Multiple sequence alignment - TraesCS3A01G083500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G083500 chr3A 100.000 5858 0 0 1 5858 53574377 53568520 0.000000e+00 10818.0
1 TraesCS3A01G083500 chr3B 91.673 2822 159 32 569 3372 65565241 65562478 0.000000e+00 3840.0
2 TraesCS3A01G083500 chr3B 90.941 2550 120 47 3368 5858 65562386 65559889 0.000000e+00 3326.0
3 TraesCS3A01G083500 chr3B 77.056 462 77 24 2535 2982 65564083 65563637 7.590000e-59 239.0
4 TraesCS3A01G083500 chr3B 75.269 279 49 13 2535 2797 756078062 756078336 1.330000e-21 115.0
5 TraesCS3A01G083500 chr3D 92.735 2051 128 9 1334 3372 42083998 42086039 0.000000e+00 2942.0
6 TraesCS3A01G083500 chr3D 87.778 1440 99 41 4454 5858 42087152 42088549 0.000000e+00 1613.0
7 TraesCS3A01G083500 chr3D 97.103 725 21 0 3368 4092 42086131 42086855 0.000000e+00 1223.0
8 TraesCS3A01G083500 chr3D 87.547 530 25 11 570 1088 42083175 42083674 5.090000e-160 575.0
9 TraesCS3A01G083500 chr3D 84.710 569 67 4 3 560 42063473 42064032 8.580000e-153 551.0
10 TraesCS3A01G083500 chr3D 86.379 301 26 5 4141 4426 42086855 42087155 1.230000e-81 315.0
11 TraesCS3A01G083500 chr3D 77.124 459 81 16 2535 2982 42084422 42084867 1.630000e-60 244.0
12 TraesCS3A01G083500 chr3D 76.590 346 60 16 71 404 495684211 495684547 2.810000e-38 171.0
13 TraesCS3A01G083500 chr3D 87.692 65 8 0 5516 5580 184381294 184381358 6.290000e-10 76.8
14 TraesCS3A01G083500 chr7A 86.598 194 25 1 1829 2021 726115169 726114976 4.600000e-51 213.0
15 TraesCS3A01G083500 chr7A 79.144 187 30 9 2612 2797 726115154 726114976 2.870000e-23 121.0
16 TraesCS3A01G083500 chr6A 79.474 190 30 9 2609 2797 60147255 60147436 6.160000e-25 126.0
17 TraesCS3A01G083500 chr6A 92.105 76 6 0 2717 2792 606415337 606415262 2.230000e-19 108.0
18 TraesCS3A01G083500 chr4D 75.458 273 48 15 2538 2797 49848037 49847771 1.330000e-21 115.0
19 TraesCS3A01G083500 chr4D 87.692 65 8 0 5516 5580 46174030 46173966 6.290000e-10 76.8
20 TraesCS3A01G083500 chr7D 87.692 65 8 0 5516 5580 561529208 561529272 6.290000e-10 76.8
21 TraesCS3A01G083500 chr2D 87.692 65 8 0 5516 5580 5086332 5086396 6.290000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G083500 chr3A 53568520 53574377 5857 True 10818.000000 10818 100.000000 1 5858 1 chr3A.!!$R1 5857
1 TraesCS3A01G083500 chr3B 65559889 65565241 5352 True 2468.333333 3840 86.556667 569 5858 3 chr3B.!!$R1 5289
2 TraesCS3A01G083500 chr3D 42083175 42088549 5374 False 1152.000000 2942 88.111000 570 5858 6 chr3D.!!$F4 5288
3 TraesCS3A01G083500 chr3D 42063473 42064032 559 False 551.000000 551 84.710000 3 560 1 chr3D.!!$F1 557

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
430 442 0.321653 GTCCGCAGACTGGTTTGGAT 60.322 55.0 4.26 0.00 40.10 3.41 F
2073 2187 0.106708 ACTTGCCGCAGTTCTCTTCA 59.893 50.0 0.00 0.00 0.00 3.02 F
2610 2724 0.390998 GCTGGTGAGCTCTTGAGACC 60.391 60.0 16.19 13.92 42.52 3.85 F
4041 4358 0.392998 GGCGGAGAAATCTTCTGGCA 60.393 55.0 9.79 0.00 40.87 4.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2364 2478 0.034059 ACAGGAAGCTGGTTCTGTCG 59.966 55.000 17.95 7.74 35.25 4.35 R
3911 4228 1.065851 TCAGCACGTAGACGAAACACA 59.934 47.619 9.41 0.00 43.02 3.72 R
4416 4748 1.338579 GCTGAGAAAGGACAGGTCAGG 60.339 57.143 1.41 0.00 36.05 3.86 R
5375 5749 0.391263 CTAAACCTCCCGCACTCCAC 60.391 60.000 0.00 0.00 0.00 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.961511 TGTCTGTCGTGCCGCCAC 62.962 66.667 0.00 0.00 38.62 5.01
27 28 4.492160 GCCGCCACGACGATGAGA 62.492 66.667 0.00 0.00 34.06 3.27
31 32 2.875485 CCACGACGATGAGACCGT 59.125 61.111 0.00 0.00 43.56 4.83
40 41 1.067669 CGATGAGACCGTCACATCCAT 59.932 52.381 24.59 10.24 40.04 3.41
47 48 0.806102 CCGTCACATCCATGTCCGAC 60.806 60.000 8.99 5.40 39.39 4.79
54 55 1.111277 ATCCATGTCCGACGATGTCA 58.889 50.000 0.00 0.00 32.09 3.58
58 59 2.270923 CATGTCCGACGATGTCAACAT 58.729 47.619 0.00 8.37 38.35 2.71
59 60 1.708822 TGTCCGACGATGTCAACATG 58.291 50.000 0.00 0.00 36.57 3.21
62 63 1.018752 CCGACGATGTCAACATGGCA 61.019 55.000 0.00 0.00 35.91 4.92
63 64 0.371301 CGACGATGTCAACATGGCAG 59.629 55.000 0.00 0.00 34.38 4.85
67 68 1.129251 CGATGTCAACATGGCAGACAC 59.871 52.381 16.10 10.81 44.15 3.67
88 89 0.458716 GGCGAGGAAGAGTAGCACAC 60.459 60.000 0.00 0.00 0.00 3.82
89 90 0.528470 GCGAGGAAGAGTAGCACACT 59.472 55.000 0.00 0.00 41.47 3.55
96 97 1.638529 AGAGTAGCACACTGGAAGCT 58.361 50.000 0.00 0.00 37.72 3.74
112 113 2.743718 CTGTCGTGGCTTGGGTCT 59.256 61.111 0.00 0.00 0.00 3.85
125 126 3.403558 GGTCTGAGGAGGGCCACC 61.404 72.222 12.67 12.67 36.29 4.61
140 141 1.296715 CACCACTCTTCCCTTCCCG 59.703 63.158 0.00 0.00 0.00 5.14
158 159 1.282248 CGCCGAAGCTTCACTTTCGA 61.282 55.000 25.47 0.00 39.29 3.71
199 200 2.183409 CTTGCCGAACATGGGGAAG 58.817 57.895 6.39 6.39 44.78 3.46
208 209 3.861341 CATGGGGAAGACATGTCGT 57.139 52.632 19.85 17.24 40.54 4.34
209 210 1.372582 CATGGGGAAGACATGTCGTG 58.627 55.000 19.32 3.48 40.54 4.35
210 211 1.066215 CATGGGGAAGACATGTCGTGA 60.066 52.381 19.32 2.57 40.54 4.35
211 212 0.608130 TGGGGAAGACATGTCGTGAG 59.392 55.000 19.32 0.00 34.09 3.51
212 213 0.895530 GGGGAAGACATGTCGTGAGA 59.104 55.000 19.32 0.00 38.16 3.27
213 214 1.275291 GGGGAAGACATGTCGTGAGAA 59.725 52.381 19.32 0.00 45.01 2.87
214 215 2.289444 GGGGAAGACATGTCGTGAGAAA 60.289 50.000 19.32 0.00 45.01 2.52
243 244 3.645286 GCGGCCGGCGATTATTTA 58.355 55.556 29.38 0.00 0.00 1.40
284 285 5.869888 GCCTAGTCCGATTATGATTTAGTGG 59.130 44.000 0.00 0.00 0.00 4.00
306 317 6.930722 GTGGAAAAATGTGATGAATTTGGTCT 59.069 34.615 0.00 0.00 0.00 3.85
