 4.794278 ATGGGGTAAAACGGACAAAATC 57.206 40.909 0.00 0.00 0.00 2.17
227 228 3.834938 TGGGGTAAAACGGACAAAATCT 58.165 40.909 0.00 0.00 0.00 2.40
228 229 3.822167 TGGGGTAAAACGGACAAAATCTC 59.178 43.478 0.00 0.00 0.00 2.75
229 230 3.120095 GGGGTAAAACGGACAAAATCTCG 60.120 47.826 0.00 0.00 0.00 4.04
230 231 3.485633 GGTAAAACGGACAAAATCTCGC 58.514 45.455 0.00 0.00 0.00 5.03
231 232 3.187842 GGTAAAACGGACAAAATCTCGCT 59.812 43.478 0.00 0.00 0.00 4.93
232 233 4.389687 GGTAAAACGGACAAAATCTCGCTA 59.610 41.667 0.00 0.00 0.00 4.26
233 234 5.106987 GGTAAAACGGACAAAATCTCGCTAA 60.107 40.000 0.00 0.00 0.00 3.09
234 235 5.427036 AAAACGGACAAAATCTCGCTAAA 57.573 34.783 0.00 0.00 0.00 1.85
235 236 5.622770 AAACGGACAAAATCTCGCTAAAT 57.377 34.783 0.00 0.00 0.00 1.40
236 237 6.730960 AAACGGACAAAATCTCGCTAAATA 57.269 33.333 0.00 0.00 0.00 1.40
237 238 5.968387 ACGGACAAAATCTCGCTAAATAG 57.032 39.130 0.00 0.00 0.00 1.73
238 239 4.809426 ACGGACAAAATCTCGCTAAATAGG 59.191 41.667 0.00 0.00 0.00 2.57
239 240 4.211374 CGGACAAAATCTCGCTAAATAGGG 59.789 45.833 0.00 0.00 37.58 3.53
240 241 5.123936 GGACAAAATCTCGCTAAATAGGGT 58.876 41.667 4.67 0.00 37.50 4.34
241 242 6.285990 GGACAAAATCTCGCTAAATAGGGTA 58.714 40.000 4.67 0.00 37.50 3.69
242 243 6.764560 GGACAAAATCTCGCTAAATAGGGTAA 59.235 38.462 4.67 0.00 37.50 2.85
243 244 7.444487 GGACAAAATCTCGCTAAATAGGGTAAT 59.556 37.037 4.67 0.00 37.50 1.89
244 245 8.747538 ACAAAATCTCGCTAAATAGGGTAATT 57.252 30.769 4.67 3.85 37.50 1.40
245 246 9.841295 ACAAAATCTCGCTAAATAGGGTAATTA 57.159 29.630 4.67 0.00 37.50 1.40
248 249 9.490379 AAATCTCGCTAAATAGGGTAATTAGTG 57.510 33.333 4.67 0.00 38.09 2.74
249 250 7.592885 TCTCGCTAAATAGGGTAATTAGTGT 57.407 36.000 4.67 0.00 38.00 3.55
250 251 8.015185 TCTCGCTAAATAGGGTAATTAGTGTT 57.985 34.615 4.67 0.00 38.00 3.32
251 252 9.135189 TCTCGCTAAATAGGGTAATTAGTGTTA 57.865 33.333 4.67 0.00 38.00 2.41
252 253 9.754382 CTCGCTAAATAGGGTAATTAGTGTTAA 57.246 33.333 4.67 0.00 38.00 2.01
262 263 9.802039 AGGGTAATTAGTGTTAAAAATGTCAGA 57.198 29.630 0.00 0.00 0.00 3.27
270 271 8.567285 AGTGTTAAAAATGTCAGAATAGAGGG 57.433 34.615 0.00 0.00 0.00 4.30
271 272 8.164070 AGTGTTAAAAATGTCAGAATAGAGGGT 58.836 33.333 0.00 0.00 0.00 4.34
272 273 9.444600 GTGTTAAAAATGTCAGAATAGAGGGTA 57.555 33.333 0.00 0.00 0.00 3.69
278 279 7.939784 AATGTCAGAATAGAGGGTAAAAACC 57.060 36.000 0.00 0.00 0.00 3.27
279 280 6.442541 TGTCAGAATAGAGGGTAAAAACCA 57.557 37.500 0.00 0.00 0.00 3.67
280 281 6.472887 TGTCAGAATAGAGGGTAAAAACCAG 58.527 40.000 0.00 0.00 0.00 4.00
281 282 6.271391 TGTCAGAATAGAGGGTAAAAACCAGA 59.729 38.462 0.00 0.00 0.00 3.86
282 283 7.166167 GTCAGAATAGAGGGTAAAAACCAGAA 58.834 38.462 0.00 0.00 0.00 3.02
283 284 7.829706 GTCAGAATAGAGGGTAAAAACCAGAAT 59.170 37.037 0.00 0.00 0.00 2.40
284 285 8.390921 TCAGAATAGAGGGTAAAAACCAGAATT 58.609 33.333 0.00 0.00 0.00 2.17
285 286 9.025041 CAGAATAGAGGGTAAAAACCAGAATTT 57.975 33.333 0.00 0.00 0.00 1.82
289 290 7.997773 AGAGGGTAAAAACCAGAATTTACTC 57.002 36.000 7.95 4.71 40.96 2.59
321 322 7.933215 AACAACAGTTTACAAGGTTTACTCT 57.067 32.000 0.00 0.00 0.00 3.24
322 323 7.933215 ACAACAGTTTACAAGGTTTACTCTT 57.067 32.000 0.00 0.00 0.00 2.85
323 324 9.452287 AACAACAGTTTACAAGGTTTACTCTTA 57.548 29.630 0.00 0.00 0.00 2.10
324 325 9.623000 ACAACAGTTTACAAGGTTTACTCTTAT 57.377 29.630 0.00 0.00 0.00 1.73
405 412 0.788391 GTCAACGAGCTTACCAACCG 59.212 55.000 0.00 0.00 0.00 4.44
506 513 6.984740 TGATTACAAGAACGAAAACAATGC 57.015 33.333 0.00 0.00 0.00 3.56
528 535 9.432982 AATGCTTAAATATGACCTTCCCAATTA 57.567 29.630 0.00 0.00 0.00 1.40
562 569 2.162208 CCACGCACTCTGCAAATAATGT 59.838 45.455 0.00 0.00 45.36 2.71
612 634 7.580495 AGTTGATTACTTGGAGAGAATCTGACC 60.580 40.741 0.00 0.00 39.18 4.02
629 651 1.241315 ACCCCGCTTCAATTCGGTTG 61.241 55.000 3.00 0.00 43.87 3.77
669 691 7.164122 GGCAAATGATAGTCCATCTCTCATAA 58.836 38.462 0.00 0.00 38.48 1.90
671 693 7.877097 GCAAATGATAGTCCATCTCTCATAACT 59.123 37.037 0.00 0.00 38.48 2.24
676 698 8.103935 TGATAGTCCATCTCTCATAACTATCGT 58.896 37.037 12.91 0.00 44.19 3.73
832 854 8.412456 GTTTAACTCTGTATCCCCTACTTCTAC 58.588 40.741 0.00 0.00 0.00 2.59
922 962 5.189928 ACTAAATAAATCCGGTGCACATCA 58.810 37.500 20.43 0.68 0.00 3.07
923 963 4.370364 AAATAAATCCGGTGCACATCAC 57.630 40.909 20.43 0.00 44.90 3.06
981 1029 1.533273 GGTATCCTCTGCCCGGCTA 60.533 63.158 11.61 0.00 0.00 3.93
992 1040 2.604991 CCGGCTATCCCCTCCTCC 60.605 72.222 0.00 0.00 0.00 4.30
1080 1203 0.747283 TTCCTCCTACTCTCGGCGAC 60.747 60.000 4.99 0.00 0.00 5.19
1083 1206 1.492319 CTCCTACTCTCGGCGACTCG 61.492 65.000 4.99 0.00 0.00 4.18
1089 1212 3.125573 CTCGGCGACTCGTCTCCA 61.126 66.667 4.99 0.00 34.24 3.86
1096 1219 1.668919 GCGACTCGTCTCCACAATTCA 60.669 52.381 0.00 0.00 0.00 2.57
1097 1220 1.986378 CGACTCGTCTCCACAATTCAC 59.014 52.381 0.00 0.00 0.00 3.18
1116 1239 3.060615 CCCCCTCTTCGTCGTCGT 61.061 66.667 1.33 0.00 38.33 4.34
1117 1240 2.484203 CCCCTCTTCGTCGTCGTC 59.516 66.667 1.33 0.00 38.33 4.20
1118 1241 2.097918 CCCTCTTCGTCGTCGTCG 59.902 66.667 5.50 5.50 38.33 5.12
1119 1242 2.097918 CCTCTTCGTCGTCGTCGG 59.902 66.667 11.74 0.00 38.33 4.79
1245 1370 6.346838 CCGATTGATTGATTCGATTCGATTCA 60.347 38.462 22.80 22.80 41.98 2.57
1248 1373 4.209080 TGATTGATTCGATTCGATTCACCG 59.791 41.667 25.15 0.00 42.87 4.94
1250 1375 2.100087 TGATTCGATTCGATTCACCGGA 59.900 45.455 22.80 6.67 39.94 5.14
1275 1400 4.065789 GTTCCTTTGTTCGTCTCATCCTT 58.934 43.478 0.00 0.00 0.00 3.36
1316 1441 2.366533 TCGATTCGAGTAGGTGCTTCT 58.633 47.619 4.29 0.00 0.00 2.85
1317 1442 2.753452 TCGATTCGAGTAGGTGCTTCTT 59.247 45.455 4.29 0.00 0.00 2.52
1318 1443 3.109619 CGATTCGAGTAGGTGCTTCTTC 58.890 50.000 0.00 0.00 0.00 2.87
1319 1444 3.181495 CGATTCGAGTAGGTGCTTCTTCT 60.181 47.826 0.00 0.00 0.00 2.85
1320 1445 4.675671 CGATTCGAGTAGGTGCTTCTTCTT 60.676 45.833 0.00 0.00 0.00 2.52
1321 1446 3.851976 TCGAGTAGGTGCTTCTTCTTC 57.148 47.619 0.00 0.00 0.00 2.87
1322 1447 3.422796 TCGAGTAGGTGCTTCTTCTTCT 58.577 45.455 0.00 0.00 0.00 2.85
