Multiple sequence alignment - TraesCS3A01G085100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G085100 chr3A 100.000 2399 0 0 1 2399 54936422 54938820 0.000000e+00 4431
1 TraesCS3A01G085100 chr3A 95.951 494 18 2 1 493 54930604 54931096 0.000000e+00 800
2 TraesCS3A01G085100 chr3A 85.714 721 78 12 1517 2223 55033216 55033925 0.000000e+00 737
3 TraesCS3A01G085100 chr3A 93.578 436 25 1 491 926 54931143 54931575 0.000000e+00 647
4 TraesCS3A01G085100 chr3A 86.348 293 37 3 203 493 41003894 41003603 1.380000e-82 316
5 TraesCS3A01G085100 chr3A 82.240 366 57 5 1580 1942 509541600 509541960 2.320000e-80 309
6 TraesCS3A01G085100 chr4A 94.818 521 26 1 977 1496 521300069 521300589 0.000000e+00 811
7 TraesCS3A01G085100 chr4A 94.595 518 28 0 977 1494 429503150 429503667 0.000000e+00 802
8 TraesCS3A01G085100 chr6D 92.720 522 36 2 977 1496 153175545 153175024 0.000000e+00 752
9 TraesCS3A01G085100 chr2D 92.308 520 40 0 977 1496 568089819 568089300 0.000000e+00 739
10 TraesCS3A01G085100 chr2D 92.308 520 40 0 977 1496 568095728 568095209 0.000000e+00 739
11 TraesCS3A01G085100 chr7D 92.308 520 39 1 977 1495 274861432 274860913 0.000000e+00 737
12 TraesCS3A01G085100 chr7D 91.150 113 9 1 2224 2336 565216888 565216777 4.130000e-33 152
13 TraesCS3A01G085100 chr7D 84.553 123 14 5 105 224 42522235 42522355 1.510000e-22 117
14 TraesCS3A01G085100 chr5D 92.857 504 34 2 973 1476 554940801 554940300 0.000000e+00 730
15 TraesCS3A01G085100 chr5D 91.923 520 42 0 977 1496 40892759 40892240 0.000000e+00 728
16 TraesCS3A01G085100 chr4D 90.996 522 45 2 977 1496 270689035 270689556 0.000000e+00 702
17 TraesCS3A01G085100 chr3D 93.379 438 26 3 491 926 42895107 42895543 0.000000e+00 645
18 TraesCS3A01G085100 chr3D 92.377 446 28 2 1498 1942 43008261 43008701 4.350000e-177 630
19 TraesCS3A01G085100 chr3D 88.732 497 52 3 1 497 42894572 42895064 2.640000e-169 604
20 TraesCS3A01G085100 chr3D 94.138 290 16 1 1935 2223 43008722 43009011 7.870000e-120 440
21 TraesCS3A01G085100 chr3D 82.289 367 55 5 1580 1942 388446717 388447077 2.320000e-80 309
22 TraesCS3A01G085100 chr3D 92.523 107 6 2 2224 2329 498862864 498862969 4.130000e-33 152
23 TraesCS3A01G085100 chr3D 93.671 79 5 0 2248 2326 357440757 357440679 4.190000e-23 119
24 TraesCS3A01G085100 chr3B 88.889 495 51 3 3 497 66806816 66807306 7.330000e-170 606
25 TraesCS3A01G085100 chr3B 89.670 455 34 8 1498 1940 66875211 66875664 3.460000e-158 568
26 TraesCS3A01G085100 chr3B 92.045 352 27 1 491 842 66807349 66807699 5.960000e-136 494
27 TraesCS3A01G085100 chr3B 87.081 209 21 3 1935 2142 66875711 66875914 5.160000e-57 231
28 TraesCS3A01G085100 chr3B 96.341 82 3 0 845 926 66816785 66816866 4.160000e-28 135
29 TraesCS3A01G085100 chrUn 84.576 389 58 2 102 489 75930819 75931206 3.740000e-103 385
30 TraesCS3A01G085100 chr6B 84.319 389 59 2 105 492 9980192 9979805 1.740000e-101 379
31 TraesCS3A01G085100 chr6B 89.815 108 8 3 2224 2329 21325281 21325175 4.160000e-28 135
32 TraesCS3A01G085100 chr6B 95.062 81 4 0 2246 2326 387165846 387165926 6.960000e-26 128
33 TraesCS3A01G085100 chr5B 83.960 399 51 7 103 496 672952435 672952045 1.050000e-98 370
34 TraesCS3A01G085100 chr6A 80.573 314 54 5 1635 1942 148531350 148531038 3.990000e-58 235
35 TraesCS3A01G085100 chr1D 80.505 277 45 9 213 487 477760533 477760802 1.120000e-48 204
36 TraesCS3A01G085100 chr2B 79.791 287 51 7 210 493 74209246 74208964 4.040000e-48 202
37 TraesCS3A01G085100 chr2B 91.667 96 6 2 2247 2341 521640039 521639945 5.380000e-27 132
38 TraesCS3A01G085100 chr7A 94.186 86 5 0 2246 2331 27223716 27223801 5.380000e-27 132
39 TraesCS3A01G085100 chr4B 94.048 84 5 0 2243 2326 483768831 483768914 6.960000e-26 128
40 TraesCS3A01G085100 chr7B 93.976 83 5 0 2247 2329 378724232 378724150 2.500000e-25 126


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G085100 chr3A 54936422 54938820 2398 False 4431.0 4431 100.0000 1 2399 1 chr3A.!!$F1 2398
1 TraesCS3A01G085100 chr3A 55033216 55033925 709 False 737.0 737 85.7140 1517 2223 1 chr3A.!!$F2 706
2 TraesCS3A01G085100 chr3A 54930604 54931575 971 False 723.5 800 94.7645 1 926 2 chr3A.!!$F4 925
3 TraesCS3A01G085100 chr4A 521300069 521300589 520 False 811.0 811 94.8180 977 1496 1 chr4A.!!$F2 519
4 TraesCS3A01G085100 chr4A 429503150 429503667 517 False 802.0 802 94.5950 977 1494 1 chr4A.!!$F1 517
5 TraesCS3A01G085100 chr6D 153175024 153175545 521 True 752.0 752 92.7200 977 1496 1 chr6D.!!$R1 519
6 TraesCS3A01G085100 chr2D 568089300 568089819 519 True 739.0 739 92.3080 977 1496 1 chr2D.!!$R1 519
7 TraesCS3A01G085100 chr2D 568095209 568095728 519 True 739.0 739 92.3080 977 1496 1 chr2D.!!$R2 519
8 TraesCS3A01G085100 chr7D 274860913 274861432 519 True 737.0 737 92.3080 977 1495 1 chr7D.!!$R1 518
9 TraesCS3A01G085100 chr5D 554940300 554940801 501 True 730.0 730 92.8570 973 1476 1 chr5D.!!$R2 503
10 TraesCS3A01G085100 chr5D 40892240 40892759 519 True 728.0 728 91.9230 977 1496 1 chr5D.!!$R1 519
11 TraesCS3A01G085100 chr4D 270689035 270689556 521 False 702.0 702 90.9960 977 1496 1 chr4D.!!$F1 519
12 TraesCS3A01G085100 chr3D 42894572 42895543 971 False 624.5 645 91.0555 1 926 2 chr3D.!!$F3 925
13 TraesCS3A01G085100 chr3D 43008261 43009011 750 False 535.0 630 93.2575 1498 2223 2 chr3D.!!$F4 725
14 TraesCS3A01G085100 chr3B 66806816 66807699 883 False 550.0 606 90.4670 3 842 2 chr3B.!!$F2 839
15 TraesCS3A01G085100 chr3B 66875211 66875914 703 False 399.5 568 88.3755 1498 2142 2 chr3B.!!$F3 644

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
703 751 0.106149 AATATCCAACGGCCGAGGTC 59.894 55.0 35.9 0.0 0.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2317 2810 0.108585 CGCACCTATATGGCCCAGTT 59.891 55.0 0.0 0.0 40.22 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 2.092323 GCTAGGGTTTTCATCCGCTTT 58.908 47.619 0.00 0.00 0.00 3.51
84 85 1.293924 CGCTTTAGAGGCCACATCAG 58.706 55.000 5.01 0.00 0.00 2.90
170 171 0.107703 CCTCGCTTATGTGGCCTTCA 60.108 55.000 3.32 3.67 0.00 3.02
271 273 2.230508 GACGACACTTAGATGGTGGTGA 59.769 50.000 0.00 0.00 38.83 4.02
293 295 5.939883 TGATGGTGTCTTCTCCAATAAAGTG 59.060 40.000 0.00 0.00 40.03 3.16
382 384 5.782845 AGGACTTCTTCTAGTTGTGGAGATT 59.217 40.000 0.00 0.00 0.00 2.40
384 386 5.715070 ACTTCTTCTAGTTGTGGAGATTCG 58.285 41.667 0.00 0.00 0.00 3.34
438 440 1.035932 TCCTTCGTCATCTCCGGGAC 61.036 60.000 0.00 0.00 0.00 4.46
476 478 2.126424 GCTCGGCGACTTCTCGTT 60.126 61.111 4.99 0.00 42.33 3.85
493 495 2.230508 TCGTTCGCATCCAACTAAGTCT 59.769 45.455 0.00 0.00 0.00 3.24
496 498 2.176045 TCGCATCCAACTAAGTCTGGA 58.824 47.619 3.28 3.28 45.65 3.86
497 499 2.166459 TCGCATCCAACTAAGTCTGGAG 59.834 50.000 6.35 1.69 44.82 3.86
499 501 2.237392 GCATCCAACTAAGTCTGGAGGT 59.763 50.000 11.58 0.00 44.82 3.85
500 502 3.307762 GCATCCAACTAAGTCTGGAGGTT 60.308 47.826 11.58 0.00 44.82 3.50
501 503 4.256920 CATCCAACTAAGTCTGGAGGTTG 58.743 47.826 6.35 0.00 44.82 3.77
502 504 3.583228 TCCAACTAAGTCTGGAGGTTGA 58.417 45.455 0.00 0.00 39.39 3.18
532 580 4.780021 AGTGTATCTCAAGGAGTCCATTGT 59.220 41.667 12.86 0.95 0.00 2.71
540 588 7.230747 TCTCAAGGAGTCCATTGTAATTTTCA 58.769 34.615 12.86 0.00 0.00 2.69
584 632 8.726988 TGTACTATCTGGTGTTTCTTTTAATGC 58.273 33.333 0.00 0.00 0.00 3.56
585 633 7.158099 ACTATCTGGTGTTTCTTTTAATGCC 57.842 36.000 0.00 0.00 0.00 4.40
586 634 6.719370 ACTATCTGGTGTTTCTTTTAATGCCA 59.281 34.615 0.00 0.00 0.00 4.92
587 635 5.452078 TCTGGTGTTTCTTTTAATGCCAG 57.548 39.130 0.00 0.00 42.43 4.85
588 636 4.280677 TCTGGTGTTTCTTTTAATGCCAGG 59.719 41.667 0.00 0.00 41.66 4.45
589 637 3.964031 TGGTGTTTCTTTTAATGCCAGGT 59.036 39.130 0.00 0.00 0.00 4.00
590 638 4.407296 TGGTGTTTCTTTTAATGCCAGGTT 59.593 37.500 0.00 0.00 0.00 3.50
591 639 4.988540 GGTGTTTCTTTTAATGCCAGGTTC 59.011 41.667 0.00 0.00 0.00 3.62
592 640 4.988540 GTGTTTCTTTTAATGCCAGGTTCC 59.011 41.667 0.00 0.00 0.00 3.62
593 641 4.898861 TGTTTCTTTTAATGCCAGGTTCCT 59.101 37.500 0.00 0.00 0.00 3.36
594 642 5.365314 TGTTTCTTTTAATGCCAGGTTCCTT 59.635 36.000 0.00 0.00 0.00 3.36
595 643 6.126911 TGTTTCTTTTAATGCCAGGTTCCTTT 60.127 34.615 0.00 0.00 0.00 3.11
596 644 6.493189 TTCTTTTAATGCCAGGTTCCTTTT 57.507 33.333 0.00 0.00 0.00 2.27
597 645 6.096673 TCTTTTAATGCCAGGTTCCTTTTC 57.903 37.500 0.00 0.00 0.00 2.29
598 646 4.513198 TTTAATGCCAGGTTCCTTTTCG 57.487 40.909 0.00 0.00 0.00 3.46
599 647 0.603065 AATGCCAGGTTCCTTTTCGC 59.397 50.000 0.00 0.00 0.00 4.70
600 648 0.539438 ATGCCAGGTTCCTTTTCGCA 60.539 50.000 0.00 0.00 0.00 5.10
601 649 0.753479 TGCCAGGTTCCTTTTCGCAA 60.753 50.000 0.00 0.00 0.00 4.85
602 650 0.387565 GCCAGGTTCCTTTTCGCAAA 59.612 50.000 0.00 0.00 0.00 3.68
603 651 1.202475 GCCAGGTTCCTTTTCGCAAAA 60.202 47.619 0.00 0.00 0.00 2.44
604 652 2.740256 GCCAGGTTCCTTTTCGCAAAAA 60.740 45.455 0.00 0.00 33.42 1.94
