Multiple sequence alignment - TraesCS3A01G085400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G085400 chr3A 100.000 6229 0 0 1 6229 55040862 55034634 0.000000e+00 11503.0
1 TraesCS3A01G085400 chr3A 79.770 870 124 29 5405 6229 509543769 509542907 9.000000e-163 584.0
2 TraesCS3A01G085400 chr3D 94.456 3265 133 25 2985 6229 43012905 43009669 0.000000e+00 4983.0
3 TraesCS3A01G085400 chr3D 91.254 2481 138 31 543 2989 43015381 43012946 0.000000e+00 3306.0
4 TraesCS3A01G085400 chr3D 84.601 539 76 3 5423 5954 388448873 388448335 4.280000e-146 529.0
5 TraesCS3A01G085400 chr3D 87.719 171 15 4 6062 6229 388448192 388448025 1.770000e-45 195.0
6 TraesCS3A01G085400 chr3B 93.674 3272 128 24 2999 6229 66879959 66876726 0.000000e+00 4822.0
7 TraesCS3A01G085400 chr3B 84.705 1883 125 73 368 2216 66882568 66880815 0.000000e+00 1731.0
8 TraesCS3A01G085400 chr3B 93.846 780 41 5 2214 2989 66880788 66880012 0.000000e+00 1168.0
9 TraesCS3A01G085400 chr3B 79.636 879 131 24 5394 6229 505268524 505267651 6.960000e-164 588.0
10 TraesCS3A01G085400 chr5A 78.293 668 95 31 3593 4255 622418809 622419431 9.800000e-103 385.0
11 TraesCS3A01G085400 chrUn 77.712 673 94 31 3598 4255 410721799 410722430 1.650000e-95 361.0
12 TraesCS3A01G085400 chrUn 95.349 43 2 0 301 343 41012940 41012898 1.120000e-07 69.4
13 TraesCS3A01G085400 chr2D 77.712 673 93 32 3598 4255 44536921 44536291 5.940000e-95 359.0
14 TraesCS3A01G085400 chr2D 90.698 43 4 0 301 343 610402153 610402111 2.430000e-04 58.4
15 TraesCS3A01G085400 chr2A 79.208 505 59 16 3734 4225 48441434 48440963 6.060000e-80 309.0
16 TraesCS3A01G085400 chr1D 85.455 165 18 2 6068 6229 316010360 316010199 3.860000e-37 167.0
17 TraesCS3A01G085400 chr1B 84.242 165 20 2 6068 6229 428109125 428108964 8.360000e-34 156.0
18 TraesCS3A01G085400 chr2B 83.333 72 9 3 301 369 770099762 770099833 5.210000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G085400 chr3A 55034634 55040862 6228 True 11503.000000 11503 100.000000 1 6229 1 chr3A.!!$R1 6228
1 TraesCS3A01G085400 chr3A 509542907 509543769 862 True 584.000000 584 79.770000 5405 6229 1 chr3A.!!$R2 824
2 TraesCS3A01G085400 chr3D 43009669 43015381 5712 True 4144.500000 4983 92.855000 543 6229 2 chr3D.!!$R1 5686
3 TraesCS3A01G085400 chr3D 388448025 388448873 848 True 362.000000 529 86.160000 5423 6229 2 chr3D.!!$R2 806
4 TraesCS3A01G085400 chr3B 66876726 66882568 5842 True 2573.666667 4822 90.741667 368 6229 3 chr3B.!!$R2 5861
5 TraesCS3A01G085400 chr3B 505267651 505268524 873 True 588.000000 588 79.636000 5394 6229 1 chr3B.!!$R1 835
6 TraesCS3A01G085400 chr5A 622418809 622419431 622 False 385.000000 385 78.293000 3593 4255 1 chr5A.!!$F1 662
7 TraesCS3A01G085400 chrUn 410721799 410722430 631 False 361.000000 361 77.712000 3598 4255 1 chrUn.!!$F1 657
8 TraesCS3A01G085400 chr2D 44536291 44536921 630 True 359.000000 359 77.712000 3598 4255 1 chr2D.!!$R1 657

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
216 217 0.030101 CACGCGGTTTGTGGTTGATT 59.970 50.000 12.47 0.00 33.69 2.57 F
258 259 0.038159 GACTCCGGTGTCACCTTCTG 60.038 60.000 27.42 9.48 35.66 3.02 F
484 491 0.110486 AAAACAGAGCACCCATCCGT 59.890 50.000 0.00 0.00 0.00 4.69 F
509 516 0.179936 GATGGAAGAGTGGGAGCCAG 59.820 60.000 0.00 0.00 32.34 4.85 F
1251 1301 0.532862 ATCCTATTCAACGCTGCCCG 60.533 55.000 0.00 0.00 44.21 6.13 F
1304 1355 0.600557 ATCTAATCTGCTCCGCTCCG 59.399 55.000 0.00 0.00 0.00 4.63 F
1611 1662 1.065199 ACATCCATCCACGCTGACATT 60.065 47.619 0.00 0.00 0.00 2.71 F
1780 1845 1.150081 GGATGTGAGATGGCAGGGG 59.850 63.158 0.00 0.00 0.00 4.79 F
2387 2483 1.334384 TTGCAGTGCGGATAGGCCTA 61.334 55.000 16.60 16.60 0.00 3.93 F
3044 3189 1.379044 GGTTGGATCTGCACCAGGG 60.379 63.158 0.00 0.00 38.70 4.45 F
3557 3708 1.990563 GGTGTTACGTCCATCTCAACG 59.009 52.381 0.00 0.00 44.22 4.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1802 1867 0.037326 ATCGTGTCGTTGAGGTGCAT 60.037 50.000 0.00 0.00 0.00 3.96 R
1885 1950 3.127548 AGGCACGCTTATTTGACATGAAG 59.872 43.478 0.00 0.00 0.00 3.02 R
2376 2472 0.677098 TAGAGCGCTAGGCCTATCCG 60.677 60.000 22.03 22.03 45.17 4.18 R
2378 2474 2.619646 GGTATAGAGCGCTAGGCCTATC 59.380 54.545 14.30 8.46 45.17 2.08 R
3089 3238 0.586319 GCAACAGCGCAAGAAGTACA 59.414 50.000 11.47 0.00 43.02 2.90 R
3328 3477 7.144722 TCTTCAAAGTTGGCACATGTATTAG 57.855 36.000 0.00 0.00 39.30 1.73 R
3581 3732 1.493022 ACAGTACTGGTGCCTTTTGGA 59.507 47.619 26.12 0.00 36.92 3.53 R
3695 3849 0.039617 CGGCGCCAATCACAAAAGAA 60.040 50.000 28.98 0.00 0.00 2.52 R
3796 3958 6.173339 TGAGTAAATGTTGAAGTCAGGATCC 58.827 40.000 2.48 2.48 0.00 3.36 R
4940 5118 2.564771 TGTGCAGACTGAAGAACCAAG 58.435 47.619 6.65 0.00 0.00 3.61 R
5508 5723 0.884704 GCTGGAAGAAGTTGTCCGCA 60.885 55.000 11.09 0.00 36.65 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 8.694975 AGATGAATAATATGTGAGATGTACGC 57.305 34.615 0.00 0.00 0.00 4.42
30 31 7.761704 AGATGAATAATATGTGAGATGTACGCC 59.238 37.037 0.00 0.00 0.00 5.68
31 32 6.754193 TGAATAATATGTGAGATGTACGCCA 58.246 36.000 0.00 0.00 0.00 5.69
32 33 7.386059 TGAATAATATGTGAGATGTACGCCAT 58.614 34.615 0.00 0.00 36.13 4.40
33 34 8.527810 TGAATAATATGTGAGATGTACGCCATA 58.472 33.333 0.00 0.00 32.56 2.74
34 35 9.366216 GAATAATATGTGAGATGTACGCCATAA 57.634 33.333 0.00 0.00 32.56 1.90
35 36 9.719355 AATAATATGTGAGATGTACGCCATAAA 57.281 29.630 0.00 0.00 32.56 1.40
36 37 9.719355 ATAATATGTGAGATGTACGCCATAAAA 57.281 29.630 0.00 0.00 32.56 1.52
37 38 8.445275 AATATGTGAGATGTACGCCATAAAAA 57.555 30.769 0.00 0.00 32.56 1.94
38 39 5.539582 TGTGAGATGTACGCCATAAAAAC 57.460 39.130 0.00 0.00 32.56 2.43
39 40 4.393680 TGTGAGATGTACGCCATAAAAACC 59.606 41.667 0.00 0.00 32.56 3.27
40 41 3.619483 TGAGATGTACGCCATAAAAACCG 59.381 43.478 0.00 0.00 32.56 4.44
41 42 3.602483 AGATGTACGCCATAAAAACCGT 58.398 40.909 0.00 0.00 37.68 4.83
42 43 4.757594 AGATGTACGCCATAAAAACCGTA 58.242 39.130 0.00 0.00 35.36 4.02
47 48 3.261580 ACGCCATAAAAACCGTACTACC 58.738 45.455 0.00 0.00 31.43 3.18
48 49 3.055891 ACGCCATAAAAACCGTACTACCT 60.056 43.478 0.00 0.00 31.43 3.08
49 50 3.934579 CGCCATAAAAACCGTACTACCTT 59.065 43.478 0.00 0.00 0.00 3.50
50 51 4.033243 CGCCATAAAAACCGTACTACCTTC 59.967 45.833 0.00 0.00 0.00 3.46
51 52 4.033243 GCCATAAAAACCGTACTACCTTCG 59.967 45.833 0.00 0.00 0.00 3.79
53 54 5.410067 CATAAAAACCGTACTACCTTCGGA 58.590 41.667 9.75 0.00 46.05 4.55
54 55 4.335400 AAAAACCGTACTACCTTCGGAA 57.665 40.909 9.75 0.00 46.05 4.30
55 56 4.335400 AAAACCGTACTACCTTCGGAAA 57.665 40.909 9.75 0.00 46.05 3.13
56 57 3.303881 AACCGTACTACCTTCGGAAAC 57.696 47.619 9.75 0.00 46.05 2.78
57 58 2.519013 ACCGTACTACCTTCGGAAACT 58.481 47.619 9.75 0.00 46.05 2.66
58 59 2.489722 ACCGTACTACCTTCGGAAACTC 59.510 50.000 9.75 0.00 46.05 3.01
59 60 2.159324 CCGTACTACCTTCGGAAACTCC 60.159 54.545 0.00 0.00 46.05 3.85
60 61 2.751806 CGTACTACCTTCGGAAACTCCT 59.248 50.000 0.00 0.00 33.30 3.69
61 62 3.192212 CGTACTACCTTCGGAAACTCCTT 59.808 47.826 0.00 0.00 33.30 3.36
62 63 4.321527 CGTACTACCTTCGGAAACTCCTTT 60.322 45.833 0.00 0.00 33.30 3.11
63 64 4.268797 ACTACCTTCGGAAACTCCTTTC 57.731 45.455 0.00 0.00 35.86 2.62
64 65 3.644738 ACTACCTTCGGAAACTCCTTTCA 59.355 43.478 0.00 0.00 38.04 2.69
65 66 2.847441 ACCTTCGGAAACTCCTTTCAC 58.153 47.619 0.00 0.00 38.04 3.18
66 67 2.152016 CCTTCGGAAACTCCTTTCACC 58.848 52.381 0.00 0.00 38.04 4.02
67 68 2.486548 CCTTCGGAAACTCCTTTCACCA 60.487 50.000 0.00 0.00 38.04 4.17
68 69 2.249844 TCGGAAACTCCTTTCACCAC 57.750 50.000 0.00 0.00 38.04 4.16