1323 1448 3.827302 TCGAGTAGGTGCTTCTTCTTCTT 59.173 43.478 0.00 0.00 0.00 2.52
1324 1449 4.082679 TCGAGTAGGTGCTTCTTCTTCTTC 60.083 45.833 0.00 0.00 0.00 2.87
1395 1520 2.176798 TGACCCCATTGGACTGAACTTT 59.823 45.455 3.62 0.00 38.00 2.66
1402 1527 0.696501 TGGACTGAACTTTAGGGGGC 59.303 55.000 0.00 0.00 0.00 5.80
1404 1529 0.323957 GACTGAACTTTAGGGGGCGT 59.676 55.000 0.00 0.00 0.00 5.68
1405 1530 1.551883 GACTGAACTTTAGGGGGCGTA 59.448 52.381 0.00 0.00 0.00 4.42
1438 1563 2.958355 CCAATTCGCCATGGTAATTCCT 59.042 45.455 14.67 0.00 37.07 3.36
1439 1564 3.243501 CCAATTCGCCATGGTAATTCCTG 60.244 47.826 14.67 8.87 37.07 3.86
1440 1565 1.388547 TTCGCCATGGTAATTCCTGC 58.611 50.000 14.67 0.00 37.07 4.85
1447 1572 3.312421 CCATGGTAATTCCTGCTTACACG 59.688 47.826 2.57 0.00 37.07 4.49
1450 1575 2.608090 GGTAATTCCTGCTTACACGAGC 59.392 50.000 0.00 0.00 43.00 5.03
1457 1582 2.667318 GCTTACACGAGCTGCGCAA 61.667 57.895 13.05 0.00 46.04 4.85
1460 1585 1.565156 TTACACGAGCTGCGCAAAGG 61.565 55.000 13.05 0.00 46.04 3.11
1470 1595 3.065925 AGCTGCGCAAAGGAATCTAATTC 59.934 43.478 13.05 0.00 38.55 2.17
1478 1603 7.414098 GCGCAAAGGAATCTAATTCTGTTTCTA 60.414 37.037 0.30 0.00 39.24 2.10
1500 1625 4.527509 ACCTTCTGTGTGTGATAGAGTG 57.472 45.455 0.00 0.00 0.00 3.51
1510 1635 4.462834 TGTGTGATAGAGTGTCCTTACCTG 59.537 45.833 0.00 0.00 0.00 4.00
1514 1639 1.562783 AGAGTGTCCTTACCTGCCTC 58.437 55.000 0.00 0.00 0.00 4.70
1515 1640 1.077993 AGAGTGTCCTTACCTGCCTCT 59.922 52.381 0.00 0.00 0.00 3.69
1516 1641 1.205893 GAGTGTCCTTACCTGCCTCTG 59.794 57.143 0.00 0.00 0.00 3.35
1522 1647 3.502595 GTCCTTACCTGCCTCTGTTTTTC 59.497 47.826 0.00 0.00 0.00 2.29
1626 1755 1.143277 GAGATCCTCGTCACCCTCCTA 59.857 57.143 0.00 0.00 0.00 2.94
1632 1761 1.215647 CGTCACCCTCCTACAGCAC 59.784 63.158 0.00 0.00 0.00 4.40
1633 1762 1.532604 CGTCACCCTCCTACAGCACA 61.533 60.000 0.00 0.00 0.00 4.57
1635 1764 1.078848 CACCCTCCTACAGCACAGC 60.079 63.158 0.00 0.00 0.00 4.40
1640 1769 1.479709 CTCCTACAGCACAGCTACCT 58.520 55.000 0.00 0.00 36.40 3.08
1655 1790 0.942252 TACCTCGATGACGACGATGG 59.058 55.000 0.00 0.00 43.81 3.51
1659 1794 0.098200 TCGATGACGACGATGGACAC 59.902 55.000 0.00 0.00 43.81 3.67
1680 1815 2.712539 CGCGCCACAACTGAAACA 59.287 55.556 0.00 0.00 0.00 2.83
1681 1816 1.063327 CGCGCCACAACTGAAACAA 59.937 52.632 0.00 0.00 0.00 2.83
1685 1820 1.594518 CGCCACAACTGAAACAAGTCG 60.595 52.381 0.00 0.00 0.00 4.18
1734 1869 0.916358 AGCCCACCAGCTCCTACAAT 60.916 55.000 0.00 0.00 39.48 2.71
1806 1941 1.143305 GATGCATTCATCTCCGTCCG 58.857 55.000 0.00 0.00 44.38 4.79
1807 1942 0.882042 ATGCATTCATCTCCGTCCGC 60.882 55.000 0.00 0.00 0.00 5.54
1808 1943 1.227380 GCATTCATCTCCGTCCGCT 60.227 57.895 0.00 0.00 0.00 5.52
1809 1944 0.811616 GCATTCATCTCCGTCCGCTT 60.812 55.000 0.00 0.00 0.00 4.68
1810 1945 1.212616 CATTCATCTCCGTCCGCTTC 58.787 55.000 0.00 0.00 0.00 3.86
1811 1946 0.824109 ATTCATCTCCGTCCGCTTCA 59.176 50.000 0.00 0.00 0.00 3.02
1838 1973 2.068519 TGACATGCTAAAGTCACTGCG 58.931 47.619 0.00 0.00 39.65 5.18
1845 1980 2.089887 TAAAGTCACTGCGGCGACCA 62.090 55.000 12.98 0.00 32.33 4.02
1871 2007 6.551736 TCCGTTTGCTAATTTTATCTGCTTC 58.448 36.000 0.00 0.00 0.00 3.86
1913 2049 1.079127 CGAATCTGTTGGCGAGGGT 60.079 57.895 0.00 0.00 0.00 4.34
1968 2104 2.293677 GACAGCCATGTATGTCGTCA 57.706 50.000 10.68 0.00 40.68 4.35
1970 2106 2.346803 ACAGCCATGTATGTCGTCAAC 58.653 47.619 0.00 0.00 38.09 3.18
1978 2126 3.433343 TGTATGTCGTCAACCTCCCTTA 58.567 45.455 0.00 0.00 0.00 2.69
2040 2188 3.894427 ACATGTCTACACCATGCCAAAAA 59.106 39.130 0.00 0.00 42.74 1.94
2041 2189 4.527816 ACATGTCTACACCATGCCAAAAAT 59.472 37.500 0.00 0.00 42.74 1.82
2044 2192 4.236935 GTCTACACCATGCCAAAAATGTG 58.763 43.478 0.00 0.00 0.00 3.21
2125 2273 7.158697 TGCTATATATTTAACTCGCCACACAT 58.841 34.615 0.00 0.00 0.00 3.21
2126 2274 8.308207 TGCTATATATTTAACTCGCCACACATA 58.692 33.333 0.00 0.00 0.00 2.29
2127 2275 8.808529 GCTATATATTTAACTCGCCACACATAG 58.191 37.037 0.00 0.00 0.00 2.23
2128 2276 9.302345 CTATATATTTAACTCGCCACACATAGG 57.698 37.037 0.00 0.00 0.00 2.57
2163 2312 7.080724 GGCTAAATTCAGAGCTGTTATTATGC 58.919 38.462 0.00 0.00 38.79 3.14
2189 2338 6.162777 TGCCCTGTTTTGAATTTAGTTATGC 58.837 36.000 0.00 0.00 0.00 3.14
2245 2395 3.430556 TGTGTTGTGGAATTATGACGACG 59.569 43.478 0.00 0.00 0.00 5.12
2268 2418 1.412343 GATGGTCCTTCAGCCTCTCTC 59.588 57.143 0.00 0.00 0.00 3.20
2295 2445 2.300152 AGCGAGAAATGAGACAGGTGAA 59.700 45.455 0.00 0.00 0.00 3.18
2296 2446 3.055530 AGCGAGAAATGAGACAGGTGAAT 60.056 43.478 0.00 0.00 0.00 2.57
2297 2447 3.063180 GCGAGAAATGAGACAGGTGAATG 59.937 47.826 0.00 0.00 0.00 2.67
2298 2448 4.498241 CGAGAAATGAGACAGGTGAATGA 58.502 43.478 0.00 0.00 0.00 2.57
2299 2449 4.931601 CGAGAAATGAGACAGGTGAATGAA 59.068 41.667 0.00 0.00 0.00 2.57
2320 2470 9.590451 AATGAATCATTCTTGATGCGTTTATTT 57.410 25.926 2.07 0.00 42.27 1.40
2321 2471 8.397215 TGAATCATTCTTGATGCGTTTATTTG 57.603 30.769 0.00 0.00 41.83 2.32
2322 2472 6.817270 ATCATTCTTGATGCGTTTATTTGC 57.183 33.333 0.00 0.00 41.12 3.68
2323 2473 5.953183 TCATTCTTGATGCGTTTATTTGCT 58.047 33.333 0.00 0.00 35.64 3.91
2324 2474 5.801444 TCATTCTTGATGCGTTTATTTGCTG 59.199 36.000 0.00 0.00 35.64 4.41
2334 2484 6.714492 TGCGTTTATTTGCTGTATCATGTAG 58.286 36.000 0.00 0.00 0.00 2.74
2357 2507 3.444742 TGATTAGGCAGATGCTTGTTTGG 59.555 43.478 4.59 0.00 41.70 3.28
2381 2531 5.297569 ACAAAGAGTTTGAGGCTACTTCT 57.702 39.130 6.40 0.00 43.26 2.85
2398 2548 3.485463 TTCTTGAGAAGAAAAGCGGGA 57.515 42.857 0.00 0.00 44.10 5.14
2453 2603 8.253113 CCTTTGCTATGGTCAAATAGTCAAATT 58.747 33.333 10.98 0.00 36.59 1.82
2504 2654 9.552114 CTCTAAACACATCATTAGCAAAAAGAG 57.448 33.333 0.00 0.00 0.00 2.85
2545 2695 3.156511 TGATCTCTCATCTCACGCAAC 57.843 47.619 0.00 0.00 0.00 4.17
2599 2750 7.113658 CGTCTGAATTTGTGAAGATATTCGAC 58.886 38.462 0.00 0.00 33.03 4.20
2633 2784 3.756069 CAATGCAAAGCTTCTAGCAGTC 58.244 45.455 20.82 0.00 45.56 3.51
2691 2843 8.251026 GCTTGTAACCTGGATTTAGCTATTTTT 58.749 33.333 0.00 0.00 0.00 1.94
2694 2846 7.672239 TGTAACCTGGATTTAGCTATTTTTGGT 59.328 33.333 0.00 0.00 0.00 3.67