629 677 3.715871 GGCCAAGCCTTCTCCTATC 57.284 57.895 0.00 0.00 46.69 2.08
630 678 0.839946 GGCCAAGCCTTCTCCTATCA 59.160 55.000 0.00 0.00 46.69 2.15
631 679 1.212935 GGCCAAGCCTTCTCCTATCAA 59.787 52.381 0.00 0.00 46.69 2.57
632 680 2.357154 GGCCAAGCCTTCTCCTATCAAA 60.357 50.000 0.00 0.00 46.69 2.69
633 681 2.685388 GCCAAGCCTTCTCCTATCAAAC 59.315 50.000 0.00 0.00 0.00 2.93
634 682 3.282885 CCAAGCCTTCTCCTATCAAACC 58.717 50.000 0.00 0.00 0.00 3.27
635 683 3.282885 CAAGCCTTCTCCTATCAAACCC 58.717 50.000 0.00 0.00 0.00 4.11
636 684 2.852130 AGCCTTCTCCTATCAAACCCT 58.148 47.619 0.00 0.00 0.00 4.34
637 685 4.008916 AGCCTTCTCCTATCAAACCCTA 57.991 45.455 0.00 0.00 0.00 3.53
638 686 4.371681 AGCCTTCTCCTATCAAACCCTAA 58.628 43.478 0.00 0.00 0.00 2.69
639 687 4.410555 AGCCTTCTCCTATCAAACCCTAAG 59.589 45.833 0.00 0.00 0.00 2.18
640 688 4.709250 CCTTCTCCTATCAAACCCTAAGC 58.291 47.826 0.00 0.00 0.00 3.09
641 689 4.445019 CCTTCTCCTATCAAACCCTAAGCC 60.445 50.000 0.00 0.00 0.00 4.35
642 690 3.731431 TCTCCTATCAAACCCTAAGCCA 58.269 45.455 0.00 0.00 0.00 4.75
643 691 3.454812 TCTCCTATCAAACCCTAAGCCAC 59.545 47.826 0.00 0.00 0.00 5.01
644 692 2.508300 TCCTATCAAACCCTAAGCCACC 59.492 50.000 0.00 0.00 0.00 4.61
645 693 2.241176 CCTATCAAACCCTAAGCCACCA 59.759 50.000 0.00 0.00 0.00 4.17
646 694 3.117512 CCTATCAAACCCTAAGCCACCAT 60.118 47.826 0.00 0.00 0.00 3.55
647 695 2.214376 TCAAACCCTAAGCCACCATG 57.786 50.000 0.00 0.00 0.00 3.66
648 696 0.532115 CAAACCCTAAGCCACCATGC 59.468 55.000 0.00 0.00 0.00 4.06
649 697 0.965363 AAACCCTAAGCCACCATGCG 60.965 55.000 0.00 0.00 36.02 4.73
650 698 1.847798 AACCCTAAGCCACCATGCGA 61.848 55.000 0.00 0.00 36.02 5.10
651 699 1.077787 CCCTAAGCCACCATGCGAA 60.078 57.895 0.00 0.00 36.02 4.70
652 700 0.679640 CCCTAAGCCACCATGCGAAA 60.680 55.000 0.00 0.00 36.02 3.46
653 701 1.392589 CCTAAGCCACCATGCGAAAT 58.607 50.000 0.00 0.00 36.02 2.17
654 702 1.334869 CCTAAGCCACCATGCGAAATC 59.665 52.381 0.00 0.00 36.02 2.17
655 703 1.334869 CTAAGCCACCATGCGAAATCC 59.665 52.381 0.00 0.00 36.02 3.01
656 704 1.322538 AAGCCACCATGCGAAATCCC 61.323 55.000 0.00 0.00 36.02 3.85
657 705 2.051518 GCCACCATGCGAAATCCCA 61.052 57.895 0.00 0.00 0.00 4.37
658 706 1.603236 GCCACCATGCGAAATCCCAA 61.603 55.000 0.00 0.00 0.00 4.12
659 707 0.894141 CCACCATGCGAAATCCCAAA 59.106 50.000 0.00 0.00 0.00 3.28
660 708 1.274728 CCACCATGCGAAATCCCAAAA 59.725 47.619 0.00 0.00 0.00 2.44
661 709 2.336667 CACCATGCGAAATCCCAAAAC 58.663 47.619 0.00 0.00 0.00 2.43
662 710 2.029110 CACCATGCGAAATCCCAAAACT 60.029 45.455 0.00 0.00 0.00 2.66
663 711 3.192422 CACCATGCGAAATCCCAAAACTA 59.808 43.478 0.00 0.00 0.00 2.24
664 712 3.192633 ACCATGCGAAATCCCAAAACTAC 59.807 43.478 0.00 0.00 0.00 2.73
665 713 3.428862 CCATGCGAAATCCCAAAACTACC 60.429 47.826 0.00 0.00 0.00 3.18
666 714 2.164338 TGCGAAATCCCAAAACTACCC 58.836 47.619 0.00 0.00 0.00 3.69
667 715 1.475280 GCGAAATCCCAAAACTACCCC 59.525 52.381 0.00 0.00 0.00 4.95
668 716 2.097036 CGAAATCCCAAAACTACCCCC 58.903 52.381 0.00 0.00 0.00 5.40
669 717 2.555670 CGAAATCCCAAAACTACCCCCA 60.556 50.000 0.00 0.00 0.00 4.96
670 718 2.615986 AATCCCAAAACTACCCCCAC 57.384 50.000 0.00 0.00 0.00 4.61
671 719 0.708209 ATCCCAAAACTACCCCCACC 59.292 55.000 0.00 0.00 0.00 4.61
672 720 1.077805 CCCAAAACTACCCCCACCC 59.922 63.158 0.00 0.00 0.00 4.61
673 721 1.731324 CCCAAAACTACCCCCACCCA 61.731 60.000 0.00 0.00 0.00 4.51
674 722 0.188834 CCAAAACTACCCCCACCCAA 59.811 55.000 0.00 0.00 0.00 4.12
675 723 1.413227 CCAAAACTACCCCCACCCAAA 60.413 52.381 0.00 0.00 0.00 3.28
676 724 2.615391 CAAAACTACCCCCACCCAAAT 58.385 47.619 0.00 0.00 0.00 2.32
677 725 2.565391 CAAAACTACCCCCACCCAAATC 59.435 50.000 0.00 0.00 0.00 2.17
678 726 0.708209 AACTACCCCCACCCAAATCC 59.292 55.000 0.00 0.00 0.00 3.01
679 727 0.178813 ACTACCCCCACCCAAATCCT 60.179 55.000 0.00 0.00 0.00 3.24
680 728 0.258774 CTACCCCCACCCAAATCCTG 59.741 60.000 0.00 0.00 0.00 3.86
681 729 0.178828 TACCCCCACCCAAATCCTGA 60.179 55.000 0.00 0.00 0.00 3.86
682 730 1.077298 ACCCCCACCCAAATCCTGAA 61.077 55.000 0.00 0.00 0.00 3.02
683 731 0.116143 CCCCCACCCAAATCCTGAAA 59.884 55.000 0.00 0.00 0.00 2.69
684 732 1.484065 CCCCCACCCAAATCCTGAAAA 60.484 52.381 0.00 0.00 0.00 2.29
685 733 2.334023 CCCCACCCAAATCCTGAAAAA 58.666 47.619 0.00 0.00 0.00 1.94
686 734 2.912295 CCCCACCCAAATCCTGAAAAAT 59.088 45.455 0.00 0.00 0.00 1.82
687 735 4.100373 CCCCACCCAAATCCTGAAAAATA 58.900 43.478 0.00 0.00 0.00 1.40
688 736 4.721274 CCCCACCCAAATCCTGAAAAATAT 59.279 41.667 0.00 0.00 0.00 1.28
689 737 5.163311 CCCCACCCAAATCCTGAAAAATATC 60.163 44.000 0.00 0.00 0.00 1.63
690 738 5.163311 CCCACCCAAATCCTGAAAAATATCC 60.163 44.000 0.00 0.00 0.00 2.59
691 739 5.424895 CCACCCAAATCCTGAAAAATATCCA 59.575 40.000 0.00 0.00 0.00 3.41
692 740 6.070309 CCACCCAAATCCTGAAAAATATCCAA 60.070 38.462 0.00 0.00 0.00 3.53
693 741 6.818142 CACCCAAATCCTGAAAAATATCCAAC 59.182 38.462 0.00 0.00 0.00 3.77
694 742 6.042143 CCCAAATCCTGAAAAATATCCAACG 58.958 40.000 0.00 0.00 0.00 4.10
695 743 6.042143 CCAAATCCTGAAAAATATCCAACGG 58.958 40.000 0.00 0.00 0.00 4.44
696 744 4.918810 ATCCTGAAAAATATCCAACGGC 57.081 40.909 0.00 0.00 0.00 5.68
697 745 3.020984 TCCTGAAAAATATCCAACGGCC 58.979 45.455 0.00 0.00 0.00 6.13
698 746 2.223479 CCTGAAAAATATCCAACGGCCG 60.223 50.000 26.86 26.86 0.00 6.13
699 747 2.680841 CTGAAAAATATCCAACGGCCGA 59.319 45.455 35.90 10.13 0.00 5.54
700 748 2.680841 TGAAAAATATCCAACGGCCGAG 59.319 45.455 35.90 23.30 0.00 4.63
701 749 1.675552 AAAATATCCAACGGCCGAGG 58.324 50.000 35.90 30.98 0.00 4.63
702 750 0.544697 AAATATCCAACGGCCGAGGT 59.455 50.000 35.90 22.62 0.00 3.85
703 751 0.106149 AATATCCAACGGCCGAGGTC 59.894 55.000 35.90 0.00 0.00 3.85
710 758 4.812476 CGGCCGAGGTCGCATGAA 62.812 66.667 24.07 0.00 36.12 2.57
711 759 2.435938 GGCCGAGGTCGCATGAAA 60.436 61.111 0.00 0.00 38.18 2.69
712 760 2.038269 GGCCGAGGTCGCATGAAAA 61.038 57.895 0.00 0.00 38.18 2.29
713 761 1.582610 GGCCGAGGTCGCATGAAAAA 61.583 55.000 0.00 0.00 38.18 1.94
736 784 8.425577 AAAATATCGAACGACTGAAATGATCT 57.574 30.769 0.00 0.00 0.00 2.75
737 785 6.999956 ATATCGAACGACTGAAATGATCTG 57.000 37.500 0.00 0.00 0.00 2.90
738 786 3.511699 TCGAACGACTGAAATGATCTGG 58.488 45.455 0.00 0.00 0.00 3.86
739 787 3.192633 TCGAACGACTGAAATGATCTGGA 59.807 43.478 0.00 0.00 0.00 3.86
740 788 3.304559 CGAACGACTGAAATGATCTGGAC 59.695 47.826 0.00 0.00 0.00 4.02
741 789 3.252974 ACGACTGAAATGATCTGGACC 57.747 47.619 0.00 0.00 0.00 4.46
742 790 2.093447 ACGACTGAAATGATCTGGACCC 60.093 50.000 0.00 0.00 0.00 4.46
743 791 2.093500 CGACTGAAATGATCTGGACCCA 60.093 50.000 0.00 0.00 0.00 4.51
744 792 3.539604 GACTGAAATGATCTGGACCCAG 58.460 50.000 9.74 9.74 44.86 4.45
753 801 2.350057 TCTGGACCCAGAGATAGACG 57.650 55.000 14.37 0.00 46.80 4.18
754 802 0.671251 CTGGACCCAGAGATAGACGC 59.329 60.000 10.47 0.00 46.30 5.19
755 803 0.755698 TGGACCCAGAGATAGACGCC 60.756 60.000 0.00 0.00 0.00 5.68
756 804 1.465200 GGACCCAGAGATAGACGCCC 61.465 65.000 0.00 0.00 0.00 6.13
757 805 0.755698 GACCCAGAGATAGACGCCCA 60.756 60.000 0.00 0.00 0.00 5.36
758 806 1.043673 ACCCAGAGATAGACGCCCAC 61.044 60.000 0.00 0.00 0.00 4.61
760 808 1.101635 CCAGAGATAGACGCCCACGA 61.102 60.000 0.00 0.00 43.93 4.35
761 809 0.955178 CAGAGATAGACGCCCACGAT 59.045 55.000 0.00 0.00 43.93 3.73
762 810 1.338337 CAGAGATAGACGCCCACGATT 59.662 52.381 0.00 0.00 43.93 3.34
763 811 1.338337 AGAGATAGACGCCCACGATTG 59.662 52.381 0.00 0.00 43.93 2.67
764 812 0.249489 AGATAGACGCCCACGATTGC 60.249 55.000 0.00 0.00 43.93 3.56
765 813 0.529773 GATAGACGCCCACGATTGCA 60.530 55.000 0.00 0.00 43.93 4.08
766 814 0.106708 ATAGACGCCCACGATTGCAT 59.893 50.000 0.00 0.00 43.93 3.96
767 815 0.529773 TAGACGCCCACGATTGCATC 60.530 55.000 0.00 0.00 43.93 3.91
780 828 4.806225 GCATCGGCAAATCGATCG 57.194 55.556 9.36 9.36 46.59 3.69
781 829 1.205064 GCATCGGCAAATCGATCGG 59.795 57.895 16.41 0.00 46.59 4.18
782 830 1.862123 CATCGGCAAATCGATCGGG 59.138 57.895 16.41 4.02 46.59 5.14
783 831 1.961277 ATCGGCAAATCGATCGGGC 60.961 57.895 16.41 13.52 45.43 6.13
784 832 4.000557 CGGCAAATCGATCGGGCG 62.001 66.667 23.65 23.65 42.72 6.13
785 833 3.649986 GGCAAATCGATCGGGCGG 61.650 66.667 16.41 4.39 0.00 6.13
786 834 2.587753 GCAAATCGATCGGGCGGA 60.588 61.111 16.41 0.00 0.00 5.54
787 835 2.882366 GCAAATCGATCGGGCGGAC 61.882 63.158 16.41 0.00 0.00 4.79
788 836 2.279252 AAATCGATCGGGCGGACG 60.279 61.111 16.41 4.00 0.00 4.79
795 843 2.520020 TCGGGCGGACGATATGGT 60.520 61.111 0.00 0.00 38.06 3.55
796 844 2.049433 CGGGCGGACGATATGGTC 60.049 66.667 9.23 9.23 35.47 4.02
806 854 4.386867 GACGATATGGTCCAAACTCTGA 57.613 45.455 6.60 0.00 0.00 3.27
807 855 4.363999 GACGATATGGTCCAAACTCTGAG 58.636 47.826 6.60 2.45 0.00 3.35
808 856 3.769844 ACGATATGGTCCAAACTCTGAGT 59.230 43.478 4.06 4.06 0.00 3.41