319 330 9.827411 GATGAATTTGGTCTAGTTTAAGTGAAC 57.173 33.333 0.00 0.00 0.00 3.18
328 339 7.227910 GGTCTAGTTTAAGTGAACATCAACCAA 59.772 37.037 0.00 0.00 31.94 3.67
334 345 4.637483 AGTGAACATCAACCAAGTTGTG 57.363 40.909 7.30 7.62 43.23 3.33
343 354 3.066064 TCAACCAAGTTGTGTGGAATTCG 59.934 43.478 7.30 0.00 43.23 3.34
346 357 7.936359 CAACCAAGTTGTGTGGAATTCGTCC 62.936 48.000 1.45 0.00 41.41 4.79
379 390 7.798801 TCAATTTTGCTTTGAAATGTATGCAG 58.201 30.769 0.00 0.00 30.44 4.41
389 400 5.008980 TGAAATGTATGCAGTCATGGTTGA 58.991 37.500 7.08 0.00 34.22 3.18
413 424 1.270732 CCCAGCTCCTGCATCTATGTC 60.271 57.143 0.00 0.00 42.74 3.06
425 436 1.557099 TCTATGTCCGCAGACTGGTT 58.443 50.000 4.26 0.00 43.91 3.67
430 442 0.321653 GTCCGCAGACTGGTTTGGAT 60.322 55.000 4.26 0.00 40.10 3.41
443 455 2.232941 GGTTTGGATAGTCTGTGGACGA 59.767 50.000 0.00 0.00 46.29 4.20
447 459 2.230508 TGGATAGTCTGTGGACGAACAC 59.769 50.000 7.18 7.18 46.29 3.32
461 473 2.671357 GAACACCGTGCCCGTTTTGG 62.671 60.000 0.00 0.00 37.55 3.28
462 474 2.902846 CACCGTGCCCGTTTTGGA 60.903 61.111 0.00 0.00 42.00 3.53
491 503 3.926058 TTGGAGATGCCCTAAGTAACC 57.074 47.619 0.00 0.00 34.97 2.85
503 515 4.086457 CCTAAGTAACCAAACATGCCCTT 58.914 43.478 0.00 0.00 0.00 3.95
504 516 5.258051 CCTAAGTAACCAAACATGCCCTTA 58.742 41.667 0.00 0.00 0.00 2.69
512 524 5.193679 ACCAAACATGCCCTTAGTTATCTC 58.806 41.667 0.00 0.00 0.00 2.75
515 527 4.323553 ACATGCCCTTAGTTATCTCGAC 57.676 45.455 0.00 0.00 0.00 4.20
521 533 5.419788 TGCCCTTAGTTATCTCGACAACTTA 59.580 40.000 7.42 0.00 36.44 2.24
522 534 6.071221 TGCCCTTAGTTATCTCGACAACTTAA 60.071 38.462 7.42 1.98 36.44 1.85
524 536 6.755607 CCCTTAGTTATCTCGACAACTTAACC 59.244 42.308 7.42 0.00 36.44 2.85
526 538 4.171754 AGTTATCTCGACAACTTAACCGC 58.828 43.478 0.00 0.00 30.89 5.68
527 539 2.005971 ATCTCGACAACTTAACCGCC 57.994 50.000 0.00 0.00 0.00 6.13
552 564 2.109425 ACTCGAGGTAACATTTGCCC 57.891 50.000 18.41 0.00 35.85 5.36
555 567 3.016736 CTCGAGGTAACATTTGCCCATT 58.983 45.455 3.91 0.00 35.85 3.16
560 572 4.672899 AGGTAACATTTGCCCATTACACT 58.327 39.130 0.00 0.00 35.85 3.55
561 573 4.705023 AGGTAACATTTGCCCATTACACTC 59.295 41.667 0.00 0.00 35.85 3.51
562 574 4.461081 GGTAACATTTGCCCATTACACTCA 59.539 41.667 0.00 0.00 30.61 3.41
563 575 5.127031 GGTAACATTTGCCCATTACACTCAT 59.873 40.000 0.00 0.00 30.61 2.90
564 576 6.320164 GGTAACATTTGCCCATTACACTCATA 59.680 38.462 0.00 0.00 30.61 2.15
565 577 6.455360 AACATTTGCCCATTACACTCATAG 57.545 37.500 0.00 0.00 0.00 2.23
566 578 4.889409 ACATTTGCCCATTACACTCATAGG 59.111 41.667 0.00 0.00 0.00 2.57
567 579 3.576078 TTGCCCATTACACTCATAGGG 57.424 47.619 0.00 0.00 39.33 3.53
636 649 3.005050 TGCAGGAACAAGAGCTGAAATTG 59.995 43.478 0.00 0.00 0.00 2.32
637 650 3.254166 GCAGGAACAAGAGCTGAAATTGA 59.746 43.478 0.00 0.00 0.00 2.57
638 651 4.082354 GCAGGAACAAGAGCTGAAATTGAT 60.082 41.667 0.00 0.00 0.00 2.57
639 652 5.399858 CAGGAACAAGAGCTGAAATTGATG 58.600 41.667 0.00 0.00 0.00 3.07
641 654 5.537674 AGGAACAAGAGCTGAAATTGATGTT 59.462 36.000 0.00 0.00 32.89 2.71
642 655 5.860716 GGAACAAGAGCTGAAATTGATGTTC 59.139 40.000 0.00 6.74 42.71 3.18
643 656 5.039480 ACAAGAGCTGAAATTGATGTTCG 57.961 39.130 0.00 0.00 0.00 3.95
644 657 4.756642 ACAAGAGCTGAAATTGATGTTCGA 59.243 37.500 0.00 0.00 0.00 3.71
645 658 5.413833 ACAAGAGCTGAAATTGATGTTCGAT 59.586 36.000 0.00 0.00 0.00 3.59
646 659 5.731599 AGAGCTGAAATTGATGTTCGATC 57.268 39.130 0.00 0.00 0.00 3.69
647 660 5.181009 AGAGCTGAAATTGATGTTCGATCA 58.819 37.500 0.00 0.00 0.00 2.92
648 661 5.821470 AGAGCTGAAATTGATGTTCGATCAT 59.179 36.000 8.71 8.71 0.00 2.45
649 662 6.988580 AGAGCTGAAATTGATGTTCGATCATA 59.011 34.615 8.92 0.00 0.00 2.15
650 663 6.952743 AGCTGAAATTGATGTTCGATCATAC 58.047 36.000 8.92 4.47 0.00 2.39
651 664 6.539826 AGCTGAAATTGATGTTCGATCATACA 59.460 34.615 8.92 0.00 0.00 2.29
652 665 7.066163 AGCTGAAATTGATGTTCGATCATACAA 59.934 33.333 8.92 13.72 0.00 2.41
680 693 5.038651 TCCTCTAAAACCGGAAAGAAACA 57.961 39.130 9.46 0.00 0.00 2.83
682 695 4.319261 CCTCTAAAACCGGAAAGAAACACG 60.319 45.833 9.46 0.00 0.00 4.49
747 764 2.288273 CCCCGCATTTTTACCGTTCAAA 60.288 45.455 0.00 0.00 0.00 2.69
757 774 8.536407 CATTTTTACCGTTCAAACTTCGAAAAT 58.464 29.630 0.00 0.00 0.00 1.82
767 784 1.067354 ACTTCGAAAATCCTACGCGGT 60.067 47.619 12.47 0.00 0.00 5.68
772 789 2.414138 CGAAAATCCTACGCGGTTTTCT 59.586 45.455 12.47 0.00 38.82 2.52
774 791 2.754946 AATCCTACGCGGTTTTCTCA 57.245 45.000 12.47 0.00 0.00 3.27
805 822 5.541484 AGAAAGAATTCAATTTCACCAGCCT 59.459 36.000 17.60 0.00 37.78 4.58
806 823 4.796038 AGAATTCAATTTCACCAGCCTG 57.204 40.909 8.44 0.00 0.00 4.85
807 824 4.154942 AGAATTCAATTTCACCAGCCTGT 58.845 39.130 8.44 0.00 0.00 4.00
808 825 4.219288 AGAATTCAATTTCACCAGCCTGTC 59.781 41.667 8.44 0.00 0.00 3.51
809 826 1.909700 TCAATTTCACCAGCCTGTCC 58.090 50.000 0.00 0.00 0.00 4.02
810 827 0.890683 CAATTTCACCAGCCTGTCCC 59.109 55.000 0.00 0.00 0.00 4.46
811 828 0.779997 AATTTCACCAGCCTGTCCCT 59.220 50.000 0.00 0.00 0.00 4.20
812 829 0.329596 ATTTCACCAGCCTGTCCCTC 59.670 55.000 0.00 0.00 0.00 4.30
813 830 0.768221 TTTCACCAGCCTGTCCCTCT 60.768 55.000 0.00 0.00 0.00 3.69
814 831 1.194781 TTCACCAGCCTGTCCCTCTC 61.195 60.000 0.00 0.00 0.00 3.20
815 832 2.284995 ACCAGCCTGTCCCTCTCC 60.285 66.667 0.00 0.00 0.00 3.71
816 833 3.086600 CCAGCCTGTCCCTCTCCC 61.087 72.222 0.00 0.00 0.00 4.30
817 834 2.040278 CAGCCTGTCCCTCTCCCT 59.960 66.667 0.00 0.00 0.00 4.20
818 835 2.063378 CAGCCTGTCCCTCTCCCTC 61.063 68.421 0.00 0.00 0.00 4.30
819 836 2.252898 AGCCTGTCCCTCTCCCTCT 61.253 63.158 0.00 0.00 0.00 3.69