2720 2872 0.035630 CTTCTGCTGGCCACTAGCTT 60.036 55.000 15.70 0.00 43.05 3.74
2781 2970 3.369052 CCTCATGCATGCCTGTTTGAAAT 60.369 43.478 22.25 0.00 0.00 2.17
2836 3148 8.958506 CCATCTTCTTTCAGATCTTCAGAAAAT 58.041 33.333 7.79 0.15 32.71 1.82
2915 3227 2.037902 TGATACACCAGTTTCGAAGCCA 59.962 45.455 8.51 0.00 0.00 4.75
3130 3442 0.901124 GAGAGAGCTGCCTTGGAGAA 59.099 55.000 0.00 0.00 0.00 2.87
3187 3502 1.275291 TCCCACGAGTAAAGAAGCAGG 59.725 52.381 0.00 0.00 0.00 4.85
3188 3503 1.676014 CCCACGAGTAAAGAAGCAGGG 60.676 57.143 0.00 0.00 0.00 4.45
3213 3528 2.047061 ACAACTCAAGCTCACCTGGTA 58.953 47.619 0.00 0.00 0.00 3.25
3223 3538 1.183030 TCACCTGGTAGTGGTCCGTG 61.183 60.000 0.00 0.00 38.34 4.94
3237 3552 4.185413 CGTGTCGGAACCCATCTG 57.815 61.111 0.00 0.00 35.59 2.90
3344 3659 2.046892 CGGCTCCCTGGTGTTGAG 60.047 66.667 0.00 0.00 0.00 3.02
3347 3662 0.393537 GGCTCCCTGGTGTTGAGATG 60.394 60.000 2.35 0.00 0.00 2.90
3488 3809 0.107508 TGTGCCAGCCTGCTCTTATC 60.108 55.000 0.00 0.00 0.00 1.75
3489 3810 0.179936 GTGCCAGCCTGCTCTTATCT 59.820 55.000 0.00 0.00 0.00 1.98
3490 3811 0.914644 TGCCAGCCTGCTCTTATCTT 59.085 50.000 0.00 0.00 0.00 2.40
3491 3812 2.118679 TGCCAGCCTGCTCTTATCTTA 58.881 47.619 0.00 0.00 0.00 2.10
3492 3813 2.707791 TGCCAGCCTGCTCTTATCTTAT 59.292 45.455 0.00 0.00 0.00 1.73
3499 3820 4.802248 GCCTGCTCTTATCTTATGGAGTGG 60.802 50.000 0.00 0.00 0.00 4.00
3543 3864 3.428589 GCAGATGAAAGGATTGGCTGTTC 60.429 47.826 0.00 0.00 0.00 3.18
3546 3867 4.834496 AGATGAAAGGATTGGCTGTTCAAA 59.166 37.500 0.00 0.00 32.36 2.69
3568 3896 3.027170 GCCGGTGTGAGACAATGCG 62.027 63.158 1.90 0.00 0.00 4.73
3580 3908 1.733360 GACAATGCGCCGTAACCTTTA 59.267 47.619 4.18 0.00 0.00 1.85
3598 3926 4.158579 CCTTTATTTTGCCTCCCTTGACTC 59.841 45.833 0.00 0.00 0.00 3.36
3629 3957 2.306847 GAAGAAAAACCTGAGGGCACA 58.693 47.619 2.38 0.00 35.63 4.57
3633 3961 2.279037 AAAACCTGAGGGCACACGGT 62.279 55.000 2.38 0.00 35.63 4.83
3687 4015 7.254932 CCCTGTTAGAATTAGAATTGTGCTAGC 60.255 40.741 8.10 8.10 0.00 3.42
3695 4031 6.968131 TTAGAATTGTGCTAGCAAGTAGTG 57.032 37.500 21.29 0.00 0.00 2.74
3703 4039 2.289444 GCTAGCAAGTAGTGGTGTTGGA 60.289 50.000 10.63 0.00 38.75 3.53
3706 4042 2.106511 AGCAAGTAGTGGTGTTGGATGT 59.893 45.455 0.00 0.00 36.32 3.06
3750 4086 2.062177 TTAGCGCCTACCCCAGTCC 61.062 63.158 2.29 0.00 0.00 3.85
3808 4342 8.558973 TCGTTCTTAGCTTATATACTACCCTC 57.441 38.462 0.00 0.00 0.00 4.30
3811 4345 9.743581 GTTCTTAGCTTATATACTACCCTCTCT 57.256 37.037 0.00 0.00 0.00 3.10
3815 4349 7.234661 AGCTTATATACTACCCTCTCTTTGC 57.765 40.000 0.00 0.00 0.00 3.68
3816 4350 6.782988 AGCTTATATACTACCCTCTCTTTGCA 59.217 38.462 0.00 0.00 0.00 4.08
3817 4351 7.039363 AGCTTATATACTACCCTCTCTTTGCAG 60.039 40.741 0.00 0.00 0.00 4.41
3818 4352 7.039644 GCTTATATACTACCCTCTCTTTGCAGA 60.040 40.741 0.00 0.00 0.00 4.26
3827 4361 2.180276 TCTCTTTGCAGAGGGAGTACC 58.820 52.381 1.92 0.00 46.17 3.34
3828 4362 1.902508 CTCTTTGCAGAGGGAGTACCA 59.097 52.381 0.00 0.00 42.84 3.25
3829 4363 1.623811 TCTTTGCAGAGGGAGTACCAC 59.376 52.381 4.15 0.00 43.89 4.16
3830 4364 1.625818 CTTTGCAGAGGGAGTACCACT 59.374 52.381 0.00 0.00 43.89 4.00
3831 4365 1.729586 TTGCAGAGGGAGTACCACTT 58.270 50.000 0.00 0.00 43.89 3.16
3832 4366 1.729586 TGCAGAGGGAGTACCACTTT 58.270 50.000 0.00 0.00 43.89 2.66
3833 4367 1.347707 TGCAGAGGGAGTACCACTTTG 59.652 52.381 0.00 0.00 43.89 2.77
3871 4405 6.130569 TCTTAGTTTGGTTTTGAAGGGCTTA 58.869 36.000 0.00 0.00 0.00 3.09
3878 4412 3.227614 GTTTTGAAGGGCTTAGTTCCCA 58.772 45.455 0.48 0.00 46.36 4.37
3879 4413 3.603965 TTTGAAGGGCTTAGTTCCCAA 57.396 42.857 0.48 0.00 46.36 4.12
3884 4418 3.542969 AGGGCTTAGTTCCCAAACAAT 57.457 42.857 0.48 0.00 46.36 2.71
3897 4431 8.919145 AGTTCCCAAACAATGTTTTATAGTTGA 58.081 29.630 8.85 0.00 37.88 3.18
3941 4475 6.810888 TTCGAGAAAAAGCACATTGAAAAG 57.189 33.333 0.00 0.00 0.00 2.27
3949 4483 8.552083 AAAAAGCACATTGAAAAGAGAGTTTT 57.448 26.923 0.00 0.00 0.00 2.43
3955 4489 7.043391 GCACATTGAAAAGAGAGTTTTGGTTAC 60.043 37.037 0.00 0.00 0.00 2.50
3969 4505 7.168905 AGTTTTGGTTACATTCCTCCTAAGAG 58.831 38.462 0.00 0.00 40.09 2.85
3991 4527 3.373877 GGTAGTCCCTCTGTTCCCATAGA 60.374 52.174 0.00 0.00 0.00 1.98
4006 4542 6.747414 TCCCATAGAACAGCTGTACATTAT 57.253 37.500 22.01 12.32 0.00 1.28
4007 4543 6.524734 TCCCATAGAACAGCTGTACATTATG 58.475 40.000 22.01 21.46 0.00 1.90
4008 4544 5.702670 CCCATAGAACAGCTGTACATTATGG 59.297 44.000 29.55 29.55 0.00 2.74
4009 4545 5.702670 CCATAGAACAGCTGTACATTATGGG 59.297 44.000 29.22 18.72 0.00 4.00
4010 4546 6.464322 CCATAGAACAGCTGTACATTATGGGA 60.464 42.308 29.22 10.32 0.00 4.37
4011 4547 4.770795 AGAACAGCTGTACATTATGGGAC 58.229 43.478 22.01 0.67 0.00 4.46
4012 4548 3.179443 ACAGCTGTACATTATGGGACG 57.821 47.619 20.16 0.00 0.00 4.79
4013 4549 2.158957 ACAGCTGTACATTATGGGACGG 60.159 50.000 20.16 0.86 0.00 4.79
4014 4550 1.416401 AGCTGTACATTATGGGACGGG 59.584 52.381 0.00 1.40 0.00 5.28
4015 4551 1.542547 GCTGTACATTATGGGACGGGG 60.543 57.143 0.00 0.00 0.00 5.73
4018 4554 2.967201 TGTACATTATGGGACGGGGTAG 59.033 50.000 0.00 0.00 0.00 3.18
4029 4565 1.208776 GACGGGGTAGGTTACAAGCAT 59.791 52.381 0.00 0.00 0.00 3.79
4052 4588 6.647334 TGGAACAAAGACTAATGCAAATCA 57.353 33.333 0.00 0.00 31.92 2.57
4074 4610 1.542030 AGGTCGTCAGTAGAACAGCTG 59.458 52.381 13.48 13.48 0.00 4.24
4267 4889 2.033141 GCTTCCAGGTGCTGCAGA 59.967 61.111 20.43 0.00 0.00 4.26
4268 4890 1.378250 GCTTCCAGGTGCTGCAGAT 60.378 57.895 20.43 0.00 0.00 2.90
4284 4910 2.361104 ATGGCATGGGTTCGCGTT 60.361 55.556 5.77 0.00 0.00 4.84
4288 4914 1.092921 GGCATGGGTTCGCGTTATGA 61.093 55.000 5.77 0.00 0.00 2.15
4303 4929 5.604815 CGTTATGAAAACGCCATTCAATC 57.395 39.130 0.00 0.00 39.98 2.67
4308 4934 5.041951 TGAAAACGCCATTCAATCTGTAC 57.958 39.130 0.00 0.00 34.04 2.90
4620 5442 5.352016 CGATTACAGGAAAATTACAACCCGA 59.648 40.000 0.00 0.00 0.00 5.14
4676 5498 4.019312 TGCCGCCATGCAGTCAGA 62.019 61.111 0.00 0.00 36.04 3.27
4688 5510 0.108662 CAGTCAGACGGCATGCACTA 60.109 55.000 21.36 0.00 0.00 2.74