809 857 4.115516 CGATATGGTCCAAACTCTGAGTG 58.884 47.826 11.71 0.00 0.00 3.51
810 858 2.867109 ATGGTCCAAACTCTGAGTGG 57.133 50.000 11.71 9.45 0.00 4.00
811 859 0.108585 TGGTCCAAACTCTGAGTGGC 59.891 55.000 11.71 0.09 32.10 5.01
812 860 0.606673 GGTCCAAACTCTGAGTGGCC 60.607 60.000 11.71 6.30 32.10 5.36
813 861 0.606673 GTCCAAACTCTGAGTGGCCC 60.607 60.000 11.71 0.35 32.10 5.80
814 862 0.768221 TCCAAACTCTGAGTGGCCCT 60.768 55.000 11.71 0.00 32.10 5.19
815 863 0.984230 CCAAACTCTGAGTGGCCCTA 59.016 55.000 11.71 0.00 0.00 3.53
816 864 1.065854 CCAAACTCTGAGTGGCCCTAG 60.066 57.143 11.71 0.00 0.00 3.02
817 865 1.625818 CAAACTCTGAGTGGCCCTAGT 59.374 52.381 11.71 0.00 0.00 2.57
818 866 1.270907 AACTCTGAGTGGCCCTAGTG 58.729 55.000 11.71 0.00 0.00 2.74
819 867 1.261238 ACTCTGAGTGGCCCTAGTGC 61.261 60.000 10.00 0.00 0.00 4.40
820 868 2.185350 CTGAGTGGCCCTAGTGCG 59.815 66.667 0.00 0.00 0.00 5.34
821 869 2.603473 TGAGTGGCCCTAGTGCGT 60.603 61.111 0.00 0.00 0.00 5.24
822 870 2.184579 GAGTGGCCCTAGTGCGTC 59.815 66.667 0.00 0.00 0.00 5.19
823 871 3.701604 GAGTGGCCCTAGTGCGTCG 62.702 68.421 0.00 0.00 0.00 5.12
824 872 4.814294 GTGGCCCTAGTGCGTCGG 62.814 72.222 0.00 0.00 0.00 4.79
836 884 3.692998 GCGTCGGCAAATCAATCAA 57.307 47.368 0.00 0.00 39.62 2.57
837 885 1.975837 GCGTCGGCAAATCAATCAAA 58.024 45.000 0.00 0.00 39.62 2.69
838 886 1.648681 GCGTCGGCAAATCAATCAAAC 59.351 47.619 0.00 0.00 39.62 2.93
839 887 1.904412 CGTCGGCAAATCAATCAAACG 59.096 47.619 0.00 0.00 0.00 3.60
840 888 2.250188 GTCGGCAAATCAATCAAACGG 58.750 47.619 0.00 0.00 0.00 4.44
841 889 0.991344 CGGCAAATCAATCAAACGGC 59.009 50.000 0.00 0.00 0.00 5.68
842 890 1.668337 CGGCAAATCAATCAAACGGCA 60.668 47.619 0.00 0.00 0.00 5.69
843 891 2.620242 GGCAAATCAATCAAACGGCAT 58.380 42.857 0.00 0.00 0.00 4.40
844 892 3.733380 CGGCAAATCAATCAAACGGCATA 60.733 43.478 0.00 0.00 0.00 3.14
845 893 4.370917 GGCAAATCAATCAAACGGCATAT 58.629 39.130 0.00 0.00 0.00 1.78
846 894 5.527951 GGCAAATCAATCAAACGGCATATA 58.472 37.500 0.00 0.00 0.00 0.86
847 895 6.158598 GGCAAATCAATCAAACGGCATATAT 58.841 36.000 0.00 0.00 0.00 0.86
848 896 6.089820 GGCAAATCAATCAAACGGCATATATG 59.910 38.462 8.45 8.45 0.00 1.78
866 914 7.588512 CATATATGCTCTAAGCTTGGAAAACC 58.411 38.462 13.95 3.71 42.97 3.27
867 915 2.514803 TGCTCTAAGCTTGGAAAACCC 58.485 47.619 13.95 1.45 42.97 4.11
868 916 2.108250 TGCTCTAAGCTTGGAAAACCCT 59.892 45.455 13.95 0.00 42.97 4.34
869 917 3.329520 TGCTCTAAGCTTGGAAAACCCTA 59.670 43.478 13.95 0.00 42.97 3.53
870 918 3.942115 GCTCTAAGCTTGGAAAACCCTAG 59.058 47.826 13.95 0.86 38.45 3.02
871 919 4.565861 GCTCTAAGCTTGGAAAACCCTAGT 60.566 45.833 13.95 0.00 39.55 2.57
872 920 5.561679 CTCTAAGCTTGGAAAACCCTAGTT 58.438 41.667 13.95 0.00 39.55 2.24
873 921 7.469930 GCTCTAAGCTTGGAAAACCCTAGTTT 61.470 42.308 13.95 0.00 42.26 2.66
874 922 6.002082 TCTAAGCTTGGAAAACCCTAGTTTC 58.998 40.000 10.46 0.00 45.54 2.78
875 923 4.455070 AGCTTGGAAAACCCTAGTTTCT 57.545 40.909 4.79 0.00 45.54 2.52
876 924 5.578157 AGCTTGGAAAACCCTAGTTTCTA 57.422 39.130 4.79 0.00 45.54 2.10
877 925 5.561679 AGCTTGGAAAACCCTAGTTTCTAG 58.438 41.667 4.79 0.00 45.54 2.43
878 926 4.156190 GCTTGGAAAACCCTAGTTTCTAGC 59.844 45.833 11.95 11.95 45.54 3.42
879 927 4.986054 TGGAAAACCCTAGTTTCTAGCA 57.014 40.909 4.79 0.00 45.54 3.49
880 928 5.514500 TGGAAAACCCTAGTTTCTAGCAT 57.486 39.130 4.79 0.00 45.54 3.79
881 929 5.497474 TGGAAAACCCTAGTTTCTAGCATC 58.503 41.667 4.79 0.00 45.54 3.91
882 930 5.250774 TGGAAAACCCTAGTTTCTAGCATCT 59.749 40.000 4.79 0.00 45.54 2.90
883 931 6.442564 TGGAAAACCCTAGTTTCTAGCATCTA 59.557 38.462 4.79 0.00 45.54 1.98
884 932 6.762187 GGAAAACCCTAGTTTCTAGCATCTAC 59.238 42.308 4.79 0.00 45.54 2.59
885 933 6.869206 AAACCCTAGTTTCTAGCATCTACA 57.131 37.500 0.00 0.00 42.67 2.74
886 934 7.439108 AAACCCTAGTTTCTAGCATCTACAT 57.561 36.000 0.00 0.00 42.67 2.29
887 935 8.548880 AAACCCTAGTTTCTAGCATCTACATA 57.451 34.615 0.00 0.00 42.67 2.29
888 936 8.548880 AACCCTAGTTTCTAGCATCTACATAA 57.451 34.615 0.00 0.00 29.61 1.90
889 937 7.953752 ACCCTAGTTTCTAGCATCTACATAAC 58.046 38.462 0.00 0.00 0.00 1.89
890 938 7.015389 ACCCTAGTTTCTAGCATCTACATAACC 59.985 40.741 0.00 0.00 0.00 2.85
891 939 7.015292 CCCTAGTTTCTAGCATCTACATAACCA 59.985 40.741 0.00 0.00 0.00 3.67
892 940 8.589338 CCTAGTTTCTAGCATCTACATAACCAT 58.411 37.037 0.00 0.00 0.00 3.55
893 941 9.416794 CTAGTTTCTAGCATCTACATAACCATG 57.583 37.037 0.00 0.00 38.21 3.66
894 942 7.220030 AGTTTCTAGCATCTACATAACCATGG 58.780 38.462 11.19 11.19 36.39 3.66
895 943 6.747414 TTCTAGCATCTACATAACCATGGT 57.253 37.500 13.00 13.00 36.39 3.55
896 944 7.849322 TTCTAGCATCTACATAACCATGGTA 57.151 36.000 20.12 7.17 36.39 3.25
897 945 8.435931 TTCTAGCATCTACATAACCATGGTAT 57.564 34.615 20.12 11.13 36.39 2.73
898 946 7.840931 TCTAGCATCTACATAACCATGGTATG 58.159 38.462 20.12 21.68 36.39 2.39
910 958 2.965147 CCATGGTATGGGTTGGAATTCC 59.035 50.000 18.17 18.17 46.86 3.01
911 959 2.838637 TGGTATGGGTTGGAATTCCC 57.161 50.000 21.90 7.52 43.67 3.97
919 967 3.680156 TGGAATTCCCAAGTGCGC 58.320 55.556 21.90 0.00 43.29 6.09
920 968 1.976474 TGGAATTCCCAAGTGCGCC 60.976 57.895 21.90 0.00 43.29 6.53
921 969 2.485122 GAATTCCCAAGTGCGCCG 59.515 61.111 4.18 0.00 0.00 6.46
922 970 3.683587 GAATTCCCAAGTGCGCCGC 62.684 63.158 4.18 0.00 0.00 6.53
935 983 2.279650 GCCGCCGGCTAAATACGA 60.280 61.111 26.68 0.00 46.69 3.43
936 984 1.884004 GCCGCCGGCTAAATACGAA 60.884 57.895 26.68 0.00 46.69 3.85
937 985 1.828331 GCCGCCGGCTAAATACGAAG 61.828 60.000 26.68 4.04 46.69 3.79
938 986 1.563173 CGCCGGCTAAATACGAAGC 59.437 57.895 26.68 0.00 38.03 3.86
946 994 4.616181 GCTAAATACGAAGCCAACATGT 57.384 40.909 0.00 0.00 32.40 3.21
947 995 4.981794 GCTAAATACGAAGCCAACATGTT 58.018 39.130 4.92 4.92 32.40 2.71
948 996 5.028375 GCTAAATACGAAGCCAACATGTTC 58.972 41.667 8.48 0.00 32.40 3.18
949 997 4.434713 AAATACGAAGCCAACATGTTCC 57.565 40.909 8.48 2.78 0.00 3.62
950 998 2.552599 TACGAAGCCAACATGTTCCA 57.447 45.000 8.48 0.00 0.00 3.53
951 999 0.951558 ACGAAGCCAACATGTTCCAC 59.048 50.000 8.48 0.83 0.00 4.02
952 1000 0.950836 CGAAGCCAACATGTTCCACA 59.049 50.000 8.48 0.00 0.00 4.17
953 1001 1.336440 CGAAGCCAACATGTTCCACAA 59.664 47.619 8.48 0.00 0.00 3.33
954 1002 2.223688 CGAAGCCAACATGTTCCACAAA 60.224 45.455 8.48 0.00 0.00 2.83
955 1003 3.736433 CGAAGCCAACATGTTCCACAAAA 60.736 43.478 8.48 0.00 0.00 2.44
956 1004 3.902881 AGCCAACATGTTCCACAAAAA 57.097 38.095 8.48 0.00 0.00 1.94
957 1005 4.420522 AGCCAACATGTTCCACAAAAAT 57.579 36.364 8.48 0.00 0.00 1.82
958 1006 4.128643 AGCCAACATGTTCCACAAAAATG 58.871 39.130 8.48 0.00 0.00 2.32
959 1007 3.250521 GCCAACATGTTCCACAAAAATGG 59.749 43.478 8.48 4.78 41.57 3.16
960 1008 4.450053 CCAACATGTTCCACAAAAATGGT 58.550 39.130 8.48 0.00 40.95 3.55
961 1009 5.605534 CCAACATGTTCCACAAAAATGGTA 58.394 37.500 8.48 0.00 40.95 3.25
962 1010 6.229733 CCAACATGTTCCACAAAAATGGTAT 58.770 36.000 8.48 0.00 40.95 2.73
963 1011 6.147492 CCAACATGTTCCACAAAAATGGTATG 59.853 38.462 8.48 0.00 40.95 2.39
964 1012 5.792741 ACATGTTCCACAAAAATGGTATGG 58.207 37.500 0.00 0.00 40.95 2.74
965 1013 4.881019 TGTTCCACAAAAATGGTATGGG 57.119 40.909 0.00 0.00 40.95 4.00
966 1014 4.227197 TGTTCCACAAAAATGGTATGGGT 58.773 39.130 0.00 0.00 40.95 4.51
967 1015 4.656112 TGTTCCACAAAAATGGTATGGGTT 59.344 37.500 0.00 0.00 40.95 4.11
968 1016 4.881019 TCCACAAAAATGGTATGGGTTG 57.119 40.909 0.00 0.00 40.95 3.77
969 1017 3.580458 TCCACAAAAATGGTATGGGTTGG 59.420 43.478 0.00 0.00 40.95 3.77
970 1018 3.580458 CCACAAAAATGGTATGGGTTGGA 59.420 43.478 0.00 0.00 34.77 3.53
971 1019 4.040952 CCACAAAAATGGTATGGGTTGGAA 59.959 41.667 0.00 0.00 34.77 3.53
972 1020 5.280419 CCACAAAAATGGTATGGGTTGGAAT 60.280 40.000 0.00 0.00 34.77 3.01
973 1021 6.237154 CACAAAAATGGTATGGGTTGGAATT 58.763 36.000 0.00 0.00 0.00 2.17
974 1022 6.371271 CACAAAAATGGTATGGGTTGGAATTC 59.629 38.462 0.00 0.00 0.00 2.17
975 1023 6.043706 ACAAAAATGGTATGGGTTGGAATTCA 59.956 34.615 7.93 0.00 0.00 2.57
1052 1100 0.904865 TGCCCTCGATGTCAAGACCT 60.905 55.000 0.00 0.00 0.00 3.85
1089 1194 1.039068 ATCTCATCTCCACCTGCTCG 58.961 55.000 0.00 0.00 0.00 5.03
1095 1200 2.281484 TCCACCTGCTCGTTTGCC 60.281 61.111 0.00 0.00 0.00 4.52
1427 1853 7.172342 TGTAACAATAACTTGCCTGTATTCCT 58.828 34.615 0.00 0.00 35.69 3.36
1432 1858 4.851639 AACTTGCCTGTATTCCTCTGAT 57.148 40.909 0.00 0.00 0.00 2.90
1462 1888 6.147473 TGAGTGGTAATATATTCAGGTGGGA 58.853 40.000 0.00 0.00 0.00 4.37
1525 1953 4.506625 GGGCTATGGGCTGTATTGTAATGA 60.507 45.833 1.86 0.00 41.46 2.57
1576 2004 7.436933 TGTGACTAGATTGATAATGTAGCCAG 58.563 38.462 0.00 0.00 38.06 4.85
1591 2019 5.364778 TGTAGCCAGTATGTCGCAATTTAT 58.635 37.500 0.00 0.00 0.00 1.40
1632 2060 4.820897 CTTAGTTCATGTACCTGCTGACA 58.179 43.478 0.00 0.00 0.00 3.58
1638 2066 0.758734 TGTACCTGCTGACACTGCTT 59.241 50.000 0.00 0.00 0.00 3.91