69 70 1.487142 TCGGAAACTCCTTTCACCACA 59.513 47.619 0.00 0.00 38.04 4.17
70 71 2.092861 TCGGAAACTCCTTTCACCACAA 60.093 45.455 0.00 0.00 38.04 3.33
71 72 2.032924 CGGAAACTCCTTTCACCACAAC 59.967 50.000 0.00 0.00 38.04 3.32
72 73 3.020984 GGAAACTCCTTTCACCACAACA 58.979 45.455 0.00 0.00 38.04 3.33
73 74 3.181490 GGAAACTCCTTTCACCACAACAC 60.181 47.826 0.00 0.00 38.04 3.32
74 75 2.799126 ACTCCTTTCACCACAACACA 57.201 45.000 0.00 0.00 0.00 3.72
75 76 2.365582 ACTCCTTTCACCACAACACAC 58.634 47.619 0.00 0.00 0.00 3.82
76 77 2.290641 ACTCCTTTCACCACAACACACA 60.291 45.455 0.00 0.00 0.00 3.72
77 78 2.088423 TCCTTTCACCACAACACACAC 58.912 47.619 0.00 0.00 0.00 3.82
78 79 1.815613 CCTTTCACCACAACACACACA 59.184 47.619 0.00 0.00 0.00 3.72
79 80 2.415357 CCTTTCACCACAACACACACAC 60.415 50.000 0.00 0.00 0.00 3.82
80 81 1.897560 TTCACCACAACACACACACA 58.102 45.000 0.00 0.00 0.00 3.72
81 82 1.160989 TCACCACAACACACACACAC 58.839 50.000 0.00 0.00 0.00 3.82
82 83 0.877743 CACCACAACACACACACACA 59.122 50.000 0.00 0.00 0.00 3.72
83 84 0.878416 ACCACAACACACACACACAC 59.122 50.000 0.00 0.00 0.00 3.82
84 85 0.877743 CCACAACACACACACACACA 59.122 50.000 0.00 0.00 0.00 3.72
85 86 1.400888 CCACAACACACACACACACAC 60.401 52.381 0.00 0.00 0.00 3.82
86 87 1.265365 CACAACACACACACACACACA 59.735 47.619 0.00 0.00 0.00 3.72
87 88 2.095314 CACAACACACACACACACACAT 60.095 45.455 0.00 0.00 0.00 3.21
88 89 2.556189 ACAACACACACACACACACATT 59.444 40.909 0.00 0.00 0.00 2.71
89 90 3.753797 ACAACACACACACACACACATTA 59.246 39.130 0.00 0.00 0.00 1.90
90 91 4.397730 ACAACACACACACACACACATTAT 59.602 37.500 0.00 0.00 0.00 1.28
91 92 5.586643 ACAACACACACACACACACATTATA 59.413 36.000 0.00 0.00 0.00 0.98
92 93 6.262049 ACAACACACACACACACACATTATAT 59.738 34.615 0.00 0.00 0.00 0.86
93 94 7.442666 ACAACACACACACACACACATTATATA 59.557 33.333 0.00 0.00 0.00 0.86
94 95 8.450180 CAACACACACACACACACATTATATAT 58.550 33.333 0.00 0.00 0.00 0.86
95 96 9.660180 AACACACACACACACACATTATATATA 57.340 29.630 0.00 0.00 0.00 0.86
96 97 9.830975 ACACACACACACACACATTATATATAT 57.169 29.630 0.00 0.00 0.00 0.86
121 122 5.721232 CTTGGTCTAAGTATCGGTCAAAGT 58.279 41.667 0.00 0.00 0.00 2.66
122 123 6.839124 TTGGTCTAAGTATCGGTCAAAGTA 57.161 37.500 0.00 0.00 0.00 2.24
123 124 6.839124 TGGTCTAAGTATCGGTCAAAGTAA 57.161 37.500 0.00 0.00 0.00 2.24
124 125 7.230849 TGGTCTAAGTATCGGTCAAAGTAAA 57.769 36.000 0.00 0.00 0.00 2.01
125 126 7.844009 TGGTCTAAGTATCGGTCAAAGTAAAT 58.156 34.615 0.00 0.00 0.00 1.40
126 127 7.762615 TGGTCTAAGTATCGGTCAAAGTAAATG 59.237 37.037 0.00 0.00 0.00 2.32
127 128 7.763071 GGTCTAAGTATCGGTCAAAGTAAATGT 59.237 37.037 0.00 0.00 0.00 2.71
128 129 8.805688 GTCTAAGTATCGGTCAAAGTAAATGTC 58.194 37.037 0.00 0.00 0.00 3.06
129 130 8.525316 TCTAAGTATCGGTCAAAGTAAATGTCA 58.475 33.333 0.00 0.00 0.00 3.58
130 131 7.596749 AAGTATCGGTCAAAGTAAATGTCAG 57.403 36.000 0.00 0.00 0.00 3.51
131 132 6.931838 AGTATCGGTCAAAGTAAATGTCAGA 58.068 36.000 0.00 0.00 0.00 3.27
132 133 7.036220 AGTATCGGTCAAAGTAAATGTCAGAG 58.964 38.462 0.00 0.00 0.00 3.35
133 134 5.209818 TCGGTCAAAGTAAATGTCAGAGT 57.790 39.130 0.00 0.00 0.00 3.24
134 135 6.335471 TCGGTCAAAGTAAATGTCAGAGTA 57.665 37.500 0.00 0.00 0.00 2.59
135 136 6.931838 TCGGTCAAAGTAAATGTCAGAGTAT 58.068 36.000 0.00 0.00 0.00 2.12
136 137 6.811665 TCGGTCAAAGTAAATGTCAGAGTATG 59.188 38.462 0.00 0.00 0.00 2.39
137 138 6.590292 CGGTCAAAGTAAATGTCAGAGTATGT 59.410 38.462 0.00 0.00 0.00 2.29
138 139 7.758076 CGGTCAAAGTAAATGTCAGAGTATGTA 59.242 37.037 0.00 0.00 0.00 2.29
139 140 9.601217 GGTCAAAGTAAATGTCAGAGTATGTAT 57.399 33.333 0.00 0.00 0.00 2.29
168 169 7.425224 AGACCTTATATATTCCGATGAAGGG 57.575 40.000 11.23 0.00 36.99 3.95
169 170 7.189794 AGACCTTATATATTCCGATGAAGGGA 58.810 38.462 11.23 0.00 36.99 4.20
170 171 7.343316 AGACCTTATATATTCCGATGAAGGGAG 59.657 40.741 11.23 0.00 36.99 4.30
171 172 6.127026 ACCTTATATATTCCGATGAAGGGAGC 60.127 42.308 11.23 0.00 36.99 4.70
172 173 6.127054 CCTTATATATTCCGATGAAGGGAGCA 60.127 42.308 0.00 0.00 34.45 4.26
173 174 3.692257 ATATTCCGATGAAGGGAGCAG 57.308 47.619 0.00 0.00 34.45 4.24
174 175 0.471617 ATTCCGATGAAGGGAGCAGG 59.528 55.000 0.00 0.00 34.45 4.85
175 176 0.617535 TTCCGATGAAGGGAGCAGGA 60.618 55.000 0.00 0.00 34.45 3.86
176 177 1.045350 TCCGATGAAGGGAGCAGGAG 61.045 60.000 0.00 0.00 0.00 3.69
177 178 1.445095 CGATGAAGGGAGCAGGAGG 59.555 63.158 0.00 0.00 0.00 4.30
178 179 1.333636 CGATGAAGGGAGCAGGAGGT 61.334 60.000 0.00 0.00 0.00 3.85
179 180 0.915364 GATGAAGGGAGCAGGAGGTT 59.085 55.000 0.00 0.00 0.00 3.50
180 181 1.283321 GATGAAGGGAGCAGGAGGTTT 59.717 52.381 0.00 0.00 0.00 3.27
181 182 0.401738 TGAAGGGAGCAGGAGGTTTG 59.598 55.000 0.00 0.00 0.00 2.93
182 183 0.402121 GAAGGGAGCAGGAGGTTTGT 59.598 55.000 0.00 0.00 0.00 2.83
183 184 0.111253 AAGGGAGCAGGAGGTTTGTG 59.889 55.000 0.00 0.00 0.00 3.33
184 185 0.768221 AGGGAGCAGGAGGTTTGTGA 60.768 55.000 0.00 0.00 0.00 3.58
185 186 0.606673 GGGAGCAGGAGGTTTGTGAC 60.607 60.000 0.00 0.00 0.00 3.67
196 197 3.644966 GGTTTGTGACCCTGGATATCA 57.355 47.619 4.83 0.00 43.06 2.15
197 198 3.279434 GGTTTGTGACCCTGGATATCAC 58.721 50.000 14.92 14.92 43.06 3.06
200 201 1.480545 TGTGACCCTGGATATCACACG 59.519 52.381 18.53 0.00 45.89 4.49
201 202 0.464036 TGACCCTGGATATCACACGC 59.536 55.000 4.83 0.00 0.00 5.34
202 203 0.597637 GACCCTGGATATCACACGCG 60.598 60.000 3.53 3.53 0.00 6.01
203 204 1.300931 CCCTGGATATCACACGCGG 60.301 63.158 12.47 1.27 0.00 6.46
204 205 1.441729 CCTGGATATCACACGCGGT 59.558 57.895 12.47 2.05 0.00 5.68
205 206 0.179084 CCTGGATATCACACGCGGTT 60.179 55.000 12.47 0.00 0.00 4.44
206 207 1.651987 CTGGATATCACACGCGGTTT 58.348 50.000 12.47 0.00 0.00 3.27
207 208 1.327460 CTGGATATCACACGCGGTTTG 59.673 52.381 12.47 1.47 0.00 2.93
208 209 1.338294 TGGATATCACACGCGGTTTGT 60.338 47.619 12.47 2.27 0.00 2.83
209 210 1.062002 GGATATCACACGCGGTTTGTG 59.938 52.381 19.07 19.07 44.89 3.33
210 211 1.062002 GATATCACACGCGGTTTGTGG 59.938 52.381 23.06 9.12 43.88 4.17
211 212 0.249953 TATCACACGCGGTTTGTGGT 60.250 50.000 23.06 20.07 43.88 4.16
212 213 1.098712 ATCACACGCGGTTTGTGGTT 61.099 50.000 23.06 11.84 43.88 3.67
213 214 1.585002 CACACGCGGTTTGTGGTTG 60.585 57.895 17.78 3.48 40.66 3.77
214 215 1.745864 ACACGCGGTTTGTGGTTGA 60.746 52.632 12.47 0.00 41.64 3.18
215 216 1.098712 ACACGCGGTTTGTGGTTGAT 61.099 50.000 12.47 0.00 41.64 2.57
216 217 0.030101 CACGCGGTTTGTGGTTGATT 59.970 50.000 12.47 0.00 33.69 2.57
217 218 0.741915 ACGCGGTTTGTGGTTGATTT 59.258 45.000 12.47 0.00 0.00 2.17
218 219 1.948145 ACGCGGTTTGTGGTTGATTTA 59.052 42.857 12.47 0.00 0.00 1.40
219 220 2.031508 ACGCGGTTTGTGGTTGATTTAG 60.032 45.455 12.47 0.00 0.00 1.85
220 221 2.031508 CGCGGTTTGTGGTTGATTTAGT 60.032 45.455 0.00 0.00 0.00 2.24
221 222 3.305110 GCGGTTTGTGGTTGATTTAGTG 58.695 45.455 0.00 0.00 0.00 2.74
222 223 3.243267 GCGGTTTGTGGTTGATTTAGTGT 60.243 43.478 0.00 0.00 0.00 3.55
223 224 4.023878 GCGGTTTGTGGTTGATTTAGTGTA 60.024 41.667 0.00 0.00 0.00 2.90
224 225 5.505985 GCGGTTTGTGGTTGATTTAGTGTAA 60.506 40.000 0.00 0.00 0.00 2.41
225 226 6.496571 CGGTTTGTGGTTGATTTAGTGTAAA 58.503 36.000 0.00 0.00 0.00 2.01
226 227 6.973474 CGGTTTGTGGTTGATTTAGTGTAAAA 59.027 34.615 0.00 0.00 0.00 1.52
227 228 7.488471 CGGTTTGTGGTTGATTTAGTGTAAAAA 59.512 33.333 0.00 0.00 0.00 1.94
228 229 9.320352 GGTTTGTGGTTGATTTAGTGTAAAAAT 57.680 29.630 0.00 0.00 0.00 1.82
234 235 9.703892 TGGTTGATTTAGTGTAAAAATGAATGG 57.296 29.630 0.00 0.00 0.00 3.16
235 236 8.655970 GGTTGATTTAGTGTAAAAATGAATGGC 58.344 33.333 0.00 0.00 0.00 4.40