820 837 1.760480 GCCTGTCCCTCTCCCTCTC 60.760 68.421 0.00 0.00 0.00 3.20
821 838 1.075600 CCTGTCCCTCTCCCTCTCC 60.076 68.421 0.00 0.00 0.00 3.71
822 839 1.075600 CTGTCCCTCTCCCTCTCCC 60.076 68.421 0.00 0.00 0.00 4.30
823 840 2.284151 GTCCCTCTCCCTCTCCCC 59.716 72.222 0.00 0.00 0.00 4.81
827 844 4.150454 CTCTCCCTCTCCCCCGCT 62.150 72.222 0.00 0.00 0.00 5.52
866 883 0.829602 TTGGCGCCAAAAGATCCCAA 60.830 50.000 38.61 13.20 32.44 4.12
877 894 3.051392 GATCCCAACTTTGCCGCCG 62.051 63.158 0.00 0.00 0.00 6.46
1185 1211 2.749044 CTCGACGTCTCCCCCGAA 60.749 66.667 14.70 0.00 0.00 4.30
1281 1307 4.856607 CGCGAGAGGAAGCCGGTC 62.857 72.222 0.00 0.00 0.00 4.79
1314 1340 1.571919 CCCGCTAGTTTCTTGATCCG 58.428 55.000 0.00 0.00 0.00 4.18
1315 1341 1.134788 CCCGCTAGTTTCTTGATCCGT 60.135 52.381 0.00 0.00 0.00 4.69
1319 1345 3.109619 GCTAGTTTCTTGATCCGTCTCG 58.890 50.000 0.00 0.00 0.00 4.04
1321 1347 4.201891 GCTAGTTTCTTGATCCGTCTCGTA 60.202 45.833 0.00 0.00 0.00 3.43
1326 1352 2.422479 TCTTGATCCGTCTCGTACCTTG 59.578 50.000 0.00 0.00 0.00 3.61
1330 1356 3.238241 CGTCTCGTACCTTGCGCG 61.238 66.667 0.00 0.00 0.00 6.86
1350 1454 1.029408 TCTCTCGACCTCTCTGCTGC 61.029 60.000 0.00 0.00 0.00 5.25
1362 1466 1.153208 CTGCTGCTCCCCATCTCAC 60.153 63.158 0.00 0.00 0.00 3.51
1390 1494 3.534554 TCGTTGGTGAATGGATCAGATG 58.465 45.455 0.00 0.00 39.19 2.90
1519 1630 2.886134 TTTCCCTCCCCCGTGTTCG 61.886 63.158 0.00 0.00 0.00 3.95
1556 1667 2.435372 TTCATTCCCCATTTCCTCGG 57.565 50.000 0.00 0.00 0.00 4.63
1557 1668 1.590591 TCATTCCCCATTTCCTCGGA 58.409 50.000 0.00 0.00 0.00 4.55
1558 1669 2.135189 TCATTCCCCATTTCCTCGGAT 58.865 47.619 0.00 0.00 0.00 4.18
1587 1698 2.369860 ACAGGTTCAGACATCTCAAGCA 59.630 45.455 0.00 0.00 0.00 3.91
1652 1763 1.067516 GAGCTCAGCAGATCTGACTCC 59.932 57.143 27.04 8.42 46.34 3.85
1681 1792 0.969894 GATGAGATACCTCCCGTGGG 59.030 60.000 0.00 0.00 38.66 4.61
1722 1833 1.144936 CCTCTGGATTCCGTGGAGC 59.855 63.158 12.03 0.00 0.00 4.70
1723 1834 1.144936 CTCTGGATTCCGTGGAGCC 59.855 63.158 0.00 3.63 0.00 4.70
1724 1835 2.202932 CTGGATTCCGTGGAGCCG 60.203 66.667 0.00 0.00 0.00 5.52
1761 1872 1.066303 CTGTAGCAGACACGGAGATCC 59.934 57.143 0.00 0.00 33.31 3.36
1788 1899 5.010282 ACAGTGTCAAAGAAGAAACCAAGT 58.990 37.500 0.00 0.00 0.00 3.16
1789 1900 5.123979 ACAGTGTCAAAGAAGAAACCAAGTC 59.876 40.000 0.00 0.00 0.00 3.01
1791 1902 6.538742 CAGTGTCAAAGAAGAAACCAAGTCTA 59.461 38.462 0.00 0.00 0.00 2.59
1799 1913 2.638363 AGAAACCAAGTCTACCCCTGTC 59.362 50.000 0.00 0.00 0.00 3.51
1827 1941 3.730761 GCAGCAAGCCCGTGAGTG 61.731 66.667 0.00 0.00 37.23 3.51
1855 1969 9.440773 TCTTGATACTACTACGTCTCTTGTTTA 57.559 33.333 0.00 0.00 0.00 2.01
1860 1974 4.818534 ACTACGTCTCTTGTTTACGTCA 57.181 40.909 2.72 0.00 46.04 4.35
1880 1994 5.390567 CGTCAGTAAATTAAGCAGGGTTGAC 60.391 44.000 0.00 0.00 0.00 3.18
1883 1997 7.064728 GTCAGTAAATTAAGCAGGGTTGACTAG 59.935 40.741 0.00 0.00 0.00 2.57
1893 2007 2.093447 AGGGTTGACTAGATTTCCTGCG 60.093 50.000 0.00 0.00 0.00 5.18
1996 2110 4.682859 GCTCATTCAGCTACAAGAGGATGT 60.683 45.833 7.31 0.00 45.83 3.06
2052 2166 0.376152 CGTGCAGCTGATTGTGATCC 59.624 55.000 20.43 0.00 0.00 3.36
2057 2171 3.054875 TGCAGCTGATTGTGATCCTACTT 60.055 43.478 20.43 0.00 0.00 2.24
2058 2172 3.311871 GCAGCTGATTGTGATCCTACTTG 59.688 47.826 20.43 0.00 0.00 3.16
2059 2173 3.311871 CAGCTGATTGTGATCCTACTTGC 59.688 47.826 8.42 0.00 0.00 4.01
2061 2175 2.868583 CTGATTGTGATCCTACTTGCCG 59.131 50.000 0.00 0.00 0.00 5.69
2062 2176 1.599542 GATTGTGATCCTACTTGCCGC 59.400 52.381 0.00 0.00 0.00 6.53
2063 2177 0.323302 TTGTGATCCTACTTGCCGCA 59.677 50.000 0.00 0.00 0.00 5.69
2064 2178 0.108186 TGTGATCCTACTTGCCGCAG 60.108 55.000 0.00 0.00 0.00 5.18
2072 2186 1.996191 CTACTTGCCGCAGTTCTCTTC 59.004 52.381 0.00 0.00 0.00 2.87
2073 2187 0.106708 ACTTGCCGCAGTTCTCTTCA 59.893 50.000 0.00 0.00 0.00 3.02
2085 2199 4.035675 CAGTTCTCTTCAAGTTCGGCTTTT 59.964 41.667 0.00 0.00 34.69 2.27
2093 2207 6.262273 TCTTCAAGTTCGGCTTTTTGATAGTT 59.738 34.615 0.00 0.00 34.69 2.24
2095 2209 6.435428 TCAAGTTCGGCTTTTTGATAGTTTC 58.565 36.000 0.00 0.00 34.69 2.78
2159 2273 5.250774 AGACAGGGCCAAGTTTAGAAGATTA 59.749 40.000 6.18 0.00 0.00 1.75
2191 2305 4.496010 GCAGCAAATGACATCTGATGAGAC 60.496 45.833 23.59 13.91 0.00 3.36
2219 2333 1.067295 AGGCCAGTGGACAGATTCAA 58.933 50.000 19.84 0.00 29.21 2.69
2324 2438 3.971245 GACCCATTGTCTTCAGAGAGT 57.029 47.619 0.00 0.00 41.03 3.24
2341 2455 4.125703 GAGAGTGGTGAATTAGCATCAGG 58.874 47.826 0.00 0.00 39.30 3.86
2354 2468 0.806868 CATCAGGCGTGAATGCTGTT 59.193 50.000 13.87 0.00 35.88 3.16
2358 2472 2.202349 GCGTGAATGCTGTTCCGC 60.202 61.111 15.82 15.82 33.57 5.54
2364 2478 4.778143 ATGCTGTTCCGCCCGGTC 62.778 66.667 6.61 2.64 36.47 4.79
2377 2491 2.651361 CGGTCGACAGAACCAGCT 59.349 61.111 18.91 0.00 0.00 4.24
2398 2512 4.697514 CTTCCTGTTTCAGAAGACACTCA 58.302 43.478 0.00 0.00 32.44 3.41
2401 2515 3.750130 CCTGTTTCAGAAGACACTCATGG 59.250 47.826 0.00 0.00 32.44 3.66
2432 2546 1.336125 GCAGCTGAAGTTGAAAGCACT 59.664 47.619 20.43 0.00 39.47 4.40
2489 2603 5.740513 GCCTGTTCCTATGGATTCTGTAGAC 60.741 48.000 0.00 0.00 0.00 2.59
2491 2605 5.529289 TGTTCCTATGGATTCTGTAGACCT 58.471 41.667 0.00 0.00 0.00 3.85
2500 2614 0.976641 TCTGTAGACCTGCCTGTTGG 59.023 55.000 0.00 0.00 0.00 3.77
2572 2686 3.421844 AGGAAACCAAGATTGTACCTGC 58.578 45.455 0.00 0.00 0.00 4.85
2610 2724 0.390998 GCTGGTGAGCTCTTGAGACC 60.391 60.000 16.19 13.92 42.52 3.85
2668 2782 8.039603 TGTTAACTGCATTTCCTGTATAGTTG 57.960 34.615 7.22 0.00 32.16 3.16