1661 2090 8.573885 GCTTACCTTTTTAGGTAACAAATCAGT 58.426 33.333 11.70 0.00 46.15 3.41
1688 2117 5.832221 TGACTAAGAAGGATCCTGAGAGAA 58.168 41.667 17.02 0.00 0.00 2.87
1722 2151 7.093377 CCATTTTGAATTGGAAGACCCATCTTA 60.093 37.037 0.00 0.00 45.60 2.10
1728 2157 8.281531 TGAATTGGAAGACCCATCTTATGTATT 58.718 33.333 0.00 0.00 45.60 1.89
1872 2312 5.272402 TCTACCAAGTCAGAATCCATCAGA 58.728 41.667 0.00 0.00 0.00 3.27
1894 2334 6.803320 CAGATGTTAATGCTTTCATCAAACGT 59.197 34.615 13.26 4.02 39.06 3.99
1956 2448 7.018826 GGCTTTGTTTTACCTTTGTGTTTTTC 58.981 34.615 0.00 0.00 0.00 2.29
1964 2456 2.035832 CCTTTGTGTTTTTCTCCGCCAT 59.964 45.455 0.00 0.00 0.00 4.40
1968 2460 2.034053 TGTGTTTTTCTCCGCCATTGAC 59.966 45.455 0.00 0.00 0.00 3.18
2008 2500 4.398044 TCTCAACACTTTTCCTTTCCACAC 59.602 41.667 0.00 0.00 0.00 3.82
2038 2530 4.075763 TGCACATTGTTTGTTGCAAAAC 57.924 36.364 0.00 3.59 38.52 2.43
2149 2642 5.527582 CGAACCTATGATTCTTGGGTTTAGG 59.472 44.000 17.67 9.49 39.92 2.69
2211 2704 9.993454 TCTTATATCTTCTCAATCAACCATCTG 57.007 33.333 0.00 0.00 0.00 2.90
2227 2720 5.741388 CCATCTGGTTGCAGTTATAGAAC 57.259 43.478 0.00 0.00 35.64 3.01
2229 2722 5.525378 CCATCTGGTTGCAGTTATAGAACTC 59.475 44.000 0.00 0.00 44.39 3.01
2230 2723 4.744570 TCTGGTTGCAGTTATAGAACTCG 58.255 43.478 0.00 0.00 44.39 4.18
2231 2724 4.461431 TCTGGTTGCAGTTATAGAACTCGA 59.539 41.667 0.00 0.00 44.39 4.04
2232 2725 5.127194 TCTGGTTGCAGTTATAGAACTCGAT 59.873 40.000 0.00 0.00 44.39 3.59
2233 2726 5.109210 TGGTTGCAGTTATAGAACTCGATG 58.891 41.667 0.00 0.00 44.39 3.84
2234 2727 4.508124 GGTTGCAGTTATAGAACTCGATGG 59.492 45.833 0.00 0.00 44.39 3.51
2235 2728 3.717707 TGCAGTTATAGAACTCGATGGC 58.282 45.455 0.00 1.28 44.39 4.40
2236 2729 3.384789 TGCAGTTATAGAACTCGATGGCT 59.615 43.478 0.00 0.00 44.39 4.75
2237 2730 3.738282 GCAGTTATAGAACTCGATGGCTG 59.262 47.826 0.00 0.00 44.39 4.85
2238 2731 4.499865 GCAGTTATAGAACTCGATGGCTGA 60.500 45.833 0.00 0.00 44.39 4.26
2239 2732 5.777802 CAGTTATAGAACTCGATGGCTGAT 58.222 41.667 0.00 0.00 44.39 2.90
2240 2733 6.219473 CAGTTATAGAACTCGATGGCTGATT 58.781 40.000 0.00 0.00 44.39 2.57
2241 2734 6.364706 CAGTTATAGAACTCGATGGCTGATTC 59.635 42.308 0.00 0.00 44.39 2.52
2242 2735 6.266558 AGTTATAGAACTCGATGGCTGATTCT 59.733 38.462 0.00 0.00 42.50 2.40
2243 2736 3.176552 AGAACTCGATGGCTGATTCTG 57.823 47.619 0.00 0.00 0.00 3.02
2244 2737 1.596727 GAACTCGATGGCTGATTCTGC 59.403 52.381 6.97 6.97 0.00 4.26
2245 2738 0.179062 ACTCGATGGCTGATTCTGCC 60.179 55.000 23.52 23.52 46.46 4.85
2246 2739 0.106335 CTCGATGGCTGATTCTGCCT 59.894 55.000 28.16 17.23 46.43 4.75
2247 2740 0.179065 TCGATGGCTGATTCTGCCTG 60.179 55.000 28.16 19.80 46.43 4.85
2248 2741 0.179065 CGATGGCTGATTCTGCCTGA 60.179 55.000 28.16 14.51 46.43 3.86
2249 2742 1.542767 CGATGGCTGATTCTGCCTGAT 60.543 52.381 28.16 17.91 46.43 2.90
2250 2743 2.584236 GATGGCTGATTCTGCCTGATT 58.416 47.619 28.16 14.68 46.43 2.57
2251 2744 2.048444 TGGCTGATTCTGCCTGATTC 57.952 50.000 28.16 7.86 46.43 2.52
2252 2745 1.562942 TGGCTGATTCTGCCTGATTCT 59.437 47.619 28.16 0.00 46.43 2.40
2253 2746 2.773661 TGGCTGATTCTGCCTGATTCTA 59.226 45.455 28.16 9.55 46.43 2.10
2254 2747 3.393609 TGGCTGATTCTGCCTGATTCTAT 59.606 43.478 28.16 0.00 46.43 1.98
2255 2748 3.752222 GGCTGATTCTGCCTGATTCTATG 59.248 47.826 23.14 0.00 43.62 2.23
2256 2749 3.752222 GCTGATTCTGCCTGATTCTATGG 59.248 47.826 4.30 0.00 0.00 2.74
2257 2750 4.325119 CTGATTCTGCCTGATTCTATGGG 58.675 47.826 0.00 0.00 0.00 4.00
2258 2751 3.975982 TGATTCTGCCTGATTCTATGGGA 59.024 43.478 0.00 0.00 0.00 4.37
2259 2752 4.413189 TGATTCTGCCTGATTCTATGGGAA 59.587 41.667 0.00 0.00 38.41 3.97
2260 2753 4.428294 TTCTGCCTGATTCTATGGGAAG 57.572 45.455 0.00 0.00 37.36 3.46
2261 2754 2.105477 TCTGCCTGATTCTATGGGAAGC 59.895 50.000 0.00 0.00 40.40 3.86
2262 2755 2.106166 CTGCCTGATTCTATGGGAAGCT 59.894 50.000 0.00 0.00 40.60 3.74
2263 2756 2.158711 TGCCTGATTCTATGGGAAGCTG 60.159 50.000 0.00 0.00 40.60 4.24
2264 2757 2.105477 GCCTGATTCTATGGGAAGCTGA 59.895 50.000 0.00 0.00 40.21 4.26
2265 2758 3.244840 GCCTGATTCTATGGGAAGCTGAT 60.245 47.826 0.00 0.00 40.21 2.90
2266 2759 4.749166 GCCTGATTCTATGGGAAGCTGATT 60.749 45.833 0.00 0.00 40.21 2.57
2267 2760 5.002516 CCTGATTCTATGGGAAGCTGATTC 58.997 45.833 0.00 0.00 40.21 2.52
2268 2761 5.221884 CCTGATTCTATGGGAAGCTGATTCT 60.222 44.000 5.56 0.00 40.21 2.40
2269 2762 5.618236 TGATTCTATGGGAAGCTGATTCTG 58.382 41.667 5.56 0.00 40.60 3.02
2270 2763 5.131642 TGATTCTATGGGAAGCTGATTCTGT 59.868 40.000 5.56 0.00 40.60 3.41
2271 2764 4.412796 TCTATGGGAAGCTGATTCTGTG 57.587 45.455 5.56 0.00 38.07 3.66
2272 2765 2.431954 ATGGGAAGCTGATTCTGTGG 57.568 50.000 5.56 0.00 38.07 4.17
2273 2766 0.329261 TGGGAAGCTGATTCTGTGGG 59.671 55.000 5.56 0.00 38.07 4.61
2274 2767 0.620556 GGGAAGCTGATTCTGTGGGA 59.379 55.000 5.56 0.00 38.07 4.37
2275 2768 1.004745 GGGAAGCTGATTCTGTGGGAA 59.995 52.381 5.56 0.00 38.07 3.97
2276 2769 2.363683 GGAAGCTGATTCTGTGGGAAG 58.636 52.381 5.56 0.00 38.07 3.46
2277 2770 2.290577 GGAAGCTGATTCTGTGGGAAGT 60.291 50.000 5.56 0.00 38.07 3.01
2278 2771 3.416156 GAAGCTGATTCTGTGGGAAGTT 58.584 45.455 0.00 0.00 37.36 2.66
2279 2772 3.515602 AGCTGATTCTGTGGGAAGTTT 57.484 42.857 0.00 0.00 37.36 2.66
2280 2773 3.416156 AGCTGATTCTGTGGGAAGTTTC 58.584 45.455 0.00 0.00 37.36 2.78
2281 2774 2.489722 GCTGATTCTGTGGGAAGTTTCC 59.510 50.000 2.17 2.17 46.82 3.13
2293 2786 4.607293 GGAAGTTTCCCAAAAGCTGATT 57.393 40.909 0.00 0.00 41.62 2.57
2294 2787 4.560128 GGAAGTTTCCCAAAAGCTGATTC 58.440 43.478 0.00 0.00 41.62 2.52
2295 2788 4.281941 GGAAGTTTCCCAAAAGCTGATTCT 59.718 41.667 0.00 0.00 41.62 2.40
2296 2789 4.861102 AGTTTCCCAAAAGCTGATTCTG 57.139 40.909 0.00 0.00 0.00 3.02
2297 2790 3.575687 AGTTTCCCAAAAGCTGATTCTGG 59.424 43.478 0.00 0.00 0.00 3.86
2298 2791 3.524095 TTCCCAAAAGCTGATTCTGGA 57.476 42.857 0.00 0.00 0.00 3.86
2299 2792 3.077484 TCCCAAAAGCTGATTCTGGAG 57.923 47.619 0.00 0.00 0.00 3.86
2300 2793 2.644299 TCCCAAAAGCTGATTCTGGAGA 59.356 45.455 0.00 0.00 0.00 3.71
2301 2794 3.074390 TCCCAAAAGCTGATTCTGGAGAA 59.926 43.478 0.00 0.00 38.56 2.87
2302 2795 4.021916 CCCAAAAGCTGATTCTGGAGAAT 58.978 43.478 0.00 1.36 46.54 2.40
2317 2810 8.463930 TTCTGGAGAATCAAAAGCTAAAAAGA 57.536 30.769 0.00 0.00 36.25 2.52
2318 2811 8.463930 TCTGGAGAATCAAAAGCTAAAAAGAA 57.536 30.769 0.00 0.00 36.25 2.52
2319 2812 8.352942 TCTGGAGAATCAAAAGCTAAAAAGAAC 58.647 33.333 0.00 0.00 36.25 3.01
2320 2813 8.237811 TGGAGAATCAAAAGCTAAAAAGAACT 57.762 30.769 0.00 0.00 36.25 3.01
2321 2814 8.137437 TGGAGAATCAAAAGCTAAAAAGAACTG 58.863 33.333 0.00 0.00 36.25 3.16
2322 2815 7.596621 GGAGAATCAAAAGCTAAAAAGAACTGG 59.403 37.037 0.00 0.00 36.25 4.00
2323 2816 7.436933 AGAATCAAAAGCTAAAAAGAACTGGG 58.563 34.615 0.00 0.00 0.00 4.45
2324 2817 4.944048 TCAAAAGCTAAAAAGAACTGGGC 58.056 39.130 0.00 0.00 0.00 5.36
2325 2818 4.058124 CAAAAGCTAAAAAGAACTGGGCC 58.942 43.478 0.00 0.00 0.00 5.80
2326 2819 2.675658 AGCTAAAAAGAACTGGGCCA 57.324 45.000 5.85 5.85 0.00 5.36
2327 2820 3.175438 AGCTAAAAAGAACTGGGCCAT 57.825 42.857 6.72 0.00 0.00 4.40
2328 2821 4.316025 AGCTAAAAAGAACTGGGCCATA 57.684 40.909 6.72 0.00 0.00 2.74
2329 2822 4.871822 AGCTAAAAAGAACTGGGCCATAT 58.128 39.130 6.72 0.00 0.00 1.78
2330 2823 6.013554 AGCTAAAAAGAACTGGGCCATATA 57.986 37.500 6.72 0.00 0.00 0.86
2331 2824 6.064717 AGCTAAAAAGAACTGGGCCATATAG 58.935 40.000 6.72 0.00 0.00 1.31
2332 2825 5.241728 GCTAAAAAGAACTGGGCCATATAGG 59.758 44.000 6.72 0.00 41.84 2.57
2333 2826 4.881157 AAAAGAACTGGGCCATATAGGT 57.119 40.909 6.72 0.00 40.61 3.08
2334 2827 3.864789 AAGAACTGGGCCATATAGGTG 57.135 47.619 6.72 0.00 40.61 4.00
2335 2828 1.421646 AGAACTGGGCCATATAGGTGC 59.578 52.381 6.72 0.00 40.61 5.01
2336 2829 0.108585 AACTGGGCCATATAGGTGCG 59.891 55.000 6.72 0.00 40.61 5.34
2337 2830 0.762842 ACTGGGCCATATAGGTGCGA 60.763 55.000 6.72 0.00 40.61 5.10
2338 2831 0.320771 CTGGGCCATATAGGTGCGAC 60.321 60.000 6.72 0.00 40.61 5.19
2339 2832 1.051556 TGGGCCATATAGGTGCGACA 61.052 55.000 0.00 0.00 40.61 4.35
2340 2833 0.320771 GGGCCATATAGGTGCGACAG 60.321 60.000 4.39 0.00 40.61 3.51
2341 2834 0.393077 GGCCATATAGGTGCGACAGT 59.607 55.000 0.00 0.00 40.61 3.55
2342 2835 1.502231 GCCATATAGGTGCGACAGTG 58.498 55.000 0.00 0.00 40.61 3.66
2343 2836 1.873903 GCCATATAGGTGCGACAGTGG 60.874 57.143 0.00 0.00 40.61 4.00
2344 2837 1.270305 CCATATAGGTGCGACAGTGGG 60.270 57.143 0.00 0.00 0.00 4.61
2345 2838 1.412710 CATATAGGTGCGACAGTGGGT 59.587 52.381 0.00 0.00 0.00 4.51
2346 2839 0.821517 TATAGGTGCGACAGTGGGTG 59.178 55.000 0.00 0.00 0.00 4.61
2347 2840 1.899437 ATAGGTGCGACAGTGGGTGG 61.899 60.000 0.00 0.00 0.00 4.61
2349 2842 3.936203 GTGCGACAGTGGGTGGGA 61.936 66.667 0.00 0.00 0.00 4.37
2350 2843 3.164977 TGCGACAGTGGGTGGGAA 61.165 61.111 0.00 0.00 0.00 3.97
2351 2844 2.112297 GCGACAGTGGGTGGGAAA 59.888 61.111 0.00 0.00 0.00 3.13
