Multiple sequence alignment - TraesCS3A01G085500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G085500 chr3A 100.000 4604 0 0 816 5419 55049611 55045008 0.000000e+00 8503.0
1 TraesCS3A01G085500 chr3A 100.000 510 0 0 1 510 55050426 55049917 0.000000e+00 942.0
2 TraesCS3A01G085500 chr3A 86.316 95 13 0 1940 2034 713972464 713972370 2.670000e-18 104.0
3 TraesCS3A01G085500 chr3A 82.051 117 13 5 1678 1787 645409232 645409347 5.780000e-15 93.5
4 TraesCS3A01G085500 chr3B 93.582 4425 224 28 926 5331 66957452 66953069 0.000000e+00 6543.0
5 TraesCS3A01G085500 chr3B 90.099 202 8 8 309 510 66958067 66957878 9.010000e-63 252.0
6 TraesCS3A01G085500 chr3D 92.541 2011 94 26 3054 5048 43023417 43021447 0.000000e+00 2832.0
7 TraesCS3A01G085500 chr3D 92.475 1515 85 12 816 2317 43025784 43024286 0.000000e+00 2139.0
8 TraesCS3A01G085500 chr3D 90.571 1453 106 18 2784 4228 143484649 143483220 0.000000e+00 1895.0
9 TraesCS3A01G085500 chr3D 89.688 737 58 5 2280 2999 43024166 43023431 0.000000e+00 924.0
10 TraesCS3A01G085500 chr3D 84.031 382 23 19 146 510 43026272 43025912 3.130000e-87 333.0
11 TraesCS3A01G085500 chr6D 90.249 1446 111 18 2790 4228 298141187 298139765 0.000000e+00 1862.0
12 TraesCS3A01G085500 chr6D 87.855 387 38 4 1643 2029 91387610 91387233 3.850000e-121 446.0
13 TraesCS3A01G085500 chr6D 92.793 222 16 0 2072 2293 91387234 91387013 6.770000e-84 322.0
14 TraesCS3A01G085500 chr6D 81.761 318 47 10 1556 1870 86740440 86740131 6.970000e-64 255.0
15 TraesCS3A01G085500 chr6D 88.152 211 24 1 1934 2144 86740114 86739905 3.240000e-62 250.0
16 TraesCS3A01G085500 chr7B 91.207 762 59 8 3362 4119 634823824 634824581 0.000000e+00 1029.0
17 TraesCS3A01G085500 chr7B 87.615 218 26 1 1927 2144 413597231 413597015 9.010000e-63 252.0
18 TraesCS3A01G085500 chr7B 78.626 131 23 3 15 144 167623258 167623384 1.250000e-11 82.4
19 TraesCS3A01G085500 chr2B 90.944 519 33 9 2829 3345 13183381 13183887 0.000000e+00 686.0
20 TraesCS3A01G085500 chr2B 87.989 358 32 7 824 1174 55658017 55657664 3.910000e-111 412.0
21 TraesCS3A01G085500 chr2B 86.072 359 36 11 822 1174 126262311 126261961 1.840000e-99 374.0
22 TraesCS3A01G085500 chr2B 93.388 121 7 1 3710 3830 13183882 13184001 1.550000e-40 178.0
23 TraesCS3A01G085500 chr7A 85.971 613 58 8 1418 2029 219943685 219944270 9.910000e-177 630.0
24 TraesCS3A01G085500 chr7A 90.400 250 16 5 2784 3033 639885182 639884941 6.770000e-84 322.0
25 TraesCS3A01G085500 chr7A 91.628 215 18 0 2784 2998 439030597 439030811 1.140000e-76 298.0
26 TraesCS3A01G085500 chr7A 79.389 131 22 3 15 144 14780967 14781093 2.690000e-13 87.9
27 TraesCS3A01G085500 chr1B 85.912 362 39 7 3871 4228 253825684 253825331 5.120000e-100 375.0
28 TraesCS3A01G085500 chr1B 82.645 121 11 5 1679 1790 533962686 533962567 1.240000e-16 99.0
29 TraesCS3A01G085500 chr5D 85.675 363 37 9 3871 4228 462907641 462907993 8.580000e-98 368.0
30 TraesCS3A01G085500 chr5D 95.139 144 7 0 1 144 197417193 197417050 1.520000e-55 228.0
31 TraesCS3A01G085500 chr1D 85.635 362 38 10 3871 4228 235547798 235547447 8.580000e-98 368.0
32 TraesCS3A01G085500 chr6A 92.237 219 17 0 2072 2290 371922485 371922703 1.470000e-80 311.0
33 TraesCS3A01G085500 chr6A 89.637 193 20 0 1925 2117 608336833 608337025 4.190000e-61 246.0
34 TraesCS3A01G085500 chr6A 85.263 190 22 4 1684 1870 608336639 608336825 1.990000e-44 191.0
35 TraesCS3A01G085500 chr6A 84.466 103 8 3 1693 1787 291415228 291415330 1.610000e-15 95.3
36 TraesCS3A01G085500 chr7D 90.086 232 22 1 3871 4101 635929560 635929329 3.170000e-77 300.0
37 TraesCS3A01G085500 chr5A 89.954 219 22 0 2072 2290 389887186 389887404 3.200000e-72 283.0
38 TraesCS3A01G085500 chr5A 91.509 106 8 1 37 142 573868491 573868387 1.570000e-30 145.0
39 TraesCS3A01G085500 chr2A 89.796 147 12 2 1 144 2872870 2872724 9.270000e-43 185.0
40 TraesCS3A01G085500 chr4B 86.577 149 14 3 1 144 258738187 258738040 5.620000e-35 159.0
41 TraesCS3A01G085500 chr4B 86.111 144 19 1 1 144 644783432 644783574 2.610000e-33 154.0
42 TraesCS3A01G085500 chr4B 79.310 145 28 2 1 144 545147227 545147370 3.450000e-17 100.0
43 TraesCS3A01G085500 chr4A 79.389 131 22 3 15 144 476983576 476983450 2.690000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G085500 chr3A 55045008 55050426 5418 True 4722.5 8503 100.00000 1 5419 2 chr3A.!!$R2 5418
1 TraesCS3A01G085500 chr3B 66953069 66958067 4998 True 3397.5 6543 91.84050 309 5331 2 chr3B.!!$R1 5022
2 TraesCS3A01G085500 chr3D 143483220 143484649 1429 True 1895.0 1895 90.57100 2784 4228 1 chr3D.!!$R1 1444
3 TraesCS3A01G085500 chr3D 43021447 43026272 4825 True 1557.0 2832 89.68375 146 5048 4 chr3D.!!$R2 4902
4 TraesCS3A01G085500 chr6D 298139765 298141187 1422 True 1862.0 1862 90.24900 2790 4228 1 chr6D.!!$R1 1438
5 TraesCS3A01G085500 chr6D 91387013 91387610 597 True 384.0 446 90.32400 1643 2293 2 chr6D.!!$R3 650
6 TraesCS3A01G085500 chr6D 86739905 86740440 535 True 252.5 255 84.95650 1556 2144 2 chr6D.!!$R2 588
7 TraesCS3A01G085500 chr7B 634823824 634824581 757 False 1029.0 1029 91.20700 3362 4119 1 chr7B.!!$F2 757
8 TraesCS3A01G085500 chr2B 13183381 13184001 620 False 432.0 686 92.16600 2829 3830 2 chr2B.!!$F1 1001
9 TraesCS3A01G085500 chr7A 219943685 219944270 585 False 630.0 630 85.97100 1418 2029 1 chr7A.!!$F2 611

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
123 124 0.039437 CCACTACAGAGACGTGCGTT 60.039 55.000 0.00 0.00 0.00 4.84 F
149 150 0.659957 GCATGCTTACTAGTGCTGGC 59.340 55.000 11.37 5.85 34.85 4.85 F
864 885 0.764890 CATCGATTTAGCCTCCCCCA 59.235 55.000 0.00 0.00 0.00 4.96 F
1949 2013 0.179936 CCTGAGCTCATCCTGTTCCC 59.820 60.000 18.63 0.00 0.00 3.97 F
2496 2728 1.562575 CCGGTTTACGTGTCTGCACC 61.563 60.000 0.00 0.00 42.39 5.01 F
2963 3205 1.822990 TGGAGTAGTACCTTTCAGGCG 59.177 52.381 0.00 0.00 39.63 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1182 1231 0.543749 GAGGGGGTGAGATGGTGAAG 59.456 60.000 0.00 0.00 0.00 3.02 R
1234 1288 1.021920 GGACGAGCCTTCCTTCTTGC 61.022 60.000 0.00 0.00 0.00 4.01 R
2156 2220 1.061131 GTCATCTGGAAATGTCACGCG 59.939 52.381 3.53 3.53 0.00 6.01 R
3182 3427 1.000843 TCCTCGTGTTGTGTGATCCTG 59.999 52.381 0.00 0.00 0.00 3.86 R
