Multiple sequence alignment - TraesCS3A01G083200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G083200 chr3A 100.000 3992 0 0 1 3992 53558414 53562405 0.000000e+00 7372.0
1 TraesCS3A01G083200 chr3A 90.164 183 18 0 602 784 196200253 196200435 5.160000e-59 239.0
2 TraesCS3A01G083200 chr3B 95.102 3185 105 24 835 3992 65552210 65555370 0.000000e+00 4970.0
3 TraesCS3A01G083200 chr3B 100.000 46 0 0 792 837 65552147 65552192 7.110000e-13 86.1
4 TraesCS3A01G083200 chr3B 95.238 42 2 0 2452 2493 65553690 65553731 2.570000e-07 67.6
5 TraesCS3A01G083200 chr3D 95.825 1581 50 7 835 2402 42095958 42094381 0.000000e+00 2540.0
6 TraesCS3A01G083200 chr3D 89.406 859 51 15 2367 3219 42094447 42093623 0.000000e+00 1046.0
7 TraesCS3A01G083200 chr3D 88.874 755 59 11 3248 3992 42093630 42092891 0.000000e+00 905.0
8 TraesCS3A01G083200 chr3D 91.312 564 39 8 1 558 42096579 42096020 0.000000e+00 761.0
9 TraesCS3A01G083200 chr3D 87.925 265 27 4 188 450 586579196 586578935 1.390000e-79 307.0
10 TraesCS3A01G083200 chr3D 96.429 56 1 1 782 837 42096031 42095977 1.530000e-14 91.6
11 TraesCS3A01G083200 chr6D 88.973 263 24 4 188 450 14982624 14982367 1.790000e-83 320.0
12 TraesCS3A01G083200 chr6D 94.964 139 7 0 602 740 157450422 157450560 6.720000e-53 219.0
13 TraesCS3A01G083200 chr1D 88.636 264 25 4 189 450 473119303 473119043 2.320000e-82 316.0
14 TraesCS3A01G083200 chr5D 88.213 263 29 2 188 450 126262950 126262690 3.000000e-81 313.0
15 TraesCS3A01G083200 chr7B 87.879 264 29 2 187 450 615378207 615377947 1.390000e-79 307.0
16 TraesCS3A01G083200 chr2A 87.407 270 26 7 187 454 8681168 8680905 1.800000e-78 303.0
17 TraesCS3A01G083200 chr2A 87.085 271 29 5 183 450 339090559 339090826 6.480000e-78 302.0
18 TraesCS3A01G083200 chr4B 86.861 274 29 6 183 454 489932396 489932128 2.330000e-77 300.0
19 TraesCS3A01G083200 chr4B 77.354 393 75 10 1814 2202 11568053 11568435 1.870000e-53 220.0
20 TraesCS3A01G083200 chr4D 92.350 183 14 0 602 784 509265796 509265614 1.100000e-65 261.0
21 TraesCS3A01G083200 chr4D 85.714 63 9 0 1097 1159 6379660 6379598 2.570000e-07 67.6
22 TraesCS3A01G083200 chr1B 91.257 183 16 0 602 784 242749583 242749401 2.380000e-62 250.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G083200 chr3A 53558414 53562405 3991 False 7372.00 7372 100.0000 1 3992 1 chr3A.!!$F1 3991
1 TraesCS3A01G083200 chr3B 65552147 65555370 3223 False 1707.90 4970 96.7800 792 3992 3 chr3B.!!$F1 3200
2 TraesCS3A01G083200 chr3D 42092891 42096579 3688 True 1068.72 2540 92.3692 1 3992 5 chr3D.!!$R2 3991

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
651 658 0.034863 GGGTCTCGGCCAAACCATAA 60.035 55.0 17.37 0.0 39.03 1.90 F
751 758 0.037790 ACAGCGACTCCTTGCTTCTC 60.038 55.0 0.00 0.0 40.03 2.87 F
752 759 0.246086 CAGCGACTCCTTGCTTCTCT 59.754 55.0 0.00 0.0 40.03 3.10 F
2268 2320 0.403271 AGCACATCTTCACCCAGCTT 59.597 50.0 0.00 0.0 0.00 3.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2229 2281 0.609151 CAAATGTGCCTGCCCATTCA 59.391 50.000 0.36 0.0 31.15 2.57 R
2265 2317 0.954452 CTGTCCTTGGTTGGTCAAGC 59.046 55.000 6.00 6.0 41.89 4.01 R
2299 2351 1.681538 TGTGAGAGATCCTCCGTAGC 58.318 55.000 8.25 0.0 41.25 3.58 R