2352 2845 1.966451 GCGACAGTGGGTGGGAAAG 60.966 63.158 0.00 0.00 0.00 2.62
2353 2846 1.966451 CGACAGTGGGTGGGAAAGC 60.966 63.158 0.00 0.00 0.00 3.51
2354 2847 1.150536 GACAGTGGGTGGGAAAGCA 59.849 57.895 0.00 0.00 0.00 3.91
2355 2848 0.467290 GACAGTGGGTGGGAAAGCAA 60.467 55.000 0.00 0.00 0.00 3.91
2356 2849 0.468029 ACAGTGGGTGGGAAAGCAAG 60.468 55.000 0.00 0.00 0.00 4.01
2357 2850 0.468029 CAGTGGGTGGGAAAGCAAGT 60.468 55.000 0.00 0.00 0.00 3.16
2358 2851 1.145571 AGTGGGTGGGAAAGCAAGTA 58.854 50.000 0.00 0.00 0.00 2.24
2359 2852 1.497286 AGTGGGTGGGAAAGCAAGTAA 59.503 47.619 0.00 0.00 0.00 2.24
2360 2853 1.611977 GTGGGTGGGAAAGCAAGTAAC 59.388 52.381 0.00 0.00 0.00 2.50
2361 2854 1.254026 GGGTGGGAAAGCAAGTAACC 58.746 55.000 0.00 0.00 0.00 2.85
2362 2855 1.479757 GGGTGGGAAAGCAAGTAACCA 60.480 52.381 0.00 0.00 0.00 3.67
2363 2856 1.611977 GGTGGGAAAGCAAGTAACCAC 59.388 52.381 0.00 0.00 45.70 4.16
2364 2857 2.303175 GTGGGAAAGCAAGTAACCACA 58.697 47.619 6.76 0.00 45.72 4.17
2365 2858 2.293399 GTGGGAAAGCAAGTAACCACAG 59.707 50.000 6.76 0.00 45.72 3.66
2366 2859 1.886542 GGGAAAGCAAGTAACCACAGG 59.113 52.381 0.00 0.00 0.00 4.00
2367 2860 2.488347 GGGAAAGCAAGTAACCACAGGA 60.488 50.000 0.00 0.00 0.00 3.86
2368 2861 2.814336 GGAAAGCAAGTAACCACAGGAG 59.186 50.000 0.00 0.00 0.00 3.69
2369 2862 3.496160 GGAAAGCAAGTAACCACAGGAGA 60.496 47.826 0.00 0.00 0.00 3.71
2370 2863 3.857157 AAGCAAGTAACCACAGGAGAA 57.143 42.857 0.00 0.00 0.00 2.87
2371 2864 3.409026 AGCAAGTAACCACAGGAGAAG 57.591 47.619 0.00 0.00 0.00 2.85
2372 2865 1.807142 GCAAGTAACCACAGGAGAAGC 59.193 52.381 0.00 0.00 0.00 3.86
2373 2866 2.810400 GCAAGTAACCACAGGAGAAGCA 60.810 50.000 0.00 0.00 0.00 3.91
2374 2867 2.808543 CAAGTAACCACAGGAGAAGCAC 59.191 50.000 0.00 0.00 0.00 4.40
2375 2868 2.047061 AGTAACCACAGGAGAAGCACA 58.953 47.619 0.00 0.00 0.00 4.57
2376 2869 2.143925 GTAACCACAGGAGAAGCACAC 58.856 52.381 0.00 0.00 0.00 3.82
2377 2870 0.546122 AACCACAGGAGAAGCACACA 59.454 50.000 0.00 0.00 0.00 3.72
2378 2871 0.179045 ACCACAGGAGAAGCACACAC 60.179 55.000 0.00 0.00 0.00 3.82
2379 2872 0.886490 CCACAGGAGAAGCACACACC 60.886 60.000 0.00 0.00 0.00 4.16
2380 2873 0.886490 CACAGGAGAAGCACACACCC 60.886 60.000 0.00 0.00 0.00 4.61
2381 2874 1.344953 ACAGGAGAAGCACACACCCA 61.345 55.000 0.00 0.00 0.00 4.51
2382 2875 0.179020 CAGGAGAAGCACACACCCAA 60.179 55.000 0.00 0.00 0.00 4.12
2383 2876 0.773644 AGGAGAAGCACACACCCAAT 59.226 50.000 0.00 0.00 0.00 3.16
2384 2877 0.883833 GGAGAAGCACACACCCAATG 59.116 55.000 0.00 0.00 0.00 2.82
2385 2878 0.242017 GAGAAGCACACACCCAATGC 59.758 55.000 0.00 0.00 39.74 3.56
2389 2882 3.684693 GCACACACCCAATGCTTTT 57.315 47.368 0.00 0.00 36.40 2.27
2390 2883 1.952193 GCACACACCCAATGCTTTTT 58.048 45.000 0.00 0.00 36.40 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 3.388552 TTCTCTCTGATGTGGCCTCTA 57.611 47.619 3.32 0.00 0.00 2.43
84 85 3.367292 CCTGTGCACTCTCTCTTTCTCTC 60.367 52.174 19.41 0.00 0.00 3.20
170 171 4.499116 ACCCCGCCTCCATAGCCT 62.499 66.667 0.00 0.00 0.00 4.58
174 175 1.841556 GATCCACCCCGCCTCCATA 60.842 63.158 0.00 0.00 0.00 2.74
271 273 5.880901 ACACTTTATTGGAGAAGACACCAT 58.119 37.500 0.00 0.00 36.71 3.55
328 330 1.672356 CCACTCCCACAAGCTTCCG 60.672 63.158 0.00 0.00 0.00 4.30
333 335 1.898574 CCACACCACTCCCACAAGC 60.899 63.158 0.00 0.00 0.00 4.01
382 384 0.965866 AGCTCCTTGACGATCCACGA 60.966 55.000 0.00 0.00 45.77 4.35
384 386 1.066858 TGAAGCTCCTTGACGATCCAC 60.067 52.381 0.00 0.00 0.00 4.02
472 474 2.230508 AGACTTAGTTGGATGCGAACGA 59.769 45.455 0.00 0.00 0.00 3.85
476 478 2.166459 CTCCAGACTTAGTTGGATGCGA 59.834 50.000 13.66 0.00 42.32 5.10
493 495 1.760613 ACACTTCGTCTTCAACCTCCA 59.239 47.619 0.00 0.00 0.00 3.86
496 498 4.523173 TGAGATACACTTCGTCTTCAACCT 59.477 41.667 0.00 0.00 0.00 3.50
497 499 4.806330 TGAGATACACTTCGTCTTCAACC 58.194 43.478 0.00 0.00 0.00 3.77
499 501 5.243060 TCCTTGAGATACACTTCGTCTTCAA 59.757 40.000 0.00 0.00 0.00 2.69
500 502 4.765339 TCCTTGAGATACACTTCGTCTTCA 59.235 41.667 0.00 0.00 0.00 3.02
501 503 5.106078 ACTCCTTGAGATACACTTCGTCTTC 60.106 44.000 0.00 0.00 33.32 2.87
502 504 4.767928 ACTCCTTGAGATACACTTCGTCTT 59.232 41.667 0.00 0.00 33.32 3.01
511 559 6.867519 TTACAATGGACTCCTTGAGATACA 57.132 37.500 11.90 0.00 33.32 2.29
513 561 9.396022 GAAAATTACAATGGACTCCTTGAGATA 57.604 33.333 11.90 0.00 33.32 1.98
532 580 9.898152 AAAGGACCTCAACAAAAATGAAAATTA 57.102 25.926 0.00 0.00 0.00 1.40
540 588 8.706322 ATAGTACAAAGGACCTCAACAAAAAT 57.294 30.769 0.00 0.00 0.00 1.82
554 602 7.745620 AAAGAAACACCAGATAGTACAAAGG 57.254 36.000 0.00 0.00 0.00 3.11
581 629 0.539438 TGCGAAAAGGAACCTGGCAT 60.539 50.000 0.00 0.00 0.00 4.40
582 630 0.753479 TTGCGAAAAGGAACCTGGCA 60.753 50.000 0.00 0.13 0.00 4.92
583 631 0.387565 TTTGCGAAAAGGAACCTGGC 59.612 50.000 0.00 0.00 0.00 4.85
584 632 2.880963 TTTTGCGAAAAGGAACCTGG 57.119 45.000 0.00 0.00 0.00 4.45
612 660 2.685388 GTTTGATAGGAGAAGGCTTGGC 59.315 50.000 3.46 0.00 0.00 4.52
613 661 3.282885 GGTTTGATAGGAGAAGGCTTGG 58.717 50.000 3.46 0.00 0.00 3.61
614 662 3.054065 AGGGTTTGATAGGAGAAGGCTTG 60.054 47.826 3.46 0.00 0.00 4.01
615 663 3.193782 AGGGTTTGATAGGAGAAGGCTT 58.806 45.455 0.00 0.00 0.00 4.35
616 664 2.852130 AGGGTTTGATAGGAGAAGGCT 58.148 47.619 0.00 0.00 0.00 4.58
617 665 4.709250 CTTAGGGTTTGATAGGAGAAGGC 58.291 47.826 0.00 0.00 0.00 4.35
618 666 4.445019 GGCTTAGGGTTTGATAGGAGAAGG 60.445 50.000 0.00 0.00 0.00 3.46
619 667 4.164221 TGGCTTAGGGTTTGATAGGAGAAG 59.836 45.833 0.00 0.00 0.00 2.85
620 668 4.080526 GTGGCTTAGGGTTTGATAGGAGAA 60.081 45.833 0.00 0.00 0.00 2.87
621 669 3.454812 GTGGCTTAGGGTTTGATAGGAGA 59.545 47.826 0.00 0.00 0.00 3.71
622 670 3.433740 GGTGGCTTAGGGTTTGATAGGAG 60.434 52.174 0.00 0.00 0.00 3.69
623 671 2.508300 GGTGGCTTAGGGTTTGATAGGA 59.492 50.000 0.00 0.00 0.00 2.94
624 672 2.241176 TGGTGGCTTAGGGTTTGATAGG 59.759 50.000 0.00 0.00 0.00 2.57
625 673 3.644966 TGGTGGCTTAGGGTTTGATAG 57.355 47.619 0.00 0.00 0.00 2.08
626 674 3.897239 CATGGTGGCTTAGGGTTTGATA 58.103 45.455 0.00 0.00 0.00 2.15
627 675 2.738743 CATGGTGGCTTAGGGTTTGAT 58.261 47.619 0.00 0.00 0.00 2.57
628 676 1.890573 GCATGGTGGCTTAGGGTTTGA 60.891 52.381 0.00 0.00 0.00 2.69
629 677 0.532115 GCATGGTGGCTTAGGGTTTG 59.468 55.000 0.00 0.00 0.00 2.93
630 678 0.965363 CGCATGGTGGCTTAGGGTTT 60.965 55.000 0.00 0.00 0.00 3.27
631 679 1.378514 CGCATGGTGGCTTAGGGTT 60.379 57.895 0.00 0.00 0.00 4.11
632 680 1.847798 TTCGCATGGTGGCTTAGGGT 61.848 55.000 0.00 0.00 0.00 4.34
633 681 0.679640 TTTCGCATGGTGGCTTAGGG 60.680 55.000 0.00 0.00 0.00 3.53
634 682 1.334869 GATTTCGCATGGTGGCTTAGG 59.665 52.381 0.00 0.00 0.00 2.69
635 683 1.334869 GGATTTCGCATGGTGGCTTAG 59.665 52.381 0.00 0.00 0.00 2.18
636 684 1.388547 GGATTTCGCATGGTGGCTTA 58.611 50.000 0.00 0.00 0.00 3.09
637 685 1.322538 GGGATTTCGCATGGTGGCTT 61.323 55.000 0.00 0.00 0.00 4.35
638 686 1.754234 GGGATTTCGCATGGTGGCT 60.754 57.895 0.00 0.00 0.00 4.75
639 687 1.603236 TTGGGATTTCGCATGGTGGC 61.603 55.000 0.00 0.00 38.62 5.01
640 688 0.894141 TTTGGGATTTCGCATGGTGG 59.106 50.000 0.00 0.00 38.62 4.61
641 689 2.029110 AGTTTTGGGATTTCGCATGGTG 60.029 45.455 0.00 0.00 38.62 4.17
642 690 2.247358 AGTTTTGGGATTTCGCATGGT 58.753 42.857 0.00 0.00 38.62 3.55
643 691 3.428862 GGTAGTTTTGGGATTTCGCATGG 60.429 47.826 0.00 0.00 38.62 3.66
644 692 3.428862 GGGTAGTTTTGGGATTTCGCATG 60.429 47.826 0.00 0.00 38.62 4.06
645 693 2.758423 GGGTAGTTTTGGGATTTCGCAT 59.242 45.455 0.00 0.00 38.62 4.73
646 694 2.164338 GGGTAGTTTTGGGATTTCGCA 58.836 47.619 0.00 0.00 37.01 5.10
647 695 1.475280 GGGGTAGTTTTGGGATTTCGC 59.525 52.381 0.00 0.00 0.00 4.70
648 696 2.097036 GGGGGTAGTTTTGGGATTTCG 58.903 52.381 0.00 0.00 0.00 3.46
649 697 2.829720 GTGGGGGTAGTTTTGGGATTTC 59.170 50.000 0.00 0.00 0.00 2.17
650 698 2.493875 GGTGGGGGTAGTTTTGGGATTT 60.494 50.000 0.00 0.00 0.00 2.17
651 699 1.078159 GGTGGGGGTAGTTTTGGGATT 59.922 52.381 0.00 0.00 0.00 3.01
652 700 0.708209 GGTGGGGGTAGTTTTGGGAT 59.292 55.000 0.00 0.00 0.00 3.85
653 701 1.437013 GGGTGGGGGTAGTTTTGGGA 61.437 60.000 0.00 0.00 0.00 4.37
654 702 1.077805 GGGTGGGGGTAGTTTTGGG 59.922 63.158 0.00 0.00 0.00 4.12
655 703 0.188834 TTGGGTGGGGGTAGTTTTGG 59.811 55.000 0.00 0.00 0.00 3.28
656 704 2.089600 TTTGGGTGGGGGTAGTTTTG 57.910 50.000 0.00 0.00 0.00 2.44
657 705 2.493875 GGATTTGGGTGGGGGTAGTTTT 60.494 50.000 0.00 0.00 0.00 2.43
658 706 1.078159 GGATTTGGGTGGGGGTAGTTT 59.922 52.381 0.00 0.00 0.00 2.66
659 707 0.708209 GGATTTGGGTGGGGGTAGTT 59.292 55.000 0.00 0.00 0.00 2.24
660 708 0.178813 AGGATTTGGGTGGGGGTAGT 60.179 55.000 0.00 0.00 0.00 2.73
661 709 0.258774 CAGGATTTGGGTGGGGGTAG 59.741 60.000 0.00 0.00 0.00 3.18
662 710 0.178828 TCAGGATTTGGGTGGGGGTA 60.179 55.000 0.00 0.00 0.00 3.69
663 711 1.077298 TTCAGGATTTGGGTGGGGGT 61.077 55.000 0.00 0.00 0.00 4.95