3889 4138 1.066143 GGCTAGTACTTTCAGGCAGCA 60.066 52.381 11.71 0.00 35.11 4.41 R
4917 5179 0.766674 ACCACCAGCCAACAGGACTA 60.767 55.000 0.00 0.00 0.00 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.351604 CGTCGAAGTTGCAAAGCTC 57.648 52.632 0.00 0.00 0.00 4.09
19 20 0.861837 CGTCGAAGTTGCAAAGCTCT 59.138 50.000 0.00 0.00 0.00 4.09
20 21 1.136502 CGTCGAAGTTGCAAAGCTCTC 60.137 52.381 0.00 0.00 0.00 3.20
21 22 1.136502 GTCGAAGTTGCAAAGCTCTCG 60.137 52.381 0.00 5.67 0.00 4.04
22 23 0.164647 CGAAGTTGCAAAGCTCTCGG 59.835 55.000 0.00 0.00 0.00 4.63
23 24 0.519077 GAAGTTGCAAAGCTCTCGGG 59.481 55.000 0.00 0.00 0.00 5.14
24 25 0.890996 AAGTTGCAAAGCTCTCGGGG 60.891 55.000 0.00 0.00 0.00 5.73
25 26 1.600916 GTTGCAAAGCTCTCGGGGT 60.601 57.895 0.00 0.00 0.00 4.95
26 27 1.302511 TTGCAAAGCTCTCGGGGTC 60.303 57.895 0.00 0.00 0.00 4.46
27 28 2.815647 GCAAAGCTCTCGGGGTCG 60.816 66.667 0.00 0.00 37.82 4.79
28 29 2.815647 CAAAGCTCTCGGGGTCGC 60.816 66.667 0.00 0.00 36.13 5.19
29 30 4.083862 AAAGCTCTCGGGGTCGCC 62.084 66.667 0.00 0.00 36.13 5.54
34 35 4.689549 TCTCGGGGTCGCCTCCAA 62.690 66.667 4.18 0.00 36.13 3.53
35 36 3.702048 CTCGGGGTCGCCTCCAAA 61.702 66.667 4.18 0.00 36.13 3.28
36 37 3.243053 TCGGGGTCGCCTCCAAAA 61.243 61.111 4.18 0.00 36.13 2.44
37 38 3.053896 CGGGGTCGCCTCCAAAAC 61.054 66.667 4.18 0.00 0.00 2.43
38 39 3.053896 GGGGTCGCCTCCAAAACG 61.054 66.667 0.00 0.00 0.00 3.60
39 40 2.281276 GGGTCGCCTCCAAAACGT 60.281 61.111 0.00 0.00 0.00 3.99
40 41 2.322830 GGGTCGCCTCCAAAACGTC 61.323 63.158 0.00 0.00 0.00 4.34
41 42 2.322830 GGTCGCCTCCAAAACGTCC 61.323 63.158 0.00 0.00 0.00 4.79
42 43 1.595929 GTCGCCTCCAAAACGTCCA 60.596 57.895 0.00 0.00 0.00 4.02
43 44 1.595929 TCGCCTCCAAAACGTCCAC 60.596 57.895 0.00 0.00 0.00 4.02
44 45 1.597027 CGCCTCCAAAACGTCCACT 60.597 57.895 0.00 0.00 0.00 4.00
45 46 1.841663 CGCCTCCAAAACGTCCACTG 61.842 60.000 0.00 0.00 0.00 3.66
46 47 1.949257 CCTCCAAAACGTCCACTGC 59.051 57.895 0.00 0.00 0.00 4.40
47 48 0.535102 CCTCCAAAACGTCCACTGCT 60.535 55.000 0.00 0.00 0.00 4.24
48 49 0.868406 CTCCAAAACGTCCACTGCTC 59.132 55.000 0.00 0.00 0.00 4.26
49 50 0.534203 TCCAAAACGTCCACTGCTCC 60.534 55.000 0.00 0.00 0.00 4.70
50 51 0.817634 CCAAAACGTCCACTGCTCCA 60.818 55.000 0.00 0.00 0.00 3.86
51 52 1.021202 CAAAACGTCCACTGCTCCAA 58.979 50.000 0.00 0.00 0.00 3.53
52 53 1.021968 AAAACGTCCACTGCTCCAAC 58.978 50.000 0.00 0.00 0.00 3.77
53 54 0.107410 AAACGTCCACTGCTCCAACA 60.107 50.000 0.00 0.00 0.00 3.33
54 55 0.814010 AACGTCCACTGCTCCAACAC 60.814 55.000 0.00 0.00 0.00 3.32
55 56 2.310233 CGTCCACTGCTCCAACACG 61.310 63.158 0.00 0.00 0.00 4.49
56 57 2.280797 TCCACTGCTCCAACACGC 60.281 61.111 0.00 0.00 0.00 5.34
57 58 3.357079 CCACTGCTCCAACACGCC 61.357 66.667 0.00 0.00 0.00 5.68
58 59 2.281070 CACTGCTCCAACACGCCT 60.281 61.111 0.00 0.00 0.00 5.52
59 60 1.893808 CACTGCTCCAACACGCCTT 60.894 57.895 0.00 0.00 0.00 4.35
60 61 1.893808 ACTGCTCCAACACGCCTTG 60.894 57.895 0.00 0.00 0.00 3.61
61 62 3.259425 CTGCTCCAACACGCCTTGC 62.259 63.158 0.00 0.00 0.00 4.01
75 76 3.932580 CTTGCGCACTCAGCCGGTA 62.933 63.158 11.12 0.00 41.38 4.02
76 77 4.735132 TGCGCACTCAGCCGGTAC 62.735 66.667 5.66 0.00 41.38 3.34
80 81 4.814294 CACTCAGCCGGTACCGCC 62.814 72.222 29.15 19.24 38.24 6.13
82 83 4.208686 CTCAGCCGGTACCGCCTC 62.209 72.222 29.15 18.46 38.24 4.70
83 84 4.753662 TCAGCCGGTACCGCCTCT 62.754 66.667 29.15 20.33 38.24 3.69
84 85 4.514577 CAGCCGGTACCGCCTCTG 62.515 72.222 29.15 26.33 38.24 3.35
93 94 4.227134 CCGCCTCTGGGGTCATCG 62.227 72.222 0.00 0.00 39.68 3.84
94 95 4.899239 CGCCTCTGGGGTCATCGC 62.899 72.222 0.00 0.00 37.43 4.58
95 96 4.554036 GCCTCTGGGGTCATCGCC 62.554 72.222 0.00 0.00 45.39 5.54
102 103 3.861797 GGGTCATCGCCCCGACAT 61.862 66.667 0.00 0.00 42.89 3.06
103 104 2.504274 GGGTCATCGCCCCGACATA 61.504 63.158 0.00 0.00 42.89 2.29
104 105 1.300697 GGTCATCGCCCCGACATAC 60.301 63.158 0.00 0.00 39.18 2.39
105 106 1.300697 GTCATCGCCCCGACATACC 60.301 63.158 0.00 0.00 39.18 2.73
106 107 1.758906 TCATCGCCCCGACATACCA 60.759 57.895 0.00 0.00 39.18 3.25
107 108 1.594293 CATCGCCCCGACATACCAC 60.594 63.158 0.00 0.00 39.18 4.16
108 109 1.760875 ATCGCCCCGACATACCACT 60.761 57.895 0.00 0.00 39.18 4.00
109 110 0.468585 ATCGCCCCGACATACCACTA 60.469 55.000 0.00 0.00 39.18 2.74
110 111 1.066918 CGCCCCGACATACCACTAC 59.933 63.158 0.00 0.00 0.00 2.73
111 112 1.669049 CGCCCCGACATACCACTACA 61.669 60.000 0.00 0.00 0.00 2.74
112 113 0.104304 GCCCCGACATACCACTACAG 59.896 60.000 0.00 0.00 0.00 2.74
113 114 1.771565 CCCCGACATACCACTACAGA 58.228 55.000 0.00 0.00 0.00 3.41
114 115 1.681793 CCCCGACATACCACTACAGAG 59.318 57.143 0.00 0.00 0.00 3.35
115 116 2.651455 CCCGACATACCACTACAGAGA 58.349 52.381 0.00 0.00 0.00 3.10
116 117 2.358267 CCCGACATACCACTACAGAGAC 59.642 54.545 0.00 0.00 0.00 3.36
117 118 2.031807 CCGACATACCACTACAGAGACG 59.968 54.545 0.00 0.00 0.00 4.18
118 119 2.676839 CGACATACCACTACAGAGACGT 59.323 50.000 0.00 0.00 0.00 4.34
119 120 3.485381 CGACATACCACTACAGAGACGTG 60.485 52.174 0.00 0.00 0.00 4.49
120 121 2.163815 ACATACCACTACAGAGACGTGC 59.836 50.000 0.00 0.00 0.00 5.34
121 122 0.800631 TACCACTACAGAGACGTGCG 59.199 55.000 0.00 0.00 0.00 5.34
122 123 1.170919 ACCACTACAGAGACGTGCGT 61.171 55.000 0.00 0.00 0.00 5.24
123 124 0.039437 CCACTACAGAGACGTGCGTT 60.039 55.000 0.00 0.00 0.00 4.84
124 125 1.053048 CACTACAGAGACGTGCGTTG 58.947 55.000 0.00 0.00 0.00 4.10
125 126 0.663568 ACTACAGAGACGTGCGTTGC 60.664 55.000 0.00 0.00 0.00 4.17
126 127 0.663269 CTACAGAGACGTGCGTTGCA 60.663 55.000 0.00 0.00 35.60 4.08
143 144 1.359848 GCACGTGCATGCTTACTAGT 58.640 50.000 34.52 0.00 42.62 2.57
144 145 1.061131 GCACGTGCATGCTTACTAGTG 59.939 52.381 34.52 18.13 42.62 2.74
145 146 1.061131 CACGTGCATGCTTACTAGTGC 59.939 52.381 20.33 1.41 38.05 4.40
146 147 1.066858 ACGTGCATGCTTACTAGTGCT 60.067 47.619 20.33 0.00 38.37 4.40
147 148 1.325640 CGTGCATGCTTACTAGTGCTG 59.674 52.381 20.33 3.42 38.37 4.41
148 149 1.667724 GTGCATGCTTACTAGTGCTGG 59.332 52.381 20.33 0.00 38.37 4.85
149 150 0.659957 GCATGCTTACTAGTGCTGGC 59.340 55.000 11.37 5.85 34.85 4.85
150 151 2.013563 GCATGCTTACTAGTGCTGGCA 61.014 52.381 11.37 10.51 34.85 4.92