2787 2901 1.340248 GGATGCTGCCATTTCTCATGG 59.660 52.381 0.00 0.00 41.99 3.66
2810 2924 1.293179 TGGTGAGTCCATCGCTGTG 59.707 57.895 0.00 0.00 41.93 3.66
2811 2925 1.184970 TGGTGAGTCCATCGCTGTGA 61.185 55.000 0.00 0.00 41.93 3.58
2821 2935 2.512885 CATCGCTGTGATTTGCTGTTC 58.487 47.619 0.00 0.00 34.13 3.18
2828 2943 4.142447 GCTGTGATTTGCTGTTCATGATCT 60.142 41.667 0.00 0.00 0.00 2.75
2850 2972 7.421530 TCTGTGACACTTATTTTAGAGTTGC 57.578 36.000 7.20 0.00 0.00 4.17
2851 2973 6.426937 TCTGTGACACTTATTTTAGAGTTGCC 59.573 38.462 7.20 0.00 0.00 4.52
2883 3005 3.871594 AGTGTGCTGTTGTCTTTCTGTAC 59.128 43.478 0.00 0.00 0.00 2.90
3210 3335 3.648545 AGACCTATTATCCCCAGACAAGC 59.351 47.826 0.00 0.00 0.00 4.01
3414 3731 3.077359 GACAAGGGTGAGTTTCTGATGG 58.923 50.000 0.00 0.00 0.00 3.51
3471 3788 3.116300 CAATGCAATGCTGATCTTGCTC 58.884 45.455 15.80 3.94 46.16 4.26
3615 3932 3.053842 ACTGCTTGATGTGGGAATGATCT 60.054 43.478 0.00 0.00 0.00 2.75
3696 4013 1.317431 TGCACATGCTGAATCAGGGC 61.317 55.000 12.66 0.00 42.66 5.19
3815 4132 1.466558 GGCGCCTCTTTTCTGAAGAAG 59.533 52.381 22.15 0.00 35.21 2.85
3819 4136 1.466558 CCTCTTTTCTGAAGAAGCGGC 59.533 52.381 0.00 0.00 35.21 6.53
3911 4228 1.521450 GCATGTGCTTGGACTGCAGT 61.521 55.000 21.88 21.88 41.41 4.40
3914 4231 1.096967 TGTGCTTGGACTGCAGTGTG 61.097 55.000 27.27 11.99 41.41 3.82
4020 4337 3.097614 GAGGTGGCAAGTCTTAGGAGTA 58.902 50.000 0.00 0.00 0.00 2.59
4041 4358 0.392998 GGCGGAGAAATCTTCTGGCA 60.393 55.000 9.79 0.00 40.87 4.92
4112 4429 7.141363 GTGATGAAGTTCTACACTTGCATTTT 58.859 34.615 18.53 0.00 46.53 1.82
4114 4431 7.862372 TGATGAAGTTCTACACTTGCATTTTTC 59.138 33.333 4.17 0.00 46.53 2.29
4118 4435 5.049405 AGTTCTACACTTGCATTTTTCTCCG 60.049 40.000 0.00 0.00 27.32 4.63
4139 4456 3.794028 CGAAGGAGAGAAACGCTGAATAG 59.206 47.826 0.00 0.00 0.00 1.73
4140 4457 4.675671 CGAAGGAGAGAAACGCTGAATAGT 60.676 45.833 0.00 0.00 0.00 2.12
4141 4458 5.448768 CGAAGGAGAGAAACGCTGAATAGTA 60.449 44.000 0.00 0.00 0.00 1.82
4192 4509 7.506328 TGAATCATCATCTGCCTAAATGAAG 57.494 36.000 0.00 0.00 35.64 3.02
4224 4541 4.263506 CCAGGACCAAGACTTAATTCAGGT 60.264 45.833 8.93 8.93 0.00 4.00
4378 4710 9.923143 GTAAAACATATTAGGAAACTGGCTTTT 57.077 29.630 0.00 0.00 43.88 2.27
4391 4723 9.406828 GGAAACTGGCTTTTAACACTAAATTAG 57.593 33.333 0.00 0.00 0.00 1.73
4416 4748 0.811281 GGGAGTGCAATGCCTGTAAC 59.189 55.000 18.18 0.00 0.00 2.50
4440 4772 3.006967 TGACCTGTCCTTTCTCAGCTTAC 59.993 47.826 0.00 0.00 0.00 2.34
4452 4784 9.143631 CCTTTCTCAGCTTACAATTTATTTTGG 57.856 33.333 0.00 0.00 0.00 3.28
4458 4790 7.930865 TCAGCTTACAATTTATTTTGGCTGTTT 59.069 29.630 0.00 0.00 38.95 2.83
4473 4805 3.567164 GGCTGTTTACTCATCATGGATGG 59.433 47.826 6.39 0.90 40.15 3.51
4483 4815 3.073503 TCATCATGGATGGGAATCCTGTC 59.926 47.826 0.00 0.00 40.15 3.51
4762 5097 5.850931 CGGAGTCGGTTTAACTAAACAATC 58.149 41.667 12.99 3.99 45.50 2.67
4776 5111 6.668323 ACTAAACAATCGTGTCTTTGAATGG 58.332 36.000 0.00 0.00 36.80 3.16
4910 5262 0.398696 TGCCGGATGTTTGTGGTAGT 59.601 50.000 5.05 0.00 0.00 2.73
4915 5267 1.812571 GGATGTTTGTGGTAGTGCTGG 59.187 52.381 0.00 0.00 0.00 4.85
4942 5303 0.449388 GGGAATTCAGCGCAGTTCAG 59.551 55.000 11.47 0.00 0.00 3.02
4965 5326 6.745907 CAGTGCAATTGTTGTCTCATGATTAG 59.254 38.462 7.40 0.00 0.00 1.73
5108 5472 1.747355 GGAACATGCCAATCTGGTCTG 59.253 52.381 0.00 0.00 40.46 3.51
5109 5473 2.440409 GAACATGCCAATCTGGTCTGT 58.560 47.619 0.00 0.00 40.46 3.41
5110 5474 2.119801 ACATGCCAATCTGGTCTGTC 57.880 50.000 0.00 0.00 40.46 3.51
5111 5475 1.632409 ACATGCCAATCTGGTCTGTCT 59.368 47.619 0.00 0.00 40.46 3.41
5112 5476 2.040813 ACATGCCAATCTGGTCTGTCTT 59.959 45.455 0.00 0.00 40.46 3.01
5113 5477 2.957402 TGCCAATCTGGTCTGTCTTT 57.043 45.000 0.00 0.00 40.46 2.52
5114 5478 2.507484 TGCCAATCTGGTCTGTCTTTG 58.493 47.619 0.00 0.00 40.46 2.77
5115 5479 2.106338 TGCCAATCTGGTCTGTCTTTGA 59.894 45.455 0.00 0.00 40.46 2.69
5116 5480 3.149196 GCCAATCTGGTCTGTCTTTGAA 58.851 45.455 0.00 0.00 40.46 2.69
5117 5481 3.057946 GCCAATCTGGTCTGTCTTTGAAC 60.058 47.826 0.00 0.00 40.46 3.18
5118 5482 4.392940 CCAATCTGGTCTGTCTTTGAACT 58.607 43.478 0.00 0.00 31.35 3.01
5119 5483 4.823989 CCAATCTGGTCTGTCTTTGAACTT 59.176 41.667 0.00 0.00 31.35 2.66
5165 5529 4.220693 TGGGTCGATGAAATTCACTCAT 57.779 40.909 0.00 0.00 36.21 2.90
5191 5555 0.324943 TAGCCCTCTTTGACTGGTGC 59.675 55.000 0.00 0.00 0.00 5.01
5288 5659 6.094193 TGACAGACAATCCTGAGCATATAG 57.906 41.667 0.00 0.00 37.59 1.31
5289 5660 5.835280 TGACAGACAATCCTGAGCATATAGA 59.165 40.000 0.00 0.00 37.59 1.98
5290 5661 6.496218 TGACAGACAATCCTGAGCATATAGAT 59.504 38.462 0.00 0.00 37.59 1.98
5291 5662 7.015974 TGACAGACAATCCTGAGCATATAGATT 59.984 37.037 0.00 0.00 37.59 2.40
5292 5663 8.427902 ACAGACAATCCTGAGCATATAGATTA 57.572 34.615 0.00 0.00 37.59 1.75
5293 5664 9.044646 ACAGACAATCCTGAGCATATAGATTAT 57.955 33.333 0.00 0.00 37.59 1.28
5336 5710 2.093306 TGGAACACACACGATGGATC 57.907 50.000 0.00 0.00 0.00 3.36
5337 5711 1.623311 TGGAACACACACGATGGATCT 59.377 47.619 0.00 0.00 0.00 2.75
5338 5712 2.271800 GGAACACACACGATGGATCTC 58.728 52.381 0.00 0.00 0.00 2.75
5339 5713 2.093973 GGAACACACACGATGGATCTCT 60.094 50.000 0.00 0.00 0.00 3.10
5340 5714 3.589988 GAACACACACGATGGATCTCTT 58.410 45.455 0.00 0.00 0.00 2.85
5341 5715 2.964740 ACACACACGATGGATCTCTTG 58.035 47.619 0.00 0.00 0.00 3.02
5342 5716 1.662629 CACACACGATGGATCTCTTGC 59.337 52.381 0.00 0.00 0.00 4.01
5343 5717 1.552337 ACACACGATGGATCTCTTGCT 59.448 47.619 0.00 0.00 0.00 3.91
5344 5718 2.200067 CACACGATGGATCTCTTGCTC 58.800 52.381 0.00 0.00 0.00 4.26