236 237 8.655970 GTTGATTTAGTGTAAAAATGAATGGCC 58.344 33.333 0.00 0.00 0.00 5.36
237 238 8.133024 TGATTTAGTGTAAAAATGAATGGCCT 57.867 30.769 3.32 0.00 0.00 5.19
238 239 8.592809 TGATTTAGTGTAAAAATGAATGGCCTT 58.407 29.630 3.32 0.00 0.00 4.35
239 240 8.776376 ATTTAGTGTAAAAATGAATGGCCTTG 57.224 30.769 3.32 0.00 0.00 3.61
240 241 7.531857 TTAGTGTAAAAATGAATGGCCTTGA 57.468 32.000 3.32 0.00 0.00 3.02
241 242 5.783111 AGTGTAAAAATGAATGGCCTTGAC 58.217 37.500 3.32 0.00 0.00 3.18
242 243 5.539955 AGTGTAAAAATGAATGGCCTTGACT 59.460 36.000 3.32 0.00 0.00 3.41
243 244 5.863935 GTGTAAAAATGAATGGCCTTGACTC 59.136 40.000 3.32 0.00 0.00 3.36
244 245 4.541973 AAAAATGAATGGCCTTGACTCC 57.458 40.909 3.32 0.00 0.00 3.85
245 246 1.755179 AATGAATGGCCTTGACTCCG 58.245 50.000 3.32 0.00 0.00 4.63
246 247 0.107017 ATGAATGGCCTTGACTCCGG 60.107 55.000 3.32 0.00 0.00 5.14
247 248 1.299976 GAATGGCCTTGACTCCGGT 59.700 57.895 3.32 0.00 0.00 5.28
248 249 1.002134 AATGGCCTTGACTCCGGTG 60.002 57.895 3.32 0.00 0.00 4.94
249 250 1.779061 AATGGCCTTGACTCCGGTGT 61.779 55.000 9.33 9.33 0.00 4.16
250 251 2.047179 GGCCTTGACTCCGGTGTC 60.047 66.667 26.08 26.08 37.47 3.67
251 252 2.741092 GCCTTGACTCCGGTGTCA 59.259 61.111 30.30 30.30 44.17 3.58
252 253 1.668151 GCCTTGACTCCGGTGTCAC 60.668 63.158 32.96 20.73 45.32 3.67
253 254 1.004918 CCTTGACTCCGGTGTCACC 60.005 63.158 32.96 12.40 45.32 4.02
254 255 1.472662 CCTTGACTCCGGTGTCACCT 61.473 60.000 32.96 0.76 45.32 4.00
255 256 0.393077 CTTGACTCCGGTGTCACCTT 59.607 55.000 32.96 0.00 45.32 3.50
256 257 0.391597 TTGACTCCGGTGTCACCTTC 59.608 55.000 32.96 10.80 45.32 3.46
257 258 0.469331 TGACTCCGGTGTCACCTTCT 60.469 55.000 30.30 0.00 41.43 2.85
258 259 0.038159 GACTCCGGTGTCACCTTCTG 60.038 60.000 27.42 9.48 35.66 3.02
259 260 0.469331 ACTCCGGTGTCACCTTCTGA 60.469 55.000 19.82 9.70 35.66 3.27
260 261 0.679505 CTCCGGTGTCACCTTCTGAA 59.320 55.000 19.82 0.00 35.66 3.02
261 262 1.070134 CTCCGGTGTCACCTTCTGAAA 59.930 52.381 19.82 0.00 35.66 2.69
262 263 1.070134 TCCGGTGTCACCTTCTGAAAG 59.930 52.381 19.82 1.58 35.66 2.62
263 264 1.202651 CCGGTGTCACCTTCTGAAAGT 60.203 52.381 19.82 0.00 35.66 2.66
264 265 2.561569 CGGTGTCACCTTCTGAAAGTT 58.438 47.619 19.82 0.00 35.66 2.66
265 266 2.287915 CGGTGTCACCTTCTGAAAGTTG 59.712 50.000 19.82 0.00 35.66 3.16
266 267 2.033424 GGTGTCACCTTCTGAAAGTTGC 59.967 50.000 15.22 0.00 34.73 4.17
267 268 2.682856 GTGTCACCTTCTGAAAGTTGCA 59.317 45.455 0.00 0.00 33.76 4.08
268 269 3.316308 GTGTCACCTTCTGAAAGTTGCAT 59.684 43.478 0.00 0.00 33.76 3.96
269 270 3.565482 TGTCACCTTCTGAAAGTTGCATC 59.435 43.478 0.00 0.00 33.76 3.91
270 271 3.565482 GTCACCTTCTGAAAGTTGCATCA 59.435 43.478 0.00 0.00 33.76 3.07
271 272 3.565482 TCACCTTCTGAAAGTTGCATCAC 59.435 43.478 0.00 0.00 33.76 3.06
272 273 3.316029 CACCTTCTGAAAGTTGCATCACA 59.684 43.478 0.00 0.00 33.76 3.58
273 274 4.022589 CACCTTCTGAAAGTTGCATCACAT 60.023 41.667 0.00 0.00 33.76 3.21
274 275 4.586001 ACCTTCTGAAAGTTGCATCACATT 59.414 37.500 0.00 0.00 33.76 2.71
275 276 5.069516 ACCTTCTGAAAGTTGCATCACATTT 59.930 36.000 0.00 0.00 33.76 2.32
276 277 5.404366 CCTTCTGAAAGTTGCATCACATTTG 59.596 40.000 0.00 0.00 33.76 2.32
277 278 5.518848 TCTGAAAGTTGCATCACATTTGT 57.481 34.783 0.00 0.00 33.76 2.83
278 279 6.631971 TCTGAAAGTTGCATCACATTTGTA 57.368 33.333 0.00 0.00 33.76 2.41
279 280 7.036996 TCTGAAAGTTGCATCACATTTGTAA 57.963 32.000 0.00 0.00 33.76 2.41
280 281 7.140705 TCTGAAAGTTGCATCACATTTGTAAG 58.859 34.615 0.00 0.00 33.76 2.34
281 282 6.804677 TGAAAGTTGCATCACATTTGTAAGT 58.195 32.000 0.00 0.00 0.00 2.24
282 283 7.935520 TGAAAGTTGCATCACATTTGTAAGTA 58.064 30.769 0.00 0.00 0.00 2.24
283 284 8.075574 TGAAAGTTGCATCACATTTGTAAGTAG 58.924 33.333 0.00 0.00 0.00 2.57
284 285 6.500684 AGTTGCATCACATTTGTAAGTAGG 57.499 37.500 0.00 0.00 0.00 3.18
285 286 6.003950 AGTTGCATCACATTTGTAAGTAGGT 58.996 36.000 0.00 0.00 0.00 3.08
286 287 7.165485 AGTTGCATCACATTTGTAAGTAGGTA 58.835 34.615 0.00 0.00 0.00 3.08
287 288 7.663905 AGTTGCATCACATTTGTAAGTAGGTAA 59.336 33.333 0.00 0.00 0.00 2.85
288 289 7.609760 TGCATCACATTTGTAAGTAGGTAAG 57.390 36.000 0.00 0.00 0.00 2.34
289 290 6.093495 TGCATCACATTTGTAAGTAGGTAAGC 59.907 38.462 0.00 0.00 0.00 3.09
290 291 6.093495 GCATCACATTTGTAAGTAGGTAAGCA 59.907 38.462 0.00 0.00 0.00 3.91
291 292 7.361713 GCATCACATTTGTAAGTAGGTAAGCAA 60.362 37.037 0.00 0.00 0.00 3.91
292 293 7.429636 TCACATTTGTAAGTAGGTAAGCAAC 57.570 36.000 0.00 0.00 0.00 4.17
293 294 6.146510 TCACATTTGTAAGTAGGTAAGCAACG 59.853 38.462 0.00 0.00 0.00 4.10
294 295 4.996062 TTTGTAAGTAGGTAAGCAACGC 57.004 40.909 0.00 0.00 0.00 4.84
295 296 3.663995 TGTAAGTAGGTAAGCAACGCA 57.336 42.857 0.00 0.00 0.00 5.24
296 297 4.196626 TGTAAGTAGGTAAGCAACGCAT 57.803 40.909 0.00 0.00 0.00 4.73
297 298 5.327616 TGTAAGTAGGTAAGCAACGCATA 57.672 39.130 0.00 0.00 0.00 3.14
298 299 5.909477 TGTAAGTAGGTAAGCAACGCATAT 58.091 37.500 0.00 0.00 0.00 1.78
299 300 5.981315 TGTAAGTAGGTAAGCAACGCATATC 59.019 40.000 0.00 0.00 0.00 1.63
300 301 4.939052 AGTAGGTAAGCAACGCATATCT 57.061 40.909 0.00 0.00 28.52 1.98
301 302 5.277857 AGTAGGTAAGCAACGCATATCTT 57.722 39.130 0.00 0.00 26.40 2.40
302 303 5.671493 AGTAGGTAAGCAACGCATATCTTT 58.329 37.500 0.00 0.00 26.40 2.52
303 304 5.753921 AGTAGGTAAGCAACGCATATCTTTC 59.246 40.000 0.00 0.00 26.40 2.62
304 305 4.770795 AGGTAAGCAACGCATATCTTTCT 58.229 39.130 0.00 0.00 0.00 2.52
305 306 5.914033 AGGTAAGCAACGCATATCTTTCTA 58.086 37.500 0.00 0.00 0.00 2.10
306 307 6.346096 AGGTAAGCAACGCATATCTTTCTAA 58.654 36.000 0.00 0.00 0.00 2.10
307 308 6.992715 AGGTAAGCAACGCATATCTTTCTAAT 59.007 34.615 0.00 0.00 0.00 1.73
308 309 7.041780 AGGTAAGCAACGCATATCTTTCTAATG 60.042 37.037 0.00 0.00 0.00 1.90
309 310 6.683974 AAGCAACGCATATCTTTCTAATGT 57.316 33.333 0.00 0.00 0.00 2.71
310 311 6.683974 AGCAACGCATATCTTTCTAATGTT 57.316 33.333 0.00 0.00 0.00 2.71
311 312 6.719365 AGCAACGCATATCTTTCTAATGTTC 58.281 36.000 0.00 0.00 0.00 3.18
312 313 5.617187 GCAACGCATATCTTTCTAATGTTCG 59.383 40.000 0.00 0.00 0.00 3.95
313 314 6.705782 CAACGCATATCTTTCTAATGTTCGT 58.294 36.000 0.00 0.00 0.00 3.85
314 315 6.903883 ACGCATATCTTTCTAATGTTCGTT 57.096 33.333 0.00 0.00 0.00 3.85
315 316 6.705782 ACGCATATCTTTCTAATGTTCGTTG 58.294 36.000 0.00 0.00 0.00 4.10
316 317 6.312918 ACGCATATCTTTCTAATGTTCGTTGT 59.687 34.615 0.00 0.00 0.00 3.32
317 318 7.490079 ACGCATATCTTTCTAATGTTCGTTGTA 59.510 33.333 0.00 0.00 0.00 2.41
318 319 7.787935 CGCATATCTTTCTAATGTTCGTTGTAC 59.212 37.037 0.00 0.00 0.00 2.90
319 320 8.818057 GCATATCTTTCTAATGTTCGTTGTACT 58.182 33.333 0.00 0.00 0.00 2.73
326 327 9.863845 TTTCTAATGTTCGTTGTACTATCATGA 57.136 29.630 0.00 0.00 0.00 3.07
333 334 9.425577 TGTTCGTTGTACTATCATGATTAAACA 57.574 29.630 14.65 12.25 0.00 2.83
336 337 9.040939 TCGTTGTACTATCATGATTAAACATGG 57.959 33.333 21.42 10.97 45.10 3.66
337 338 9.040939 CGTTGTACTATCATGATTAAACATGGA 57.959 33.333 21.42 11.61 45.10 3.41
388 389 1.135803 CGCATACTTTTGTTGACCCGG 60.136 52.381 0.00 0.00 0.00 5.73
389 390 1.201414 GCATACTTTTGTTGACCCGGG 59.799 52.381 22.25 22.25 0.00 5.73
402 403 1.150536 CCCGGGGAGAGAGAGAGAG 59.849 68.421 14.71 0.00 0.00 3.20
403 404 1.349542 CCCGGGGAGAGAGAGAGAGA 61.350 65.000 14.71 0.00 0.00 3.10
439 446 0.390472 CTCGCTCTGTTGGGTCTTCC 60.390 60.000 0.00 0.00 0.00 3.46
469 476 0.249868 GGCCAGCCCAAGACAAAAAC 60.250 55.000 0.00 0.00 0.00 2.43
470 477 0.463620 GCCAGCCCAAGACAAAAACA 59.536 50.000 0.00 0.00 0.00 2.83
471 478 1.538849 GCCAGCCCAAGACAAAAACAG 60.539 52.381 0.00 0.00 0.00 3.16
472 479 2.031120 CCAGCCCAAGACAAAAACAGA 58.969 47.619 0.00 0.00 0.00 3.41