4702 5524 4.778415 ACTACTGCCGTGCGCGAG 62.778 66.667 23.45 14.21 42.08 5.03
4722 5552 4.569943 GAGCCAAGTCACTTTACTCATCA 58.430 43.478 10.51 0.00 0.00 3.07
4782 5649 4.046938 TGCATCAGGATTCGTTCTCTAC 57.953 45.455 0.00 0.00 0.00 2.59
4783 5650 3.701542 TGCATCAGGATTCGTTCTCTACT 59.298 43.478 0.00 0.00 0.00 2.57
4793 5660 3.146847 TCGTTCTCTACTGAGCAAGTGA 58.853 45.455 2.51 0.00 40.26 3.41
4856 6150 4.029809 GTACAGGTGGCCCGGCTT 62.030 66.667 9.86 0.00 35.12 4.35
4951 6275 3.627952 TGGCTCGCCGGGTTGTAA 61.628 61.111 2.18 0.00 39.42 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 0.877649 ATGGTGATCACTCGCATCGC 60.878 55.000 24.50 6.66 33.36 4.58
19 20 1.135046 GATGGTGATCACTCGCATCG 58.865 55.000 24.50 0.00 33.36 3.84
20 21 2.133553 CTGATGGTGATCACTCGCATC 58.866 52.381 25.01 25.01 34.71 3.91
21 22 1.202615 CCTGATGGTGATCACTCGCAT 60.203 52.381 24.50 18.69 34.71 4.73
22 23 0.176449 CCTGATGGTGATCACTCGCA 59.824 55.000 24.50 14.86 34.71 5.10
23 24 1.156645 GCCTGATGGTGATCACTCGC 61.157 60.000 24.50 14.05 34.71 5.03
24 25 0.463204 AGCCTGATGGTGATCACTCG 59.537 55.000 24.50 11.44 34.71 4.18
25 26 1.209019 ACAGCCTGATGGTGATCACTC 59.791 52.381 24.50 15.77 45.48 3.51
26 27 1.209019 GACAGCCTGATGGTGATCACT 59.791 52.381 24.50 6.55 45.48 3.41
27 28 1.661341 GACAGCCTGATGGTGATCAC 58.339 55.000 17.91 17.91 45.48 3.06
28 29 0.543277 GGACAGCCTGATGGTGATCA 59.457 55.000 0.00 0.00 45.48 2.92
29 30 0.835941 AGGACAGCCTGATGGTGATC 59.164 55.000 0.00 0.00 44.90 2.92
30 31 3.018280 AGGACAGCCTGATGGTGAT 57.982 52.632 0.00 0.00 44.90 3.06
31 32 4.567195 AGGACAGCCTGATGGTGA 57.433 55.556 0.00 0.00 44.90 4.02
40 41 1.255667 TTCTACCGACCAGGACAGCC 61.256 60.000 0.00 0.00 45.00 4.85
41 42 0.173708 CTTCTACCGACCAGGACAGC 59.826 60.000 0.00 0.00 45.00 4.40
42 43 0.173708 GCTTCTACCGACCAGGACAG 59.826 60.000 0.00 0.00 45.00 3.51
43 44 0.251653 AGCTTCTACCGACCAGGACA 60.252 55.000 0.00 0.00 45.00 4.02
44 45 1.404748 GTAGCTTCTACCGACCAGGAC 59.595 57.143 0.00 0.00 45.00 3.85
45 46 1.760192 GTAGCTTCTACCGACCAGGA 58.240 55.000 0.00 0.00 45.00 3.86
47 48 1.331138 CTCGTAGCTTCTACCGACCAG 59.669 57.143 0.00 0.00 0.00 4.00
48 49 1.376543 CTCGTAGCTTCTACCGACCA 58.623 55.000 0.00 0.00 0.00 4.02
49 50 0.662085 CCTCGTAGCTTCTACCGACC 59.338 60.000 0.00 0.00 0.00 4.79
50 51 1.330213 GTCCTCGTAGCTTCTACCGAC 59.670 57.143 0.00 0.00 0.00 4.79
51 52 1.209019 AGTCCTCGTAGCTTCTACCGA 59.791 52.381 0.00 0.00 0.00 4.69
52 53 1.331138 CAGTCCTCGTAGCTTCTACCG 59.669 57.143 0.00 0.00 0.00 4.02
53 54 1.677052 CCAGTCCTCGTAGCTTCTACC 59.323 57.143 0.00 0.00 0.00 3.18
54 55 2.367486 ACCAGTCCTCGTAGCTTCTAC 58.633 52.381 0.00 0.00 0.00 2.59
55 56 2.803030 ACCAGTCCTCGTAGCTTCTA 57.197 50.000 0.00 0.00 0.00 2.10
56 57 1.819903 GAACCAGTCCTCGTAGCTTCT 59.180 52.381 0.00 0.00 0.00 2.85
57 58 1.467713 CGAACCAGTCCTCGTAGCTTC 60.468 57.143 0.00 0.00 0.00 3.86
58 59 0.526662 CGAACCAGTCCTCGTAGCTT 59.473 55.000 0.00 0.00 0.00 3.74
59 60 1.313812 CCGAACCAGTCCTCGTAGCT 61.314 60.000 0.00 0.00 33.17 3.32
60 61 1.139095 CCGAACCAGTCCTCGTAGC 59.861 63.158 0.00 0.00 33.17 3.58
61 62 1.139095 GCCGAACCAGTCCTCGTAG 59.861 63.158 0.00 0.00 33.17 3.51
62 63 1.592400 CTGCCGAACCAGTCCTCGTA 61.592 60.000 0.00 0.00 33.17 3.43
63 64 2.915659 TGCCGAACCAGTCCTCGT 60.916 61.111 0.00 0.00 33.17 4.18
64 65 2.125912 CTGCCGAACCAGTCCTCG 60.126 66.667 0.00 0.00 34.83 4.63
65 66 2.266055 CCTGCCGAACCAGTCCTC 59.734 66.667 0.00 0.00 0.00 3.71
66 67 3.322466 CCCTGCCGAACCAGTCCT 61.322 66.667 0.00 0.00 0.00 3.85
67 68 3.316573 CTCCCTGCCGAACCAGTCC 62.317 68.421 0.00 0.00 0.00 3.85
68 69 1.827399 TTCTCCCTGCCGAACCAGTC 61.827 60.000 0.00 0.00 0.00 3.51
69 70 1.415672 TTTCTCCCTGCCGAACCAGT 61.416 55.000 0.00 0.00 0.00 4.00
70 71 0.250727 TTTTCTCCCTGCCGAACCAG 60.251 55.000 0.00 0.00 0.00 4.00
71 72 0.183971 TTTTTCTCCCTGCCGAACCA 59.816 50.000 0.00 0.00 0.00 3.67
72 73 1.545841 ATTTTTCTCCCTGCCGAACC 58.454 50.000 0.00 0.00 0.00 3.62
73 74 2.683362 CCTATTTTTCTCCCTGCCGAAC 59.317 50.000 0.00 0.00 0.00 3.95
74 75 2.944094 GCCTATTTTTCTCCCTGCCGAA 60.944 50.000 0.00 0.00 0.00 4.30
75 76 1.408266 GCCTATTTTTCTCCCTGCCGA 60.408 52.381 0.00 0.00 0.00 5.54
76 77 1.025041 GCCTATTTTTCTCCCTGCCG 58.975 55.000 0.00 0.00 0.00 5.69
77 78 2.143876 TGCCTATTTTTCTCCCTGCC 57.856 50.000 0.00 0.00 0.00 4.85
78 79 5.852282 TTATTGCCTATTTTTCTCCCTGC 57.148 39.130 0.00 0.00 0.00 4.85
100 101 3.075884 GCATGCCACATCAATGGTTTTT 58.924 40.909 6.36 0.00 42.28 1.94
101 102 2.616001 GGCATGCCACATCAATGGTTTT 60.616 45.455 32.08 0.00 42.28 2.43
102 103 1.065998 GGCATGCCACATCAATGGTTT 60.066 47.619 32.08 0.00 42.28 3.27
103 104 0.538118 GGCATGCCACATCAATGGTT 59.462 50.000 32.08 0.00 42.28 3.67
104 105 0.615261 TGGCATGCCACATCAATGGT 60.615 50.000 35.59 0.00 41.89 3.55
105 106 0.104120 CTGGCATGCCACATCAATGG 59.896 55.000 35.59 19.05 41.89 3.16
106 107 0.529773 GCTGGCATGCCACATCAATG 60.530 55.000 35.59 23.66 41.89 2.82
107 108 0.686441 AGCTGGCATGCCACATCAAT 60.686 50.000 35.59 14.26 41.89 2.57
108 109 1.304630 AGCTGGCATGCCACATCAA 60.305 52.632 35.59 13.90 41.89 2.57
109 110 2.049767 CAGCTGGCATGCCACATCA 61.050 57.895 35.59 14.70 41.89 3.07
110 111 2.782222 CCAGCTGGCATGCCACATC 61.782 63.158 35.59 24.75 41.89 3.06
111 112 2.758327 CCAGCTGGCATGCCACAT 60.758 61.111 35.59 23.07 41.89 3.21
112 113 3.969119 TCCAGCTGGCATGCCACA 61.969 61.111 35.59 16.34 41.89 4.17
113 114 3.446570 GTCCAGCTGGCATGCCAC 61.447 66.667 35.59 28.55 41.89 5.01
114 115 4.746309 GGTCCAGCTGGCATGCCA 62.746 66.667 36.26 36.26 45.02 4.92
115 116 4.746309 TGGTCCAGCTGGCATGCC 62.746 66.667 30.54 30.54 34.44 4.40
116 117 3.138798 CTGGTCCAGCTGGCATGC 61.139 66.667 28.91 16.52 34.44 4.06
117 118 1.748122 GTCTGGTCCAGCTGGCATG 60.748 63.158 28.91 16.77 34.44 4.06
118 119 1.782201 TTGTCTGGTCCAGCTGGCAT 61.782 55.000 28.91 0.00 34.44 4.40
119 120 1.782201 ATTGTCTGGTCCAGCTGGCA 61.782 55.000 28.91 19.56 34.44 4.92
120 121 0.610232 AATTGTCTGGTCCAGCTGGC 60.610 55.000 28.91 21.69 34.44 4.85
121 122 1.171308 CAATTGTCTGGTCCAGCTGG 58.829 55.000 27.87 27.87 0.00 4.85