5345 5719 1.827344 ACACGATGGATCTCTTGCTCA 59.173 47.619 0.00 0.00 0.00 4.26
5346 5720 2.200067 CACGATGGATCTCTTGCTCAC 58.800 52.381 0.00 0.00 0.00 3.51
5347 5721 1.827344 ACGATGGATCTCTTGCTCACA 59.173 47.619 0.00 0.00 0.00 3.58
5348 5722 2.200067 CGATGGATCTCTTGCTCACAC 58.800 52.381 0.00 0.00 0.00 3.82
5349 5723 2.159128 CGATGGATCTCTTGCTCACACT 60.159 50.000 0.00 0.00 0.00 3.55
5350 5724 3.067320 CGATGGATCTCTTGCTCACACTA 59.933 47.826 0.00 0.00 0.00 2.74
5351 5725 4.619973 GATGGATCTCTTGCTCACACTAG 58.380 47.826 0.00 0.00 0.00 2.57
5352 5726 2.167281 TGGATCTCTTGCTCACACTAGC 59.833 50.000 0.00 0.00 43.08 3.42
5373 5747 2.379972 ACTACTAGCTAGCTGGTGGTG 58.620 52.381 37.46 28.27 44.62 4.17
5375 5749 0.898320 ACTAGCTAGCTGGTGGTGTG 59.102 55.000 30.43 10.96 36.52 3.82
5376 5750 0.898320 CTAGCTAGCTGGTGGTGTGT 59.102 55.000 27.68 0.00 0.00 3.72
5377 5751 0.608130 TAGCTAGCTGGTGGTGTGTG 59.392 55.000 27.68 0.00 0.00 3.82
5379 5753 2.057830 CTAGCTGGTGGTGTGTGGA 58.942 57.895 0.00 0.00 0.00 4.02
5380 5754 0.036952 CTAGCTGGTGGTGTGTGGAG 60.037 60.000 0.00 0.00 0.00 3.86
5381 5755 0.762842 TAGCTGGTGGTGTGTGGAGT 60.763 55.000 0.00 0.00 0.00 3.85
5384 5769 2.972505 GGTGGTGTGTGGAGTGCG 60.973 66.667 0.00 0.00 0.00 5.34
5390 5775 3.626924 GTGTGGAGTGCGGGAGGT 61.627 66.667 0.00 0.00 0.00 3.85
5391 5776 2.847234 TGTGGAGTGCGGGAGGTT 60.847 61.111 0.00 0.00 0.00 3.50
5489 5874 3.499737 GGCGATGCCGTTGGTCTG 61.500 66.667 0.00 0.00 39.62 3.51
5611 5996 4.082523 CCCAGTCGCCCGACATGT 62.083 66.667 21.14 0.00 46.76 3.21
5612 5997 2.047274 CCAGTCGCCCGACATGTT 60.047 61.111 21.14 0.00 46.76 2.71
5613 5998 2.100631 CCAGTCGCCCGACATGTTC 61.101 63.158 21.14 0.00 46.76 3.18
5614 5999 2.126071 AGTCGCCCGACATGTTCG 60.126 61.111 21.14 5.25 46.76 3.95
5634 6022 3.680525 CGATCAACGGTGAGCTCG 58.319 61.111 17.74 14.49 38.05 5.03
5635 6023 1.136774 CGATCAACGGTGAGCTCGA 59.863 57.895 19.16 0.00 38.14 4.04
5636 6024 0.863538 CGATCAACGGTGAGCTCGAG 60.864 60.000 19.16 8.45 38.14 4.04
5651 6039 2.586792 GAGCGCCCCTCTGTCAAT 59.413 61.111 2.29 0.00 37.60 2.57
5652 6040 1.522580 GAGCGCCCCTCTGTCAATC 60.523 63.158 2.29 0.00 37.60 2.67
5654 6042 1.377202 GCGCCCCTCTGTCAATCAA 60.377 57.895 0.00 0.00 0.00 2.57
5656 6044 0.321564 CGCCCCTCTGTCAATCAACA 60.322 55.000 0.00 0.00 0.00 3.33
5658 6046 1.457346 CCCCTCTGTCAATCAACAGC 58.543 55.000 0.00 0.00 45.12 4.40
5662 6050 3.001414 CCTCTGTCAATCAACAGCTCTG 58.999 50.000 0.00 0.00 45.12 3.35
5663 6051 3.556633 CCTCTGTCAATCAACAGCTCTGT 60.557 47.826 0.00 0.00 45.12 3.41
5664 6052 3.396560 TCTGTCAATCAACAGCTCTGTG 58.603 45.455 2.97 0.00 45.12 3.66
5665 6053 3.136763 CTGTCAATCAACAGCTCTGTGT 58.863 45.455 2.97 0.00 44.13 3.72
5666 6054 4.039124 TCTGTCAATCAACAGCTCTGTGTA 59.961 41.667 2.97 0.00 45.12 2.90
5670 6058 6.071391 TGTCAATCAACAGCTCTGTGTATCTA 60.071 38.462 2.97 0.00 44.13 1.98
5671 6059 6.983307 GTCAATCAACAGCTCTGTGTATCTAT 59.017 38.462 2.97 0.00 44.13 1.98
5672 6060 6.982724 TCAATCAACAGCTCTGTGTATCTATG 59.017 38.462 2.97 0.00 44.13 2.23
5673 6061 4.686972 TCAACAGCTCTGTGTATCTATGC 58.313 43.478 2.97 0.00 44.13 3.14
5674 6062 3.742433 ACAGCTCTGTGTATCTATGCC 57.258 47.619 1.15 0.00 43.11 4.40
5722 6116 6.721318 TCCATCTATAAATAGGATGTTGGCC 58.279 40.000 0.00 0.00 0.00 5.36
5828 6230 1.134694 GCCGGCGAGAAATTGTCAC 59.865 57.895 12.58 0.00 0.00 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 2.579787 GTCTCATCGTCGTGGCGG 60.580 66.667 0.00 0.00 0.00 6.13
20 21 0.455815 TGGATGTGACGGTCTCATCG 59.544 55.000 31.00 2.43 44.13 3.84
27 28 1.218047 CGGACATGGATGTGACGGT 59.782 57.895 0.00 0.00 41.95 4.83
31 32 1.111277 ATCGTCGGACATGGATGTGA 58.889 50.000 9.10 0.00 41.95 3.58
35 36 1.111277 TGACATCGTCGGACATGGAT 58.889 50.000 18.26 7.89 34.95 3.41
40 41 1.671556 CCATGTTGACATCGTCGGACA 60.672 52.381 9.10 5.86 36.33 4.02
47 48 1.129251 GTGTCTGCCATGTTGACATCG 59.871 52.381 13.25 0.00 41.78 3.84
54 55 1.968017 CGCCAGTGTCTGCCATGTT 60.968 57.895 0.00 0.00 0.00 2.71
58 59 4.007644 CCTCGCCAGTGTCTGCCA 62.008 66.667 0.00 0.00 0.00 4.92
59 60 3.240134 TTCCTCGCCAGTGTCTGCC 62.240 63.158 0.00 0.00 0.00 4.85
62 63 0.540830 ACTCTTCCTCGCCAGTGTCT 60.541 55.000 0.00 0.00 0.00 3.41
63 64 1.133407 CTACTCTTCCTCGCCAGTGTC 59.867 57.143 0.00 0.00 0.00 3.67
67 68 0.179124 GTGCTACTCTTCCTCGCCAG 60.179 60.000 0.00 0.00 0.00 4.85
88 89 2.345244 AGCCACGACAGCTTCCAG 59.655 61.111 0.00 0.00 37.24 3.86
96 97 2.099652 CTCAGACCCAAGCCACGACA 62.100 60.000 0.00 0.00 0.00 4.35
112 113 2.607750 GAGTGGTGGCCCTCCTCA 60.608 66.667 13.97 0.00 32.71 3.86
125 126 2.269241 GGCGGGAAGGGAAGAGTG 59.731 66.667 0.00 0.00 0.00 3.51
140 141 0.440371 CTCGAAAGTGAAGCTTCGGC 59.560 55.000 21.11 15.90 36.17 5.54
169 170 3.047877 GGCAAGTTCACCGGTCGG 61.048 66.667 2.59 7.97 42.03 4.79
170 171 3.411351 CGGCAAGTTCACCGGTCG 61.411 66.667 2.59 0.00 45.74 4.79
180 181 0.609131 CTTCCCCATGTTCGGCAAGT 60.609 55.000 0.00 0.00 0.00 3.16
225 226 1.225376 CTAAATAATCGCCGGCCGCA 61.225 55.000 22.85 5.76 37.30 5.69
284 285 9.696917 AACTAGACCAAATTCATCACATTTTTC 57.303 29.630 0.00 0.00 0.00 2.29
306 317 8.402472 CAACTTGGTTGATGTTCACTTAAACTA 58.598 33.333 4.60 0.00 45.28 2.24
319 330 4.589216 ATTCCACACAACTTGGTTGATG 57.411 40.909 15.89 12.60 45.28 3.07
328 339 1.202604 ACGGACGAATTCCACACAACT 60.203 47.619 0.00 0.00 46.29 3.16
334 345 3.742369 TGAACTAAACGGACGAATTCCAC 59.258 43.478 0.00 0.00 46.29 4.02
343 354 6.474102 TCAAAGCAAAATTGAACTAAACGGAC 59.526 34.615 0.00 0.00 34.04 4.79
346 357 9.146270 CATTTCAAAGCAAAATTGAACTAAACG 57.854 29.630 1.48 0.00 44.14 3.60