664 712 0.116143 TTTCAGGATTTGGGTGGGGG 59.884 55.000 0.00 0.00 0.00 5.40
665 713 2.022718 TTTTCAGGATTTGGGTGGGG 57.977 50.000 0.00 0.00 0.00 4.96
666 714 5.163311 GGATATTTTTCAGGATTTGGGTGGG 60.163 44.000 0.00 0.00 0.00 4.61
667 715 5.424895 TGGATATTTTTCAGGATTTGGGTGG 59.575 40.000 0.00 0.00 0.00 4.61
668 716 6.543430 TGGATATTTTTCAGGATTTGGGTG 57.457 37.500 0.00 0.00 0.00 4.61
669 717 6.350949 CGTTGGATATTTTTCAGGATTTGGGT 60.351 38.462 0.00 0.00 0.00 4.51
670 718 6.042143 CGTTGGATATTTTTCAGGATTTGGG 58.958 40.000 0.00 0.00 0.00 4.12
671 719 6.042143 CCGTTGGATATTTTTCAGGATTTGG 58.958 40.000 0.00 0.00 0.00 3.28
672 720 5.519927 GCCGTTGGATATTTTTCAGGATTTG 59.480 40.000 0.00 0.00 0.00 2.32
673 721 5.395214 GGCCGTTGGATATTTTTCAGGATTT 60.395 40.000 0.00 0.00 0.00 2.17
674 722 4.099419 GGCCGTTGGATATTTTTCAGGATT 59.901 41.667 0.00 0.00 0.00 3.01
675 723 3.636764 GGCCGTTGGATATTTTTCAGGAT 59.363 43.478 0.00 0.00 0.00 3.24
676 724 3.020984 GGCCGTTGGATATTTTTCAGGA 58.979 45.455 0.00 0.00 0.00 3.86
677 725 2.223479 CGGCCGTTGGATATTTTTCAGG 60.223 50.000 19.50 0.00 0.00 3.86
678 726 2.680841 TCGGCCGTTGGATATTTTTCAG 59.319 45.455 27.15 0.00 0.00 3.02
679 727 2.680841 CTCGGCCGTTGGATATTTTTCA 59.319 45.455 27.15 0.00 0.00 2.69
680 728 2.032924 CCTCGGCCGTTGGATATTTTTC 59.967 50.000 27.15 0.00 0.00 2.29
681 729 2.021457 CCTCGGCCGTTGGATATTTTT 58.979 47.619 27.15 0.00 0.00 1.94
682 730 1.064979 ACCTCGGCCGTTGGATATTTT 60.065 47.619 34.05 16.22 0.00 1.82
683 731 0.544697 ACCTCGGCCGTTGGATATTT 59.455 50.000 34.05 16.79 0.00 1.40
684 732 0.106149 GACCTCGGCCGTTGGATATT 59.894 55.000 34.05 19.04 0.00 1.28
685 733 1.746517 GACCTCGGCCGTTGGATAT 59.253 57.895 34.05 19.33 0.00 1.63
686 734 2.777972 CGACCTCGGCCGTTGGATA 61.778 63.158 34.05 13.48 35.37 2.59
687 735 4.143333 CGACCTCGGCCGTTGGAT 62.143 66.667 34.05 22.65 35.37 3.41
693 741 4.812476 TTCATGCGACCTCGGCCG 62.812 66.667 22.12 22.12 40.23 6.13
694 742 1.582610 TTTTTCATGCGACCTCGGCC 61.583 55.000 0.00 0.00 40.23 6.13
695 743 1.873165 TTTTTCATGCGACCTCGGC 59.127 52.632 0.00 0.00 40.23 5.54
710 758 8.883731 AGATCATTTCAGTCGTTCGATATTTTT 58.116 29.630 0.00 0.00 0.00 1.94
711 759 8.331022 CAGATCATTTCAGTCGTTCGATATTTT 58.669 33.333 0.00 0.00 0.00 1.82
712 760 7.042456 CCAGATCATTTCAGTCGTTCGATATTT 60.042 37.037 0.00 0.00 0.00 1.40
713 761 6.422100 CCAGATCATTTCAGTCGTTCGATATT 59.578 38.462 0.00 0.00 0.00 1.28
714 762 5.923114 CCAGATCATTTCAGTCGTTCGATAT 59.077 40.000 0.00 0.00 0.00 1.63
715 763 5.067283 TCCAGATCATTTCAGTCGTTCGATA 59.933 40.000 0.00 0.00 0.00 2.92
716 764 4.115516 CCAGATCATTTCAGTCGTTCGAT 58.884 43.478 0.00 0.00 0.00 3.59
717 765 3.192633 TCCAGATCATTTCAGTCGTTCGA 59.807 43.478 0.00 0.00 0.00 3.71
718 766 3.304559 GTCCAGATCATTTCAGTCGTTCG 59.695 47.826 0.00 0.00 0.00 3.95
719 767 3.619038 GGTCCAGATCATTTCAGTCGTTC 59.381 47.826 0.00 0.00 0.00 3.95
720 768 3.600388 GGTCCAGATCATTTCAGTCGTT 58.400 45.455 0.00 0.00 0.00 3.85
721 769 2.093447 GGGTCCAGATCATTTCAGTCGT 60.093 50.000 0.00 0.00 0.00 4.34
722 770 2.093500 TGGGTCCAGATCATTTCAGTCG 60.093 50.000 0.00 0.00 0.00 4.18
723 771 3.198635 TCTGGGTCCAGATCATTTCAGTC 59.801 47.826 15.14 0.00 46.80 3.51
724 772 3.184628 TCTGGGTCCAGATCATTTCAGT 58.815 45.455 15.14 0.00 46.80 3.41
725 773 3.920231 TCTGGGTCCAGATCATTTCAG 57.080 47.619 15.14 0.00 46.80 3.02
735 783 0.671251 GCGTCTATCTCTGGGTCCAG 59.329 60.000 10.62 10.62 44.86 3.86
736 784 0.755698 GGCGTCTATCTCTGGGTCCA 60.756 60.000 0.00 0.00 0.00 4.02
737 785 1.465200 GGGCGTCTATCTCTGGGTCC 61.465 65.000 0.00 0.00 0.00 4.46
738 786 0.755698 TGGGCGTCTATCTCTGGGTC 60.756 60.000 0.00 0.00 0.00 4.46
739 787 1.043673 GTGGGCGTCTATCTCTGGGT 61.044 60.000 0.00 0.00 0.00 4.51
740 788 1.742768 GTGGGCGTCTATCTCTGGG 59.257 63.158 0.00 0.00 0.00 4.45
741 789 1.101635 TCGTGGGCGTCTATCTCTGG 61.102 60.000 0.00 0.00 39.49 3.86
742 790 0.955178 ATCGTGGGCGTCTATCTCTG 59.045 55.000 0.00 0.00 39.49 3.35
743 791 1.338337 CAATCGTGGGCGTCTATCTCT 59.662 52.381 0.00 0.00 39.49 3.10
744 792 1.772182 CAATCGTGGGCGTCTATCTC 58.228 55.000 0.00 0.00 39.49 2.75
745 793 0.249489 GCAATCGTGGGCGTCTATCT 60.249 55.000 0.00 0.00 39.49 1.98
746 794 0.529773 TGCAATCGTGGGCGTCTATC 60.530 55.000 0.00 0.00 39.49 2.08
747 795 0.106708 ATGCAATCGTGGGCGTCTAT 59.893 50.000 0.00 0.00 39.49 1.98
748 796 0.529773 GATGCAATCGTGGGCGTCTA 60.530 55.000 0.00 0.00 41.64 2.59
749 797 1.815421 GATGCAATCGTGGGCGTCT 60.815 57.895 0.00 0.00 41.64 4.18
750 798 2.709475 GATGCAATCGTGGGCGTC 59.291 61.111 0.00 0.00 38.70 5.19
766 814 2.587753 GCCCGATCGATTTGCCGA 60.588 61.111 18.66 0.00 43.16 5.54
767 815 4.000557 CGCCCGATCGATTTGCCG 62.001 66.667 18.66 5.72 0.00 5.69
768 816 3.649986 CCGCCCGATCGATTTGCC 61.650 66.667 18.66 0.00 0.00 4.52
769 817 2.587753 TCCGCCCGATCGATTTGC 60.588 61.111 18.66 12.27 0.00 3.68
770 818 2.585869 CGTCCGCCCGATCGATTTG 61.586 63.158 18.66 3.11 0.00 2.32
771 819 2.083835 ATCGTCCGCCCGATCGATTT 62.084 55.000 18.66 0.00 43.74 2.17
772 820 1.239296 TATCGTCCGCCCGATCGATT 61.239 55.000 18.66 8.60 43.74 3.34
773 821 1.030488 ATATCGTCCGCCCGATCGAT 61.030 55.000 18.66 17.71 43.74 3.59
774 822 1.673337 ATATCGTCCGCCCGATCGA 60.673 57.895 18.66 0.00 43.74 3.59
775 823 1.514228 CATATCGTCCGCCCGATCG 60.514 63.158 8.51 8.51 43.74 3.69
776 824 1.153823 CCATATCGTCCGCCCGATC 60.154 63.158 10.19 0.00 43.74 3.69
778 826 2.520020 ACCATATCGTCCGCCCGA 60.520 61.111 0.00 0.00 41.73 5.14
779 827 2.049433 GACCATATCGTCCGCCCG 60.049 66.667 0.00 0.00 0.00 6.13
780 828 2.342648 GGACCATATCGTCCGCCC 59.657 66.667 3.57 0.00 42.88 6.13
785 833 4.142138 ACTCAGAGTTTGGACCATATCGTC 60.142 45.833 0.00 0.00 0.00 4.20
786 834 3.769844 ACTCAGAGTTTGGACCATATCGT 59.230 43.478 0.00 0.00 0.00 3.73
787 835 4.115516 CACTCAGAGTTTGGACCATATCG 58.884 47.826 0.00 0.00 0.00 2.92
788 836 4.446371 CCACTCAGAGTTTGGACCATATC 58.554 47.826 0.00 0.00 31.39 1.63
789 837 3.370953 GCCACTCAGAGTTTGGACCATAT 60.371 47.826 10.68 0.00 31.39 1.78
790 838 2.027192 GCCACTCAGAGTTTGGACCATA 60.027 50.000 10.68 0.00 31.39 2.74
791 839 1.271597 GCCACTCAGAGTTTGGACCAT 60.272 52.381 10.68 0.00 31.39 3.55
792 840 0.108585 GCCACTCAGAGTTTGGACCA 59.891 55.000 10.68 0.00 31.39 4.02
793 841 0.606673 GGCCACTCAGAGTTTGGACC 60.607 60.000 10.68 7.68 31.41 4.46
794 842 0.606673 GGGCCACTCAGAGTTTGGAC 60.607 60.000 4.39 7.70 37.75 4.02
795 843 0.768221 AGGGCCACTCAGAGTTTGGA 60.768 55.000 6.18 0.00 31.39 3.53
796 844 0.984230 TAGGGCCACTCAGAGTTTGG 59.016 55.000 6.18 1.11 0.00 3.28
797 845 1.625818 ACTAGGGCCACTCAGAGTTTG 59.374 52.381 6.18 0.00 0.00 2.93
798 846 1.625818 CACTAGGGCCACTCAGAGTTT 59.374 52.381 6.18 0.00 0.00 2.66
799 847 1.270907 CACTAGGGCCACTCAGAGTT 58.729 55.000 6.18 0.00 0.00 3.01
800 848 1.261238 GCACTAGGGCCACTCAGAGT 61.261 60.000 5.37 0.00 0.00 3.24
801 849 1.519719 GCACTAGGGCCACTCAGAG 59.480 63.158 5.37 0.00 0.00 3.35
802 850 2.351244 CGCACTAGGGCCACTCAGA 61.351 63.158 12.39 0.00 0.00 3.27
803 851 2.185350 CGCACTAGGGCCACTCAG 59.815 66.667 12.39 0.00 0.00 3.35
804 852 2.603473 ACGCACTAGGGCCACTCA 60.603 61.111 12.39 0.00 0.00 3.41
805 853 2.184579 GACGCACTAGGGCCACTC 59.815 66.667 12.39 0.00 0.00 3.51
806 854 3.760035 CGACGCACTAGGGCCACT 61.760 66.667 12.39 1.30 0.00 4.00
807 855 4.814294 CCGACGCACTAGGGCCAC 62.814 72.222 12.39 4.62 0.00 5.01
817 865 0.877743 TTGATTGATTTGCCGACGCA 59.122 45.000 0.00 0.00 45.49 5.24
818 866 1.648681 GTTTGATTGATTTGCCGACGC 59.351 47.619 0.00 0.00 0.00 5.19
819 867 1.904412 CGTTTGATTGATTTGCCGACG 59.096 47.619 0.00 0.00 0.00 5.12
820 868 2.250188 CCGTTTGATTGATTTGCCGAC 58.750 47.619 0.00 0.00 0.00 4.79
821 869 1.402194 GCCGTTTGATTGATTTGCCGA 60.402 47.619 0.00 0.00 0.00 5.54
822 870 0.991344 GCCGTTTGATTGATTTGCCG 59.009 50.000 0.00 0.00 0.00 5.69
823 871 2.077413 TGCCGTTTGATTGATTTGCC 57.923 45.000 0.00 0.00 0.00 4.52
824 872 7.041187 CATATATGCCGTTTGATTGATTTGC 57.959 36.000 0.00 0.00 0.00 3.68
840 888 7.786349 GGTTTTCCAAGCTTAGAGCATATATGC 60.786 40.741 27.02 27.02 46.10 3.14
841 889 7.308830 GGGTTTTCCAAGCTTAGAGCATATATG 60.309 40.741 8.45 8.45 42.54 1.78
842 890 6.717084 GGGTTTTCCAAGCTTAGAGCATATAT 59.283 38.462 0.00 0.00 42.54 0.86
843 891 6.062095 GGGTTTTCCAAGCTTAGAGCATATA 58.938 40.000 0.00 0.00 42.54 0.86
844 892 4.889995 GGGTTTTCCAAGCTTAGAGCATAT 59.110 41.667 0.00 0.00 42.54 1.78
845 893 4.018415 AGGGTTTTCCAAGCTTAGAGCATA 60.018 41.667 0.00 0.00 42.54 3.14
846 894 3.092301 GGGTTTTCCAAGCTTAGAGCAT 58.908 45.455 0.00 0.00 42.54 3.79
847 895 2.108250 AGGGTTTTCCAAGCTTAGAGCA 59.892 45.455 0.00 0.00 42.54 4.26
848 896 2.796557 AGGGTTTTCCAAGCTTAGAGC 58.203 47.619 0.00 0.00 41.18 4.09
849 897 5.167303 ACTAGGGTTTTCCAAGCTTAGAG 57.833 43.478 0.00 0.00 40.72 2.43
850 898 5.578157 AACTAGGGTTTTCCAAGCTTAGA 57.422 39.130 0.00 0.00 40.72 2.10