122 123 2.189594 TCAATTGTCTGGTCCAGCTG 57.810 50.000 14.64 6.78 0.00 4.24
123 124 2.887152 GTTTCAATTGTCTGGTCCAGCT 59.113 45.455 14.64 0.00 0.00 4.24
124 125 2.887152 AGTTTCAATTGTCTGGTCCAGC 59.113 45.455 14.64 9.91 0.00 4.85
125 126 4.339247 ACAAGTTTCAATTGTCTGGTCCAG 59.661 41.667 13.21 13.21 36.10 3.86
126 127 4.277476 ACAAGTTTCAATTGTCTGGTCCA 58.723 39.130 5.13 0.00 36.10 4.02
127 128 4.918810 ACAAGTTTCAATTGTCTGGTCC 57.081 40.909 5.13 0.00 36.10 4.46
134 135 4.196193 TCTGACCGACAAGTTTCAATTGT 58.804 39.130 5.13 0.00 43.38 2.71
135 136 4.811555 TCTGACCGACAAGTTTCAATTG 57.188 40.909 0.00 0.00 0.00 2.32
136 137 4.638421 TGTTCTGACCGACAAGTTTCAATT 59.362 37.500 0.00 0.00 0.00 2.32
137 138 4.035208 GTGTTCTGACCGACAAGTTTCAAT 59.965 41.667 0.00 0.00 0.00 2.57
138 139 3.372822 GTGTTCTGACCGACAAGTTTCAA 59.627 43.478 0.00 0.00 0.00 2.69
139 140 2.933906 GTGTTCTGACCGACAAGTTTCA 59.066 45.455 0.00 0.00 0.00 2.69
140 141 2.933906 TGTGTTCTGACCGACAAGTTTC 59.066 45.455 0.00 0.00 0.00 2.78
141 142 2.980568 TGTGTTCTGACCGACAAGTTT 58.019 42.857 0.00 0.00 0.00 2.66
142 143 2.684001 TGTGTTCTGACCGACAAGTT 57.316 45.000 0.00 0.00 0.00 2.66
143 144 2.684001 TTGTGTTCTGACCGACAAGT 57.316 45.000 0.00 0.00 0.00 3.16
144 145 4.273480 AGATTTTGTGTTCTGACCGACAAG 59.727 41.667 0.00 0.00 30.37 3.16
145 146 4.196193 AGATTTTGTGTTCTGACCGACAA 58.804 39.130 0.00 0.00 0.00 3.18
146 147 3.804036 AGATTTTGTGTTCTGACCGACA 58.196 40.909 0.00 0.00 0.00 4.35
147 148 3.120991 CGAGATTTTGTGTTCTGACCGAC 60.121 47.826 0.00 0.00 0.00 4.79
148 149 3.057019 CGAGATTTTGTGTTCTGACCGA 58.943 45.455 0.00 0.00 0.00 4.69
149 150 2.411547 GCGAGATTTTGTGTTCTGACCG 60.412 50.000 0.00 0.00 0.00 4.79
150 151 2.808543 AGCGAGATTTTGTGTTCTGACC 59.191 45.455 0.00 0.00 0.00 4.02
151 152 5.591643 TTAGCGAGATTTTGTGTTCTGAC 57.408 39.130 0.00 0.00 0.00 3.51
152 153 5.525745 TGTTTAGCGAGATTTTGTGTTCTGA 59.474 36.000 0.00 0.00 0.00 3.27
153 154 5.747565 TGTTTAGCGAGATTTTGTGTTCTG 58.252 37.500 0.00 0.00 0.00 3.02
154 155 5.049405 CCTGTTTAGCGAGATTTTGTGTTCT 60.049 40.000 0.00 0.00 0.00 3.01
155 156 5.147162 CCTGTTTAGCGAGATTTTGTGTTC 58.853 41.667 0.00 0.00 0.00 3.18
156 157 4.023193 CCCTGTTTAGCGAGATTTTGTGTT 60.023 41.667 0.00 0.00 0.00 3.32
157 158 3.502211 CCCTGTTTAGCGAGATTTTGTGT 59.498 43.478 0.00 0.00 0.00 3.72
158 159 3.502211 ACCCTGTTTAGCGAGATTTTGTG 59.498 43.478 0.00 0.00 0.00 3.33
159 160 3.751518 ACCCTGTTTAGCGAGATTTTGT 58.248 40.909 0.00 0.00 0.00 2.83
160 161 5.873179 TTACCCTGTTTAGCGAGATTTTG 57.127 39.130 0.00 0.00 0.00 2.44
161 162 7.393515 AGAATTTACCCTGTTTAGCGAGATTTT 59.606 33.333 0.00 0.00 0.00 1.82
162 163 6.884836 AGAATTTACCCTGTTTAGCGAGATTT 59.115 34.615 0.00 0.00 0.00 2.17
163 164 6.316390 CAGAATTTACCCTGTTTAGCGAGATT 59.684 38.462 0.00 0.00 0.00 2.40
164 165 5.817816 CAGAATTTACCCTGTTTAGCGAGAT 59.182 40.000 0.00 0.00 0.00 2.75
165 166 5.175859 CAGAATTTACCCTGTTTAGCGAGA 58.824 41.667 0.00 0.00 0.00 4.04
166 167 4.332819 CCAGAATTTACCCTGTTTAGCGAG 59.667 45.833 0.00 0.00 0.00 5.03
167 168 4.258543 CCAGAATTTACCCTGTTTAGCGA 58.741 43.478 0.00 0.00 0.00 4.93
168 169 3.181500 GCCAGAATTTACCCTGTTTAGCG 60.181 47.826 0.00 0.00 0.00 4.26
169 170 3.761752 TGCCAGAATTTACCCTGTTTAGC 59.238 43.478 0.00 0.00 0.00 3.09
170 171 5.253330 TCTGCCAGAATTTACCCTGTTTAG 58.747 41.667 0.00 0.00 0.00 1.85
171 172 5.249780 TCTGCCAGAATTTACCCTGTTTA 57.750 39.130 0.00 0.00 0.00 2.01
172 173 4.112634 TCTGCCAGAATTTACCCTGTTT 57.887 40.909 0.00 0.00 0.00 2.83
173 174 3.806949 TCTGCCAGAATTTACCCTGTT 57.193 42.857 0.00 0.00 0.00 3.16
174 175 3.074538 AGTTCTGCCAGAATTTACCCTGT 59.925 43.478 10.87 0.00 36.50 4.00
175 176 3.690460 AGTTCTGCCAGAATTTACCCTG 58.310 45.455 10.87 0.00 36.50 4.45
176 177 4.388577 AAGTTCTGCCAGAATTTACCCT 57.611 40.909 12.88 0.67 36.50 4.34
177 178 5.230182 CAAAAGTTCTGCCAGAATTTACCC 58.770 41.667 14.58 0.00 33.77 3.69
178 179 4.686091 GCAAAAGTTCTGCCAGAATTTACC 59.314 41.667 14.58 0.17 33.77 2.85
179 180 5.532557 AGCAAAAGTTCTGCCAGAATTTAC 58.467 37.500 14.58 5.80 40.86 2.01
180 181 5.789643 AGCAAAAGTTCTGCCAGAATTTA 57.210 34.783 14.58 0.00 40.86 1.40
181 182 4.677673 AGCAAAAGTTCTGCCAGAATTT 57.322 36.364 10.87 9.94 40.86 1.82
182 183 5.789643 TTAGCAAAAGTTCTGCCAGAATT 57.210 34.783 10.87 3.15 40.86 2.17
183 184 5.789643 TTTAGCAAAAGTTCTGCCAGAAT 57.210 34.783 10.87 0.00 40.86 2.40
184 185 5.509501 CCATTTAGCAAAAGTTCTGCCAGAA 60.510 40.000 2.24 2.24 40.86 3.02
185 186 4.022068 CCATTTAGCAAAAGTTCTGCCAGA 60.022 41.667 0.00 0.00 40.86 3.86
186 187 4.240096 CCATTTAGCAAAAGTTCTGCCAG 58.760 43.478 0.00 0.00 40.86 4.85
187 188 3.006752 CCCATTTAGCAAAAGTTCTGCCA 59.993 43.478 0.00 0.00 40.86 4.92
188 189 3.588955 CCCATTTAGCAAAAGTTCTGCC 58.411 45.455 0.00 0.00 40.86 4.85
189 190 3.006859 ACCCCATTTAGCAAAAGTTCTGC 59.993 43.478 0.00 0.00 40.24 4.26
190 191 4.871933 ACCCCATTTAGCAAAAGTTCTG 57.128 40.909 0.00 0.00 0.00 3.02
191 192 6.987403 TTTACCCCATTTAGCAAAAGTTCT 57.013 33.333 0.00 0.00 0.00 3.01
192 193 6.144886 CGTTTTACCCCATTTAGCAAAAGTTC 59.855 38.462 0.00 0.00 0.00 3.01
193 194 5.986741 CGTTTTACCCCATTTAGCAAAAGTT 59.013 36.000 0.00 0.00 0.00 2.66
194 195 5.510009 CCGTTTTACCCCATTTAGCAAAAGT 60.510 40.000 0.00 0.00 0.00 2.66
195 196 4.926832 CCGTTTTACCCCATTTAGCAAAAG 59.073 41.667 0.00 0.00 0.00 2.27
196 197 4.587684 TCCGTTTTACCCCATTTAGCAAAA 59.412 37.500 0.00 0.00 0.00 2.44
197 198 4.022155 GTCCGTTTTACCCCATTTAGCAAA 60.022 41.667 0.00 0.00 0.00 3.68
198 199 3.506844 GTCCGTTTTACCCCATTTAGCAA 59.493 43.478 0.00 0.00 0.00 3.91
199 200 3.083293 GTCCGTTTTACCCCATTTAGCA 58.917 45.455 0.00 0.00 0.00 3.49
200 201 3.083293 TGTCCGTTTTACCCCATTTAGC 58.917 45.455 0.00 0.00 0.00 3.09
201 202 5.708877 TTTGTCCGTTTTACCCCATTTAG 57.291 39.130 0.00 0.00 0.00 1.85
202 203 6.494146 AGATTTTGTCCGTTTTACCCCATTTA 59.506 34.615 0.00 0.00 0.00 1.40
203 204 5.305902 AGATTTTGTCCGTTTTACCCCATTT 59.694 36.000 0.00 0.00 0.00 2.32
204 205 4.836175 AGATTTTGTCCGTTTTACCCCATT 59.164 37.500 0.00 0.00 0.00 3.16