474 481 1.683385 AGCCCAAGACAAAAACAGAGC 59.317 47.619 0.00 0.00 0.00 4.09
476 483 2.799562 GCCCAAGACAAAAACAGAGCAC 60.800 50.000 0.00 0.00 0.00 4.40
477 484 2.223805 CCCAAGACAAAAACAGAGCACC 60.224 50.000 0.00 0.00 0.00 5.01
478 485 2.223805 CCAAGACAAAAACAGAGCACCC 60.224 50.000 0.00 0.00 0.00 4.61
479 486 2.426738 CAAGACAAAAACAGAGCACCCA 59.573 45.455 0.00 0.00 0.00 4.51
480 487 2.949447 AGACAAAAACAGAGCACCCAT 58.051 42.857 0.00 0.00 0.00 4.00
481 488 2.887152 AGACAAAAACAGAGCACCCATC 59.113 45.455 0.00 0.00 0.00 3.51
482 489 1.963515 ACAAAAACAGAGCACCCATCC 59.036 47.619 0.00 0.00 0.00 3.51
483 490 1.068333 CAAAAACAGAGCACCCATCCG 60.068 52.381 0.00 0.00 0.00 4.18
484 491 0.110486 AAAACAGAGCACCCATCCGT 59.890 50.000 0.00 0.00 0.00 4.69
485 492 0.321653 AAACAGAGCACCCATCCGTC 60.322 55.000 0.00 0.00 0.00 4.79
486 493 2.185310 AACAGAGCACCCATCCGTCC 62.185 60.000 0.00 0.00 0.00 4.79
487 494 2.284625 AGAGCACCCATCCGTCCA 60.285 61.111 0.00 0.00 0.00 4.02
488 495 2.125106 GAGCACCCATCCGTCCAC 60.125 66.667 0.00 0.00 0.00 4.02
489 496 2.927856 AGCACCCATCCGTCCACA 60.928 61.111 0.00 0.00 0.00 4.17
490 497 2.436646 GCACCCATCCGTCCACAG 60.437 66.667 0.00 0.00 0.00 3.66
491 498 2.954684 GCACCCATCCGTCCACAGA 61.955 63.158 0.00 0.00 0.00 3.41
492 499 1.907739 CACCCATCCGTCCACAGAT 59.092 57.895 0.00 0.00 0.00 2.90
493 500 0.462581 CACCCATCCGTCCACAGATG 60.463 60.000 0.00 0.00 39.69 2.90
506 513 0.908198 ACAGATGGAAGAGTGGGAGC 59.092 55.000 0.00 0.00 0.00 4.70
509 516 0.179936 GATGGAAGAGTGGGAGCCAG 59.820 60.000 0.00 0.00 32.34 4.85
525 532 1.812922 CAGTCCCGAGTGCTGATGC 60.813 63.158 0.00 0.00 40.20 3.91
538 545 3.391736 TGATGCAGCAGTATCAGCC 57.608 52.632 0.00 0.00 41.14 4.85
556 563 2.730094 GCCAGCACCACAAACAGG 59.270 61.111 0.00 0.00 0.00 4.00
613 623 2.669569 GCCTCAGGAAGCAACGCA 60.670 61.111 0.00 0.00 0.00 5.24
624 634 2.514205 AGCAACGCAAAATCAAAGCT 57.486 40.000 0.00 0.00 0.00 3.74
627 637 2.096762 GCAACGCAAAATCAAAGCTTCC 60.097 45.455 0.00 0.00 0.00 3.46
696 706 2.717485 CCATACATGGCACGCAGC 59.283 61.111 0.00 0.00 41.75 5.25
779 822 3.962063 TCCCCTGTTTATATACGCTGACA 59.038 43.478 0.00 0.00 0.00 3.58
783 826 3.117794 TGTTTATATACGCTGACACGGC 58.882 45.455 0.00 0.00 37.37 5.68
817 860 4.022603 TCTTCCTCAATCTCAGTCCAGAG 58.977 47.826 0.00 0.00 36.97 3.35
822 869 3.013219 TCAATCTCAGTCCAGAGTCTCG 58.987 50.000 0.00 0.00 36.97 4.04
823 870 2.051334 ATCTCAGTCCAGAGTCTCGG 57.949 55.000 0.00 0.00 36.97 4.63
846 893 4.598894 CAGCTCCTCGGGCCATCG 62.599 72.222 4.39 0.00 0.00 3.84
848 895 4.593864 GCTCCTCGGGCCATCGTC 62.594 72.222 4.39 0.00 0.00 4.20
849 896 4.271816 CTCCTCGGGCCATCGTCG 62.272 72.222 4.39 0.00 0.00 5.12
871 918 2.125512 CGTCCCTCCTCTTTGCCG 60.126 66.667 0.00 0.00 0.00 5.69
890 937 3.648694 CCCCCTTCCTCTGGCTAC 58.351 66.667 0.00 0.00 0.00 3.58
892 939 1.341156 CCCCCTTCCTCTGGCTACTG 61.341 65.000 0.00 0.00 0.00 2.74
913 963 5.698741 TGGTAGTGCCAGTACTAGTACTA 57.301 43.478 30.34 16.00 43.98 1.82
914 964 5.431765 TGGTAGTGCCAGTACTAGTACTAC 58.568 45.833 28.62 28.62 45.76 2.73
1226 1276 6.707440 ATCTCTTCTCGCTTATCTTTCTCA 57.293 37.500 0.00 0.00 0.00 3.27
1227 1277 6.707440 TCTCTTCTCGCTTATCTTTCTCAT 57.293 37.500 0.00 0.00 0.00 2.90
1247 1297 5.052481 TCATCTTCATCCTATTCAACGCTG 58.948 41.667 0.00 0.00 0.00 5.18
1249 1299 1.953559 TCATCCTATTCAACGCTGCC 58.046 50.000 0.00 0.00 0.00 4.85
1251 1301 0.532862 ATCCTATTCAACGCTGCCCG 60.533 55.000 0.00 0.00 44.21 6.13
1298 1349 4.978099 TCCAATCCAATCTAATCTGCTCC 58.022 43.478 0.00 0.00 0.00 4.70
1303 1354 2.411904 CAATCTAATCTGCTCCGCTCC 58.588 52.381 0.00 0.00 0.00 4.70
1304 1355 0.600557 ATCTAATCTGCTCCGCTCCG 59.399 55.000 0.00 0.00 0.00 4.63
1305 1356 1.663074 CTAATCTGCTCCGCTCCGC 60.663 63.158 0.00 0.00 0.00 5.54
1306 1357 3.151958 TAATCTGCTCCGCTCCGCC 62.152 63.158 0.00 0.00 0.00 6.13
1388 1439 2.445525 AGGTAACCAATCAACCACCACT 59.554 45.455 0.00 0.00 35.64 4.00
1391 1442 2.178912 ACCAATCAACCACCACTACG 57.821 50.000 0.00 0.00 0.00 3.51
1481 1532 7.147915 TGGGTGGACAATAAGCAAGAAAATATC 60.148 37.037 0.00 0.00 0.00 1.63
1517 1568 6.094603 TCAGAAAGAATCTTGGATAAGCAAGC 59.905 38.462 0.00 0.00 35.73 4.01
1602 1653 2.764314 GCACGCCACATCCATCCAC 61.764 63.158 0.00 0.00 0.00 4.02
1611 1662 1.065199 ACATCCATCCACGCTGACATT 60.065 47.619 0.00 0.00 0.00 2.71
1614 1665 1.430632 CATCCACGCTGACATTGGC 59.569 57.895 0.00 0.00 0.00 4.52
1634 1699 2.412847 GCGACTTAACTGATTGTGCCAC 60.413 50.000 0.00 0.00 0.00 5.01
1655 1720 1.159713 CGTGCTGCAGGTTGTTGAGA 61.160 55.000 17.12 0.00 0.00 3.27
1669 1734 2.170397 TGTTGAGAAGTTGCAGTCAGGA 59.830 45.455 0.00 0.00 0.00 3.86
1741 1806 1.464376 CCGACAGGGTCATAGGCGAT 61.464 60.000 0.00 0.00 32.09 4.58
1780 1845 1.150081 GGATGTGAGATGGCAGGGG 59.850 63.158 0.00 0.00 0.00 4.79
1802 1867 2.342279 GCTCCGGCACAGTGTACA 59.658 61.111 0.00 0.00 38.54 2.90
1811 1876 1.877680 GCACAGTGTACATGCACCTCA 60.878 52.381 13.72 0.00 40.04 3.86
1818 1883 1.459592 GTACATGCACCTCAACGACAC 59.540 52.381 0.00 0.00 0.00 3.67
1827 1892 1.986378 CCTCAACGACACGATGAACTC 59.014 52.381 5.74 0.00 38.11 3.01
1828 1893 2.607038 CCTCAACGACACGATGAACTCA 60.607 50.000 5.74 0.00 38.11 3.41
1831 1896 3.244345 TCAACGACACGATGAACTCAAAC 59.756 43.478 0.00 0.00 35.87 2.93
1837 1902 3.627577 ACACGATGAACTCAAACTGCTTT 59.372 39.130 0.00 0.00 0.00 3.51
1841 1906 3.149436 TGAACTCAAACTGCTTTGTGC 57.851 42.857 0.00 0.00 38.38 4.57
1847 1912 4.035675 ACTCAAACTGCTTTGTGCTCTTAC 59.964 41.667 0.00 0.00 43.37 2.34
1858 1923 7.169645 TGCTTTGTGCTCTTACAATTTCAAATC 59.830 33.333 0.00 0.00 40.00 2.17
1882 1947 8.603242 TCCTACTCTACTGTTTTCACATTTTC 57.397 34.615 0.00 0.00 30.39 2.29
1914 1980 5.107133 GTCAAATAAGCGTGCCTAACTCTA 58.893 41.667 0.00 0.00 0.00 2.43
1920 1986 2.018515 GCGTGCCTAACTCTACTCTCT 58.981 52.381 0.00 0.00 0.00 3.10
1922 1988 3.271729 CGTGCCTAACTCTACTCTCTGA 58.728 50.000 0.00 0.00 0.00 3.27
1971 2037 3.571401 AGTCTGAAGGCCATTTTTCACTG 59.429 43.478 5.01 0.00 30.66 3.66
1997 2063 6.869206 AAACAAGGCCTACTCTATGTAAGA 57.131 37.500 5.16 0.00 0.00 2.10
2105 2171 9.975218 ACTTTCCACCTTACATAGAAAATATGT 57.025 29.630 5.88 5.88 40.77 2.29
2169 2236 3.978217 GCGATGACTCTAGCTTATGTGAC 59.022 47.826 0.00 0.00 0.00 3.67
2221 2317 8.915654 GGACACTTTCTTAAAATTTACATGCTG 58.084 33.333 0.00 0.00 0.00 4.41
2315 2411 9.205719 CAGTGAAATATCTACTTCCATGATCAG 57.794 37.037 0.09 0.00 0.00 2.90
2336 2432 7.062749 TCAGTAATAGGGATAGCGAATTTGT 57.937 36.000 0.00 0.00 0.00 2.83
2342 2438 5.505173 AGGGATAGCGAATTTGTGATTTG 57.495 39.130 0.00 0.00 0.00 2.32
2351 2447 5.387752 GCGAATTTGTGATTTGCTTCTTCAC 60.388 40.000 4.19 0.00 40.10 3.18
2376 2472 8.334632 ACAATTAAATGTTTTAAGTTGCAGTGC 58.665 29.630 8.58 8.58 0.00 4.40
2378 2474 2.483583 TGTTTTAAGTTGCAGTGCGG 57.516 45.000 11.20 0.00 0.00 5.69
2387 2483 1.334384 TTGCAGTGCGGATAGGCCTA 61.334 55.000 16.60 16.60 0.00 3.93
2390 2486 2.049063 GTGCGGATAGGCCTAGCG 60.049 66.667 21.33 16.85 0.00 4.26
2391 2487 3.991051 TGCGGATAGGCCTAGCGC 61.991 66.667 26.99 26.99 0.00 5.92
2393 2489 2.569134 CGGATAGGCCTAGCGCTC 59.431 66.667 21.33 11.91 37.74 5.03
2428 2524 6.424176 TTCAGACTCGTACTACATTCTCTG 57.576 41.667 0.00 0.00 0.00 3.35
2449 2545 5.582269 TCTGATGACGACTTCCAAATGAATC 59.418 40.000 0.00 0.00 31.06 2.52
2460 2556 7.613585 ACTTCCAAATGAATCATGCATAAACA 58.386 30.769 0.00 0.00 31.06 2.83
2640 2736 3.876914 CAGGCGGAACTGAAAGCATATTA 59.123 43.478 0.00 0.00 40.97 0.98
2989 3089 6.073276 CCTGAGATTCGAGAGACTAGTATGTG 60.073 46.154 0.00 0.00 41.84 3.21