347 358 9.986833 ACATTTCAAAGCAAAATTGAACTAAAC 57.013 25.926 1.48 0.00 44.14 2.01
379 390 0.174162 GCTGGGCATTCAACCATGAC 59.826 55.000 0.00 0.00 35.93 3.06
389 400 2.687902 ATGCAGGAGCTGGGCATT 59.312 55.556 9.80 0.00 45.34 3.56
393 404 0.763652 ACATAGATGCAGGAGCTGGG 59.236 55.000 0.00 0.00 42.74 4.45
394 405 1.270732 GGACATAGATGCAGGAGCTGG 60.271 57.143 0.00 0.00 42.74 4.85
413 424 1.066143 ACTATCCAAACCAGTCTGCGG 60.066 52.381 0.00 0.00 0.00 5.69
425 436 2.894765 TGTTCGTCCACAGACTATCCAA 59.105 45.455 0.00 0.00 41.16 3.53
430 442 0.594602 CGGTGTTCGTCCACAGACTA 59.405 55.000 8.92 0.00 41.16 2.59
443 455 2.776913 CCAAAACGGGCACGGTGTT 61.777 57.895 15.46 0.00 40.63 3.32
447 459 3.361977 CCTCCAAAACGGGCACGG 61.362 66.667 15.46 0.00 46.48 4.94
452 464 3.053896 GCCGACCTCCAAAACGGG 61.054 66.667 0.00 0.00 44.61 5.28
455 467 0.243636 CCAATGCCGACCTCCAAAAC 59.756 55.000 0.00 0.00 0.00 2.43
461 473 1.162800 GCATCTCCAATGCCGACCTC 61.163 60.000 0.00 0.00 39.01 3.85
462 474 1.153086 GCATCTCCAATGCCGACCT 60.153 57.895 0.00 0.00 39.01 3.85
482 494 5.944007 ACTAAGGGCATGTTTGGTTACTTAG 59.056 40.000 0.00 0.00 40.96 2.18
491 503 5.006746 GTCGAGATAACTAAGGGCATGTTTG 59.993 44.000 0.00 0.00 0.00 2.93
503 515 5.335127 GCGGTTAAGTTGTCGAGATAACTA 58.665 41.667 14.08 0.00 41.03 2.24
504 516 4.171754 GCGGTTAAGTTGTCGAGATAACT 58.828 43.478 9.03 9.03 43.21 2.24
512 524 0.788391 GTGAGGCGGTTAAGTTGTCG 59.212 55.000 0.00 0.00 0.00 4.35
515 527 2.218603 AGTTGTGAGGCGGTTAAGTTG 58.781 47.619 0.00 0.00 0.00 3.16
521 533 1.006102 CTCGAGTTGTGAGGCGGTT 60.006 57.895 3.62 0.00 0.00 4.44
522 534 2.651361 CTCGAGTTGTGAGGCGGT 59.349 61.111 3.62 0.00 0.00 5.68
527 539 4.377431 GCAAATGTTACCTCGAGTTGTGAG 60.377 45.833 12.31 0.00 0.00 3.51
552 564 6.333416 CGATGATACCCCTATGAGTGTAATG 58.667 44.000 0.00 0.00 0.00 1.90
555 567 3.762288 GCGATGATACCCCTATGAGTGTA 59.238 47.826 0.00 0.00 0.00 2.90
560 572 1.544246 CGTGCGATGATACCCCTATGA 59.456 52.381 0.00 0.00 0.00 2.15
561 573 1.272490 ACGTGCGATGATACCCCTATG 59.728 52.381 0.00 0.00 0.00 2.23
562 574 1.629043 ACGTGCGATGATACCCCTAT 58.371 50.000 0.00 0.00 0.00 2.57
563 575 1.338973 GAACGTGCGATGATACCCCTA 59.661 52.381 0.00 0.00 0.00 3.53
564 576 0.104304 GAACGTGCGATGATACCCCT 59.896 55.000 0.00 0.00 0.00 4.79
565 577 1.213094 CGAACGTGCGATGATACCCC 61.213 60.000 11.51 0.00 0.00 4.95
566 578 1.818221 GCGAACGTGCGATGATACCC 61.818 60.000 22.89 0.00 0.00 3.69
567 579 0.870307 AGCGAACGTGCGATGATACC 60.870 55.000 22.89 0.00 40.67 2.73
668 681 1.654105 CGAGATCGTGTTTCTTTCCGG 59.346 52.381 0.00 0.00 34.11 5.14
747 764 1.067354 ACCGCGTAGGATTTTCGAAGT 60.067 47.619 4.92 0.00 45.00 3.01
757 774 0.963962 ACTGAGAAAACCGCGTAGGA 59.036 50.000 4.92 0.00 45.00 2.94
805 822 2.637640 GGGGAGAGGGAGAGGGACA 61.638 68.421 0.00 0.00 0.00 4.02
806 823 2.284151 GGGGAGAGGGAGAGGGAC 59.716 72.222 0.00 0.00 0.00 4.46
807 824 3.036959 GGGGGAGAGGGAGAGGGA 61.037 72.222 0.00 0.00 0.00 4.20
808 825 4.548513 CGGGGGAGAGGGAGAGGG 62.549 77.778 0.00 0.00 0.00 4.30
810 827 3.687828 AAGCGGGGGAGAGGGAGAG 62.688 68.421 0.00 0.00 0.00 3.20
811 828 3.680920 GAAGCGGGGGAGAGGGAGA 62.681 68.421 0.00 0.00 0.00 3.71
812 829 3.157949 GAAGCGGGGGAGAGGGAG 61.158 72.222 0.00 0.00 0.00 4.30
813 830 4.798682 GGAAGCGGGGGAGAGGGA 62.799 72.222 0.00 0.00 0.00 4.20
838 855 2.907897 TTTGGCGCCAAAACGGGTTG 62.908 55.000 43.97 0.00 42.16 3.77
861 878 3.776347 TTCGGCGGCAAAGTTGGGA 62.776 57.895 10.53 0.00 0.00 4.37
866 883 2.750237 GGGATTCGGCGGCAAAGT 60.750 61.111 10.53 0.00 0.00 2.66
877 894 0.753867 GGGAGAAGAGGACGGGATTC 59.246 60.000 0.00 0.00 0.00 2.52
901 918 2.763902 GAGTGGGGGAGGGTTTGG 59.236 66.667 0.00 0.00 0.00 3.28
902 919 2.763902 GGAGTGGGGGAGGGTTTG 59.236 66.667 0.00 0.00 0.00 2.93
913 930 0.179045 GGATTGGACGATGGGAGTGG 60.179 60.000 0.00 0.00 0.00 4.00
914 931 0.179045 GGGATTGGACGATGGGAGTG 60.179 60.000 0.00 0.00 0.00 3.51
915 932 1.686325 CGGGATTGGACGATGGGAGT 61.686 60.000 0.00 0.00 0.00 3.85
994 1011 4.415150 CTGGCTCGGCATGGTGGT 62.415 66.667 0.00 0.00 0.00 4.16
1167 1193 4.790962 TCGGGGGAGACGTCGAGG 62.791 72.222 10.46 3.03 32.96 4.63
1291 1317 0.902531 TCAAGAAACTAGCGGGGGAG 59.097 55.000 0.00 0.00 0.00 4.30
1292 1318 1.485066 GATCAAGAAACTAGCGGGGGA 59.515 52.381 0.00 0.00 0.00 4.81
1293 1319 1.475213 GGATCAAGAAACTAGCGGGGG 60.475 57.143 0.00 0.00 0.00 5.40
1294 1320 1.806623 CGGATCAAGAAACTAGCGGGG 60.807 57.143 0.00 0.00 0.00 5.73
1295 1321 1.134788 ACGGATCAAGAAACTAGCGGG 60.135 52.381 0.00 0.00 0.00 6.13
1296 1322 2.159226 AGACGGATCAAGAAACTAGCGG 60.159 50.000 0.00 0.00 0.00 5.52
1297 1323 3.109619 GAGACGGATCAAGAAACTAGCG 58.890 50.000 0.00 0.00 0.00 4.26
1298 1324 3.109619 CGAGACGGATCAAGAAACTAGC 58.890 50.000 0.00 0.00 0.00 3.42
1299 1325 4.358494 ACGAGACGGATCAAGAAACTAG 57.642 45.455 0.00 0.00 0.00 2.57
1300 1326 4.095483 GGTACGAGACGGATCAAGAAACTA 59.905 45.833 0.00 0.00 0.00 2.24
1301 1327 3.119566 GGTACGAGACGGATCAAGAAACT 60.120 47.826 0.00 0.00 0.00 2.66
1314 1340 2.126580 ACGCGCAAGGTACGAGAC 60.127 61.111 5.73 0.00 34.29 3.36
1315 1341 2.177531 GACGCGCAAGGTACGAGA 59.822 61.111 5.73 0.00 34.29 4.04
1319 1345 1.868251 CGAGAGACGCGCAAGGTAC 60.868 63.158 5.73 0.00 38.28 3.34
1321 1347 3.362797 TCGAGAGACGCGCAAGGT 61.363 61.111 5.73 0.00 42.26 3.50
1350 1454 3.866582 GCGGGGTGAGATGGGGAG 61.867 72.222 0.00 0.00 0.00 4.30
1362 1466 1.674322 ATTCACCAACGAAGCGGGG 60.674 57.895 0.00 0.00 0.00 5.73
1519 1630 2.146073 AAATGCGAGCCCAAGCACAC 62.146 55.000 0.00 0.00 46.83 3.82
1556 1667 6.428159 AGATGTCTGAACCTGTAAAACACATC 59.572 38.462 0.00 0.00 36.29 3.06