205 206 4.412843 AGATTTTGTCCGTTTTACCCCAT 58.587 39.130 0.00 0.00 0.00 4.00
206 207 3.822167 GAGATTTTGTCCGTTTTACCCCA 59.178 43.478 0.00 0.00 0.00 4.96
207 208 3.120095 CGAGATTTTGTCCGTTTTACCCC 60.120 47.826 0.00 0.00 0.00 4.95
208 209 3.668757 GCGAGATTTTGTCCGTTTTACCC 60.669 47.826 0.00 0.00 0.00 3.69
209 210 3.187842 AGCGAGATTTTGTCCGTTTTACC 59.812 43.478 0.00 0.00 0.00 2.85
210 211 4.400036 AGCGAGATTTTGTCCGTTTTAC 57.600 40.909 0.00 0.00 0.00 2.01
211 212 6.542574 TTTAGCGAGATTTTGTCCGTTTTA 57.457 33.333 0.00 0.00 0.00 1.52
212 213 5.427036 TTTAGCGAGATTTTGTCCGTTTT 57.573 34.783 0.00 0.00 0.00 2.43
213 214 5.622770 ATTTAGCGAGATTTTGTCCGTTT 57.377 34.783 0.00 0.00 0.00 3.60
214 215 5.293569 CCTATTTAGCGAGATTTTGTCCGTT 59.706 40.000 0.00 0.00 0.00 4.44
215 216 4.809426 CCTATTTAGCGAGATTTTGTCCGT 59.191 41.667 0.00 0.00 0.00 4.69
216 217 4.211374 CCCTATTTAGCGAGATTTTGTCCG 59.789 45.833 0.00 0.00 0.00 4.79
217 218 5.123936 ACCCTATTTAGCGAGATTTTGTCC 58.876 41.667 0.00 0.00 0.00 4.02
218 219 7.781548 TTACCCTATTTAGCGAGATTTTGTC 57.218 36.000 0.00 0.00 0.00 3.18
219 220 8.747538 AATTACCCTATTTAGCGAGATTTTGT 57.252 30.769 0.00 0.00 0.00 2.83
222 223 9.490379 CACTAATTACCCTATTTAGCGAGATTT 57.510 33.333 0.00 0.00 0.00 2.17
223 224 8.648693 ACACTAATTACCCTATTTAGCGAGATT 58.351 33.333 0.00 0.00 0.00 2.40
224 225 8.191534 ACACTAATTACCCTATTTAGCGAGAT 57.808 34.615 0.00 0.00 0.00 2.75
225 226 7.592885 ACACTAATTACCCTATTTAGCGAGA 57.407 36.000 0.00 0.00 0.00 4.04
226 227 9.754382 TTAACACTAATTACCCTATTTAGCGAG 57.246 33.333 0.00 0.00 0.00 5.03
236 237 9.802039 TCTGACATTTTTAACACTAATTACCCT 57.198 29.630 0.00 0.00 0.00 4.34
244 245 9.667107 CCCTCTATTCTGACATTTTTAACACTA 57.333 33.333 0.00 0.00 0.00 2.74
245 246 8.164070 ACCCTCTATTCTGACATTTTTAACACT 58.836 33.333 0.00 0.00 0.00 3.55
246 247 8.336801 ACCCTCTATTCTGACATTTTTAACAC 57.663 34.615 0.00 0.00 0.00 3.32
252 253 8.803235 GGTTTTTACCCTCTATTCTGACATTTT 58.197 33.333 0.00 0.00 0.00 1.82
253 254 7.947890 TGGTTTTTACCCTCTATTCTGACATTT 59.052 33.333 0.00 0.00 0.00 2.32
254 255 7.466804 TGGTTTTTACCCTCTATTCTGACATT 58.533 34.615 0.00 0.00 0.00 2.71
255 256 7.027874 TGGTTTTTACCCTCTATTCTGACAT 57.972 36.000 0.00 0.00 0.00 3.06
256 257 6.271391 TCTGGTTTTTACCCTCTATTCTGACA 59.729 38.462 0.00 0.00 0.00 3.58
257 258 6.708285 TCTGGTTTTTACCCTCTATTCTGAC 58.292 40.000 0.00 0.00 0.00 3.51
258 259 6.945636 TCTGGTTTTTACCCTCTATTCTGA 57.054 37.500 0.00 0.00 0.00 3.27
259 260 8.581253 AATTCTGGTTTTTACCCTCTATTCTG 57.419 34.615 0.00 0.00 0.00 3.02
263 264 9.682465 GAGTAAATTCTGGTTTTTACCCTCTAT 57.318 33.333 0.00 0.00 38.49 1.98
264 265 8.887393 AGAGTAAATTCTGGTTTTTACCCTCTA 58.113 33.333 0.00 0.00 38.49 2.43
265 266 7.756614 AGAGTAAATTCTGGTTTTTACCCTCT 58.243 34.615 0.00 0.00 38.49 3.69
266 267 7.997773 AGAGTAAATTCTGGTTTTTACCCTC 57.002 36.000 0.00 0.00 38.49 4.30
295 296 9.452287 AGAGTAAACCTTGTAAACTGTTGTTAA 57.548 29.630 0.00 0.00 34.96 2.01
296 297 9.452287 AAGAGTAAACCTTGTAAACTGTTGTTA 57.548 29.630 0.00 0.00 34.96 2.41
297 298 7.933215 AGAGTAAACCTTGTAAACTGTTGTT 57.067 32.000 0.00 0.00 38.16 2.83
298 299 7.933215 AAGAGTAAACCTTGTAAACTGTTGT 57.067 32.000 0.00 0.00 0.00 3.32
389 396 0.533308 TTGCGGTTGGTAAGCTCGTT 60.533 50.000 0.00 0.00 0.00 3.85
405 412 1.569479 GACGAGCCACCTGACTTTGC 61.569 60.000 0.00 0.00 0.00 3.68
562 569 0.899019 TACTGGTCATACAGCCGCAA 59.101 50.000 0.00 0.00 42.21 4.85
676 698 2.905075 CTGATGCAATTACCACGGAGA 58.095 47.619 0.00 0.00 0.00 3.71
703 725 3.302415 CGCGCAATGTAAATTCATCTCGA 60.302 43.478 8.75 0.00 0.00 4.04
803 825 5.718607 AGTAGGGGATACAGAGTTAAACGTT 59.281 40.000 0.00 0.00 36.79 3.99
886 908 7.064966 CGGATTTATTTAGTTTGTACCGGACTT 59.935 37.037 9.46 0.00 34.27 3.01
891 913 6.480285 CACCGGATTTATTTAGTTTGTACCG 58.520 40.000 9.46 0.00 37.02 4.02
922 962 1.066430 AGATGAACAATGTACGGGCGT 60.066 47.619 0.00 0.00 0.00 5.68
923 963 1.327460 CAGATGAACAATGTACGGGCG 59.673 52.381 0.00 0.00 0.00 6.13
981 1029 3.283467 AAACCGGGGAGGAGGGGAT 62.283 63.158 6.32 0.00 45.00 3.85
992 1040 1.279271 AGAGACAGGATTGAAACCGGG 59.721 52.381 6.32 0.00 0.00 5.73
1080 1203 1.676014 GGGGTGAATTGTGGAGACGAG 60.676 57.143 0.00 0.00 0.00 4.18
1083 1206 3.266240 GGGGGTGAATTGTGGAGAC 57.734 57.895 0.00 0.00 0.00 3.36
1248 1373 2.801111 GAGACGAACAAAGGAACTGTCC 59.199 50.000 0.00 0.00 45.35 4.02
1250 1375 3.536956 TGAGACGAACAAAGGAACTGT 57.463 42.857 0.00 0.00 40.86 3.55
1275 1400 4.441087 CGAATCGAATTATGAACTGAGCGA 59.559 41.667 0.00 0.00 0.00 4.93
1316 1441 3.062763 CGCTGAAGCAGAAGAAGAAGAA 58.937 45.455 2.79 0.00 42.21 2.52
1317 1442 2.681706 CGCTGAAGCAGAAGAAGAAGA 58.318 47.619 2.79 0.00 42.21 2.87
1318 1443 1.128321 GCGCTGAAGCAGAAGAAGAAG 59.872 52.381 0.00 0.00 42.21 2.85
1319 1444 1.151668 GCGCTGAAGCAGAAGAAGAA 58.848 50.000 0.00 0.00 42.21 2.52
1320 1445 0.033920 TGCGCTGAAGCAGAAGAAGA 59.966 50.000 9.73 0.00 42.92 2.87
1321 1446 2.536725 TGCGCTGAAGCAGAAGAAG 58.463 52.632 9.73 0.00 42.92 2.85
1322 1447 4.777384 TGCGCTGAAGCAGAAGAA 57.223 50.000 9.73 0.00 42.92 2.52
1395 1520 0.542805 GTTGTCCATTACGCCCCCTA 59.457 55.000 0.00 0.00 0.00 3.53
1402 1527 3.425625 CGAATTGGGTGTTGTCCATTACG 60.426 47.826 0.00 0.00 33.82 3.18
1404 1529 2.490115 GCGAATTGGGTGTTGTCCATTA 59.510 45.455 0.00 0.00 33.82 1.90
1405 1530 1.272212 GCGAATTGGGTGTTGTCCATT 59.728 47.619 0.00 0.00 33.82 3.16
1447 1572 4.787882 GAATTAGATTCCTTTGCGCAGCTC 60.788 45.833 11.31 2.60 43.72 4.09
1450 1575 4.095483 ACAGAATTAGATTCCTTTGCGCAG 59.905 41.667 11.31 0.00 40.13 5.18
1470 1595 5.116180 TCACACACAGAAGGTTAGAAACAG 58.884 41.667 0.00 0.00 0.00 3.16
1478 1603 4.345257 ACACTCTATCACACACAGAAGGTT 59.655 41.667 0.00 0.00 0.00 3.50
1483 1608 3.767711 AGGACACTCTATCACACACAGA 58.232 45.455 0.00 0.00 0.00 3.41
1500 1625 2.861147 AAACAGAGGCAGGTAAGGAC 57.139 50.000 0.00 0.00 0.00 3.85
1510 1635 2.030451 CCAGAAGCAGAAAAACAGAGGC 60.030 50.000 0.00 0.00 0.00 4.70
1514 1639 2.951642 TCCACCAGAAGCAGAAAAACAG 59.048 45.455 0.00 0.00 0.00 3.16
1515 1640 2.951642 CTCCACCAGAAGCAGAAAAACA 59.048 45.455 0.00 0.00 0.00 2.83