151 152 2.358957 CATGCTTACTAGTGCTGGCAA 58.641 47.619 5.39 0.00 33.44 4.52
154 155 2.813754 TGCTTACTAGTGCTGGCAAAAG 59.186 45.455 5.39 0.00 0.00 2.27
157 158 2.348411 ACTAGTGCTGGCAAAAGTGT 57.652 45.000 0.00 0.00 0.00 3.55
162 163 6.001460 ACTAGTGCTGGCAAAAGTGTAATAA 58.999 36.000 0.00 0.00 0.00 1.40
168 169 5.554822 TGGCAAAAGTGTAATAATCGGTC 57.445 39.130 0.00 0.00 0.00 4.79
204 205 8.696410 TTTGAGGGCACGAATTTTATTTTATC 57.304 30.769 0.00 0.00 0.00 1.75
231 232 2.550855 CCATCCGTCCATTCGATCCAAT 60.551 50.000 0.00 0.00 0.00 3.16
234 241 3.925379 TCCGTCCATTCGATCCAATATG 58.075 45.455 0.00 0.00 0.00 1.78
236 243 4.525100 TCCGTCCATTCGATCCAATATGTA 59.475 41.667 0.00 0.00 0.00 2.29
238 245 5.470368 CGTCCATTCGATCCAATATGTAGT 58.530 41.667 0.00 0.00 0.00 2.73
240 247 5.639506 GTCCATTCGATCCAATATGTAGTGG 59.360 44.000 0.21 0.21 42.47 4.00
251 258 4.814224 ATATGTAGTGGCCCATCCTTTT 57.186 40.909 0.00 0.00 35.26 2.27
252 259 2.507407 TGTAGTGGCCCATCCTTTTC 57.493 50.000 0.00 0.00 35.26 2.29
253 260 1.992557 TGTAGTGGCCCATCCTTTTCT 59.007 47.619 0.00 0.00 35.26 2.52
418 439 3.189606 ACAAGAGAGAGAGAGAGAGGGA 58.810 50.000 0.00 0.00 0.00 4.20
419 440 3.200825 ACAAGAGAGAGAGAGAGAGGGAG 59.799 52.174 0.00 0.00 0.00 4.30
420 441 3.421394 AGAGAGAGAGAGAGAGGGAGA 57.579 52.381 0.00 0.00 0.00 3.71
421 442 3.312890 AGAGAGAGAGAGAGAGGGAGAG 58.687 54.545 0.00 0.00 0.00 3.20
422 443 2.370189 GAGAGAGAGAGAGAGGGAGAGG 59.630 59.091 0.00 0.00 0.00 3.69
423 444 1.421646 GAGAGAGAGAGAGGGAGAGGG 59.578 61.905 0.00 0.00 0.00 4.30
857 878 1.862806 GAGCCGCATCGATTTAGCC 59.137 57.895 0.00 0.00 0.00 3.93
862 883 0.951040 CGCATCGATTTAGCCTCCCC 60.951 60.000 0.00 0.00 0.00 4.81
864 885 0.764890 CATCGATTTAGCCTCCCCCA 59.235 55.000 0.00 0.00 0.00 4.96
865 886 0.765510 ATCGATTTAGCCTCCCCCAC 59.234 55.000 0.00 0.00 0.00 4.61
866 887 1.227556 CGATTTAGCCTCCCCCACG 60.228 63.158 0.00 0.00 0.00 4.94
867 888 1.526225 GATTTAGCCTCCCCCACGC 60.526 63.158 0.00 0.00 0.00 5.34
868 889 3.400599 ATTTAGCCTCCCCCACGCG 62.401 63.158 3.53 3.53 0.00 6.01
880 902 3.781307 CACGCGAATCCCCCTCCA 61.781 66.667 15.93 0.00 0.00 3.86
885 907 1.770110 CGAATCCCCCTCCATCCCA 60.770 63.158 0.00 0.00 0.00 4.37
893 915 2.202797 CTCCATCCCAGTGACGCG 60.203 66.667 3.53 3.53 0.00 6.01
921 943 1.525077 GATTGCCCCGTGCCGATTA 60.525 57.895 0.00 0.00 40.16 1.75
933 974 4.925576 CGATTACGCCCGCTCGCT 62.926 66.667 0.00 0.00 0.00 4.93
1141 1190 2.456119 CCGCTGCCTGTGTCGATTC 61.456 63.158 0.00 0.00 0.00 2.52
1160 1209 1.115930 CGATGAGGATCCCCCGTTCT 61.116 60.000 8.55 0.00 40.87 3.01
1169 1218 1.719529 TCCCCCGTTCTGTTCTGTTA 58.280 50.000 0.00 0.00 0.00 2.41
1174 1223 4.563993 CCCCCGTTCTGTTCTGTTATGTTA 60.564 45.833 0.00 0.00 0.00 2.41
1176 1225 6.342906 CCCCGTTCTGTTCTGTTATGTTATA 58.657 40.000 0.00 0.00 0.00 0.98
1180 1229 9.093970 CCGTTCTGTTCTGTTATGTTATATTCA 57.906 33.333 0.00 0.00 0.00 2.57
1181 1230 9.901724 CGTTCTGTTCTGTTATGTTATATTCAC 57.098 33.333 0.00 0.00 0.00 3.18
1234 1288 2.022195 CATCCAGTTCATGAAGCAGGG 58.978 52.381 8.80 8.20 0.00 4.45
1302 1356 4.405680 TGTTGTCTCAGGTCTTCTTCTTCA 59.594 41.667 0.00 0.00 0.00 3.02
1303 1357 5.070981 TGTTGTCTCAGGTCTTCTTCTTCAT 59.929 40.000 0.00 0.00 0.00 2.57
1304 1358 5.398603 TGTCTCAGGTCTTCTTCTTCATC 57.601 43.478 0.00 0.00 0.00 2.92
1325 1379 7.500992 TCATCCGCCTCTTTATCATAATATCC 58.499 38.462 0.00 0.00 0.00 2.59
1372 1426 1.904865 ACAGACGCTAACCCGACCA 60.905 57.895 0.00 0.00 0.00 4.02
1500 1555 0.744057 GCTGCCTGCTTCCTCTCTTC 60.744 60.000 0.00 0.00 38.95 2.87
1554 1609 2.568623 ACCATGTCTTCTTCGCCTTT 57.431 45.000 0.00 0.00 0.00 3.11
1595 1651 3.758554 GCATCAACCTATGTGAACCAAGT 59.241 43.478 0.00 0.00 0.00 3.16
1675 1735 8.023128 GGAACCGAATTGAATTGGTATCATATG 58.977 37.037 10.82 0.00 33.45 1.78
1698 1759 7.681939 TGTTTTTCTTTATATCGGCTGAAGT 57.318 32.000 0.00 0.00 0.00 3.01
1827 1888 6.095300 TGTCAACTTGGTGCAAGGATAATATG 59.905 38.462 0.00 0.00 44.81 1.78
1949 2013 0.179936 CCTGAGCTCATCCTGTTCCC 59.820 60.000 18.63 0.00 0.00 3.97
2099 2163 3.674753 GCAAACAATTGGATCAGGTTTCG 59.325 43.478 10.83 0.00 37.02 3.46
2130 2194 6.866770 TGTTCATGTAAGTTTCTTCGTCCTAG 59.133 38.462 0.00 0.00 0.00 3.02
2290 2359 6.425114 GTCGGTGACATATTGATGAAGCTTAT 59.575 38.462 0.00 0.00 36.48 1.73
2385 2611 7.096477 GCTCAGTTAAAACAGCTAAACACATTG 60.096 37.037 0.00 0.00 0.00 2.82
2435 2667 6.527372 GCAAAACATTTTTCTTGCATTGTTGT 59.473 30.769 0.00 0.00 31.38 3.32
2485 2717 5.160641 TGTAGACGTACATTTCCGGTTTAC 58.839 41.667 0.00 0.00 34.02 2.01
2496 2728 1.562575 CCGGTTTACGTGTCTGCACC 61.563 60.000 0.00 0.00 42.39 5.01
2499 2731 2.064014 GGTTTACGTGTCTGCACCTAC 58.936 52.381 0.00 0.00 42.39 3.18
2508 2740 3.735746 GTGTCTGCACCTACAAAATTTGC 59.264 43.478 5.52 0.00 39.61 3.68
2537 2771 6.573664 TCTACTTTGTGCTTGTATGCATTT 57.426 33.333 3.54 0.00 45.23 2.32
2779 3014 2.106511 CCACAGGGAAAGAGGTTTGAGA 59.893 50.000 0.00 0.00 35.59 3.27
2807 3042 3.862642 GCCCGCATATTTGTTGTTTCCAA 60.863 43.478 0.00 0.00 0.00 3.53
2963 3205 1.822990 TGGAGTAGTACCTTTCAGGCG 59.177 52.381 0.00 0.00 39.63 5.52
2986 3228 4.033358 GTGCACTGTACATGCTTGTATCTC 59.967 45.833 22.31 4.24 43.77 2.75
2991 3233 5.047021 ACTGTACATGCTTGTATCTCTGTGT 60.047 40.000 14.79 5.12 40.35 3.72
2992 3234 5.793817 TGTACATGCTTGTATCTCTGTGTT 58.206 37.500 14.79 0.00 40.35 3.32
2993 3235 5.869344 TGTACATGCTTGTATCTCTGTGTTC 59.131 40.000 14.79 0.44 40.35 3.18
2994 3236 4.898320 ACATGCTTGTATCTCTGTGTTCA 58.102 39.130 2.92 0.00 33.16 3.18
2995 3237 5.308014 ACATGCTTGTATCTCTGTGTTCAA 58.692 37.500 2.92 0.00 33.16 2.69
2996 3238 5.942236 ACATGCTTGTATCTCTGTGTTCAAT 59.058 36.000 2.92 0.00 33.16 2.57
2997 3239 7.105588 ACATGCTTGTATCTCTGTGTTCAATA 58.894 34.615 2.92 0.00 33.16 1.90
2998 3240 6.968131 TGCTTGTATCTCTGTGTTCAATAC 57.032 37.500 0.00 0.00 0.00 1.89
3061 3303 9.209175 AGTAGTAAGTGCAAACTAAATCTCTTG 57.791 33.333 6.44 0.00 30.32 3.02
3156 3398 6.554334 TGTTTTTCTGTAGAGGTTATGTGC 57.446 37.500 0.00 0.00 0.00 4.57
3182 3427 7.402640 CGCTAACCTTTTGACTGAAATATCTC 58.597 38.462 0.00 0.00 0.00 2.75
3267 3513 3.181478 CCGAAAGCCGATACTCTTAAGGT 60.181 47.826 1.85 2.39 41.76 3.50