2990 3090 6.350103 TGAGATTCGAGAGACTAGTATGTGT 58.650 40.000 0.00 0.00 41.84 3.72
2992 3092 5.464057 AGATTCGAGAGACTAGTATGTGTCG 59.536 44.000 10.85 10.85 41.84 4.35
3015 3160 5.399301 CGTGATGCCTTTTAACAAACTTCTG 59.601 40.000 0.00 0.00 0.00 3.02
3020 3165 7.159322 TGCCTTTTAACAAACTTCTGTTGTA 57.841 32.000 0.00 0.00 39.81 2.41
3044 3189 1.379044 GGTTGGATCTGCACCAGGG 60.379 63.158 0.00 0.00 38.70 4.45
3068 3213 4.898014 TCCCCATGGTTTAATTGATCCT 57.102 40.909 11.73 0.00 0.00 3.24
3071 3216 6.932753 TCCCCATGGTTTAATTGATCCTATT 58.067 36.000 11.73 0.00 0.00 1.73
3251 3400 3.832615 CCCGTAAGCTTGGGTACTTAT 57.167 47.619 9.86 0.00 40.76 1.73
3496 3647 6.999272 TGTTATACCTACTTGTCCTTTGCAAA 59.001 34.615 12.14 12.14 0.00 3.68
3548 3699 3.102052 TCTGTCAAAGGTGTTACGTCC 57.898 47.619 0.00 0.00 0.00 4.79
3557 3708 1.990563 GGTGTTACGTCCATCTCAACG 59.009 52.381 0.00 0.00 44.22 4.10
3581 3732 5.280215 GGATGTTCATAAGTATGGGCTAGCT 60.280 44.000 15.72 0.00 34.50 3.32
3672 3823 5.362556 TTTATCTTCACTTTGCTCTGCAC 57.637 39.130 0.00 0.00 38.71 4.57
3686 3837 6.088016 TGCTCTGCACATTTCTAACATTTT 57.912 33.333 0.00 0.00 31.71 1.82
3690 3841 7.574592 GCTCTGCACATTTCTAACATTTTCTCT 60.575 37.037 0.00 0.00 0.00 3.10
3691 3842 7.810658 TCTGCACATTTCTAACATTTTCTCTC 58.189 34.615 0.00 0.00 0.00 3.20
3695 3849 8.510505 GCACATTTCTAACATTTTCTCTCTCTT 58.489 33.333 0.00 0.00 0.00 2.85
3840 4004 3.071892 TCAACTGGACACCGTAATTTCCT 59.928 43.478 0.00 0.00 0.00 3.36
3895 4059 8.430801 TTTGTAAAATTCCAGTCAATTGTTGG 57.569 30.769 19.33 19.33 0.00 3.77
3899 4063 3.980646 TTCCAGTCAATTGTTGGAACG 57.019 42.857 27.89 9.54 43.94 3.95
4337 4507 7.120726 CCAGGTTATTTGGAAAGTACTGGTAAG 59.879 40.741 0.00 0.00 37.96 2.34
4805 4983 2.542205 CGCGGTCGACATATTTGAGGTA 60.542 50.000 18.91 0.00 38.10 3.08
4940 5118 1.339055 TGCCAATCCTGACAGTGCTAC 60.339 52.381 0.93 0.00 0.00 3.58
5026 5204 1.437986 GACCTCGAGGATTCCGTGG 59.562 63.158 37.69 9.39 43.75 4.94
5074 5252 1.066858 TGCTGGTTCCTAGAGAAAGCG 60.067 52.381 0.00 0.00 40.01 4.68
5075 5253 1.204941 GCTGGTTCCTAGAGAAAGCGA 59.795 52.381 0.00 0.00 35.85 4.93
5078 5256 4.315803 CTGGTTCCTAGAGAAAGCGAAAA 58.684 43.478 0.00 0.00 35.85 2.29
5271 5453 9.770097 ATTGGTTATCTCTCTGTAACATGTATG 57.230 33.333 0.00 0.00 33.53 2.39
5272 5454 8.533569 TGGTTATCTCTCTGTAACATGTATGA 57.466 34.615 0.00 0.00 33.53 2.15
5273 5455 8.414003 TGGTTATCTCTCTGTAACATGTATGAC 58.586 37.037 0.00 0.00 33.53 3.06
5312 5512 2.479566 TTTGGTTTGGCTGCAAAACA 57.520 40.000 28.36 18.98 39.67 2.83
5374 5579 6.619744 TGTATCAGTTACATTGGTTGCAATG 58.380 36.000 0.59 0.00 45.33 2.82
5508 5723 2.988684 TGCATCGCCGCCCTTTTT 60.989 55.556 0.00 0.00 0.00 1.94
5748 5963 1.676006 GTGTGACCAAAAGTCCCTGTG 59.324 52.381 0.00 0.00 45.68 3.66
5795 6010 3.964031 ACAGCCGAAGAAGAATAGGATCT 59.036 43.478 0.00 0.00 0.00 2.75
5808 6023 0.617413 AGGATCTGAGCTGTGGGTTG 59.383 55.000 0.00 0.00 0.00 3.77
5809 6024 1.028868 GGATCTGAGCTGTGGGTTGC 61.029 60.000 0.00 0.00 0.00 4.17
5898 6113 1.893544 AGAACAAGAGGAGTCGACGA 58.106 50.000 10.46 0.00 0.00 4.20
5921 6136 1.304179 TGGAGGAGGCAGGGATCCTA 61.304 60.000 12.58 0.00 46.12 2.94
5987 6212 5.838529 ACGAGGGTTTATGGTTTTTCTTTG 58.161 37.500 0.00 0.00 0.00 2.77
6034 6274 6.910536 AGAGTATACATTTGTTACAGCAGC 57.089 37.500 5.50 0.00 0.00 5.25
6192 6443 2.423538 GTGTATCTGGTTTGGATGTGCC 59.576 50.000 0.00 0.00 37.10 5.01
6209 6460 0.878961 GCCAATGGGGACGACGATAC 60.879 60.000 0.00 0.00 40.01 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 9.144747 GCGTACATCTCACATATTATTCATCTT 57.855 33.333 0.00 0.00 0.00 2.40
5 6 7.545615 TGGCGTACATCTCACATATTATTCATC 59.454 37.037 0.00 0.00 0.00 2.92
6 7 7.386059 TGGCGTACATCTCACATATTATTCAT 58.614 34.615 0.00 0.00 0.00 2.57
7 8 6.754193 TGGCGTACATCTCACATATTATTCA 58.246 36.000 0.00 0.00 0.00 2.57
8 9 7.834068 ATGGCGTACATCTCACATATTATTC 57.166 36.000 0.00 0.00 33.53 1.75
9 10 9.719355 TTTATGGCGTACATCTCACATATTATT 57.281 29.630 0.00 0.00 41.03 1.40
10 11 9.719355 TTTTATGGCGTACATCTCACATATTAT 57.281 29.630 0.00 0.00 41.03 1.28
11 12 9.549078 TTTTTATGGCGTACATCTCACATATTA 57.451 29.630 0.00 0.00 41.03 0.98
12 13 8.342634 GTTTTTATGGCGTACATCTCACATATT 58.657 33.333 0.00 0.00 41.03 1.28
13 14 7.041372 GGTTTTTATGGCGTACATCTCACATAT 60.041 37.037 0.00 0.00 41.03 1.78
14 15 6.259167 GGTTTTTATGGCGTACATCTCACATA 59.741 38.462 0.00 0.00 41.03 2.29
15 16 5.065988 GGTTTTTATGGCGTACATCTCACAT 59.934 40.000 0.00 0.00 41.03 3.21
16 17 4.393680 GGTTTTTATGGCGTACATCTCACA 59.606 41.667 0.00 0.00 41.03 3.58
17 18 4.493545 CGGTTTTTATGGCGTACATCTCAC 60.494 45.833 0.00 0.00 41.03 3.51
18 19 3.619483 CGGTTTTTATGGCGTACATCTCA 59.381 43.478 0.00 0.00 41.03 3.27
19 20 3.619929 ACGGTTTTTATGGCGTACATCTC 59.380 43.478 0.00 0.00 41.03 2.75
20 21 3.602483 ACGGTTTTTATGGCGTACATCT 58.398 40.909 0.00 0.00 41.03 2.90
21 22 4.567959 AGTACGGTTTTTATGGCGTACATC 59.432 41.667 6.50 0.00 41.03 3.06
22 23 4.506758 AGTACGGTTTTTATGGCGTACAT 58.493 39.130 6.50 0.67 43.68 2.29
23 24 3.924144 AGTACGGTTTTTATGGCGTACA 58.076 40.909 6.50 0.00 35.91 2.90
24 25 4.267690 GGTAGTACGGTTTTTATGGCGTAC 59.732 45.833 0.00 0.00 34.33 3.67
25 26 4.159506 AGGTAGTACGGTTTTTATGGCGTA 59.840 41.667 0.00 0.00 0.00 4.42
26 27 3.055891 AGGTAGTACGGTTTTTATGGCGT 60.056 43.478 0.00 0.00 0.00 5.68
27 28 3.524541 AGGTAGTACGGTTTTTATGGCG 58.475 45.455 0.00 0.00 0.00 5.69
28 29 4.033243 CGAAGGTAGTACGGTTTTTATGGC 59.967 45.833 0.00 0.00 0.00 4.40
29 30 5.707411 CGAAGGTAGTACGGTTTTTATGG 57.293 43.478 0.00 0.00 0.00 2.74
47 48 2.548480 GTGGTGAAAGGAGTTTCCGAAG 59.452 50.000 0.00 0.00 42.75 3.79
48 49 2.092861 TGTGGTGAAAGGAGTTTCCGAA 60.093 45.455 0.00 0.00 42.75 4.30
49 50 1.487142 TGTGGTGAAAGGAGTTTCCGA 59.513 47.619 0.00 0.00 42.75 4.55
50 51 1.961793 TGTGGTGAAAGGAGTTTCCG 58.038 50.000 0.00 0.00 42.75 4.30
51 52 3.020984 TGTTGTGGTGAAAGGAGTTTCC 58.979 45.455 0.00 0.00 41.37 3.13
52 53 3.442273 TGTGTTGTGGTGAAAGGAGTTTC 59.558 43.478 0.00 0.00 42.27 2.78
53 54 3.192633 GTGTGTTGTGGTGAAAGGAGTTT 59.807 43.478 0.00 0.00 0.00 2.66
54 55 2.752903 GTGTGTTGTGGTGAAAGGAGTT 59.247 45.455 0.00 0.00 0.00 3.01
55 56 2.290641 TGTGTGTTGTGGTGAAAGGAGT 60.291 45.455 0.00 0.00 0.00 3.85
56 57 2.097466 GTGTGTGTTGTGGTGAAAGGAG 59.903 50.000 0.00 0.00 0.00 3.69
57 58 2.088423 GTGTGTGTTGTGGTGAAAGGA 58.912 47.619 0.00 0.00 0.00 3.36
58 59 1.815613 TGTGTGTGTTGTGGTGAAAGG 59.184 47.619 0.00 0.00 0.00 3.11
59 60 2.227626 TGTGTGTGTGTTGTGGTGAAAG 59.772 45.455 0.00 0.00 0.00 2.62
60 61 2.030717 GTGTGTGTGTGTTGTGGTGAAA 60.031 45.455 0.00 0.00 0.00 2.69
61 62 1.537638 GTGTGTGTGTGTTGTGGTGAA 59.462 47.619 0.00 0.00 0.00 3.18
62 63 1.160989 GTGTGTGTGTGTTGTGGTGA 58.839 50.000 0.00 0.00 0.00 4.02
63 64 0.877743 TGTGTGTGTGTGTTGTGGTG 59.122 50.000 0.00 0.00 0.00 4.17
64 65 0.878416 GTGTGTGTGTGTGTTGTGGT 59.122 50.000 0.00 0.00 0.00 4.16
65 66 0.877743 TGTGTGTGTGTGTGTTGTGG 59.122 50.000 0.00 0.00 0.00 4.17
66 67 1.265365 TGTGTGTGTGTGTGTGTTGTG 59.735 47.619 0.00 0.00 0.00 3.33
67 68 1.598882 TGTGTGTGTGTGTGTGTTGT 58.401 45.000 0.00 0.00 0.00 3.32
68 69 2.917701 ATGTGTGTGTGTGTGTGTTG 57.082 45.000 0.00 0.00 0.00 3.33
69 70 6.875948 ATATAATGTGTGTGTGTGTGTGTT 57.124 33.333 0.00 0.00 0.00 3.32
70 71 9.830975 ATATATATAATGTGTGTGTGTGTGTGT 57.169 29.630 0.00 0.00 0.00 3.72
98 99 5.721232 ACTTTGACCGATACTTAGACCAAG 58.279 41.667 0.00 0.00 40.38 3.61
99 100 5.733620 ACTTTGACCGATACTTAGACCAA 57.266 39.130 0.00 0.00 0.00 3.67
100 101 6.839124 TTACTTTGACCGATACTTAGACCA 57.161 37.500 0.00 0.00 0.00 4.02
101 102 7.763071 ACATTTACTTTGACCGATACTTAGACC 59.237 37.037 0.00 0.00 0.00 3.85