1516 1641 2.287849 GCTCCACCAGAAGCAGAAAAAC 60.288 50.000 0.00 0.00 0.00 2.43
1522 1647 4.298009 CTGCTCCACCAGAAGCAG 57.702 61.111 9.68 9.68 46.69 4.24
1610 1739 0.034380 CTGTAGGAGGGTGACGAGGA 60.034 60.000 0.00 0.00 0.00 3.71
1611 1740 1.668101 GCTGTAGGAGGGTGACGAGG 61.668 65.000 0.00 0.00 0.00 4.63
1620 1749 0.461961 GGTAGCTGTGCTGTAGGAGG 59.538 60.000 0.00 0.00 40.10 4.30
1626 1755 0.174389 CATCGAGGTAGCTGTGCTGT 59.826 55.000 0.00 0.00 40.10 4.40
1632 1761 0.316278 CGTCGTCATCGAGGTAGCTG 60.316 60.000 0.00 0.00 46.96 4.24
1633 1762 0.461516 TCGTCGTCATCGAGGTAGCT 60.462 55.000 0.00 0.00 46.96 3.32
1635 1764 1.069838 CCATCGTCGTCATCGAGGTAG 60.070 57.143 0.00 0.00 46.96 3.18
1640 1769 0.098200 GTGTCCATCGTCGTCATCGA 59.902 55.000 0.00 0.00 44.12 3.59
1669 1804 0.655733 CCGCGACTTGTTTCAGTTGT 59.344 50.000 8.23 0.00 31.43 3.32
1671 1806 1.164041 CCCCGCGACTTGTTTCAGTT 61.164 55.000 8.23 0.00 0.00 3.16
1674 1809 2.975799 GCCCCGCGACTTGTTTCA 60.976 61.111 8.23 0.00 0.00 2.69
1685 1820 4.189580 TATTCCCAGCTGCCCCGC 62.190 66.667 8.66 0.00 0.00 6.13
1734 1869 1.003839 ACGATGCAAAAGGAGGCGA 60.004 52.632 0.00 0.00 0.00 5.54
1788 1923 0.882042 GCGGACGGAGATGAATGCAT 60.882 55.000 0.00 0.00 37.47 3.96
1799 1934 2.338620 CACAGTGAAGCGGACGGA 59.661 61.111 0.00 0.00 0.00 4.69
1801 1936 2.356313 AGCACAGTGAAGCGGACG 60.356 61.111 4.15 0.00 35.48 4.79
1802 1937 1.300931 TCAGCACAGTGAAGCGGAC 60.301 57.895 4.15 0.00 35.48 4.79
1803 1938 1.300931 GTCAGCACAGTGAAGCGGA 60.301 57.895 4.15 4.05 35.48 5.54
1804 1939 0.952497 ATGTCAGCACAGTGAAGCGG 60.952 55.000 4.15 1.42 35.41 5.52
1805 1940 0.165295 CATGTCAGCACAGTGAAGCG 59.835 55.000 4.15 0.00 35.41 4.68
1806 1941 0.109873 GCATGTCAGCACAGTGAAGC 60.110 55.000 4.15 0.00 35.41 3.86
1807 1942 1.520494 AGCATGTCAGCACAGTGAAG 58.480 50.000 4.15 0.00 35.41 3.02
1808 1943 2.837532 TAGCATGTCAGCACAGTGAA 57.162 45.000 4.15 0.00 35.41 3.18
1809 1944 2.837532 TTAGCATGTCAGCACAGTGA 57.162 45.000 4.15 0.00 35.41 3.41
1810 1945 2.810274 ACTTTAGCATGTCAGCACAGTG 59.190 45.455 0.00 0.00 35.41 3.66
1811 1946 3.070018 GACTTTAGCATGTCAGCACAGT 58.930 45.455 0.00 0.00 35.41 3.55
1838 1973 2.775032 TAGCAAACGGAGTGGTCGCC 62.775 60.000 0.00 0.00 45.00 5.54
1851 1986 7.885297 ACACAGAAGCAGATAAAATTAGCAAA 58.115 30.769 0.00 0.00 0.00 3.68
1871 2007 0.792640 CAAACCTAGCAGCGACACAG 59.207 55.000 0.00 0.00 0.00 3.66
1913 2049 1.281867 AGAACCAAATGCCGATCCTCA 59.718 47.619 0.00 0.00 0.00 3.86
1966 2102 5.333566 AAGGTTTCAATAAGGGAGGTTGA 57.666 39.130 0.00 0.00 0.00 3.18
1968 2104 5.965486 AGAAAGGTTTCAATAAGGGAGGTT 58.035 37.500 5.30 0.00 39.61 3.50
1970 2106 5.775195 ACAAGAAAGGTTTCAATAAGGGAGG 59.225 40.000 5.30 0.00 39.61 4.30
1978 2126 4.218312 AGCCAGACAAGAAAGGTTTCAAT 58.782 39.130 5.30 0.00 39.61 2.57
2040 2188 3.213506 TGCTTGAAACACACTAGCACAT 58.786 40.909 0.00 0.00 39.98 3.21
2041 2189 2.613595 CTGCTTGAAACACACTAGCACA 59.386 45.455 0.00 0.00 39.98 4.57
2044 2192 1.537202 CCCTGCTTGAAACACACTAGC 59.463 52.381 0.00 0.00 36.85 3.42
2125 2273 1.350071 TTTAGCCAACCACCGACCTA 58.650 50.000 0.00 0.00 0.00 3.08
2126 2274 0.696501 ATTTAGCCAACCACCGACCT 59.303 50.000 0.00 0.00 0.00 3.85
2127 2275 1.471287 GAATTTAGCCAACCACCGACC 59.529 52.381 0.00 0.00 0.00 4.79
2128 2276 2.156098 TGAATTTAGCCAACCACCGAC 58.844 47.619 0.00 0.00 0.00 4.79
2163 2312 7.148590 GCATAACTAAATTCAAAACAGGGCAAG 60.149 37.037 0.00 0.00 0.00 4.01
2189 2338 2.368875 ACGGGAGGGCTGAAACATATAG 59.631 50.000 0.00 0.00 0.00 1.31
2245 2395 0.107459 GAGGCTGAAGGACCATCACC 60.107 60.000 0.00 3.15 0.00 4.02
2268 2418 3.451526 TGTCTCATTTCTCGCTAGCATG 58.548 45.455 16.45 10.44 0.00 4.06
2295 2445 9.027129 CAAATAAACGCATCAAGAATGATTCAT 57.973 29.630 8.03 0.00 43.89 2.57
2296 2446 7.009448 GCAAATAAACGCATCAAGAATGATTCA 59.991 33.333 8.03 0.00 43.89 2.57
2297 2447 7.221452 AGCAAATAAACGCATCAAGAATGATTC 59.779 33.333 0.00 0.00 43.89 2.52
2298 2448 7.009815 CAGCAAATAAACGCATCAAGAATGATT 59.990 33.333 0.00 0.00 43.89 2.57
2308 2458 6.201517 ACATGATACAGCAAATAAACGCATC 58.798 36.000 0.00 0.00 0.00 3.91
2312 2462 7.905126 TCACTACATGATACAGCAAATAAACG 58.095 34.615 0.00 0.00 29.99 3.60
2323 2473 8.006197 GCATCTGCCTAATCACTACATGATACA 61.006 40.741 0.00 0.00 40.27 2.29
2324 2474 6.312426 GCATCTGCCTAATCACTACATGATAC 59.688 42.308 0.00 0.00 40.27 2.24
2334 2484 4.418392 CAAACAAGCATCTGCCTAATCAC 58.582 43.478 0.00 0.00 43.38 3.06
2338 2488 3.153369 TCCAAACAAGCATCTGCCTAA 57.847 42.857 0.00 0.00 43.38 2.69
2339 2489 2.819608 GTTCCAAACAAGCATCTGCCTA 59.180 45.455 0.00 0.00 43.38 3.93
2357 2507 5.760743 AGAAGTAGCCTCAAACTCTTTGTTC 59.239 40.000 0.00 0.00 41.36 3.18
2364 2514 5.140747 TCTCAAGAAGTAGCCTCAAACTC 57.859 43.478 0.00 0.00 0.00 3.01
2381 2531 5.313712 AGTAAATCCCGCTTTTCTTCTCAA 58.686 37.500 0.00 0.00 0.00 3.02
2453 2603 8.362639 AGTTTCTGAAGGTAACACTACGAATAA 58.637 33.333 0.00 0.00 41.41 1.40
2504 2654 9.950496 AGATCATATTCATACATGTAGGGAAAC 57.050 33.333 20.27 8.80 0.00 2.78
2545 2695 6.575162 AGCATAAACTTGTAAAACAGAGGG 57.425 37.500 0.00 0.00 0.00 4.30
2599 2750 0.108186 TGCATTGCTCAGTCCTACCG 60.108 55.000 10.49 0.00 0.00 4.02
2633 2784 4.925646 GCAAGAGCTGAAAAATAAACTGGG 59.074 41.667 0.00 0.00 37.91 4.45
2819 3008 8.680903 GGCTCATAAATTTTCTGAAGATCTGAA 58.319 33.333 0.00 0.00 33.44 3.02
2820 3009 7.830697 TGGCTCATAAATTTTCTGAAGATCTGA 59.169 33.333 0.00 0.00 0.00 3.27
2836 3148 6.009589 TCTTGGACATTTTCTGGCTCATAAA 58.990 36.000 0.00 0.00 31.35 1.40
2838 3150 4.943705 GTCTTGGACATTTTCTGGCTCATA 59.056 41.667 0.00 0.00 31.35 2.15
3130 3442 4.199002 ACCAGTTCCTTCCCTTTGATTT 57.801 40.909 0.00 0.00 0.00 2.17
3187 3502 2.033424 GGTGAGCTTGAGTTGTGTTTCC 59.967 50.000 0.00 0.00 0.00 3.13
3188 3503 2.945668 AGGTGAGCTTGAGTTGTGTTTC 59.054 45.455 0.00 0.00 0.00 2.78
3223 3538 1.519455 CGAGCAGATGGGTTCCGAC 60.519 63.158 0.00 0.00 0.00 4.79
3237 3552 1.516603 GTGTAGGACGGCTTCGAGC 60.517 63.158 0.00 0.00 41.46 5.03
3278 3593 2.478134 CGCTCCAGTCTGTTCTTTCTTG 59.522 50.000 0.00 0.00 0.00 3.02