3380 3626 2.828877 TGGTTCGAATGTCGTGTTCTT 58.171 42.857 0.00 0.00 41.35 2.52
3388 3634 5.692654 TCGAATGTCGTGTTCTTTGTGAATA 59.307 36.000 0.00 0.00 41.35 1.75
3396 3642 8.709646 GTCGTGTTCTTTGTGAATACTAATCTT 58.290 33.333 0.00 0.00 42.32 2.40
3502 3749 5.068987 TCATTCACCCTTTTTCCAGTTTCAG 59.931 40.000 0.00 0.00 0.00 3.02
3636 3884 6.442541 TCCACCTAAGGTCAGTTTCAATTA 57.557 37.500 0.00 0.00 31.02 1.40
3637 3885 6.235664 TCCACCTAAGGTCAGTTTCAATTAC 58.764 40.000 0.00 0.00 31.02 1.89
3784 4032 6.321435 GCAATACCTAAAAGGGTAAGAGCATT 59.679 38.462 0.00 0.00 43.92 3.56
3883 4132 7.466805 CCTAATGATTGTTGTACACAGTGATG 58.533 38.462 7.81 0.00 36.48 3.07
3889 4138 4.702831 TGTTGTACACAGTGATGTGACAT 58.297 39.130 14.85 0.00 42.02 3.06
3908 4157 2.386661 TGCTGCCTGAAAGTACTAGC 57.613 50.000 0.00 0.00 0.00 3.42
4067 4318 4.259356 ACGGGCTGTAGAAAAGAATAACC 58.741 43.478 0.00 0.00 0.00 2.85
4147 4399 4.202010 CCGCCATCTTTTTAACATGGTAGG 60.202 45.833 0.00 0.00 39.55 3.18
4358 4615 0.382873 CTTCAAGCACAGCAGCAACA 59.617 50.000 0.00 0.00 36.85 3.33
4567 4828 2.412591 AGATATGCAGGGCAGGTAAGT 58.587 47.619 0.00 0.00 43.65 2.24
4650 4911 8.925161 TTTGTAGAAAGCAAAATATGTATGGC 57.075 30.769 0.00 0.00 33.51 4.40
4665 4926 2.521224 GGCGGAGATACGAGGGGT 60.521 66.667 0.00 0.00 35.47 4.95
4684 4946 3.499202 GGGTGGTGATATGATGGCAAGAT 60.499 47.826 0.00 0.00 0.00 2.40
4706 4968 7.265673 AGATATGCGTTAAGTACACTGTCATT 58.734 34.615 0.00 0.00 0.00 2.57
4707 4969 4.983215 TGCGTTAAGTACACTGTCATTG 57.017 40.909 0.00 0.00 0.00 2.82
4708 4970 4.373527 TGCGTTAAGTACACTGTCATTGT 58.626 39.130 1.12 1.12 0.00 2.71
4709 4971 5.530712 TGCGTTAAGTACACTGTCATTGTA 58.469 37.500 0.00 0.00 0.00 2.41
4710 4972 5.403166 TGCGTTAAGTACACTGTCATTGTAC 59.597 40.000 20.35 20.35 46.58 2.90
4716 4978 5.824243 GTACACTGTCATTGTACACTGTC 57.176 43.478 22.09 8.08 45.84 3.51
4717 4979 4.400529 ACACTGTCATTGTACACTGTCA 57.599 40.909 12.40 11.88 0.00 3.58
4718 4980 4.960938 ACACTGTCATTGTACACTGTCAT 58.039 39.130 12.40 2.58 0.00 3.06
4741 5003 5.968528 TTACTCGCATGGTTAATTTTGGT 57.031 34.783 0.00 0.00 0.00 3.67
4831 5093 5.559770 TGGAAGATGCAGATGAAAACAGTA 58.440 37.500 0.00 0.00 0.00 2.74
4833 5095 6.660521 TGGAAGATGCAGATGAAAACAGTATT 59.339 34.615 0.00 0.00 0.00 1.89
4861 5123 2.614520 GAGTCTAGCGAGTCATGTAGCA 59.385 50.000 0.00 0.00 39.06 3.49
4917 5179 6.571150 GCAAGAATGTGGCTGATAAGAAAAGT 60.571 38.462 0.00 0.00 0.00 2.66
4920 5182 7.398024 AGAATGTGGCTGATAAGAAAAGTAGT 58.602 34.615 0.00 0.00 0.00 2.73
4925 5187 5.248477 TGGCTGATAAGAAAAGTAGTCCTGT 59.752 40.000 0.00 0.00 0.00 4.00
4927 5189 6.092807 GGCTGATAAGAAAAGTAGTCCTGTTG 59.907 42.308 0.00 0.00 0.00 3.33
4995 5257 6.420008 GCACCATGAATAAAATCAATCTGCTC 59.580 38.462 0.00 0.00 32.06 4.26
4998 5260 7.341256 ACCATGAATAAAATCAATCTGCTCAGT 59.659 33.333 0.00 0.00 32.06 3.41
5029 5297 2.493278 GCACCTGATTATTGCTGTGGTT 59.507 45.455 0.00 0.00 33.26 3.67
5056 5324 9.169468 CTGTTGTGTGTGTTAATTCAGAAATAC 57.831 33.333 0.00 0.00 0.00 1.89
5095 5363 8.307483 TCGTTTGATGAAGAGTTCTTTCTATCT 58.693 33.333 0.00 0.00 36.11 1.98
5172 5440 9.453325 GTTATCTCTCGGTTGTCTAAGAAATAG 57.547 37.037 0.00 0.00 0.00 1.73
5179 5447 6.072893 TCGGTTGTCTAAGAAATAGCAAAACC 60.073 38.462 0.00 0.00 36.14 3.27
5189 5457 7.624360 AGAAATAGCAAAACCGTTGATCATA 57.376 32.000 0.00 0.00 0.00 2.15
5192 5460 8.500753 AAATAGCAAAACCGTTGATCATAGTA 57.499 30.769 0.00 0.00 0.00 1.82
5196 5464 6.374333 AGCAAAACCGTTGATCATAGTACATT 59.626 34.615 0.00 0.00 0.00 2.71
5198 5466 6.583912 AAACCGTTGATCATAGTACATTCG 57.416 37.500 0.00 0.00 0.00 3.34
5205 5473 5.901552 TGATCATAGTACATTCGTGCAAGA 58.098 37.500 0.00 0.00 0.00 3.02
5212 5480 0.449388 CATTCGTGCAAGAAGCCTCC 59.551 55.000 19.62 0.00 44.83 4.30
5213 5481 0.678048 ATTCGTGCAAGAAGCCTCCC 60.678 55.000 19.62 0.00 44.83 4.30
5214 5482 1.768684 TTCGTGCAAGAAGCCTCCCT 61.769 55.000 11.22 0.00 44.83 4.20
5215 5483 1.302832 CGTGCAAGAAGCCTCCCTT 60.303 57.895 0.00 0.00 44.83 3.95
5281 5549 6.645827 TGTGCATGGAAATGTGAAAAATACAG 59.354 34.615 0.00 0.00 0.00 2.74
5285 5553 7.599998 GCATGGAAATGTGAAAAATACAGAAGT 59.400 33.333 0.00 0.00 0.00 3.01
5307 5575 2.455674 TCGACTTTGATGGACACTGG 57.544 50.000 0.00 0.00 0.00 4.00
5314 5582 0.692476 TGATGGACACTGGGAAGGTG 59.308 55.000 0.00 0.00 40.19 4.00
5325 5593 1.004277 TGGGAAGGTGTTAGTGCATCC 59.996 52.381 0.00 0.00 0.00 3.51
5327 5595 2.554344 GGGAAGGTGTTAGTGCATCCAA 60.554 50.000 0.00 0.00 0.00 3.53
5351 5619 6.791867 AAAAAGAAAAAGGAAGGTAGCACT 57.208 33.333 0.00 0.00 0.00 4.40
5352 5620 7.891498 AAAAAGAAAAAGGAAGGTAGCACTA 57.109 32.000 0.00 0.00 0.00 2.74
5353 5621 7.511959 AAAAGAAAAAGGAAGGTAGCACTAG 57.488 36.000 0.00 0.00 0.00 2.57
5354 5622 5.827326 AGAAAAAGGAAGGTAGCACTAGT 57.173 39.130 0.00 0.00 0.00 2.57
5355 5623 5.552178 AGAAAAAGGAAGGTAGCACTAGTG 58.448 41.667 18.93 18.93 0.00 2.74
5356 5624 5.307196 AGAAAAAGGAAGGTAGCACTAGTGA 59.693 40.000 27.08 3.31 0.00 3.41
5357 5625 5.562298 AAAAGGAAGGTAGCACTAGTGAA 57.438 39.130 27.08 10.59 0.00 3.18
5358 5626 4.538746 AAGGAAGGTAGCACTAGTGAAC 57.461 45.455 27.08 20.92 0.00 3.18
5359 5627 2.492484 AGGAAGGTAGCACTAGTGAACG 59.508 50.000 27.08 0.00 0.00 3.95
5360 5628 2.416972 GGAAGGTAGCACTAGTGAACGG 60.417 54.545 27.08 0.00 0.00 4.44
5361 5629 1.183549 AGGTAGCACTAGTGAACGGG 58.816 55.000 27.08 0.00 0.00 5.28
5362 5630 0.893447 GGTAGCACTAGTGAACGGGT 59.107 55.000 27.08 7.07 0.00 5.28
5363 5631 1.403780 GGTAGCACTAGTGAACGGGTG 60.404 57.143 27.08 0.00 0.00 4.61
5364 5632 1.271656 GTAGCACTAGTGAACGGGTGT 59.728 52.381 27.08 2.42 32.90 4.16
5365 5633 0.756903 AGCACTAGTGAACGGGTGTT 59.243 50.000 27.08 0.00 42.23 3.32
5366 5634 1.965643 AGCACTAGTGAACGGGTGTTA 59.034 47.619 27.08 0.00 38.78 2.41
5367 5635 2.029290 AGCACTAGTGAACGGGTGTTAG 60.029 50.000 27.08 0.00 38.78 2.34
5368 5636 2.288640 GCACTAGTGAACGGGTGTTAGT 60.289 50.000 27.08 0.00 38.78 2.24
5369 5637 3.801293 GCACTAGTGAACGGGTGTTAGTT 60.801 47.826 27.08 0.00 38.78 2.24
5370 5638 4.559300 GCACTAGTGAACGGGTGTTAGTTA 60.559 45.833 27.08 0.00 38.78 2.24
5371 5639 4.919754 CACTAGTGAACGGGTGTTAGTTAC 59.080 45.833 18.45 0.00 38.78 2.50
5372 5640 4.584325 ACTAGTGAACGGGTGTTAGTTACA 59.416 41.667 0.00 0.00 38.78 2.41