102 103 8.699283 ACATTTACTTTGACCGATACTTAGAC 57.301 34.615 0.00 0.00 0.00 2.59
103 104 8.525316 TGACATTTACTTTGACCGATACTTAGA 58.475 33.333 0.00 0.00 0.00 2.10
104 105 8.697846 TGACATTTACTTTGACCGATACTTAG 57.302 34.615 0.00 0.00 0.00 2.18
105 106 8.525316 TCTGACATTTACTTTGACCGATACTTA 58.475 33.333 0.00 0.00 0.00 2.24
106 107 7.383687 TCTGACATTTACTTTGACCGATACTT 58.616 34.615 0.00 0.00 0.00 2.24
107 108 6.931838 TCTGACATTTACTTTGACCGATACT 58.068 36.000 0.00 0.00 0.00 2.12
108 109 6.812160 ACTCTGACATTTACTTTGACCGATAC 59.188 38.462 0.00 0.00 0.00 2.24
109 110 6.931838 ACTCTGACATTTACTTTGACCGATA 58.068 36.000 0.00 0.00 0.00 2.92
110 111 5.794894 ACTCTGACATTTACTTTGACCGAT 58.205 37.500 0.00 0.00 0.00 4.18
111 112 5.209818 ACTCTGACATTTACTTTGACCGA 57.790 39.130 0.00 0.00 0.00 4.69
112 113 6.590292 ACATACTCTGACATTTACTTTGACCG 59.410 38.462 0.00 0.00 0.00 4.79
113 114 7.907214 ACATACTCTGACATTTACTTTGACC 57.093 36.000 0.00 0.00 0.00 4.02
142 143 8.978472 CCCTTCATCGGAATATATAAGGTCTAA 58.022 37.037 7.20 0.00 31.98 2.10
143 144 8.341513 TCCCTTCATCGGAATATATAAGGTCTA 58.658 37.037 7.20 0.00 31.98 2.59
144 145 7.189794 TCCCTTCATCGGAATATATAAGGTCT 58.810 38.462 7.20 0.00 31.98 3.85
145 146 7.419711 TCCCTTCATCGGAATATATAAGGTC 57.580 40.000 7.20 0.00 31.98 3.85
146 147 6.127026 GCTCCCTTCATCGGAATATATAAGGT 60.127 42.308 7.20 0.00 31.98 3.50
147 148 6.127054 TGCTCCCTTCATCGGAATATATAAGG 60.127 42.308 0.00 0.00 31.34 2.69
148 149 6.878317 TGCTCCCTTCATCGGAATATATAAG 58.122 40.000 0.00 0.00 31.34 1.73
149 150 6.127054 CCTGCTCCCTTCATCGGAATATATAA 60.127 42.308 0.00 0.00 31.34 0.98
150 151 5.363868 CCTGCTCCCTTCATCGGAATATATA 59.636 44.000 0.00 0.00 31.34 0.86
151 152 4.163078 CCTGCTCCCTTCATCGGAATATAT 59.837 45.833 0.00 0.00 31.34 0.86
152 153 3.515502 CCTGCTCCCTTCATCGGAATATA 59.484 47.826 0.00 0.00 31.34 0.86
153 154 2.304180 CCTGCTCCCTTCATCGGAATAT 59.696 50.000 0.00 0.00 31.34 1.28
154 155 1.694150 CCTGCTCCCTTCATCGGAATA 59.306 52.381 0.00 0.00 31.34 1.75
155 156 0.471617 CCTGCTCCCTTCATCGGAAT 59.528 55.000 0.00 0.00 31.34 3.01
156 157 0.617535 TCCTGCTCCCTTCATCGGAA 60.618 55.000 0.00 0.00 0.00 4.30
157 158 1.001631 TCCTGCTCCCTTCATCGGA 59.998 57.895 0.00 0.00 0.00 4.55
158 159 1.445095 CTCCTGCTCCCTTCATCGG 59.555 63.158 0.00 0.00 0.00 4.18
159 160 1.333636 ACCTCCTGCTCCCTTCATCG 61.334 60.000 0.00 0.00 0.00 3.84
160 161 0.915364 AACCTCCTGCTCCCTTCATC 59.085 55.000 0.00 0.00 0.00 2.92
161 162 1.005215 CAAACCTCCTGCTCCCTTCAT 59.995 52.381 0.00 0.00 0.00 2.57
162 163 0.401738 CAAACCTCCTGCTCCCTTCA 59.598 55.000 0.00 0.00 0.00 3.02
163 164 0.402121 ACAAACCTCCTGCTCCCTTC 59.598 55.000 0.00 0.00 0.00 3.46
164 165 0.111253 CACAAACCTCCTGCTCCCTT 59.889 55.000 0.00 0.00 0.00 3.95
165 166 0.768221 TCACAAACCTCCTGCTCCCT 60.768 55.000 0.00 0.00 0.00 4.20
166 167 0.606673 GTCACAAACCTCCTGCTCCC 60.607 60.000 0.00 0.00 0.00 4.30
167 168 0.606673 GGTCACAAACCTCCTGCTCC 60.607 60.000 0.00 0.00 45.45 4.70
168 169 2.934083 GGTCACAAACCTCCTGCTC 58.066 57.895 0.00 0.00 45.45 4.26
174 175 7.323888 TGTGATATCCAGGGTCACAAACCTC 62.324 48.000 16.31 0.00 46.45 3.85
175 176 5.557998 TGTGATATCCAGGGTCACAAACCT 61.558 45.833 16.31 0.00 46.45 3.50
176 177 3.308117 TGTGATATCCAGGGTCACAAACC 60.308 47.826 16.31 0.00 46.45 3.27
177 178 3.950397 TGTGATATCCAGGGTCACAAAC 58.050 45.455 16.31 0.00 46.45 2.93
181 182 1.806623 GCGTGTGATATCCAGGGTCAC 60.807 57.143 11.50 11.50 41.90 3.67
182 183 0.464036 GCGTGTGATATCCAGGGTCA 59.536 55.000 0.00 0.00 0.00 4.02
183 184 0.597637 CGCGTGTGATATCCAGGGTC 60.598 60.000 0.00 0.00 0.00 4.46
184 185 1.441729 CGCGTGTGATATCCAGGGT 59.558 57.895 0.00 0.00 0.00 4.34
185 186 1.300931 CCGCGTGTGATATCCAGGG 60.301 63.158 4.92 0.00 0.00 4.45
186 187 0.179084 AACCGCGTGTGATATCCAGG 60.179 55.000 4.92 5.11 0.00 4.45
187 188 1.327460 CAAACCGCGTGTGATATCCAG 59.673 52.381 4.92 0.00 0.00 3.86
188 189 1.338294 ACAAACCGCGTGTGATATCCA 60.338 47.619 4.92 0.00 0.00 3.41
189 190 1.365699 ACAAACCGCGTGTGATATCC 58.634 50.000 4.92 0.00 0.00 2.59
195 196 1.585002 CAACCACAAACCGCGTGTG 60.585 57.895 18.41 18.41 44.90 3.82
196 197 1.098712 ATCAACCACAAACCGCGTGT 61.099 50.000 4.92 0.00 32.26 4.49
197 198 0.030101 AATCAACCACAAACCGCGTG 59.970 50.000 4.92 0.00 0.00 5.34
198 199 0.741915 AAATCAACCACAAACCGCGT 59.258 45.000 4.92 0.00 0.00 6.01
199 200 2.031508 ACTAAATCAACCACAAACCGCG 60.032 45.455 0.00 0.00 0.00 6.46
200 201 3.243267 ACACTAAATCAACCACAAACCGC 60.243 43.478 0.00 0.00 0.00 5.68
201 202 4.561735 ACACTAAATCAACCACAAACCG 57.438 40.909 0.00 0.00 0.00 4.44
202 203 8.705048 TTTTTACACTAAATCAACCACAAACC 57.295 30.769 0.00 0.00 0.00 3.27
208 209 9.703892 CCATTCATTTTTACACTAAATCAACCA 57.296 29.630 0.00 0.00 0.00 3.67
209 210 8.655970 GCCATTCATTTTTACACTAAATCAACC 58.344 33.333 0.00 0.00 0.00 3.77
210 211 8.655970 GGCCATTCATTTTTACACTAAATCAAC 58.344 33.333 0.00 0.00 0.00 3.18
211 212 8.592809 AGGCCATTCATTTTTACACTAAATCAA 58.407 29.630 5.01 0.00 0.00 2.57
212 213 8.133024 AGGCCATTCATTTTTACACTAAATCA 57.867 30.769 5.01 0.00 0.00 2.57
213 214 8.872845 CAAGGCCATTCATTTTTACACTAAATC 58.127 33.333 5.01 0.00 0.00 2.17
214 215 8.592809 TCAAGGCCATTCATTTTTACACTAAAT 58.407 29.630 5.01 0.00 0.00 1.40
215 216 7.870445 GTCAAGGCCATTCATTTTTACACTAAA 59.130 33.333 5.01 0.00 0.00 1.85
216 217 7.232534 AGTCAAGGCCATTCATTTTTACACTAA 59.767 33.333 5.01 0.00 0.00 2.24
217 218 6.719370 AGTCAAGGCCATTCATTTTTACACTA 59.281 34.615 5.01 0.00 0.00 2.74
218 219 5.539955 AGTCAAGGCCATTCATTTTTACACT 59.460 36.000 5.01 0.00 0.00 3.55
219 220 5.783111 AGTCAAGGCCATTCATTTTTACAC 58.217 37.500 5.01 0.00 0.00 2.90
220 221 5.047377 GGAGTCAAGGCCATTCATTTTTACA 60.047 40.000 5.01 0.00 0.00 2.41
221 222 5.410924 GGAGTCAAGGCCATTCATTTTTAC 58.589 41.667 5.01 0.00 0.00 2.01
222 223 4.157656 CGGAGTCAAGGCCATTCATTTTTA 59.842 41.667 5.01 0.00 0.00 1.52
223 224 3.056607 CGGAGTCAAGGCCATTCATTTTT 60.057 43.478 5.01 0.00 0.00 1.94
224 225 2.493278 CGGAGTCAAGGCCATTCATTTT 59.507 45.455 5.01 0.00 0.00 1.82
225 226 2.094675 CGGAGTCAAGGCCATTCATTT 58.905 47.619 5.01 0.00 0.00 2.32
226 227 1.683011 CCGGAGTCAAGGCCATTCATT 60.683 52.381 5.01 0.00 0.00 2.57
227 228 0.107017 CCGGAGTCAAGGCCATTCAT 60.107 55.000 5.01 0.00 0.00 2.57
228 229 1.299648 CCGGAGTCAAGGCCATTCA 59.700 57.895 5.01 0.00 0.00 2.57
229 230 1.026718 CACCGGAGTCAAGGCCATTC 61.027 60.000 9.46 0.00 0.00 2.67
230 231 1.002134 CACCGGAGTCAAGGCCATT 60.002 57.895 9.46 0.00 0.00 3.16
231 232 2.185310 GACACCGGAGTCAAGGCCAT 62.185 60.000 24.90 0.00 38.40 4.40
232 233 2.847234 ACACCGGAGTCAAGGCCA 60.847 61.111 9.46 0.00 0.00 5.36
233 234 2.047179 GACACCGGAGTCAAGGCC 60.047 66.667 24.90 0.00 38.40 5.19
234 235 2.741092 TGACACCGGAGTCAAGGC 59.259 61.111 29.26 6.49 44.92 4.35
238 239 0.469331 AGAAGGTGACACCGGAGTCA 60.469 55.000 28.00 28.00 44.90 3.41
239 240 0.038159 CAGAAGGTGACACCGGAGTC 60.038 60.000 23.40 23.40 44.90 3.36
240 241 0.469331 TCAGAAGGTGACACCGGAGT 60.469 55.000 18.93 6.23 44.90 3.85
241 242 0.679505 TTCAGAAGGTGACACCGGAG 59.320 55.000 18.93 1.26 44.90 4.63
242 243 1.070134 CTTTCAGAAGGTGACACCGGA 59.930 52.381 18.93 12.20 44.90 5.14
243 244 1.202651 ACTTTCAGAAGGTGACACCGG 60.203 52.381 18.93 0.00 44.90 5.28
244 245 2.240493 ACTTTCAGAAGGTGACACCG 57.760 50.000 18.93 4.96 44.90 4.94
251 252 3.554934 TGTGATGCAACTTTCAGAAGGT 58.445 40.909 0.00 0.00 37.19 3.50
252 253 4.778534 ATGTGATGCAACTTTCAGAAGG 57.221 40.909 0.00 0.00 37.19 3.46
253 254 5.981315 ACAAATGTGATGCAACTTTCAGAAG 59.019 36.000 0.00 0.00 38.87 2.85