851 899 6.004574 AGAAACTAGGGTTTTCCAAGCTTAG 58.995 40.000 0.00 0.00 44.58 2.18
852 900 5.948842 AGAAACTAGGGTTTTCCAAGCTTA 58.051 37.500 0.00 0.00 44.58 3.09
853 901 4.804597 AGAAACTAGGGTTTTCCAAGCTT 58.195 39.130 0.00 0.00 44.58 3.74
854 902 4.455070 AGAAACTAGGGTTTTCCAAGCT 57.545 40.909 0.00 0.00 44.58 3.74
855 903 4.156190 GCTAGAAACTAGGGTTTTCCAAGC 59.844 45.833 0.00 10.74 44.58 4.01
856 904 5.313712 TGCTAGAAACTAGGGTTTTCCAAG 58.686 41.667 0.00 0.00 44.58 3.61
857 905 5.313280 TGCTAGAAACTAGGGTTTTCCAA 57.687 39.130 0.00 0.00 44.58 3.53
858 906 4.986054 TGCTAGAAACTAGGGTTTTCCA 57.014 40.909 0.00 0.00 44.58 3.53
859 907 5.746284 AGATGCTAGAAACTAGGGTTTTCC 58.254 41.667 0.00 0.00 44.58 3.13
860 908 7.328737 TGTAGATGCTAGAAACTAGGGTTTTC 58.671 38.462 0.00 0.00 44.58 2.29
861 909 7.253905 TGTAGATGCTAGAAACTAGGGTTTT 57.746 36.000 0.00 0.00 44.58 2.43
862 910 6.869206 TGTAGATGCTAGAAACTAGGGTTT 57.131 37.500 0.00 0.00 46.85 3.27
863 911 8.422566 GTTATGTAGATGCTAGAAACTAGGGTT 58.577 37.037 0.00 0.00 37.24 4.11
864 912 7.015389 GGTTATGTAGATGCTAGAAACTAGGGT 59.985 40.741 0.00 0.00 0.00 4.34
865 913 7.015292 TGGTTATGTAGATGCTAGAAACTAGGG 59.985 40.741 0.00 0.00 0.00 3.53
866 914 7.952671 TGGTTATGTAGATGCTAGAAACTAGG 58.047 38.462 0.00 0.00 0.00 3.02
867 915 9.416794 CATGGTTATGTAGATGCTAGAAACTAG 57.583 37.037 0.00 0.00 0.00 2.57
868 916 8.367911 CCATGGTTATGTAGATGCTAGAAACTA 58.632 37.037 2.57 0.00 32.21 2.24
869 917 7.147479 ACCATGGTTATGTAGATGCTAGAAACT 60.147 37.037 13.00 0.00 32.21 2.66
870 918 6.992715 ACCATGGTTATGTAGATGCTAGAAAC 59.007 38.462 13.00 0.00 32.21 2.78
871 919 7.136822 ACCATGGTTATGTAGATGCTAGAAA 57.863 36.000 13.00 0.00 32.21 2.52
872 920 6.747414 ACCATGGTTATGTAGATGCTAGAA 57.253 37.500 13.00 0.00 32.21 2.10
873 921 7.093333 CCATACCATGGTTATGTAGATGCTAGA 60.093 40.741 25.38 0.00 45.54 2.43
874 922 7.044181 CCATACCATGGTTATGTAGATGCTAG 58.956 42.308 25.38 2.60 45.54 3.42
875 923 6.946340 CCATACCATGGTTATGTAGATGCTA 58.054 40.000 25.38 0.00 45.54 3.49
876 924 5.809001 CCATACCATGGTTATGTAGATGCT 58.191 41.667 25.38 0.00 45.54 3.79
884 932 9.094128 GGAATTCCAACCCATACCATGGTTATG 62.094 44.444 25.38 21.52 41.56 1.90
885 933 7.149874 GGAATTCCAACCCATACCATGGTTAT 61.150 42.308 25.38 11.60 41.56 1.89
886 934 5.870780 GGAATTCCAACCCATACCATGGTTA 60.871 44.000 25.38 9.62 41.56 2.85
887 935 5.122932 GGAATTCCAACCCATACCATGGTT 61.123 45.833 25.38 8.28 41.56 3.67
888 936 3.629796 GGAATTCCAACCCATACCATGGT 60.630 47.826 23.55 23.55 41.56 3.55
889 937 2.965147 GGAATTCCAACCCATACCATGG 59.035 50.000 20.04 11.19 42.24 3.66
890 938 2.965147 GGGAATTCCAACCCATACCATG 59.035 50.000 25.67 0.00 44.96 3.66
891 939 3.328535 GGGAATTCCAACCCATACCAT 57.671 47.619 25.67 0.00 44.96 3.55
892 940 2.838637 GGGAATTCCAACCCATACCA 57.161 50.000 25.67 0.00 44.96 3.25
902 950 1.976474 GGCGCACTTGGGAATTCCA 60.976 57.895 25.67 9.48 45.43 3.53
903 951 2.885113 GGCGCACTTGGGAATTCC 59.115 61.111 16.74 16.74 0.00 3.01
904 952 2.485122 CGGCGCACTTGGGAATTC 59.515 61.111 10.83 0.00 0.00 2.17
905 953 3.747976 GCGGCGCACTTGGGAATT 61.748 61.111 29.21 0.00 0.00 2.17
919 967 1.828331 GCTTCGTATTTAGCCGGCGG 61.828 60.000 24.35 24.35 0.00 6.13
920 968 1.563173 GCTTCGTATTTAGCCGGCG 59.437 57.895 23.20 4.58 0.00 6.46
921 969 1.939597 GGCTTCGTATTTAGCCGGC 59.060 57.895 21.89 21.89 46.65 6.13
925 973 4.616181 ACATGTTGGCTTCGTATTTAGC 57.384 40.909 0.00 0.00 36.66 3.09
926 974 5.123186 TGGAACATGTTGGCTTCGTATTTAG 59.877 40.000 17.58 0.00 0.00 1.85
927 975 5.004448 TGGAACATGTTGGCTTCGTATTTA 58.996 37.500 17.58 0.00 0.00 1.40
928 976 3.823873 TGGAACATGTTGGCTTCGTATTT 59.176 39.130 17.58 0.00 0.00 1.40
929 977 3.190535 GTGGAACATGTTGGCTTCGTATT 59.809 43.478 17.58 0.00 44.52 1.89
930 978 2.747446 GTGGAACATGTTGGCTTCGTAT 59.253 45.455 17.58 0.00 44.52 3.06
931 979 2.147958 GTGGAACATGTTGGCTTCGTA 58.852 47.619 17.58 0.00 44.52 3.43
932 980 0.951558 GTGGAACATGTTGGCTTCGT 59.048 50.000 17.58 0.00 44.52 3.85
933 981 0.950836 TGTGGAACATGTTGGCTTCG 59.049 50.000 17.58 0.00 45.67 3.79
945 993 4.882842 ACCCATACCATTTTTGTGGAAC 57.117 40.909 0.00 0.00 42.02 3.62
946 994 4.040952 CCAACCCATACCATTTTTGTGGAA 59.959 41.667 0.00 0.00 42.02 3.53
947 995 3.580458 CCAACCCATACCATTTTTGTGGA 59.420 43.478 0.00 0.00 42.02 4.02
948 996 3.580458 TCCAACCCATACCATTTTTGTGG 59.420 43.478 0.00 0.00 45.04 4.17
949 997 4.881019 TCCAACCCATACCATTTTTGTG 57.119 40.909 0.00 0.00 0.00 3.33
950 998 6.043706 TGAATTCCAACCCATACCATTTTTGT 59.956 34.615 2.27 0.00 0.00 2.83
951 999 6.471146 TGAATTCCAACCCATACCATTTTTG 58.529 36.000 2.27 0.00 0.00 2.44
952 1000 6.500049 TCTGAATTCCAACCCATACCATTTTT 59.500 34.615 2.27 0.00 0.00 1.94
953 1001 6.022315 TCTGAATTCCAACCCATACCATTTT 58.978 36.000 2.27 0.00 0.00 1.82
954 1002 5.588845 TCTGAATTCCAACCCATACCATTT 58.411 37.500 2.27 0.00 0.00 2.32
955 1003 5.205517 TCTGAATTCCAACCCATACCATT 57.794 39.130 2.27 0.00 0.00 3.16
956 1004 4.879295 TCTGAATTCCAACCCATACCAT 57.121 40.909 2.27 0.00 0.00 3.55
957 1005 4.685848 CGATCTGAATTCCAACCCATACCA 60.686 45.833 2.27 0.00 0.00 3.25
958 1006 3.815401 CGATCTGAATTCCAACCCATACC 59.185 47.826 2.27 0.00 0.00 2.73
959 1007 3.815401 CCGATCTGAATTCCAACCCATAC 59.185 47.826 2.27 0.00 0.00 2.39
960 1008 3.747388 GCCGATCTGAATTCCAACCCATA 60.747 47.826 2.27 0.00 0.00 2.74
961 1009 2.936202 CCGATCTGAATTCCAACCCAT 58.064 47.619 2.27 0.00 0.00 4.00
962 1010 1.681780 GCCGATCTGAATTCCAACCCA 60.682 52.381 2.27 0.00 0.00 4.51
963 1011 1.025041 GCCGATCTGAATTCCAACCC 58.975 55.000 2.27 0.00 0.00 4.11
964 1012 2.044123 AGCCGATCTGAATTCCAACC 57.956 50.000 2.27 0.00 0.00 3.77
965 1013 5.757850 ATTTAGCCGATCTGAATTCCAAC 57.242 39.130 2.27 0.00 27.71 3.77
966 1014 5.465390 CGTATTTAGCCGATCTGAATTCCAA 59.535 40.000 2.27 0.00 33.63 3.53
967 1015 4.988540 CGTATTTAGCCGATCTGAATTCCA 59.011 41.667 2.27 0.00 33.63 3.53
968 1016 5.227908 TCGTATTTAGCCGATCTGAATTCC 58.772 41.667 2.27 0.00 33.63 3.01
969 1017 6.128795 CCTTCGTATTTAGCCGATCTGAATTC 60.129 42.308 0.00 0.00 33.63 2.17
970 1018 5.696724 CCTTCGTATTTAGCCGATCTGAATT 59.303 40.000 0.00 0.00 33.63 2.17
971 1019 5.230942 CCTTCGTATTTAGCCGATCTGAAT 58.769 41.667 0.00 0.00 35.49 2.57
972 1020 4.617959 CCTTCGTATTTAGCCGATCTGAA 58.382 43.478 0.00 0.00 32.44 3.02
973 1021 3.552273 GCCTTCGTATTTAGCCGATCTGA 60.552 47.826 0.00 0.00 32.44 3.27
974 1022 2.731976 GCCTTCGTATTTAGCCGATCTG 59.268 50.000 0.00 0.00 32.44 2.90
975 1023 2.288886 GGCCTTCGTATTTAGCCGATCT 60.289 50.000 0.00 0.00 33.18 2.75
1089 1194 2.267426 GACCAAACTTGTGTGGCAAAC 58.733 47.619 9.73 0.00 38.58 2.93
1095 1200 1.392589 AGCTGGACCAAACTTGTGTG 58.607 50.000 0.00 0.00 0.00 3.82
1184 1583 4.779475 CCACCGATGGCCAGATAC 57.221 61.111 13.05 1.54 39.82 2.24
1432 1858 9.213777 ACCTGAATATATTACCACTCAAAGAGA 57.786 33.333 0.00 0.00 33.32 3.10
1496 1923 0.988145 ACAGCCCATAGCCCAGCTAA 60.988 55.000 0.00 0.00 44.62 3.09
1525 1953 3.454082 CAGGAGCAGTCCCTAGAAAGAAT 59.546 47.826 0.00 0.00 45.26 2.40
1623 2051 0.322975 AGGTAAGCAGTGTCAGCAGG 59.677 55.000 0.00 0.00 0.00 4.85
1638 2066 7.722285 AGCACTGATTTGTTACCTAAAAAGGTA 59.278 33.333 0.06 0.06 42.99 3.08
1661 2090 4.096681 TCAGGATCCTTCTTAGTCAAGCA 58.903 43.478 13.00 0.00 0.00 3.91
1728 2157 9.681692 CTAACATCATCACATTGAACAAAGAAA 57.318 29.630 0.00 0.00 0.00 2.52
1742 2171 3.686241 TGACTGCAAGCTAACATCATCAC 59.314 43.478 0.00 0.00 37.60 3.06
1795 2234 4.142469 ACCGCCTAACATGACAAAATTAGC 60.142 41.667 0.00 0.00 0.00 3.09
1804 2244 0.390735 AACGGACCGCCTAACATGAC 60.391 55.000 15.39 0.00 0.00 3.06
1872 2312 6.922957 ACAACGTTTGATGAAAGCATTAACAT 59.077 30.769 0.00 0.00 34.11 2.71
1894 2334 4.922206 AGCAATCTGGATCCAAGTTACAA 58.078 39.130 17.00 0.00 0.00 2.41
1956 2448 1.577328 AAGTTGCGTCAATGGCGGAG 61.577 55.000 9.92 0.00 0.00 4.63
1964 2456 5.730550 AGATACTAATGGAAGTTGCGTCAA 58.269 37.500 0.00 0.00 0.00 3.18
1968 2460 5.580691 TGTTGAGATACTAATGGAAGTTGCG 59.419 40.000 0.00 0.00 0.00 4.85
2008 2500 0.956633 AACAATGTGCAGACAGCCAG 59.043 50.000 0.00 0.00 44.83 4.85
2038 2530 3.181510 GGTCAAGGCGCAGTTGTATTTAG 60.182 47.826 18.13 0.00 0.00 1.85
2135 2628 6.070251 CCCTTTTTATGCCTAAACCCAAGAAT 60.070 38.462 6.17 0.00 0.00 2.40
2211 2704 4.508124 CCATCGAGTTCTATAACTGCAACC 59.492 45.833 0.00 0.00 46.09 3.77
2223 2716 2.741228 GCAGAATCAGCCATCGAGTTCT 60.741 50.000 0.00 0.00 0.00 3.01
2224 2717 1.596727 GCAGAATCAGCCATCGAGTTC 59.403 52.381 0.00 0.00 0.00 3.01
2225 2718 1.661341 GCAGAATCAGCCATCGAGTT 58.339 50.000 0.00 0.00 0.00 3.01
2226 2719 3.376218 GCAGAATCAGCCATCGAGT 57.624 52.632 0.00 0.00 0.00 4.18
2234 2727 3.752222 CCATAGAATCAGGCAGAATCAGC 59.248 47.826 0.00 0.00 0.00 4.26
2235 2728 4.041321 TCCCATAGAATCAGGCAGAATCAG 59.959 45.833 0.00 0.00 0.00 2.90
2236 2729 3.975982 TCCCATAGAATCAGGCAGAATCA 59.024 43.478 0.00 0.00 0.00 2.57
2237 2730 4.630644 TCCCATAGAATCAGGCAGAATC 57.369 45.455 0.00 0.00 0.00 2.52