5373 5641 4.405116 AGTGAACGGGTGTTAGTTACAA 57.595 40.909 0.00 0.00 38.78 2.41
5374 5642 4.964593 AGTGAACGGGTGTTAGTTACAAT 58.035 39.130 0.00 0.00 38.78 2.71
5375 5643 6.100404 AGTGAACGGGTGTTAGTTACAATA 57.900 37.500 0.00 0.00 38.78 1.90
5376 5644 6.704310 AGTGAACGGGTGTTAGTTACAATAT 58.296 36.000 0.00 0.00 38.78 1.28
5377 5645 6.592607 AGTGAACGGGTGTTAGTTACAATATG 59.407 38.462 0.00 0.00 38.78 1.78
5378 5646 6.591062 GTGAACGGGTGTTAGTTACAATATGA 59.409 38.462 0.00 0.00 38.78 2.15
5379 5647 7.118101 GTGAACGGGTGTTAGTTACAATATGAA 59.882 37.037 0.00 0.00 38.78 2.57
5380 5648 7.825270 TGAACGGGTGTTAGTTACAATATGAAT 59.175 33.333 0.00 0.00 38.78 2.57
5381 5649 7.548196 ACGGGTGTTAGTTACAATATGAATG 57.452 36.000 0.00 0.00 38.80 2.67
5382 5650 6.540914 ACGGGTGTTAGTTACAATATGAATGG 59.459 38.462 0.00 0.00 38.80 3.16
5383 5651 6.764085 CGGGTGTTAGTTACAATATGAATGGA 59.236 38.462 0.00 0.00 38.80 3.41
5384 5652 7.042051 CGGGTGTTAGTTACAATATGAATGGAG 60.042 40.741 0.00 0.00 38.80 3.86
5385 5653 7.228706 GGGTGTTAGTTACAATATGAATGGAGG 59.771 40.741 0.00 0.00 38.80 4.30
5386 5654 7.773690 GGTGTTAGTTACAATATGAATGGAGGT 59.226 37.037 0.00 0.00 38.80 3.85
5387 5655 9.174166 GTGTTAGTTACAATATGAATGGAGGTT 57.826 33.333 0.00 0.00 38.80 3.50
5398 5666 9.672673 AATATGAATGGAGGTTATACATGTAGC 57.327 33.333 11.91 0.00 0.00 3.58
5399 5667 6.493189 TGAATGGAGGTTATACATGTAGCA 57.507 37.500 11.91 0.00 0.00 3.49
5400 5668 6.524734 TGAATGGAGGTTATACATGTAGCAG 58.475 40.000 11.91 0.00 0.00 4.24
5401 5669 4.336889 TGGAGGTTATACATGTAGCAGC 57.663 45.455 11.91 9.53 0.00 5.25
5402 5670 3.709141 TGGAGGTTATACATGTAGCAGCA 59.291 43.478 11.91 0.00 0.00 4.41
5403 5671 4.202253 TGGAGGTTATACATGTAGCAGCAG 60.202 45.833 11.91 0.00 0.00 4.24
5404 5672 3.733337 AGGTTATACATGTAGCAGCAGC 58.267 45.455 11.91 0.00 42.56 5.25
5405 5673 3.134623 AGGTTATACATGTAGCAGCAGCA 59.865 43.478 11.91 0.00 45.49 4.41
5406 5674 3.496130 GGTTATACATGTAGCAGCAGCAG 59.504 47.826 11.91 0.00 45.49 4.24
5407 5675 1.590932 ATACATGTAGCAGCAGCAGC 58.409 50.000 11.91 0.46 45.49 5.25
5408 5676 0.249955 TACATGTAGCAGCAGCAGCA 59.750 50.000 12.92 1.73 45.49 4.41
5409 5677 1.025113 ACATGTAGCAGCAGCAGCAG 61.025 55.000 12.92 0.00 45.49 4.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.136502 CGAGAGCTTTGCAACTTCGAC 60.137 52.381 0.00 0.00 0.00 4.20
2 3 1.139989 CGAGAGCTTTGCAACTTCGA 58.860 50.000 0.00 0.00 0.00 3.71
4 5 0.519077 CCCGAGAGCTTTGCAACTTC 59.481 55.000 0.00 0.00 0.00 3.01
5 6 0.890996 CCCCGAGAGCTTTGCAACTT 60.891 55.000 0.00 0.00 0.00 2.66
7 8 1.578206 GACCCCGAGAGCTTTGCAAC 61.578 60.000 0.00 0.00 0.00 4.17
8 9 1.302511 GACCCCGAGAGCTTTGCAA 60.303 57.895 0.00 0.00 0.00 4.08
9 10 2.347490 GACCCCGAGAGCTTTGCA 59.653 61.111 0.00 0.00 0.00 4.08
10 11 2.815647 CGACCCCGAGAGCTTTGC 60.816 66.667 0.00 0.00 38.22 3.68
11 12 2.815647 GCGACCCCGAGAGCTTTG 60.816 66.667 0.00 0.00 38.22 2.77
12 13 4.083862 GGCGACCCCGAGAGCTTT 62.084 66.667 0.00 0.00 38.22 3.51
17 18 4.689549 TTGGAGGCGACCCCGAGA 62.690 66.667 0.00 0.00 39.21 4.04
18 19 3.248446 TTTTGGAGGCGACCCCGAG 62.248 63.158 0.00 0.00 39.21 4.63
19 20 3.243053 TTTTGGAGGCGACCCCGA 61.243 61.111 0.00 0.00 39.21 5.14
20 21 3.053896 GTTTTGGAGGCGACCCCG 61.054 66.667 0.00 0.00 39.21 5.73
21 22 3.053896 CGTTTTGGAGGCGACCCC 61.054 66.667 0.00 0.00 0.00 4.95
22 23 2.281276 ACGTTTTGGAGGCGACCC 60.281 61.111 0.00 0.00 0.00 4.46
23 24 2.322830 GGACGTTTTGGAGGCGACC 61.323 63.158 0.00 0.00 34.05 4.79
24 25 1.595929 TGGACGTTTTGGAGGCGAC 60.596 57.895 0.00 0.00 0.00 5.19
25 26 1.595929 GTGGACGTTTTGGAGGCGA 60.596 57.895 0.00 0.00 0.00 5.54
26 27 1.597027 AGTGGACGTTTTGGAGGCG 60.597 57.895 0.00 0.00 0.00 5.52
27 28 1.949257 CAGTGGACGTTTTGGAGGC 59.051 57.895 0.00 0.00 0.00 4.70
28 29 0.535102 AGCAGTGGACGTTTTGGAGG 60.535 55.000 0.00 0.00 0.00 4.30
29 30 0.868406 GAGCAGTGGACGTTTTGGAG 59.132 55.000 0.00 0.00 0.00 3.86
30 31 0.534203 GGAGCAGTGGACGTTTTGGA 60.534 55.000 0.00 0.00 0.00 3.53
31 32 0.817634 TGGAGCAGTGGACGTTTTGG 60.818 55.000 0.00 0.00 0.00 3.28
32 33 1.021202 TTGGAGCAGTGGACGTTTTG 58.979 50.000 0.00 0.00 0.00 2.44
33 34 1.021968 GTTGGAGCAGTGGACGTTTT 58.978 50.000 0.00 0.00 0.00 2.43
34 35 0.107410 TGTTGGAGCAGTGGACGTTT 60.107 50.000 0.00 0.00 0.00 3.60
35 36 0.814010 GTGTTGGAGCAGTGGACGTT 60.814 55.000 0.00 0.00 0.00 3.99
36 37 1.227556 GTGTTGGAGCAGTGGACGT 60.228 57.895 0.00 0.00 0.00 4.34
37 38 2.310233 CGTGTTGGAGCAGTGGACG 61.310 63.158 0.00 0.00 0.00 4.79
38 39 2.607892 GCGTGTTGGAGCAGTGGAC 61.608 63.158 0.00 0.00 0.00 4.02
39 40 2.280797 GCGTGTTGGAGCAGTGGA 60.281 61.111 0.00 0.00 0.00 4.02
40 41 3.357079 GGCGTGTTGGAGCAGTGG 61.357 66.667 0.00 0.00 34.54 4.00
41 42 1.893808 AAGGCGTGTTGGAGCAGTG 60.894 57.895 0.00 0.00 34.54 3.66
42 43 1.893808 CAAGGCGTGTTGGAGCAGT 60.894 57.895 0.00 0.00 34.54 4.40
43 44 2.949106 CAAGGCGTGTTGGAGCAG 59.051 61.111 0.00 0.00 34.54 4.24
44 45 3.286751 GCAAGGCGTGTTGGAGCA 61.287 61.111 1.69 0.00 34.54 4.26
57 58 3.932580 TACCGGCTGAGTGCGCAAG 62.933 63.158 14.00 7.61 44.05 4.01
58 59 3.997397 TACCGGCTGAGTGCGCAA 61.997 61.111 14.00 0.00 44.05 4.85
59 60 4.735132 GTACCGGCTGAGTGCGCA 62.735 66.667 5.66 5.66 44.05 6.09
72 73 3.468140 GACCCCAGAGGCGGTACC 61.468 72.222 0.16 0.16 40.58 3.34
73 74 2.029307 GATGACCCCAGAGGCGGTAC 62.029 65.000 0.00 0.00 40.58 3.34
74 75 1.760875 GATGACCCCAGAGGCGGTA 60.761 63.158 0.00 0.00 40.58 4.02
75 76 3.083997 GATGACCCCAGAGGCGGT 61.084 66.667 0.00 0.00 40.58 5.68
76 77 4.227134 CGATGACCCCAGAGGCGG 62.227 72.222 0.00 0.00 40.58 6.13
77 78 4.899239 GCGATGACCCCAGAGGCG 62.899 72.222 0.00 0.00 40.58 5.52
78 79 4.554036 GGCGATGACCCCAGAGGC 62.554 72.222 0.00 0.00 40.58 4.70
79 80 3.866582 GGGCGATGACCCCAGAGG 61.867 72.222 0.00 0.00 45.00 3.69
86 87 1.300697 GTATGTCGGGGCGATGACC 60.301 63.158 0.00 0.00 38.42 4.02
87 88 1.300697 GGTATGTCGGGGCGATGAC 60.301 63.158 0.00 0.00 38.42 3.06
88 89 1.758906 TGGTATGTCGGGGCGATGA 60.759 57.895 0.00 0.00 38.42 2.92
89 90 1.594293 GTGGTATGTCGGGGCGATG 60.594 63.158 0.00 0.00 38.42 3.84
90 91 0.468585 TAGTGGTATGTCGGGGCGAT 60.469 55.000 0.00 0.00 38.42 4.58
91 92 1.076850 TAGTGGTATGTCGGGGCGA 60.077 57.895 0.00 0.00 0.00 5.54