254 255 5.904941 ACAAATGTGATGCAACTTTCAGAA 58.095 33.333 0.00 0.00 0.00 3.02
255 256 5.518848 ACAAATGTGATGCAACTTTCAGA 57.481 34.783 0.00 0.00 0.00 3.27
256 257 6.919662 ACTTACAAATGTGATGCAACTTTCAG 59.080 34.615 0.00 0.00 0.00 3.02
257 258 6.804677 ACTTACAAATGTGATGCAACTTTCA 58.195 32.000 0.00 0.00 0.00 2.69
258 259 7.538678 CCTACTTACAAATGTGATGCAACTTTC 59.461 37.037 0.00 0.00 0.00 2.62
259 260 7.014230 ACCTACTTACAAATGTGATGCAACTTT 59.986 33.333 0.00 0.00 0.00 2.66
260 261 6.490040 ACCTACTTACAAATGTGATGCAACTT 59.510 34.615 0.00 0.00 0.00 2.66
261 262 6.003950 ACCTACTTACAAATGTGATGCAACT 58.996 36.000 0.00 0.00 0.00 3.16
262 263 6.254281 ACCTACTTACAAATGTGATGCAAC 57.746 37.500 0.00 0.00 0.00 4.17
263 264 7.361713 GCTTACCTACTTACAAATGTGATGCAA 60.362 37.037 0.00 0.00 0.00 4.08
264 265 6.093495 GCTTACCTACTTACAAATGTGATGCA 59.907 38.462 0.00 0.00 0.00 3.96
265 266 6.093495 TGCTTACCTACTTACAAATGTGATGC 59.907 38.462 0.00 0.00 0.00 3.91
266 267 7.609760 TGCTTACCTACTTACAAATGTGATG 57.390 36.000 0.00 0.00 0.00 3.07
267 268 7.148474 CGTTGCTTACCTACTTACAAATGTGAT 60.148 37.037 0.00 0.00 0.00 3.06
268 269 6.146510 CGTTGCTTACCTACTTACAAATGTGA 59.853 38.462 0.00 0.00 0.00 3.58
269 270 6.304126 CGTTGCTTACCTACTTACAAATGTG 58.696 40.000 0.00 0.00 0.00 3.21
270 271 5.106830 GCGTTGCTTACCTACTTACAAATGT 60.107 40.000 0.00 0.00 0.00 2.71
271 272 5.106869 TGCGTTGCTTACCTACTTACAAATG 60.107 40.000 0.00 0.00 0.00 2.32
272 273 4.998672 TGCGTTGCTTACCTACTTACAAAT 59.001 37.500 0.00 0.00 0.00 2.32
273 274 4.378774 TGCGTTGCTTACCTACTTACAAA 58.621 39.130 0.00 0.00 0.00 2.83
274 275 3.992643 TGCGTTGCTTACCTACTTACAA 58.007 40.909 0.00 0.00 0.00 2.41
275 276 3.663995 TGCGTTGCTTACCTACTTACA 57.336 42.857 0.00 0.00 0.00 2.41
276 277 6.214399 AGATATGCGTTGCTTACCTACTTAC 58.786 40.000 0.00 0.00 0.00 2.34
277 278 6.401047 AGATATGCGTTGCTTACCTACTTA 57.599 37.500 0.00 0.00 0.00 2.24
278 279 5.277857 AGATATGCGTTGCTTACCTACTT 57.722 39.130 0.00 0.00 0.00 2.24
279 280 4.939052 AGATATGCGTTGCTTACCTACT 57.061 40.909 0.00 0.00 0.00 2.57
280 281 5.753921 AGAAAGATATGCGTTGCTTACCTAC 59.246 40.000 0.00 0.00 0.00 3.18
281 282 5.914033 AGAAAGATATGCGTTGCTTACCTA 58.086 37.500 0.00 0.00 0.00 3.08
282 283 4.770795 AGAAAGATATGCGTTGCTTACCT 58.229 39.130 0.00 0.00 0.00 3.08
283 284 6.598753 TTAGAAAGATATGCGTTGCTTACC 57.401 37.500 0.00 0.00 0.00 2.85
284 285 7.630924 ACATTAGAAAGATATGCGTTGCTTAC 58.369 34.615 0.00 0.00 0.00 2.34
285 286 7.786178 ACATTAGAAAGATATGCGTTGCTTA 57.214 32.000 0.00 0.00 0.00 3.09
286 287 6.683974 ACATTAGAAAGATATGCGTTGCTT 57.316 33.333 0.00 0.00 0.00 3.91
287 288 6.510157 CGAACATTAGAAAGATATGCGTTGCT 60.510 38.462 0.00 0.00 0.00 3.91
288 289 5.617187 CGAACATTAGAAAGATATGCGTTGC 59.383 40.000 0.00 0.00 0.00 4.17
289 290 6.705782 ACGAACATTAGAAAGATATGCGTTG 58.294 36.000 0.00 0.00 0.00 4.10
290 291 6.903883 ACGAACATTAGAAAGATATGCGTT 57.096 33.333 0.00 0.00 0.00 4.84
291 292 6.312918 ACAACGAACATTAGAAAGATATGCGT 59.687 34.615 0.00 0.00 0.00 5.24
292 293 6.705782 ACAACGAACATTAGAAAGATATGCG 58.294 36.000 0.00 0.00 0.00 4.73
293 294 8.818057 AGTACAACGAACATTAGAAAGATATGC 58.182 33.333 0.00 0.00 0.00 3.14
300 301 9.863845 TCATGATAGTACAACGAACATTAGAAA 57.136 29.630 0.00 0.00 0.00 2.52
307 308 9.425577 TGTTTAATCATGATAGTACAACGAACA 57.574 29.630 9.04 3.57 0.00 3.18
310 311 9.040939 CCATGTTTAATCATGATAGTACAACGA 57.959 33.333 22.55 0.97 45.41 3.85
311 312 9.040939 TCCATGTTTAATCATGATAGTACAACG 57.959 33.333 22.55 8.58 45.41 4.10
360 361 6.183360 GGTCAACAAAAGTATGCGTTGTTTTT 60.183 34.615 13.29 0.00 42.13 1.94
361 362 5.289917 GGTCAACAAAAGTATGCGTTGTTTT 59.710 36.000 13.29 0.00 42.13 2.43
362 363 4.801516 GGTCAACAAAAGTATGCGTTGTTT 59.198 37.500 13.29 0.00 42.13 2.83
363 364 4.356289 GGTCAACAAAAGTATGCGTTGTT 58.644 39.130 11.10 11.10 44.22 2.83
364 365 3.243267 GGGTCAACAAAAGTATGCGTTGT 60.243 43.478 0.00 1.13 39.72 3.32
365 366 3.305110 GGGTCAACAAAAGTATGCGTTG 58.695 45.455 0.00 0.00 40.03 4.10
366 367 2.031508 CGGGTCAACAAAAGTATGCGTT 60.032 45.455 0.00 0.00 0.00 4.84
375 376 0.109723 CTCTCCCCGGGTCAACAAAA 59.890 55.000 21.85 0.00 0.00 2.44
388 389 1.485066 ACGTCTCTCTCTCTCTCTCCC 59.515 57.143 0.00 0.00 0.00 4.30
389 390 2.550978 CACGTCTCTCTCTCTCTCTCC 58.449 57.143 0.00 0.00 0.00 3.71
423 430 0.670854 GACGGAAGACCCAACAGAGC 60.671 60.000 0.00 0.00 34.14 4.09
469 476 2.187946 GGACGGATGGGTGCTCTG 59.812 66.667 0.00 0.00 0.00 3.35
470 477 2.284625 TGGACGGATGGGTGCTCT 60.285 61.111 0.00 0.00 0.00 4.09
471 478 2.125106 GTGGACGGATGGGTGCTC 60.125 66.667 0.00 0.00 0.00 4.26
472 479 2.927856 TGTGGACGGATGGGTGCT 60.928 61.111 0.00 0.00 0.00 4.40
474 481 1.907739 ATCTGTGGACGGATGGGTG 59.092 57.895 0.07 0.00 40.28 4.61
485 492 1.209019 CTCCCACTCTTCCATCTGTGG 59.791 57.143 0.00 0.00 46.74 4.17
486 493 1.406614 GCTCCCACTCTTCCATCTGTG 60.407 57.143 0.00 0.00 0.00 3.66
487 494 0.908198 GCTCCCACTCTTCCATCTGT 59.092 55.000 0.00 0.00 0.00 3.41
488 495 0.179936 GGCTCCCACTCTTCCATCTG 59.820 60.000 0.00 0.00 0.00 2.90
489 496 0.252881 TGGCTCCCACTCTTCCATCT 60.253 55.000 0.00 0.00 0.00 2.90
490 497 0.179936 CTGGCTCCCACTCTTCCATC 59.820 60.000 0.00 0.00 0.00 3.51
491 498 0.548682 ACTGGCTCCCACTCTTCCAT 60.549 55.000 0.00 0.00 0.00 3.41
492 499 1.152030 ACTGGCTCCCACTCTTCCA 60.152 57.895 0.00 0.00 0.00 3.53
493 500 1.599576 GACTGGCTCCCACTCTTCC 59.400 63.158 0.00 0.00 0.00 3.46
494 501 1.599576 GGACTGGCTCCCACTCTTC 59.400 63.158 0.00 0.00 31.83 2.87
495 502 3.813150 GGACTGGCTCCCACTCTT 58.187 61.111 0.00 0.00 31.83 2.85
502 509 4.459089 GCACTCGGGACTGGCTCC 62.459 72.222 0.00 0.00 38.55 4.70
506 513 1.153489 CATCAGCACTCGGGACTGG 60.153 63.158 9.64 0.00 32.19 4.00
525 532 1.886313 CTGGCGGCTGATACTGCTG 60.886 63.158 11.43 0.00 41.87 4.41
528 535 2.176273 GTGCTGGCGGCTGATACTG 61.176 63.158 20.66 0.00 42.39 2.74
529 536 2.187946 GTGCTGGCGGCTGATACT 59.812 61.111 20.66 0.00 42.39 2.12
530 537 2.897350 GGTGCTGGCGGCTGATAC 60.897 66.667 20.66 15.73 42.39 2.24
531 538 3.398310 TGGTGCTGGCGGCTGATA 61.398 61.111 20.66 4.66 42.39 2.15
535 542 4.892965 TTTGTGGTGCTGGCGGCT 62.893 61.111 20.66 0.00 42.39 5.52
536 543 4.645921 GTTTGTGGTGCTGGCGGC 62.646 66.667 12.43 12.43 42.22 6.53
537 544 3.198236 CTGTTTGTGGTGCTGGCGG 62.198 63.158 0.00 0.00 0.00 6.13
538 545 2.332514 CTGTTTGTGGTGCTGGCG 59.667 61.111 0.00 0.00 0.00 5.69
613 623 6.152379 GTCGATTTCTGGAAGCTTTGATTTT 58.848 36.000 0.00 0.00 0.00 1.82
624 634 1.737236 CAATGCCGTCGATTTCTGGAA 59.263 47.619 0.00 0.00 0.00 3.53
627 637 3.357021 CAATCAATGCCGTCGATTTCTG 58.643 45.455 0.00 0.00 0.00 3.02
702 712 8.986477 ATGAAAACTTTACATAATCCTTGTGC 57.014 30.769 0.00 0.00 0.00 4.57
736 759 5.012561 GGGAAGAGTGTATGATAATCCAGCT 59.987 44.000 0.00 0.00 0.00 4.24
750 773 5.452917 GCGTATATAAACAGGGGAAGAGTGT 60.453 44.000 0.00 0.00 0.00 3.55
783 826 2.017559 GAGGAAGATGGTCCGGGTCG 62.018 65.000 0.00 0.00 43.03 4.79
792 835 3.453717 TGGACTGAGATTGAGGAAGATGG 59.546 47.826 0.00 0.00 0.00 3.51
817 860 0.968393 AGGAGCTGACCTTCCGAGAC 60.968 60.000 0.00 0.00 36.86 3.36
822 869 2.726351 CCCGAGGAGCTGACCTTCC 61.726 68.421 0.00 0.00 40.73 3.46
823 870 2.896443 CCCGAGGAGCTGACCTTC 59.104 66.667 0.00 0.00 40.73 3.46
849 896 2.647158 AAAGAGGAGGGACGACGCC 61.647 63.158 0.00 0.00 0.00 5.68
850 897 1.446272 CAAAGAGGAGGGACGACGC 60.446 63.158 0.00 0.00 0.00 5.19
892 939 4.819088 GGTAGTACTAGTACTGGCACTACC 59.181 50.000 34.89 34.89 46.56 3.18
914 964 9.151471 CGGGATTGAATTGTTATATACTACTGG 57.849 37.037 0.00 0.00 0.00 4.00
915 965 9.706691 ACGGGATTGAATTGTTATATACTACTG 57.293 33.333 0.00 0.00 0.00 2.74