2238 2731 4.749166 GCTTCCCATAGAATCAGGCAGAAT 60.749 45.833 0.00 0.00 32.82 2.40
2239 2732 3.434167 GCTTCCCATAGAATCAGGCAGAA 60.434 47.826 0.00 0.00 32.82 3.02
2240 2733 2.105477 GCTTCCCATAGAATCAGGCAGA 59.895 50.000 0.00 0.00 32.82 4.26
2241 2734 2.106166 AGCTTCCCATAGAATCAGGCAG 59.894 50.000 0.00 0.00 32.82 4.85
2242 2735 2.130193 AGCTTCCCATAGAATCAGGCA 58.870 47.619 0.00 0.00 32.82 4.75
2243 2736 2.105477 TCAGCTTCCCATAGAATCAGGC 59.895 50.000 0.00 0.00 32.82 4.85
2244 2737 4.637387 ATCAGCTTCCCATAGAATCAGG 57.363 45.455 0.00 0.00 32.82 3.86
2245 2738 5.701750 CAGAATCAGCTTCCCATAGAATCAG 59.298 44.000 0.00 0.00 34.11 2.90
2246 2739 5.131642 ACAGAATCAGCTTCCCATAGAATCA 59.868 40.000 0.00 0.00 34.11 2.57
2247 2740 5.469421 CACAGAATCAGCTTCCCATAGAATC 59.531 44.000 0.00 0.00 34.11 2.52
2248 2741 5.374921 CACAGAATCAGCTTCCCATAGAAT 58.625 41.667 0.00 0.00 34.11 2.40
2249 2742 4.384537 CCACAGAATCAGCTTCCCATAGAA 60.385 45.833 0.00 0.00 34.11 2.10
2250 2743 3.135348 CCACAGAATCAGCTTCCCATAGA 59.865 47.826 0.00 0.00 34.11 1.98
2251 2744 3.474600 CCACAGAATCAGCTTCCCATAG 58.525 50.000 0.00 0.00 34.11 2.23
2252 2745 2.173356 CCCACAGAATCAGCTTCCCATA 59.827 50.000 0.00 0.00 34.11 2.74
2253 2746 1.064166 CCCACAGAATCAGCTTCCCAT 60.064 52.381 0.00 0.00 34.11 4.00
2254 2747 0.329261 CCCACAGAATCAGCTTCCCA 59.671 55.000 0.00 0.00 34.11 4.37
2255 2748 0.620556 TCCCACAGAATCAGCTTCCC 59.379 55.000 0.00 0.00 34.11 3.97
2256 2749 2.290577 ACTTCCCACAGAATCAGCTTCC 60.291 50.000 0.00 0.00 34.11 3.46
2257 2750 3.064900 ACTTCCCACAGAATCAGCTTC 57.935 47.619 0.00 0.00 32.82 3.86
2258 2751 3.515602 AACTTCCCACAGAATCAGCTT 57.484 42.857 0.00 0.00 32.82 3.74
2259 2752 3.416156 GAAACTTCCCACAGAATCAGCT 58.584 45.455 0.00 0.00 32.82 4.24
2260 2753 2.489722 GGAAACTTCCCACAGAATCAGC 59.510 50.000 0.00 0.00 41.62 4.26
2272 2765 4.281941 AGAATCAGCTTTTGGGAAACTTCC 59.718 41.667 0.00 0.00 46.82 3.46
2273 2766 5.225642 CAGAATCAGCTTTTGGGAAACTTC 58.774 41.667 0.00 0.00 0.00 3.01
2274 2767 4.039609 CCAGAATCAGCTTTTGGGAAACTT 59.960 41.667 0.00 0.00 35.84 2.66
2275 2768 3.575687 CCAGAATCAGCTTTTGGGAAACT 59.424 43.478 0.00 0.00 35.84 2.66
2276 2769 3.573967 TCCAGAATCAGCTTTTGGGAAAC 59.426 43.478 0.00 0.00 39.16 2.78
2277 2770 3.828451 CTCCAGAATCAGCTTTTGGGAAA 59.172 43.478 0.00 0.00 39.16 3.13
2278 2771 3.074390 TCTCCAGAATCAGCTTTTGGGAA 59.926 43.478 0.00 0.00 39.16 3.97
2279 2772 2.644299 TCTCCAGAATCAGCTTTTGGGA 59.356 45.455 0.00 0.00 39.16 4.37
2280 2773 3.077484 TCTCCAGAATCAGCTTTTGGG 57.923 47.619 0.00 0.00 39.16 4.12
2291 2784 9.082313 TCTTTTTAGCTTTTGATTCTCCAGAAT 57.918 29.630 1.22 1.22 46.54 2.40
2292 2785 8.463930 TCTTTTTAGCTTTTGATTCTCCAGAA 57.536 30.769 0.00 0.00 38.56 3.02
2293 2786 8.352942 GTTCTTTTTAGCTTTTGATTCTCCAGA 58.647 33.333 0.00 0.00 0.00 3.86
2294 2787 8.355913 AGTTCTTTTTAGCTTTTGATTCTCCAG 58.644 33.333 0.00 0.00 0.00 3.86
2295 2788 8.137437 CAGTTCTTTTTAGCTTTTGATTCTCCA 58.863 33.333 0.00 0.00 0.00 3.86
2296 2789 7.596621 CCAGTTCTTTTTAGCTTTTGATTCTCC 59.403 37.037 0.00 0.00 0.00 3.71
2297 2790 7.596621 CCCAGTTCTTTTTAGCTTTTGATTCTC 59.403 37.037 0.00 0.00 0.00 2.87
2298 2791 7.436933 CCCAGTTCTTTTTAGCTTTTGATTCT 58.563 34.615 0.00 0.00 0.00 2.40
2299 2792 6.146184 GCCCAGTTCTTTTTAGCTTTTGATTC 59.854 38.462 0.00 0.00 0.00 2.52
2300 2793 5.991606 GCCCAGTTCTTTTTAGCTTTTGATT 59.008 36.000 0.00 0.00 0.00 2.57
2301 2794 5.511373 GGCCCAGTTCTTTTTAGCTTTTGAT 60.511 40.000 0.00 0.00 0.00 2.57
2302 2795 4.202212 GGCCCAGTTCTTTTTAGCTTTTGA 60.202 41.667 0.00 0.00 0.00 2.69
2303 2796 4.058124 GGCCCAGTTCTTTTTAGCTTTTG 58.942 43.478 0.00 0.00 0.00 2.44
2304 2797 3.709141 TGGCCCAGTTCTTTTTAGCTTTT 59.291 39.130 0.00 0.00 0.00 2.27
2305 2798 3.304829 TGGCCCAGTTCTTTTTAGCTTT 58.695 40.909 0.00 0.00 0.00 3.51
2306 2799 2.957474 TGGCCCAGTTCTTTTTAGCTT 58.043 42.857 0.00 0.00 0.00 3.74
2307 2800 2.675658 TGGCCCAGTTCTTTTTAGCT 57.324 45.000 0.00 0.00 0.00 3.32
2308 2801 5.241728 CCTATATGGCCCAGTTCTTTTTAGC 59.758 44.000 0.00 0.00 0.00 3.09
2309 2802 6.263168 CACCTATATGGCCCAGTTCTTTTTAG 59.737 42.308 0.00 0.00 40.22 1.85
2310 2803 6.126409 CACCTATATGGCCCAGTTCTTTTTA 58.874 40.000 0.00 0.00 40.22 1.52
2311 2804 4.956075 CACCTATATGGCCCAGTTCTTTTT 59.044 41.667 0.00 0.00 40.22 1.94
2312 2805 4.536765 CACCTATATGGCCCAGTTCTTTT 58.463 43.478 0.00 0.00 40.22 2.27
2313 2806 3.688414 GCACCTATATGGCCCAGTTCTTT 60.688 47.826 0.00 0.00 40.22 2.52
2314 2807 2.158608 GCACCTATATGGCCCAGTTCTT 60.159 50.000 0.00 0.00 40.22 2.52
2315 2808 1.421646 GCACCTATATGGCCCAGTTCT 59.578 52.381 0.00 0.00 40.22 3.01
2316 2809 1.878102 CGCACCTATATGGCCCAGTTC 60.878 57.143 0.00 0.00 40.22 3.01
2317 2810 0.108585 CGCACCTATATGGCCCAGTT 59.891 55.000 0.00 0.00 40.22 3.16
2318 2811 0.762842 TCGCACCTATATGGCCCAGT 60.763 55.000 0.00 0.00 40.22 4.00
2319 2812 0.320771 GTCGCACCTATATGGCCCAG 60.321 60.000 0.00 0.00 40.22 4.45
2320 2813 1.051556 TGTCGCACCTATATGGCCCA 61.052 55.000 0.00 0.00 40.22 5.36
2321 2814 0.320771 CTGTCGCACCTATATGGCCC 60.321 60.000 0.00 0.00 40.22 5.80
2322 2815 0.393077 ACTGTCGCACCTATATGGCC 59.607 55.000 0.00 0.00 40.22 5.36
2323 2816 1.502231 CACTGTCGCACCTATATGGC 58.498 55.000 0.00 0.00 40.22 4.40
2324 2817 1.270305 CCCACTGTCGCACCTATATGG 60.270 57.143 0.00 0.00 42.93 2.74
2325 2818 1.412710 ACCCACTGTCGCACCTATATG 59.587 52.381 0.00 0.00 0.00 1.78
2326 2819 1.412710 CACCCACTGTCGCACCTATAT 59.587 52.381 0.00 0.00 0.00 0.86
2327 2820 0.821517 CACCCACTGTCGCACCTATA 59.178 55.000 0.00 0.00 0.00 1.31
2328 2821 1.596934 CACCCACTGTCGCACCTAT 59.403 57.895 0.00 0.00 0.00 2.57
2329 2822 2.579657 CCACCCACTGTCGCACCTA 61.580 63.158 0.00 0.00 0.00 3.08
2330 2823 3.941188 CCACCCACTGTCGCACCT 61.941 66.667 0.00 0.00 0.00 4.00
2332 2825 2.951475 TTTCCCACCCACTGTCGCAC 62.951 60.000 0.00 0.00 0.00 5.34
2333 2826 2.674563 CTTTCCCACCCACTGTCGCA 62.675 60.000 0.00 0.00 0.00 5.10
2334 2827 1.966451 CTTTCCCACCCACTGTCGC 60.966 63.158 0.00 0.00 0.00 5.19
2335 2828 1.966451 GCTTTCCCACCCACTGTCG 60.966 63.158 0.00 0.00 0.00 4.35
2336 2829 0.467290 TTGCTTTCCCACCCACTGTC 60.467 55.000 0.00 0.00 0.00 3.51
2337 2830 0.468029 CTTGCTTTCCCACCCACTGT 60.468 55.000 0.00 0.00 0.00 3.55
2338 2831 0.468029 ACTTGCTTTCCCACCCACTG 60.468 55.000 0.00 0.00 0.00 3.66
2339 2832 1.145571 TACTTGCTTTCCCACCCACT 58.854 50.000 0.00 0.00 0.00 4.00
2340 2833 1.611977 GTTACTTGCTTTCCCACCCAC 59.388 52.381 0.00 0.00 0.00 4.61
2341 2834 1.479757 GGTTACTTGCTTTCCCACCCA 60.480 52.381 0.00 0.00 0.00 4.51
2342 2835 1.254026 GGTTACTTGCTTTCCCACCC 58.746 55.000 0.00 0.00 0.00 4.61
2343 2836 1.611977 GTGGTTACTTGCTTTCCCACC 59.388 52.381 0.00 0.00 37.07 4.61
2344 2837 2.293399 CTGTGGTTACTTGCTTTCCCAC 59.707 50.000 0.00 0.00 42.08 4.61
2345 2838 2.582052 CTGTGGTTACTTGCTTTCCCA 58.418 47.619 0.00 0.00 0.00 4.37
2346 2839 1.886542 CCTGTGGTTACTTGCTTTCCC 59.113 52.381 0.00 0.00 0.00 3.97
2347 2840 2.814336 CTCCTGTGGTTACTTGCTTTCC 59.186 50.000 0.00 0.00 0.00 3.13
2348 2841 3.740115 TCTCCTGTGGTTACTTGCTTTC 58.260 45.455 0.00 0.00 0.00 2.62
2349 2842 3.857157 TCTCCTGTGGTTACTTGCTTT 57.143 42.857 0.00 0.00 0.00 3.51
2350 2843 3.744660 CTTCTCCTGTGGTTACTTGCTT 58.255 45.455 0.00 0.00 0.00 3.91
2351 2844 2.551071 GCTTCTCCTGTGGTTACTTGCT 60.551 50.000 0.00 0.00 0.00 3.91
2352 2845 1.807142 GCTTCTCCTGTGGTTACTTGC 59.193 52.381 0.00 0.00 0.00 4.01
2353 2846 2.808543 GTGCTTCTCCTGTGGTTACTTG 59.191 50.000 0.00 0.00 0.00 3.16
2354 2847 2.438021 TGTGCTTCTCCTGTGGTTACTT 59.562 45.455 0.00 0.00 0.00 2.24
2355 2848 2.047061 TGTGCTTCTCCTGTGGTTACT 58.953 47.619 0.00 0.00 0.00 2.24
2356 2849 2.143925 GTGTGCTTCTCCTGTGGTTAC 58.856 52.381 0.00 0.00 0.00 2.50
2357 2850 1.765904 TGTGTGCTTCTCCTGTGGTTA 59.234 47.619 0.00 0.00 0.00 2.85
2358 2851 0.546122 TGTGTGCTTCTCCTGTGGTT 59.454 50.000 0.00 0.00 0.00 3.67
2359 2852 0.179045 GTGTGTGCTTCTCCTGTGGT 60.179 55.000 0.00 0.00 0.00 4.16
2360 2853 0.886490 GGTGTGTGCTTCTCCTGTGG 60.886 60.000 0.00 0.00 0.00 4.17
2361 2854 0.886490 GGGTGTGTGCTTCTCCTGTG 60.886 60.000 0.00 0.00 0.00 3.66
2362 2855 1.344953 TGGGTGTGTGCTTCTCCTGT 61.345 55.000 0.00 0.00 0.00 4.00
2363 2856 0.179020 TTGGGTGTGTGCTTCTCCTG 60.179 55.000 0.00 0.00 0.00 3.86
2364 2857 0.773644 ATTGGGTGTGTGCTTCTCCT 59.226 50.000 0.00 0.00 0.00 3.69
2365 2858 0.883833 CATTGGGTGTGTGCTTCTCC 59.116 55.000 0.00 0.00 0.00 3.71
2366 2859 0.242017 GCATTGGGTGTGTGCTTCTC 59.758 55.000 0.00 0.00 36.02 2.87
2367 2860 0.178981 AGCATTGGGTGTGTGCTTCT 60.179 50.000 0.00 0.00 46.29 2.85
2368 2861 2.344535 AGCATTGGGTGTGTGCTTC 58.655 52.632 0.00 0.00 46.29 3.86
2369 2862 4.605064 AGCATTGGGTGTGTGCTT 57.395 50.000 0.00 0.00 46.29 3.91
2371 2864 1.952193 AAAAAGCATTGGGTGTGTGC 58.048 45.000 0.00 0.00 39.10 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.