92 93 1.066918 GTAGTGGTATGTCGGGGCG 59.933 63.158 0.00 0.00 0.00 6.13
93 94 0.104304 CTGTAGTGGTATGTCGGGGC 59.896 60.000 0.00 0.00 0.00 5.80
94 95 1.681793 CTCTGTAGTGGTATGTCGGGG 59.318 57.143 0.00 0.00 0.00 5.73
95 96 2.358267 GTCTCTGTAGTGGTATGTCGGG 59.642 54.545 0.00 0.00 0.00 5.14
96 97 2.031807 CGTCTCTGTAGTGGTATGTCGG 59.968 54.545 0.00 0.00 0.00 4.79
97 98 2.676839 ACGTCTCTGTAGTGGTATGTCG 59.323 50.000 0.00 0.00 0.00 4.35
98 99 3.731264 GCACGTCTCTGTAGTGGTATGTC 60.731 52.174 0.00 0.00 36.48 3.06
99 100 2.163815 GCACGTCTCTGTAGTGGTATGT 59.836 50.000 0.00 0.00 36.48 2.29
100 101 2.791503 CGCACGTCTCTGTAGTGGTATG 60.792 54.545 0.00 0.00 36.48 2.39
101 102 1.400846 CGCACGTCTCTGTAGTGGTAT 59.599 52.381 0.00 0.00 36.48 2.73
102 103 0.800631 CGCACGTCTCTGTAGTGGTA 59.199 55.000 0.00 0.00 36.48 3.25
103 104 1.170919 ACGCACGTCTCTGTAGTGGT 61.171 55.000 0.00 0.00 36.48 4.16
104 105 0.039437 AACGCACGTCTCTGTAGTGG 60.039 55.000 0.00 0.00 36.48 4.00
105 106 1.053048 CAACGCACGTCTCTGTAGTG 58.947 55.000 0.00 0.00 38.77 2.74
106 107 0.663568 GCAACGCACGTCTCTGTAGT 60.664 55.000 0.00 0.00 0.00 2.73
107 108 0.663269 TGCAACGCACGTCTCTGTAG 60.663 55.000 0.00 0.00 31.71 2.74
108 109 1.360911 TGCAACGCACGTCTCTGTA 59.639 52.632 0.00 0.00 31.71 2.74
109 110 2.106131 TGCAACGCACGTCTCTGT 59.894 55.556 0.00 0.00 31.71 3.41
124 125 1.061131 CACTAGTAAGCATGCACGTGC 59.939 52.381 33.11 33.11 45.38 5.34
125 126 1.061131 GCACTAGTAAGCATGCACGTG 59.939 52.381 21.98 12.28 38.00 4.49
126 127 1.066858 AGCACTAGTAAGCATGCACGT 60.067 47.619 21.98 7.14 40.63 4.49
127 128 1.325640 CAGCACTAGTAAGCATGCACG 59.674 52.381 21.98 3.52 40.63 5.34
128 129 1.667724 CCAGCACTAGTAAGCATGCAC 59.332 52.381 21.98 10.48 40.63 4.57
129 130 2.013563 GCCAGCACTAGTAAGCATGCA 61.014 52.381 21.98 0.00 40.63 3.96
130 131 0.659957 GCCAGCACTAGTAAGCATGC 59.340 55.000 10.51 10.51 38.39 4.06
131 132 2.028420 TGCCAGCACTAGTAAGCATG 57.972 50.000 7.83 0.00 0.00 4.06
132 133 2.787473 TTGCCAGCACTAGTAAGCAT 57.213 45.000 7.83 0.00 0.00 3.79
133 134 2.559698 TTTGCCAGCACTAGTAAGCA 57.440 45.000 7.83 6.16 0.00 3.91
134 135 2.814336 ACTTTTGCCAGCACTAGTAAGC 59.186 45.455 0.00 0.00 0.00 3.09
135 136 3.815401 ACACTTTTGCCAGCACTAGTAAG 59.185 43.478 0.00 0.00 0.00 2.34
136 137 3.815809 ACACTTTTGCCAGCACTAGTAA 58.184 40.909 0.00 0.00 0.00 2.24
137 138 3.485463 ACACTTTTGCCAGCACTAGTA 57.515 42.857 0.00 0.00 0.00 1.82
138 139 2.348411 ACACTTTTGCCAGCACTAGT 57.652 45.000 0.00 0.00 0.00 2.57
139 140 6.494893 TTATTACACTTTTGCCAGCACTAG 57.505 37.500 0.00 0.00 0.00 2.57
140 141 6.183360 CGATTATTACACTTTTGCCAGCACTA 60.183 38.462 0.00 0.00 0.00 2.74
141 142 5.391950 CGATTATTACACTTTTGCCAGCACT 60.392 40.000 0.00 0.00 0.00 4.40
142 143 4.793216 CGATTATTACACTTTTGCCAGCAC 59.207 41.667 0.00 0.00 0.00 4.40
143 144 4.142491 CCGATTATTACACTTTTGCCAGCA 60.142 41.667 0.00 0.00 0.00 4.41
144 145 4.142469 ACCGATTATTACACTTTTGCCAGC 60.142 41.667 0.00 0.00 0.00 4.85
145 146 5.123186 TGACCGATTATTACACTTTTGCCAG 59.877 40.000 0.00 0.00 0.00 4.85
146 147 5.004448 TGACCGATTATTACACTTTTGCCA 58.996 37.500 0.00 0.00 0.00 4.92
147 148 5.554822 TGACCGATTATTACACTTTTGCC 57.445 39.130 0.00 0.00 0.00 4.52
148 149 5.506832 CGTTGACCGATTATTACACTTTTGC 59.493 40.000 0.00 0.00 39.56 3.68
149 150 6.823531 TCGTTGACCGATTATTACACTTTTG 58.176 36.000 0.00 0.00 41.60 2.44
179 180 8.527810 AGATAAAATAAAATTCGTGCCCTCAAA 58.472 29.630 0.00 0.00 0.00 2.69
182 183 6.918022 CCAGATAAAATAAAATTCGTGCCCTC 59.082 38.462 0.00 0.00 0.00 4.30
183 184 6.183360 CCCAGATAAAATAAAATTCGTGCCCT 60.183 38.462 0.00 0.00 0.00 5.19
184 185 5.983118 CCCAGATAAAATAAAATTCGTGCCC 59.017 40.000 0.00 0.00 0.00 5.36
186 187 5.462068 GGCCCAGATAAAATAAAATTCGTGC 59.538 40.000 0.00 0.00 0.00 5.34
187 188 5.983118 GGGCCCAGATAAAATAAAATTCGTG 59.017 40.000 19.95 0.00 0.00 4.35
188 189 5.659079 TGGGCCCAGATAAAATAAAATTCGT 59.341 36.000 24.45 0.00 0.00 3.85
189 190 6.155475 TGGGCCCAGATAAAATAAAATTCG 57.845 37.500 24.45 0.00 0.00 3.34
190 191 7.161404 GGATGGGCCCAGATAAAATAAAATTC 58.839 38.462 31.97 16.77 0.00 2.17
191 192 6.239572 CGGATGGGCCCAGATAAAATAAAATT 60.240 38.462 31.97 7.68 0.00 1.82
204 205 2.965716 GAATGGACGGATGGGCCCAG 62.966 65.000 31.97 19.59 31.48 4.45
231 232 3.785887 AGAAAAGGATGGGCCACTACATA 59.214 43.478 9.28 0.00 40.02 2.29
234 241 2.644676 GAGAAAAGGATGGGCCACTAC 58.355 52.381 9.28 1.25 40.02 2.73
236 243 0.332972 GGAGAAAAGGATGGGCCACT 59.667 55.000 9.28 0.00 40.02 4.00
238 245 1.697297 GGGAGAAAAGGATGGGCCA 59.303 57.895 9.61 9.61 40.02 5.36
240 247 1.075970 GGGGGAGAAAAGGATGGGC 60.076 63.158 0.00 0.00 0.00 5.36
304 311 2.202987 GTGGAGATGCTGCGAGGG 60.203 66.667 0.00 0.00 0.00 4.30
306 313 2.202987 GGGTGGAGATGCTGCGAG 60.203 66.667 0.00 0.00 0.00 5.03
412 433 4.150454 CGCCCTCCCTCTCCCTCT 62.150 72.222 0.00 0.00 0.00 3.69
437 458 1.672854 TATTCGGGGTCGCTCCACTG 61.673 60.000 0.00 0.00 37.50 3.66
840 861 0.601311 GAGGCTAAATCGATGCGGCT 60.601 55.000 14.82 14.82 0.00 5.52
857 878 4.547367 GGGATTCGCGTGGGGGAG 62.547 72.222 5.77 0.00 36.39 4.30
862 883 4.547367 GGAGGGGGATTCGCGTGG 62.547 72.222 5.77 0.00 0.00 4.94
864 885 2.768344 ATGGAGGGGGATTCGCGT 60.768 61.111 5.77 0.00 0.00 6.01
865 886 2.031163 GATGGAGGGGGATTCGCG 59.969 66.667 0.00 0.00 0.00 5.87
866 887 2.432123 GGATGGAGGGGGATTCGC 59.568 66.667 0.00 0.00 0.00 4.70
867 888 1.770110 TGGGATGGAGGGGGATTCG 60.770 63.158 0.00 0.00 0.00 3.34
868 889 0.699231 ACTGGGATGGAGGGGGATTC 60.699 60.000 0.00 0.00 0.00 2.52
869 890 0.995675 CACTGGGATGGAGGGGGATT 60.996 60.000 0.00 0.00 0.00 3.01
870 891 1.386485 CACTGGGATGGAGGGGGAT 60.386 63.158 0.00 0.00 0.00 3.85
871 892 2.042762 CACTGGGATGGAGGGGGA 59.957 66.667 0.00 0.00 0.00 4.81
991 1032 2.240921 TCCCTGCAGGCATACATACAAA 59.759 45.455 28.39 0.00 34.51 2.83
1141 1190 1.115930 AGAACGGGGGATCCTCATCG 61.116 60.000 15.23 11.50 0.00 3.84
1160 1209 9.952030 TGAAGGTGAATATAACATAACAGAACA 57.048 29.630 0.00 0.00 0.00 3.18
1169 1218 7.716998 GTGAGATGGTGAAGGTGAATATAACAT 59.283 37.037 0.00 0.00 0.00 2.71
1174 1223 4.141390 GGGTGAGATGGTGAAGGTGAATAT 60.141 45.833 0.00 0.00 0.00 1.28
1176 1225 2.025887 GGGTGAGATGGTGAAGGTGAAT 60.026 50.000 0.00 0.00 0.00 2.57