1557 1668 6.299141 AGATGTCTGAACCTGTAAAACACAT 58.701 36.000 0.00 0.00 36.29 3.21
1558 1669 5.680619 AGATGTCTGAACCTGTAAAACACA 58.319 37.500 0.00 0.00 35.30 3.72
1587 1698 2.679716 GGAGGGCATGTCCTTGCT 59.320 61.111 22.38 0.00 42.38 3.91
1652 1763 1.541233 GGTATCTCATCAGCCAACCCG 60.541 57.143 0.00 0.00 0.00 5.28
1681 1792 2.266055 CTCCGCCTTGACTCCCAC 59.734 66.667 0.00 0.00 0.00 4.61
1707 1818 2.202932 CGGCTCCACGGAATCCAG 60.203 66.667 0.00 0.00 0.00 3.86
1722 1833 3.726517 CTTCACAACAGGCGGCGG 61.727 66.667 9.78 7.74 0.00 6.13
1723 1834 3.726517 CCTTCACAACAGGCGGCG 61.727 66.667 0.51 0.51 0.00 6.46
1761 1872 4.494199 GGTTTCTTCTTTGACACTGTCACG 60.494 45.833 11.58 6.37 42.60 4.35
1788 1899 0.818445 GCGAGATCGACAGGGGTAGA 60.818 60.000 6.39 0.00 43.02 2.59
1789 1900 1.101635 TGCGAGATCGACAGGGGTAG 61.102 60.000 6.39 0.00 43.02 3.18
1791 1902 1.949847 CTTGCGAGATCGACAGGGGT 61.950 60.000 6.39 0.00 43.02 4.95
1799 1913 3.478226 TTGCTGCTTGCGAGATCG 58.522 55.556 4.70 0.00 46.63 3.69
1855 1969 4.281898 ACCCTGCTTAATTTACTGACGT 57.718 40.909 0.00 0.00 0.00 4.34
1860 1974 7.253905 TCTAGTCAACCCTGCTTAATTTACT 57.746 36.000 0.00 0.00 0.00 2.24
1893 2007 4.942852 AGCACAGATTATCTCACTGCTAC 58.057 43.478 13.74 0.00 37.22 3.58
2052 2166 1.996191 GAAGAGAACTGCGGCAAGTAG 59.004 52.381 3.44 0.00 38.61 2.57
2057 2171 0.106708 ACTTGAAGAGAACTGCGGCA 59.893 50.000 1.29 1.29 0.00 5.69
2058 2172 1.195674 GAACTTGAAGAGAACTGCGGC 59.804 52.381 0.00 0.00 0.00 6.53
2059 2173 1.457303 CGAACTTGAAGAGAACTGCGG 59.543 52.381 0.00 0.00 0.00 5.69
2061 2175 1.195674 GCCGAACTTGAAGAGAACTGC 59.804 52.381 0.00 0.00 0.00 4.40
2062 2176 2.760374 AGCCGAACTTGAAGAGAACTG 58.240 47.619 0.00 0.00 0.00 3.16
2063 2177 3.477210 AAGCCGAACTTGAAGAGAACT 57.523 42.857 0.00 0.00 37.17 3.01
2064 2178 4.553756 AAAAGCCGAACTTGAAGAGAAC 57.446 40.909 0.00 0.00 39.09 3.01
2072 2186 5.629435 GGAAACTATCAAAAAGCCGAACTTG 59.371 40.000 0.00 0.00 39.09 3.16
2073 2187 5.535030 AGGAAACTATCAAAAAGCCGAACTT 59.465 36.000 0.00 0.00 40.61 2.66
2159 2273 3.682696 TGTCATTTGCTGCTCTTCTGAT 58.317 40.909 0.00 0.00 0.00 2.90
2191 2305 1.077930 CCACTGGCCTGGACATCAG 60.078 63.158 14.82 4.03 43.00 2.90
2239 2353 2.360726 CTGCACTGCCATCCAGCA 60.361 61.111 0.00 0.00 45.78 4.41
2240 2354 3.823330 GCTGCACTGCCATCCAGC 61.823 66.667 0.00 0.00 45.78 4.85
2272 2386 0.250467 TGGCTCTTCTCCTTGTGTGC 60.250 55.000 0.00 0.00 0.00 4.57
2323 2437 1.331756 CGCCTGATGCTAATTCACCAC 59.668 52.381 0.00 0.00 38.05 4.16
2324 2438 1.065491 ACGCCTGATGCTAATTCACCA 60.065 47.619 0.00 0.00 38.05 4.17
2341 2455 2.202349 GCGGAACAGCATTCACGC 60.202 61.111 15.35 15.35 40.19 5.34
2344 2458 2.745884 CGGGCGGAACAGCATTCA 60.746 61.111 3.46 0.00 39.27 2.57
2358 2472 2.261671 CTGGTTCTGTCGACCGGG 59.738 66.667 14.12 3.50 39.42 5.73
2364 2478 0.034059 ACAGGAAGCTGGTTCTGTCG 59.966 55.000 17.95 7.74 35.25 4.35
2370 2484 3.117888 TCTTCTGAAACAGGAAGCTGGTT 60.118 43.478 0.00 0.00 36.90 3.67
2371 2485 2.439507 TCTTCTGAAACAGGAAGCTGGT 59.560 45.455 0.00 0.00 31.51 4.00
2377 2491 4.753516 TGAGTGTCTTCTGAAACAGGAA 57.246 40.909 0.00 0.00 32.91 3.36
2398 2512 1.822990 CAGCTGCATTTCCTTCACCAT 59.177 47.619 0.00 0.00 0.00 3.55
2401 2515 2.555757 ACTTCAGCTGCATTTCCTTCAC 59.444 45.455 9.47 0.00 0.00 3.18
2413 2527 2.357009 ACAGTGCTTTCAACTTCAGCTG 59.643 45.455 7.63 7.63 34.42 4.24
2432 2546 3.507162 TTTGATGCCTTCTCTTCCACA 57.493 42.857 0.00 0.00 0.00 4.17
2500 2614 1.339535 CCTGAGTTCCTTCAGCCTTCC 60.340 57.143 0.00 0.00 42.58 3.46
2593 2707 1.277273 CATGGTCTCAAGAGCTCACCA 59.723 52.381 21.32 21.32 42.60 4.17
2607 2721 3.684788 ACGTGCAAATAAGAGACATGGTC 59.315 43.478 0.00 0.00 0.00 4.02
2610 2724 4.668576 ACACGTGCAAATAAGAGACATG 57.331 40.909 17.22 0.00 0.00 3.21
2668 2782 8.671921 AGAAGAATACATGATGTCAATTGTCAC 58.328 33.333 0.00 0.00 0.00 3.67
2804 2918 2.095617 TCATGAACAGCAAATCACAGCG 60.096 45.455 0.00 0.00 35.48 5.18
2810 2924 5.106436 TGTCACAGATCATGAACAGCAAATC 60.106 40.000 0.00 0.00 0.00 2.17
2811 2925 4.763279 TGTCACAGATCATGAACAGCAAAT 59.237 37.500 0.00 0.00 0.00 2.32
2821 2935 9.376075 ACTCTAAAATAAGTGTCACAGATCATG 57.624 33.333 5.62 0.00 0.00 3.07
2828 2943 6.554334 GGCAACTCTAAAATAAGTGTCACA 57.446 37.500 5.62 0.00 0.00 3.58
2850 2972 4.997395 ACAACAGCACACTATAAGAACAGG 59.003 41.667 0.00 0.00 0.00 4.00
2851 2973 5.928839 AGACAACAGCACACTATAAGAACAG 59.071 40.000 0.00 0.00 0.00 3.16
2883 3005 5.220710 TCTTTCTGAGAAGAGGTTTCTGG 57.779 43.478 0.00 0.00 32.79 3.86
3008 3130 1.386533 CTTGGTAGCATGCTTCAGGG 58.613 55.000 28.02 15.77 0.00 4.45
3210 3335 2.685388 TCCTCTCTGATGTTAGCTCACG 59.315 50.000 0.00 0.00 0.00 4.35
3364 3489 5.395103 GCTAATCCACTTGACTCATCTCTGT 60.395 44.000 0.00 0.00 0.00 3.41
3548 3865 1.546029 TCATGTCTCTCTGGTGAACCG 59.454 52.381 0.00 0.00 39.43 4.44
3552 3869 4.081807 CACAGAATCATGTCTCTCTGGTGA 60.082 45.833 15.44 0.00 39.71 4.02
3615 3932 1.143684 AGAAGGTTCAGAAGGCTTGCA 59.856 47.619 3.46 0.00 0.00 4.08
3696 4013 1.523758 GGTGTGCCCACTTTACTCAG 58.476 55.000 0.00 0.00 41.53 3.35
3911 4228 1.065851 TCAGCACGTAGACGAAACACA 59.934 47.619 9.41 0.00 43.02 3.72
3914 4231 4.012319 TCTATCAGCACGTAGACGAAAC 57.988 45.455 9.41 0.00 43.02 2.78
4020 4337 1.748591 GCCAGAAGATTTCTCCGCCAT 60.749 52.381 0.00 0.00 38.11 4.40
4041 4358 3.749609 GTGCCGGTGAATACACTTACTTT 59.250 43.478 1.90 0.00 45.32 2.66
4118 4435 4.749976 ACTATTCAGCGTTTCTCTCCTTC 58.250 43.478 0.00 0.00 0.00 3.46
4192 4509 2.424956 GTCTTGGTCCTGGCAATGAATC 59.575 50.000 0.00 0.00 0.00 2.52
4201 4518 4.263506 ACCTGAATTAAGTCTTGGTCCTGG 60.264 45.833 12.85 0.00 0.00 4.45