1201 1251 7.644490 TGAGAAAGATAAGCGAGAAGAGATAC 58.356 38.462 0.00 0.00 0.00 2.24
1203 1253 6.707440 TGAGAAAGATAAGCGAGAAGAGAT 57.293 37.500 0.00 0.00 0.00 2.75
1226 1276 3.812053 GCAGCGTTGAATAGGATGAAGAT 59.188 43.478 2.38 0.00 29.85 2.40
1227 1277 3.198068 GCAGCGTTGAATAGGATGAAGA 58.802 45.455 2.38 0.00 29.85 2.87
1247 1297 2.885894 ACTGAAGTAGCTATAGTCGGGC 59.114 50.000 0.00 0.00 0.00 6.13
1249 1299 5.752892 TGAACTGAAGTAGCTATAGTCGG 57.247 43.478 0.00 2.79 0.00 4.79
1481 1532 8.333908 CCAAGATTCTTTCTGAATTATGTCGAG 58.666 37.037 0.00 0.00 44.70 4.04
1517 1568 4.701651 TCCAACAGTGCAAGAAGATATTGG 59.298 41.667 0.00 0.00 36.27 3.16
1546 1597 0.668706 GAGATGCGTGTGCTGTCTGT 60.669 55.000 0.00 0.00 43.34 3.41
1594 1645 0.392863 CCAATGTCAGCGTGGATGGA 60.393 55.000 0.00 0.00 0.00 3.41
1611 1662 1.804151 GCACAATCAGTTAAGTCGCCA 59.196 47.619 0.00 0.00 0.00 5.69
1614 1665 3.067106 AGTGGCACAATCAGTTAAGTCG 58.933 45.455 21.41 0.00 44.16 4.18
1634 1699 1.159713 TCAACAACCTGCAGCACGAG 61.160 55.000 8.66 0.00 0.00 4.18
1655 1720 1.312815 GCACTTCCTGACTGCAACTT 58.687 50.000 0.00 0.00 0.00 2.66
1690 1755 4.742201 GGCAGCTCGGTTCGCAGA 62.742 66.667 0.00 0.00 0.00 4.26
1727 1792 0.188587 TGGAGATCGCCTATGACCCT 59.811 55.000 17.00 0.00 0.00 4.34
1729 1794 0.605589 CCTGGAGATCGCCTATGACC 59.394 60.000 17.00 0.00 0.00 4.02
1741 1806 0.473694 TGTCTTTGAGGGCCTGGAGA 60.474 55.000 12.95 8.51 0.00 3.71
1750 1815 4.277515 TCTCACATCCTTGTCTTTGAGG 57.722 45.455 0.00 0.00 32.34 3.86
1795 1860 1.343142 TCGTTGAGGTGCATGTACACT 59.657 47.619 16.11 10.07 40.52 3.55
1802 1867 0.037326 ATCGTGTCGTTGAGGTGCAT 60.037 50.000 0.00 0.00 0.00 3.96
1811 1876 3.245284 CAGTTTGAGTTCATCGTGTCGTT 59.755 43.478 0.00 0.00 0.00 3.85
1818 1883 3.970610 CACAAAGCAGTTTGAGTTCATCG 59.029 43.478 5.51 0.00 45.22 3.84
1837 1902 6.899393 AGGATTTGAAATTGTAAGAGCACA 57.101 33.333 0.00 0.00 0.00 4.57
1858 1923 8.608844 AGAAAATGTGAAAACAGTAGAGTAGG 57.391 34.615 0.00 0.00 0.00 3.18
1882 1947 4.790140 GCACGCTTATTTGACATGAAGAAG 59.210 41.667 0.00 0.00 0.00 2.85
1885 1950 3.127548 AGGCACGCTTATTTGACATGAAG 59.872 43.478 0.00 0.00 0.00 3.02
1914 1980 7.144661 CGATATAACTGCAAGAATCAGAGAGT 58.855 38.462 0.00 0.00 37.43 3.24
1920 1986 4.751600 CCAGCGATATAACTGCAAGAATCA 59.248 41.667 0.00 0.00 37.43 2.57
1922 1988 4.067896 CCCAGCGATATAACTGCAAGAAT 58.932 43.478 0.00 0.00 37.43 2.40
1971 2037 8.639761 TCTTACATAGAGTAGGCCTTGTTTATC 58.360 37.037 12.58 0.12 33.43 1.75
1997 2063 8.224620 AGCCAGGATATATTAAAATCTCAGGT 57.775 34.615 0.00 0.00 0.00 4.00
2069 2135 8.650143 ATGTAAGGTGGAAAGTGATACAAATT 57.350 30.769 0.00 0.00 0.00 1.82
2070 2136 9.396022 CTATGTAAGGTGGAAAGTGATACAAAT 57.604 33.333 0.00 0.00 0.00 2.32
2137 2203 5.124776 AGCTAGAGTCATCGCCTATCATTAC 59.875 44.000 0.00 0.00 0.00 1.89
2169 2236 8.928733 CCCTGAAAAACAAATATGACATTCTTG 58.071 33.333 0.00 0.60 0.00 3.02
2221 2317 3.539604 ACTGATCTTGCTTCATACAGGC 58.460 45.455 0.00 0.00 0.00 4.85
2268 2364 8.681806 TCACTGACTAATCTTTCAGATAGTCTG 58.318 37.037 13.61 13.61 45.59 3.51
2315 2411 7.907214 ATCACAAATTCGCTATCCCTATTAC 57.093 36.000 0.00 0.00 0.00 1.89
2336 2432 9.545105 AACATTTAATTGTGAAGAAGCAAATCA 57.455 25.926 3.86 0.00 0.00 2.57
2351 2447 7.526850 CGCACTGCAACTTAAAACATTTAATTG 59.473 33.333 1.11 0.00 0.00 2.32
2372 2468 2.565645 CGCTAGGCCTATCCGCACT 61.566 63.158 14.30 0.00 40.77 4.40
2376 2472 0.677098 TAGAGCGCTAGGCCTATCCG 60.677 60.000 22.03 22.03 45.17 4.18
2378 2474 2.619646 GGTATAGAGCGCTAGGCCTATC 59.380 54.545 14.30 8.46 45.17 2.08
2387 2483 3.563223 TGAAGGTTAGGTATAGAGCGCT 58.437 45.455 11.27 11.27 0.00 5.92
2390 2486 5.049267 CGAGTCTGAAGGTTAGGTATAGAGC 60.049 48.000 0.00 0.00 0.00 4.09
2391 2487 6.056884 ACGAGTCTGAAGGTTAGGTATAGAG 58.943 44.000 0.00 0.00 0.00 2.43
2393 2489 6.991531 AGTACGAGTCTGAAGGTTAGGTATAG 59.008 42.308 0.00 0.00 0.00 1.31
2428 2524 5.801350 TGATTCATTTGGAAGTCGTCATC 57.199 39.130 0.00 0.00 39.30 2.92
2460 2556 6.918022 GTGAAAACCTGAAAACATCGAGAAAT 59.082 34.615 0.00 0.00 0.00 2.17
2640 2736 1.068610 CGTGATGTTTTGACGGCCAAT 60.069 47.619 2.24 0.00 34.23 3.16
2989 3089 4.855531 AGTTTGTTAAAAGGCATCACGAC 58.144 39.130 0.00 0.00 0.00 4.34
2990 3090 5.298276 AGAAGTTTGTTAAAAGGCATCACGA 59.702 36.000 0.00 0.00 0.00 4.35
2992 3092 6.273071 ACAGAAGTTTGTTAAAAGGCATCAC 58.727 36.000 0.00 0.00 0.00 3.06
3044 3189 5.425217 AGGATCAATTAAACCATGGGGAAAC 59.575 40.000 18.09 0.00 38.05 2.78
3087 3236 2.350772 GCAACAGCGCAAGAAGTACAAT 60.351 45.455 11.47 0.00 43.02 2.71
3089 3238 0.586319 GCAACAGCGCAAGAAGTACA 59.414 50.000 11.47 0.00 43.02 2.90
3328 3477 7.144722 TCTTCAAAGTTGGCACATGTATTAG 57.855 36.000 0.00 0.00 39.30 1.73
3399 3548 6.545504 AAGTTGTAGCACAATAGTTCACAG 57.454 37.500 5.26 0.00 40.59 3.66
3470 3621 6.717289 TGCAAAGGACAAGTAGGTATAACAT 58.283 36.000 0.00 0.00 0.00 2.71
3506 3657 7.179160 ACAGAAAAATCAAAAGGAGGAATAGGG 59.821 37.037 0.00 0.00 0.00 3.53
3548 3699 7.095481 CCATACTTATGAACATCCGTTGAGATG 60.095 40.741 0.09 0.09 41.36 2.90
3557 3708 4.938226 GCTAGCCCATACTTATGAACATCC 59.062 45.833 2.29 0.00 35.75 3.51
3581 3732 1.493022 ACAGTACTGGTGCCTTTTGGA 59.507 47.619 26.12 0.00 36.92 3.53
3619 3770 9.956720 CCATGCTTATTTCTACCTTTCTAATTG 57.043 33.333 0.00 0.00 0.00 2.32
3686 3837 5.471456 GCCAATCACAAAAGAAAGAGAGAGA 59.529 40.000 0.00 0.00 0.00 3.10
3690 3841 3.304659 GCGCCAATCACAAAAGAAAGAGA 60.305 43.478 0.00 0.00 0.00 3.10
3691 3842 2.982470 GCGCCAATCACAAAAGAAAGAG 59.018 45.455 0.00 0.00 0.00 2.85
3695 3849 0.039617 CGGCGCCAATCACAAAAGAA 60.040 50.000 28.98 0.00 0.00 2.52
3796 3958 6.173339 TGAGTAAATGTTGAAGTCAGGATCC 58.827 40.000 2.48 2.48 0.00 3.36
3899 4063 8.296713 TGCCAATAACAAAATCTTCTTCACTAC 58.703 33.333 0.00 0.00 0.00 2.73
4337 4507 7.984050 TGTATCTTCTTTGAGACTTCCATGATC 59.016 37.037 0.00 0.00 0.00 2.92
4476 4654 7.865385 ACAACTTTTATTGCGAAAATGCTAGAA 59.135 29.630 0.00 0.00 35.36 2.10
4787 4965 6.537301 TGTCATTTACCTCAAATATGTCGACC 59.463 38.462 14.12 0.00 34.99 4.79
4940 5118 2.564771 TGTGCAGACTGAAGAACCAAG 58.435 47.619 6.65 0.00 0.00 3.61
5026 5204 5.521735 GGTCATATTGATCACTCACTGTGTC 59.478 44.000 7.79 0.00 46.27 3.67
5074 5252 8.303876 ACCAACACCAATATAGTCAATGTTTTC 58.696 33.333 0.00 0.00 0.00 2.29
5075 5253 8.189119 ACCAACACCAATATAGTCAATGTTTT 57.811 30.769 0.00 0.00 0.00 2.43
5078 5256 6.350110 GCAACCAACACCAATATAGTCAATGT 60.350 38.462 0.00 0.00 0.00 2.71
5271 5453 8.607459 CCAAATATAGAAGATCACACAACAGTC 58.393 37.037 0.00 0.00 0.00 3.51
5272 5454 8.103305 ACCAAATATAGAAGATCACACAACAGT 58.897 33.333 0.00 0.00 0.00 3.55
5273 5455 8.498054 ACCAAATATAGAAGATCACACAACAG 57.502 34.615 0.00 0.00 0.00 3.16
5508 5723 0.884704 GCTGGAAGAAGTTGTCCGCA 60.885 55.000 11.09 0.00 36.65 5.69
5614 5829 2.093235 ACACAAGATAAGGGAGCAGAGC 60.093 50.000 0.00 0.00 0.00 4.09
5707 5922 0.773644 ATGCCCAGGACAACAGAGTT 59.226 50.000 0.00 0.00 0.00 3.01
5748 5963 7.279470 AGAAACGAAGACGATGATTTTCTAC 57.721 36.000 0.00 0.00 37.74 2.59
5795 6010 2.431683 GAGGCAACCCACAGCTCA 59.568 61.111 0.00 0.00 37.17 4.26
5898 6113 0.029267 ATCCCTGCCTCCTCCAGATT 60.029 55.000 0.00 0.00 32.03 2.40
5921 6136 2.170607 GTGTACCATGCTGGATACACCT 59.829 50.000 21.05 2.87 46.17 4.00
5942 6157 1.527793 GCGCTTACATGCAGAAACTCG 60.528 52.381 0.00 0.00 0.00 4.18
5987 6212 3.426292 GCTTTTAACTTGATCACCTCGCC 60.426 47.826 0.00 0.00 0.00 5.54
6192 6443 0.596600 CGGTATCGTCGTCCCCATTG 60.597 60.000 0.00 0.00 0.00 2.82
6201 6452 2.460918 AGAGCATTTTCGGTATCGTCG 58.539 47.619 0.00 0.00 37.69 5.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.