1180 1229 1.208165 GGGGGTGAGATGGTGAAGGT 61.208 60.000 0.00 0.00 0.00 3.50
1181 1230 0.916358 AGGGGGTGAGATGGTGAAGG 60.916 60.000 0.00 0.00 0.00 3.46
1182 1231 0.543749 GAGGGGGTGAGATGGTGAAG 59.456 60.000 0.00 0.00 0.00 3.02
1234 1288 1.021920 GGACGAGCCTTCCTTCTTGC 61.022 60.000 0.00 0.00 0.00 4.01
1302 1356 6.183361 GGGGATATTATGATAAAGAGGCGGAT 60.183 42.308 0.00 0.00 0.00 4.18
1303 1357 5.130477 GGGGATATTATGATAAAGAGGCGGA 59.870 44.000 0.00 0.00 0.00 5.54
1304 1358 5.104527 TGGGGATATTATGATAAAGAGGCGG 60.105 44.000 0.00 0.00 0.00 6.13
1325 1379 2.093869 ACAGCAAGCAAGCATATTTGGG 60.094 45.455 3.19 0.00 36.85 4.12
1372 1426 1.919956 AAACGCGAGGTCGATCGACT 61.920 55.000 38.48 27.42 45.56 4.18
1500 1555 3.381272 GGACACACATGATTTGGGTATGG 59.619 47.826 0.00 0.00 41.13 2.74
1554 1609 1.093972 CAACAGGGCACATCGCATAA 58.906 50.000 0.00 0.00 45.17 1.90
1595 1651 9.159364 GCACATAATGAGCATATTCTCTGATAA 57.841 33.333 3.99 0.00 34.08 1.75
1698 1759 3.181497 GCGCCTGCAAGAGAATGATTTTA 60.181 43.478 0.00 0.00 42.15 1.52
1793 1854 3.866651 CACCAAGTTGACAGGGAGATAG 58.133 50.000 3.87 0.00 0.00 2.08
1841 1902 8.715088 AGGACAGTGTAACATAACGTTATTTTC 58.285 33.333 19.96 14.21 42.02 2.29
1849 1910 5.100259 CCTGTAGGACAGTGTAACATAACG 58.900 45.833 0.00 0.00 44.50 3.18
1949 2013 4.576053 TGGTGAACTTCAAACATCAGAGTG 59.424 41.667 0.00 0.00 0.00 3.51
1996 2060 3.485463 TCCATCCCTGTAAATTAGCGG 57.515 47.619 0.00 0.00 0.00 5.52
2099 2163 6.851330 CGAAGAAACTTACATGAACACTTTCC 59.149 38.462 0.00 0.00 0.00 3.13
2151 2215 1.801771 CTGGAAATGTCACGCGGTTTA 59.198 47.619 12.47 0.00 0.00 2.01
2156 2220 1.061131 GTCATCTGGAAATGTCACGCG 59.939 52.381 3.53 3.53 0.00 6.01
2244 2313 7.289317 ACCGACTGGGATGATTAATTACTTAGA 59.711 37.037 0.00 0.00 40.75 2.10
2435 2667 8.801299 TCATGTGGCATAAGAAAAACAGATAAA 58.199 29.630 0.00 0.00 0.00 1.40
2477 2709 1.857364 GTGCAGACACGTAAACCGG 59.143 57.895 0.00 0.00 42.24 5.28
2499 2731 9.532697 GCACAAAGTAGAATTATGCAAATTTTG 57.467 29.630 4.72 4.72 0.00 2.44
2508 2740 8.183536 TGCATACAAGCACAAAGTAGAATTATG 58.816 33.333 0.00 0.00 40.11 1.90
2537 2771 4.431416 TTGTGTGCCTTTTCCTCTTCTA 57.569 40.909 0.00 0.00 0.00 2.10
2660 2895 6.069331 AGCCTGATATCAGCAGAATGAAAAT 58.931 36.000 24.81 1.13 42.47 1.82
2779 3014 3.244044 ACAACAAATATGCGGGCAAGTTT 60.244 39.130 0.00 0.00 0.00 2.66
2807 3042 9.846248 CAGCATCTTTTAAAATACACTAAAGCT 57.154 29.630 0.09 0.00 0.00 3.74
2963 3205 3.935203 AGATACAAGCATGTACAGTGCAC 59.065 43.478 23.27 9.40 44.47 4.57
3156 3398 4.766404 ATTTCAGTCAAAAGGTTAGCGG 57.234 40.909 0.00 0.00 0.00 5.52
3182 3427 1.000843 TCCTCGTGTTGTGTGATCCTG 59.999 52.381 0.00 0.00 0.00 3.86
3324 3570 5.217393 CCATAGACGCATCATGAAAATTGG 58.783 41.667 0.00 0.00 0.00 3.16
3326 3572 4.338964 TGCCATAGACGCATCATGAAAATT 59.661 37.500 0.00 0.00 0.00 1.82
3396 3642 7.437862 GTGACCTGAAAAATGATTTTGCTTACA 59.562 33.333 9.84 3.21 38.83 2.41
3401 3647 5.333568 GCTGTGACCTGAAAAATGATTTTGC 60.334 40.000 3.62 2.55 38.83 3.68
3502 3749 6.818644 TCAGCCTGTGAAGATCAAAACTATAC 59.181 38.462 0.00 0.00 29.64 1.47
3636 3884 8.987890 GCCAAAATGTGTTGTAAAAAGATATGT 58.012 29.630 0.00 0.00 0.00 2.29
3637 3885 8.442384 GGCCAAAATGTGTTGTAAAAAGATATG 58.558 33.333 0.00 0.00 0.00 1.78
3659 3907 1.216064 AGATGCAATAGACCAGGCCA 58.784 50.000 5.01 0.00 0.00 5.36
3784 4032 5.700373 GCCCTAATGAACAAAATGCAAAGAA 59.300 36.000 0.00 0.00 0.00 2.52
3889 4138 1.066143 GGCTAGTACTTTCAGGCAGCA 60.066 52.381 11.71 0.00 35.11 4.41
3908 4157 9.770097 AATGCTATAGATATCCAATATTCACGG 57.230 33.333 3.21 0.00 0.00 4.94
3940 4189 6.431234 AGTTAGCAGACCAAAATTAGGTTCAG 59.569 38.462 4.19 0.29 40.09 3.02
4067 4318 9.965824 ACATCCACAAAGTACATTTTTCTTAAG 57.034 29.630 0.00 0.00 0.00 1.85
4137 4389 7.691993 AATAGATAGTCCAACCTACCATGTT 57.308 36.000 0.00 0.00 0.00 2.71
4267 4521 2.223688 CGGTTGATCACAGCCTAGAGAG 60.224 54.545 0.00 0.00 43.66 3.20
4358 4615 2.959707 ACTCGAAACAGGTCTCTTGAGT 59.040 45.455 0.00 0.00 0.00 3.41
4415 4672 2.125912 CGTTCGCCTGTCCCTCAG 60.126 66.667 0.00 0.00 43.27 3.35
4567 4828 3.438781 CGGCTGCCATGTTTTTCTACTAA 59.561 43.478 20.29 0.00 0.00 2.24
4596 4857 2.566724 CTGGCAAAGCAAATTCCCCTTA 59.433 45.455 0.00 0.00 0.00 2.69
4650 4911 1.455217 ACCACCCCTCGTATCTCCG 60.455 63.158 0.00 0.00 0.00 4.63
4665 4926 4.945543 GCATATCTTGCCATCATATCACCA 59.054 41.667 0.00 0.00 46.15 4.17
4684 4946 6.160684 ACAATGACAGTGTACTTAACGCATA 58.839 36.000 6.78 0.00 41.29 3.14
4706 4968 4.245845 TGCGAGTAAATGACAGTGTACA 57.754 40.909 0.00 0.00 0.00 2.90
4707 4969 4.032900 CCATGCGAGTAAATGACAGTGTAC 59.967 45.833 0.00 0.00 0.00 2.90
4708 4970 4.180817 CCATGCGAGTAAATGACAGTGTA 58.819 43.478 0.00 0.00 0.00 2.90
4709 4971 3.002791 CCATGCGAGTAAATGACAGTGT 58.997 45.455 0.00 0.00 0.00 3.55
4710 4972 3.002791 ACCATGCGAGTAAATGACAGTG 58.997 45.455 0.00 0.00 0.00 3.66
4711 4973 3.334583 ACCATGCGAGTAAATGACAGT 57.665 42.857 0.00 0.00 0.00 3.55
4712 4974 5.794687 TTAACCATGCGAGTAAATGACAG 57.205 39.130 0.00 0.00 0.00 3.51
4713 4975 6.751514 AATTAACCATGCGAGTAAATGACA 57.248 33.333 0.00 0.00 0.00 3.58
4714 4976 7.009174 CCAAAATTAACCATGCGAGTAAATGAC 59.991 37.037 0.00 0.00 0.00 3.06
4715 4977 7.032580 CCAAAATTAACCATGCGAGTAAATGA 58.967 34.615 0.00 0.00 0.00 2.57
4716 4978 6.811170 ACCAAAATTAACCATGCGAGTAAATG 59.189 34.615 0.00 0.00 0.00 2.32
4717 4979 6.811170 CACCAAAATTAACCATGCGAGTAAAT 59.189 34.615 0.00 0.00 0.00 1.40
4718 4980 6.016192 TCACCAAAATTAACCATGCGAGTAAA 60.016 34.615 0.00 0.00 0.00 2.01
4741 5003 5.509670 CCTCGTATACATCATCCTTGCTTCA 60.510 44.000 3.32 0.00 0.00 3.02
4818 5080 9.736023 GACTCAAACAAAATACTGTTTTCATCT 57.264 29.630 0.00 0.00 45.10 2.90
4831 5093 5.297547 TGACTCGCTAGACTCAAACAAAAT 58.702 37.500 0.00 0.00 0.00 1.82
4833 5095 4.316205 TGACTCGCTAGACTCAAACAAA 57.684 40.909 0.00 0.00 0.00 2.83
4839 5101 2.614520 GCTACATGACTCGCTAGACTCA 59.385 50.000 0.00 0.00 0.00 3.41
4861 5123 3.633418 CTTACTACAGTAGCAGTCCCCT 58.367 50.000 7.57 0.00 0.00 4.79
4917 5179 0.766674 ACCACCAGCCAACAGGACTA 60.767 55.000 0.00 0.00 0.00 2.59
4920 5182 1.932156 AACACCACCAGCCAACAGGA 61.932 55.000 0.00 0.00 0.00 3.86
4925 5187 1.827789 GAGCAACACCACCAGCCAA 60.828 57.895 0.00 0.00 0.00 4.52