4224 4541 3.834489 AAAAATGCATGTGGGTGACAA 57.166 38.095 0.00 0.00 38.36 3.18
4283 4602 1.530283 CCATGCAGAGGGCTCATGA 59.470 57.895 0.00 0.00 45.15 3.07
4306 4625 7.984391 TGCACACATAAATAGAATACACAAGG 58.016 34.615 0.00 0.00 0.00 3.61
4378 4710 7.391620 CACTCCCAGGTTCTAATTTAGTGTTA 58.608 38.462 3.45 0.00 0.00 2.41
4391 4723 1.598701 GGCATTGCACTCCCAGGTTC 61.599 60.000 11.39 0.00 0.00 3.62
4416 4748 1.338579 GCTGAGAAAGGACAGGTCAGG 60.339 57.143 1.41 0.00 36.05 3.86
4440 4772 9.421806 TGATGAGTAAACAGCCAAAATAAATTG 57.578 29.630 0.00 0.00 0.00 2.32
4452 4784 3.567164 CCCATCCATGATGAGTAAACAGC 59.433 47.826 5.67 0.00 42.09 4.40
4473 4805 5.526846 CAGCTAAATCTTCAGACAGGATTCC 59.473 44.000 0.00 0.00 0.00 3.01
4483 4815 3.559242 GCTACAGGCAGCTAAATCTTCAG 59.441 47.826 0.00 0.00 41.35 3.02
4569 4902 4.005650 TCCTGCTGCAGATTTAACAGAAG 58.994 43.478 30.10 9.27 36.91 2.85
4762 5097 3.127548 CCCTGAATCCATTCAAAGACACG 59.872 47.826 3.64 0.00 45.26 4.49
4776 5111 1.380380 CACCCTTGGGCCCTGAATC 60.380 63.158 25.70 0.00 0.00 2.52
4910 5262 3.237746 TGAATTCCCACAAAATCCAGCA 58.762 40.909 2.27 0.00 0.00 4.41
4915 5267 2.262211 GCGCTGAATTCCCACAAAATC 58.738 47.619 0.00 0.00 0.00 2.17
4942 5303 6.845302 TCTAATCATGAGACAACAATTGCAC 58.155 36.000 5.05 0.00 0.00 4.57
4965 5326 5.538433 AGCTTCCACCTCTCTCTACATAATC 59.462 44.000 0.00 0.00 0.00 1.75
4973 5334 1.077005 ACAGAGCTTCCACCTCTCTCT 59.923 52.381 0.00 0.00 37.57 3.10
4974 5335 1.555967 ACAGAGCTTCCACCTCTCTC 58.444 55.000 0.00 0.00 37.57 3.20
5068 5432 5.596836 TCCAGTTTCACAGCTTTGATTTT 57.403 34.783 2.84 0.00 0.00 1.82
5158 5522 5.441718 AGAGGGCTAAAATTGATGAGTGA 57.558 39.130 0.00 0.00 0.00 3.41
5165 5529 4.766891 CCAGTCAAAGAGGGCTAAAATTGA 59.233 41.667 0.00 0.00 0.00 2.57
5309 5683 3.532542 TCGTGTGTGTTCCATGTTTGTA 58.467 40.909 0.00 0.00 0.00 2.41
5310 5684 2.360844 TCGTGTGTGTTCCATGTTTGT 58.639 42.857 0.00 0.00 0.00 2.83
5332 5706 2.820330 GCTAGTGTGAGCAAGAGATCC 58.180 52.381 0.00 0.00 42.36 3.36
5341 5715 2.685897 AGCTAGTAGTGCTAGTGTGAGC 59.314 50.000 15.62 3.99 46.81 4.26
5349 5723 3.215151 CACCAGCTAGCTAGTAGTGCTA 58.785 50.000 18.86 3.39 41.46 3.49
5350 5724 2.028130 CACCAGCTAGCTAGTAGTGCT 58.972 52.381 18.86 10.43 43.79 4.40
5351 5725 1.067821 CCACCAGCTAGCTAGTAGTGC 59.932 57.143 18.86 8.17 0.00 4.40
5352 5726 2.099921 CACCACCAGCTAGCTAGTAGTG 59.900 54.545 22.36 22.36 0.00 2.74
5353 5727 2.291670 ACACCACCAGCTAGCTAGTAGT 60.292 50.000 18.86 13.03 0.00 2.73
5354 5728 2.099921 CACACCACCAGCTAGCTAGTAG 59.900 54.545 18.86 12.29 0.00 2.57
5355 5729 2.100197 CACACCACCAGCTAGCTAGTA 58.900 52.381 18.86 0.00 0.00 1.82
5356 5730 0.898320 CACACCACCAGCTAGCTAGT 59.102 55.000 18.86 14.34 0.00 2.57
5357 5731 0.898320 ACACACCACCAGCTAGCTAG 59.102 55.000 18.86 16.84 0.00 3.42
5358 5732 0.608130 CACACACCACCAGCTAGCTA 59.392 55.000 18.86 0.00 0.00 3.32
5373 5747 2.676163 AAACCTCCCGCACTCCACAC 62.676 60.000 0.00 0.00 0.00 3.82
5375 5749 0.391263 CTAAACCTCCCGCACTCCAC 60.391 60.000 0.00 0.00 0.00 4.02
5376 5750 1.980052 CTAAACCTCCCGCACTCCA 59.020 57.895 0.00 0.00 0.00 3.86
5377 5751 1.449778 GCTAAACCTCCCGCACTCC 60.450 63.158 0.00 0.00 0.00 3.85
5379 5753 2.669240 GGCTAAACCTCCCGCACT 59.331 61.111 0.00 0.00 34.51 4.40
5380 5754 2.818274 CGGCTAAACCTCCCGCAC 60.818 66.667 0.00 0.00 35.14 5.34
5381 5755 4.090588 CCGGCTAAACCTCCCGCA 62.091 66.667 0.00 0.00 40.65 5.69
5384 5769 2.639883 CTACGCCGGCTAAACCTCCC 62.640 65.000 26.68 0.00 35.61 4.30
5390 5775 1.153978 CACGTCTACGCCGGCTAAA 60.154 57.895 26.68 8.55 44.43 1.85
5391 5776 2.486504 CACGTCTACGCCGGCTAA 59.513 61.111 26.68 11.40 44.43 3.09
5489 5874 2.401766 CCCGAGTTCCACAGCATGC 61.402 63.158 10.51 10.51 42.53 4.06
5634 6022 1.522580 GATTGACAGAGGGGCGCTC 60.523 63.158 22.73 22.73 0.00 5.03
5635 6023 1.841302 TTGATTGACAGAGGGGCGCT 61.841 55.000 7.64 2.69 0.00 5.92
5636 6024 1.377202 TTGATTGACAGAGGGGCGC 60.377 57.895 0.00 0.00 0.00 6.53
5638 6026 3.650647 TGTTGATTGACAGAGGGGC 57.349 52.632 0.00 0.00 0.00 5.80
5645 6033 3.198409 ACACAGAGCTGTTGATTGACA 57.802 42.857 0.00 0.00 42.83 3.58
5646 6034 5.174395 AGATACACAGAGCTGTTGATTGAC 58.826 41.667 0.00 0.00 42.83 3.18
5651 6039 4.442052 GGCATAGATACACAGAGCTGTTGA 60.442 45.833 0.00 0.00 42.83 3.18
5652 6040 3.806521 GGCATAGATACACAGAGCTGTTG 59.193 47.826 0.00 0.00 42.83 3.33
5654 6042 3.033909 TGGCATAGATACACAGAGCTGT 58.966 45.455 0.00 0.00 46.17 4.40
5656 6044 3.069300 CACTGGCATAGATACACAGAGCT 59.931 47.826 0.00 0.00 33.57 4.09
5658 6046 3.069300 AGCACTGGCATAGATACACAGAG 59.931 47.826 0.00 0.00 44.61 3.35
5662 6050 1.869767 GCAGCACTGGCATAGATACAC 59.130 52.381 0.00 0.00 44.61 2.90
5663 6051 1.764723 AGCAGCACTGGCATAGATACA 59.235 47.619 0.00 0.00 44.61 2.29
5664 6052 2.036992 AGAGCAGCACTGGCATAGATAC 59.963 50.000 0.00 0.00 44.61 2.24
5665 6053 2.298446 GAGAGCAGCACTGGCATAGATA 59.702 50.000 0.00 0.00 44.61 1.98
5666 6054 1.070445 GAGAGCAGCACTGGCATAGAT 59.930 52.381 0.00 0.00 44.61 1.98
5670 6058 0.979709 TAGGAGAGCAGCACTGGCAT 60.980 55.000 0.00 0.00 44.61 4.40
5671 6059 1.610379 TAGGAGAGCAGCACTGGCA 60.610 57.895 0.00 0.00 44.61 4.92
5672 6060 1.143620 CTAGGAGAGCAGCACTGGC 59.856 63.158 0.00 0.00 41.61 4.85
5694 6087 9.799106 CCAACATCCTATTTATAGATGGAAACT 57.201 33.333 4.44 0.00 32.05 2.66
5713 6106 1.153449 TCATCGTCCGGCCAACATC 60.153 57.895 2.24 0.00 0.00 3.06
5722 6116 2.643790 CGTCGTCGTCATCGTCCG 60.644 66.667 0.00 0.00 38.33 4.79
5828 6230 1.337260 ACACTTGAACTCGCCTGCTAG 60.337 52.381 0.00 0.00 0.00 3.42


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.