3359 3674 0.885879 CTTACTTGGGTTTTCGGGCC 59.114 55.000 0.00 0.00 0.00 5.80
3362 3677 3.188667 GCTCTTCTTACTTGGGTTTTCGG 59.811 47.826 0.00 0.00 0.00 4.30
3488 3809 3.057969 TCACAAGTGCCACTCCATAAG 57.942 47.619 0.00 0.00 0.00 1.73
3489 3810 3.346315 CATCACAAGTGCCACTCCATAA 58.654 45.455 0.00 0.00 0.00 1.90
3490 3811 2.356022 CCATCACAAGTGCCACTCCATA 60.356 50.000 0.00 0.00 0.00 2.74
3491 3812 1.615116 CCATCACAAGTGCCACTCCAT 60.615 52.381 0.00 0.00 0.00 3.41
3492 3813 0.250858 CCATCACAAGTGCCACTCCA 60.251 55.000 0.00 0.00 0.00 3.86
3499 3820 4.437930 GCTTCTAACATCCATCACAAGTGC 60.438 45.833 0.00 0.00 0.00 4.40
3543 3864 0.798776 GTCTCACACCGGCTGATTTG 59.201 55.000 0.00 0.00 0.00 2.32
3546 3867 0.615331 ATTGTCTCACACCGGCTGAT 59.385 50.000 0.00 0.00 0.00 2.90
3568 3896 3.428452 GGAGGCAAAATAAAGGTTACGGC 60.428 47.826 0.00 0.00 0.00 5.68
3580 3908 1.351017 TCGAGTCAAGGGAGGCAAAAT 59.649 47.619 0.00 0.00 0.00 1.82
3598 3926 3.802685 AGGTTTTTCTTCGACTCAACTCG 59.197 43.478 0.00 0.00 34.83 4.18
3629 3957 0.250513 GGATTCAGCCTTCTCACCGT 59.749 55.000 0.00 0.00 0.00 4.83
3633 3961 3.415212 CACTTTGGATTCAGCCTTCTCA 58.585 45.455 0.00 0.00 0.00 3.27
3687 4015 4.792704 GCAAACATCCAACACCACTACTTG 60.793 45.833 0.00 0.00 0.00 3.16
3703 4039 5.673514 ACATTTCTTTCTGTTGGCAAACAT 58.326 33.333 7.22 0.00 45.12 2.71
3706 4042 5.976458 AGAACATTTCTTTCTGTTGGCAAA 58.024 33.333 0.00 0.00 36.36 3.68
3750 4086 2.291741 GGAGAGCCAAAAACACTCACTG 59.708 50.000 0.00 0.00 32.71 3.66
3808 4342 1.902508 TGGTACTCCCTCTGCAAAGAG 59.097 52.381 0.00 0.00 35.78 2.85
3811 4345 1.729586 AGTGGTACTCCCTCTGCAAA 58.270 50.000 0.00 0.00 35.71 3.68
3812 4346 1.729586 AAGTGGTACTCCCTCTGCAA 58.270 50.000 0.00 0.00 37.14 4.08
3813 4347 1.347707 CAAAGTGGTACTCCCTCTGCA 59.652 52.381 0.00 0.00 37.14 4.41
3814 4348 1.339151 CCAAAGTGGTACTCCCTCTGC 60.339 57.143 0.00 0.00 37.14 4.26
3815 4349 2.770164 CCAAAGTGGTACTCCCTCTG 57.230 55.000 0.00 0.00 37.14 3.35
3832 4366 9.263446 ACCAAACTAAGATAGTAAGATACACCA 57.737 33.333 0.00 0.00 38.26 4.17
3851 4385 4.286707 ACTAAGCCCTTCAAAACCAAACT 58.713 39.130 0.00 0.00 0.00 2.66
3865 4399 2.897326 ACATTGTTTGGGAACTAAGCCC 59.103 45.455 0.00 0.00 46.22 5.19
3871 4405 8.919145 TCAACTATAAAACATTGTTTGGGAACT 58.081 29.630 15.17 1.79 36.70 3.01
3878 4412 9.926158 TCATGCATCAACTATAAAACATTGTTT 57.074 25.926 8.97 8.97 0.00 2.83
3879 4413 9.926158 TTCATGCATCAACTATAAAACATTGTT 57.074 25.926 0.00 0.00 0.00 2.83
3884 4418 9.288124 CGAATTTCATGCATCAACTATAAAACA 57.712 29.630 0.00 0.00 0.00 2.83
3894 4428 7.712264 AAAAAGAACGAATTTCATGCATCAA 57.288 28.000 0.00 0.00 36.57 2.57
3919 4453 6.038161 TCTCTTTTCAATGTGCTTTTTCTCGA 59.962 34.615 0.00 0.00 0.00 4.04
3921 4455 7.199078 ACTCTCTTTTCAATGTGCTTTTTCTC 58.801 34.615 0.00 0.00 0.00 2.87
3929 4463 5.351458 ACCAAAACTCTCTTTTCAATGTGC 58.649 37.500 0.00 0.00 0.00 4.57
3941 4475 5.561679 AGGAGGAATGTAACCAAAACTCTC 58.438 41.667 0.00 0.00 0.00 3.20
3969 4505 2.966516 CTATGGGAACAGAGGGACTACC 59.033 54.545 0.00 0.00 45.91 3.18
3991 4527 3.531538 CGTCCCATAATGTACAGCTGTT 58.468 45.455 27.06 9.59 0.00 3.16
3993 4529 2.483876 CCGTCCCATAATGTACAGCTG 58.516 52.381 13.48 13.48 0.00 4.24
3995 4531 1.542547 CCCCGTCCCATAATGTACAGC 60.543 57.143 0.33 0.00 0.00 4.40
3996 4532 1.766496 ACCCCGTCCCATAATGTACAG 59.234 52.381 0.33 0.00 0.00 2.74
3998 4534 2.301009 CCTACCCCGTCCCATAATGTAC 59.699 54.545 0.00 0.00 0.00 2.90
3999 4535 2.090606 ACCTACCCCGTCCCATAATGTA 60.091 50.000 0.00 0.00 0.00 2.29
4000 4536 1.344701 ACCTACCCCGTCCCATAATGT 60.345 52.381 0.00 0.00 0.00 2.71
4001 4537 1.430992 ACCTACCCCGTCCCATAATG 58.569 55.000 0.00 0.00 0.00 1.90
4006 4542 0.178909 TTGTAACCTACCCCGTCCCA 60.179 55.000 0.00 0.00 0.00 4.37
4007 4543 0.538584 CTTGTAACCTACCCCGTCCC 59.461 60.000 0.00 0.00 0.00 4.46
4008 4544 0.107993 GCTTGTAACCTACCCCGTCC 60.108 60.000 0.00 0.00 0.00 4.79
4009 4545 0.609662 TGCTTGTAACCTACCCCGTC 59.390 55.000 0.00 0.00 0.00 4.79
4010 4546 1.065709 CATGCTTGTAACCTACCCCGT 60.066 52.381 0.00 0.00 0.00 5.28
4011 4547 1.663695 CATGCTTGTAACCTACCCCG 58.336 55.000 0.00 0.00 0.00 5.73
4012 4548 1.562475 TCCATGCTTGTAACCTACCCC 59.438 52.381 0.00 0.00 0.00 4.95
4013 4549 3.014623 GTTCCATGCTTGTAACCTACCC 58.985 50.000 0.00 0.00 0.00 3.69
4014 4550 3.681593 TGTTCCATGCTTGTAACCTACC 58.318 45.455 5.73 0.00 0.00 3.18
4015 4551 5.472137 TCTTTGTTCCATGCTTGTAACCTAC 59.528 40.000 5.73 0.00 0.00 3.18
4018 4554 4.278419 AGTCTTTGTTCCATGCTTGTAACC 59.722 41.667 5.73 0.00 0.00 2.85
4029 4565 6.040278 TGTGATTTGCATTAGTCTTTGTTCCA 59.960 34.615 0.00 0.00 0.00 3.53
4036 4572 4.393062 CGACCTGTGATTTGCATTAGTCTT 59.607 41.667 0.00 0.00 0.00 3.01
4052 4588 1.269998 GCTGTTCTACTGACGACCTGT 59.730 52.381 0.00 0.00 0.00 4.00
4267 4889 0.465460 ATAACGCGAACCCATGCCAT 60.465 50.000 15.93 0.00 0.00 4.40
4268 4890 1.078072 ATAACGCGAACCCATGCCA 60.078 52.632 15.93 0.00 0.00 4.92
4272 4898 2.159626 CGTTTTCATAACGCGAACCCAT 60.160 45.455 15.93 0.00 36.82 4.00
4284 4910 5.895636 ACAGATTGAATGGCGTTTTCATA 57.104 34.783 0.00 0.00 33.37 2.15
4288 4914 6.430000 AGTTAGTACAGATTGAATGGCGTTTT 59.570 34.615 0.00 0.00 0.00 2.43
4343 4970 9.941664 CTTATTAGCAATCACAGAGGTAAATTG 57.058 33.333 0.00 0.00 34.71 2.32
4462 5284 3.760684 GCAATTCATCTCAGAGGTGGTTT 59.239 43.478 10.99 2.39 0.00 3.27
4700 5522 4.569943 TGATGAGTAAAGTGACTTGGCTC 58.430 43.478 17.13 17.13 0.00 4.70
4701 5523 4.623932 TGATGAGTAAAGTGACTTGGCT 57.376 40.909 0.00 0.00 0.00 4.75
4702 5524 5.689383 TTTGATGAGTAAAGTGACTTGGC 57.311 39.130 0.00 0.00 0.00 4.52
4703 5525 9.219603 TCTATTTTGATGAGTAAAGTGACTTGG 57.780 33.333 0.00 0.00 0.00 3.61
4706 5528 9.778741 TTGTCTATTTTGATGAGTAAAGTGACT 57.221 29.630 0.00 0.00 0.00 3.41
4722 5552 5.705609 ACTTTGCCATCGTTGTCTATTTT 57.294 34.783 0.00 0.00 0.00 1.82
4782 5649 4.196971 TGATGAATGGATCACTTGCTCAG 58.803 43.478 0.00 0.00 41.93 3.35
4783 5650 4.196971 CTGATGAATGGATCACTTGCTCA 58.803 43.478 0.00 0.00 41.93 4.26
4793 5660 4.635223 CATGTACGTCCTGATGAATGGAT 58.365 43.478 0.00 0.00 34.58 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.