4927 5189 0.955919 GTAGAGCAACACCACCAGCC 60.956 60.000 0.00 0.00 0.00 4.85
4995 5257 4.771590 ATCAGGTGCACAAAACATACTG 57.228 40.909 20.43 13.56 0.00 2.74
4998 5260 6.071447 AGCAATAATCAGGTGCACAAAACATA 60.071 34.615 20.43 4.64 40.83 2.29
5029 5297 6.993786 TTCTGAATTAACACACACAACAGA 57.006 33.333 0.00 0.00 0.00 3.41
5056 5324 6.421377 TCATCAAACGACCATGAATGTAAG 57.579 37.500 0.00 0.00 0.00 2.34
5067 5335 5.467063 AGAAAGAACTCTTCATCAAACGACC 59.533 40.000 0.00 0.00 34.61 4.79
5095 5363 7.281040 ACCGAACTAATTGATATCCGTAAGA 57.719 36.000 0.00 0.00 43.02 2.10
5099 5367 5.054477 CCAACCGAACTAATTGATATCCGT 58.946 41.667 0.00 0.00 0.00 4.69
5100 5368 5.054477 ACCAACCGAACTAATTGATATCCG 58.946 41.667 0.00 0.00 0.00 4.18
5111 5379 2.290464 CCACAACAACCAACCGAACTA 58.710 47.619 0.00 0.00 0.00 2.24
5172 5440 5.539582 TGTACTATGATCAACGGTTTTGC 57.460 39.130 0.00 0.00 0.00 3.68
5179 5447 4.502645 TGCACGAATGTACTATGATCAACG 59.497 41.667 0.00 0.00 0.00 4.10
5189 5457 2.076863 GGCTTCTTGCACGAATGTACT 58.923 47.619 6.04 0.00 45.15 2.73
5192 5460 1.160137 GAGGCTTCTTGCACGAATGT 58.840 50.000 6.04 0.00 45.15 2.71
5196 5464 1.768684 AAGGGAGGCTTCTTGCACGA 61.769 55.000 0.00 0.00 45.15 4.35
5198 5466 1.301677 CGAAGGGAGGCTTCTTGCAC 61.302 60.000 8.45 0.00 45.15 4.57
5213 5481 0.994995 CGACACAAGATGCTCCGAAG 59.005 55.000 0.00 0.00 0.00 3.79
5214 5482 0.389817 CCGACACAAGATGCTCCGAA 60.390 55.000 0.00 0.00 0.00 4.30
5215 5483 1.215382 CCGACACAAGATGCTCCGA 59.785 57.895 0.00 0.00 0.00 4.55
5216 5484 0.803768 CTCCGACACAAGATGCTCCG 60.804 60.000 0.00 0.00 0.00 4.63
5217 5485 0.247736 ACTCCGACACAAGATGCTCC 59.752 55.000 0.00 0.00 0.00 4.70
5218 5486 1.354040 CACTCCGACACAAGATGCTC 58.646 55.000 0.00 0.00 0.00 4.26
5281 5549 3.807622 TGTCCATCAAAGTCGAACACTTC 59.192 43.478 0.00 0.00 45.32 3.01
5285 5553 3.130633 CAGTGTCCATCAAAGTCGAACA 58.869 45.455 0.00 0.00 0.00 3.18
5307 5575 2.489938 TGGATGCACTAACACCTTCC 57.510 50.000 0.00 0.00 0.00 3.46
5331 5599 5.998363 CACTAGTGCTACCTTCCTTTTTCTT 59.002 40.000 10.54 0.00 0.00 2.52
5332 5600 5.307196 TCACTAGTGCTACCTTCCTTTTTCT 59.693 40.000 18.45 0.00 0.00 2.52
5333 5601 5.548406 TCACTAGTGCTACCTTCCTTTTTC 58.452 41.667 18.45 0.00 0.00 2.29
5334 5602 5.562298 TCACTAGTGCTACCTTCCTTTTT 57.438 39.130 18.45 0.00 0.00 1.94
5335 5603 5.306394 GTTCACTAGTGCTACCTTCCTTTT 58.694 41.667 18.45 0.00 0.00 2.27
5336 5604 4.560919 CGTTCACTAGTGCTACCTTCCTTT 60.561 45.833 18.45 0.00 0.00 3.11
5337 5605 3.056749 CGTTCACTAGTGCTACCTTCCTT 60.057 47.826 18.45 0.00 0.00 3.36
5338 5606 2.492484 CGTTCACTAGTGCTACCTTCCT 59.508 50.000 18.45 0.00 0.00 3.36
5339 5607 2.416972 CCGTTCACTAGTGCTACCTTCC 60.417 54.545 18.45 0.00 0.00 3.46
5340 5608 2.416972 CCCGTTCACTAGTGCTACCTTC 60.417 54.545 18.45 2.60 0.00 3.46
5341 5609 1.549170 CCCGTTCACTAGTGCTACCTT 59.451 52.381 18.45 0.00 0.00 3.50
5342 5610 1.183549 CCCGTTCACTAGTGCTACCT 58.816 55.000 18.45 0.00 0.00 3.08
5343 5611 0.893447 ACCCGTTCACTAGTGCTACC 59.107 55.000 18.45 4.65 0.00 3.18
5344 5612 1.271656 ACACCCGTTCACTAGTGCTAC 59.728 52.381 18.45 16.07 33.46 3.58
5345 5613 1.624336 ACACCCGTTCACTAGTGCTA 58.376 50.000 18.45 5.73 33.46 3.49
5346 5614 0.756903 AACACCCGTTCACTAGTGCT 59.243 50.000 18.45 0.00 33.46 4.40
5347 5615 2.288640 ACTAACACCCGTTCACTAGTGC 60.289 50.000 18.45 4.21 36.52 4.40
5348 5616 3.655276 ACTAACACCCGTTCACTAGTG 57.345 47.619 17.17 17.17 36.52 2.74
5349 5617 4.584325 TGTAACTAACACCCGTTCACTAGT 59.416 41.667 0.00 0.00 36.52 2.57
5350 5618 5.125100 TGTAACTAACACCCGTTCACTAG 57.875 43.478 0.00 0.00 36.52 2.57
5351 5619 5.528043 TTGTAACTAACACCCGTTCACTA 57.472 39.130 0.00 0.00 38.00 2.74
5352 5620 4.405116 TTGTAACTAACACCCGTTCACT 57.595 40.909 0.00 0.00 38.00 3.41
5353 5621 6.591062 TCATATTGTAACTAACACCCGTTCAC 59.409 38.462 0.00 0.00 38.00 3.18
5354 5622 6.699366 TCATATTGTAACTAACACCCGTTCA 58.301 36.000 0.00 0.00 38.00 3.18
5355 5623 7.599630 TTCATATTGTAACTAACACCCGTTC 57.400 36.000 0.00 0.00 38.00 3.95
5356 5624 7.066525 CCATTCATATTGTAACTAACACCCGTT 59.933 37.037 0.00 0.00 38.00 4.44
5357 5625 6.540914 CCATTCATATTGTAACTAACACCCGT 59.459 38.462 0.00 0.00 38.00 5.28
5358 5626 6.764085 TCCATTCATATTGTAACTAACACCCG 59.236 38.462 0.00 0.00 38.00 5.28
5359 5627 7.228706 CCTCCATTCATATTGTAACTAACACCC 59.771 40.741 0.00 0.00 38.00 4.61
5360 5628 7.773690 ACCTCCATTCATATTGTAACTAACACC 59.226 37.037 0.00 0.00 38.00 4.16
5361 5629 8.732746 ACCTCCATTCATATTGTAACTAACAC 57.267 34.615 0.00 0.00 38.00 3.32
5372 5640 9.672673 GCTACATGTATAACCTCCATTCATATT 57.327 33.333 5.91 0.00 0.00 1.28
5373 5641 8.825774 TGCTACATGTATAACCTCCATTCATAT 58.174 33.333 5.91 0.00 0.00 1.78
5374 5642 8.201242 TGCTACATGTATAACCTCCATTCATA 57.799 34.615 5.91 0.00 0.00 2.15
5375 5643 7.078249 TGCTACATGTATAACCTCCATTCAT 57.922 36.000 5.91 0.00 0.00 2.57
5376 5644 6.493189 TGCTACATGTATAACCTCCATTCA 57.507 37.500 5.91 0.00 0.00 2.57
5377 5645 5.409826 GCTGCTACATGTATAACCTCCATTC 59.590 44.000 5.91 0.00 0.00 2.67
5378 5646 5.163205 TGCTGCTACATGTATAACCTCCATT 60.163 40.000 5.91 0.00 0.00 3.16
5379 5647 4.347876 TGCTGCTACATGTATAACCTCCAT 59.652 41.667 5.91 0.00 0.00 3.41
5380 5648 3.709141 TGCTGCTACATGTATAACCTCCA 59.291 43.478 5.91 0.00 0.00 3.86
5381 5649 4.310769 CTGCTGCTACATGTATAACCTCC 58.689 47.826 5.91 0.00 0.00 4.30
5382 5650 3.743396 GCTGCTGCTACATGTATAACCTC 59.257 47.826 5.91 0.00 36.03 3.85
5383 5651 3.134623 TGCTGCTGCTACATGTATAACCT 59.865 43.478 17.00 0.00 40.48 3.50
5384 5652 3.466836 TGCTGCTGCTACATGTATAACC 58.533 45.455 17.00 0.00 40.48 2.85
5385 5653 3.059325 GCTGCTGCTGCTACATGTATAAC 60.059 47.826 22.10 0.01 40.48 1.89
5386 5654 3.133691 GCTGCTGCTGCTACATGTATAA 58.866 45.455 22.10 0.00 40.48 0.98
5387 5655 2.102925 TGCTGCTGCTGCTACATGTATA 59.897 45.455 27.67 5.79 40.48 1.47
5388 5656 1.134310 TGCTGCTGCTGCTACATGTAT 60.134 47.619 27.67 0.00 40.48 2.29
5389 5657 0.249955 TGCTGCTGCTGCTACATGTA 59.750 50.000 27.67 5.25 40.48 2.29
5390 5658 1.002990 TGCTGCTGCTGCTACATGT 60.003 52.632 27.67 2.69 40.48 3.21
5391 5659 1.722082 CTGCTGCTGCTGCTACATG 59.278 57.895 27.67 11.95 40.48 3.21
5392 5660 4.220413 CTGCTGCTGCTGCTACAT 57.780 55.556 27.67 0.00 40.48 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.