3941 4043 1.963515 GCCCAATGGGTTATGATCCAC 59.036 52.381 21.02 0.0 46.51 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.185350 CTCGCTTGACGGGCTCAT 59.815 61.111 0.00 0.00 43.89 2.90
33 34 1.967066 ACGGGCTCATTGAGAGGATAG 59.033 52.381 17.87 4.55 44.86 2.08
47 48 1.209747 AGGATAGTGGCGGAAAGGAAC 59.790 52.381 0.00 0.00 0.00 3.62
83 84 2.239654 TGGATTGCTTAAGGGAGACTGG 59.760 50.000 4.29 0.00 0.00 4.00
121 122 0.600255 CTATTAAGGTGGGCGAGCGG 60.600 60.000 0.00 0.00 0.00 5.52
144 145 5.474189 GGCGAGTAGTCCTAGATTATGTTCT 59.526 44.000 0.00 0.00 0.00 3.01
160 161 4.703645 TGTTCTTCTCCGAGTAGACATG 57.296 45.455 4.33 0.00 0.00 3.21
162 163 3.646736 TCTTCTCCGAGTAGACATGGA 57.353 47.619 0.80 0.00 0.00 3.41
202 203 7.191593 AGTTTATATGTACTCCCTCCGTTTT 57.808 36.000 0.00 0.00 0.00 2.43
203 204 7.270779 AGTTTATATGTACTCCCTCCGTTTTC 58.729 38.462 0.00 0.00 0.00 2.29
204 205 4.684484 ATATGTACTCCCTCCGTTTTCC 57.316 45.455 0.00 0.00 0.00 3.13
215 216 0.441145 CCGTTTTCCTTTACTCCGCG 59.559 55.000 0.00 0.00 0.00 6.46
340 344 8.537016 CATTCAATGGGGCATCTGATAATATTT 58.463 33.333 0.00 0.00 0.00 1.40
464 470 4.832492 AGGGAGTAACATCTATGGTGGAT 58.168 43.478 0.00 0.00 0.00 3.41
477 483 3.713826 TGGTGGATTTGGGTTCTCTAC 57.286 47.619 0.00 0.00 0.00 2.59
517 524 1.355210 GACACCCAAGTTGTGCGTG 59.645 57.895 1.45 7.63 41.11 5.34
521 528 0.678366 ACCCAAGTTGTGCGTGTTCA 60.678 50.000 1.45 0.00 0.00 3.18
556 563 9.850198 TTTGGATGATTTTTGGAAAGATTTCTT 57.150 25.926 5.37 0.00 37.35 2.52
558 565 9.850198 TGGATGATTTTTGGAAAGATTTCTTTT 57.150 25.926 6.98 0.00 45.37 2.27
592 599 9.797556 GAATGTTTTTATTTATACACTGGACCC 57.202 33.333 0.00 0.00 0.00 4.46
593 600 8.887264 ATGTTTTTATTTATACACTGGACCCA 57.113 30.769 0.00 0.00 0.00 4.51
606 613 3.744660 CTGGACCCAGCAATATAACTCC 58.255 50.000 2.75 0.00 37.24 3.85
607 614 2.104111 TGGACCCAGCAATATAACTCCG 59.896 50.000 0.00 0.00 0.00 4.63
608 615 2.550208 GGACCCAGCAATATAACTCCGG 60.550 54.545 0.00 0.00 0.00 5.14
609 616 1.202770 ACCCAGCAATATAACTCCGGC 60.203 52.381 0.00 0.00 0.00 6.13
610 617 1.202758 CCCAGCAATATAACTCCGGCA 60.203 52.381 0.00 0.00 0.00 5.69
611 618 2.553028 CCCAGCAATATAACTCCGGCAT 60.553 50.000 0.00 0.00 0.00 4.40
612 619 3.307410 CCCAGCAATATAACTCCGGCATA 60.307 47.826 0.00 0.00 0.00 3.14
613 620 4.323417 CCAGCAATATAACTCCGGCATAA 58.677 43.478 0.00 0.00 0.00 1.90
614 621 4.759693 CCAGCAATATAACTCCGGCATAAA 59.240 41.667 0.00 0.00 0.00 1.40
615 622 5.415701 CCAGCAATATAACTCCGGCATAAAT 59.584 40.000 0.00 0.00 0.00 1.40
616 623 6.071952 CCAGCAATATAACTCCGGCATAAATT 60.072 38.462 0.00 0.00 0.00 1.82
617 624 7.023575 CAGCAATATAACTCCGGCATAAATTC 58.976 38.462 0.00 0.00 0.00 2.17
618 625 6.714810 AGCAATATAACTCCGGCATAAATTCA 59.285 34.615 0.00 0.00 0.00 2.57
619 626 6.801862 GCAATATAACTCCGGCATAAATTCAC 59.198 38.462 0.00 0.00 0.00 3.18
620 627 7.305474 CAATATAACTCCGGCATAAATTCACC 58.695 38.462 0.00 0.00 0.00 4.02
621 628 2.052782 ACTCCGGCATAAATTCACCC 57.947 50.000 0.00 0.00 0.00 4.61
622 629 1.318576 CTCCGGCATAAATTCACCCC 58.681 55.000 0.00 0.00 0.00 4.95
623 630 0.626382 TCCGGCATAAATTCACCCCA 59.374 50.000 0.00 0.00 0.00 4.96
624 631 1.006043 TCCGGCATAAATTCACCCCAA 59.994 47.619 0.00 0.00 0.00 4.12
625 632 1.827969 CCGGCATAAATTCACCCCAAA 59.172 47.619 0.00 0.00 0.00 3.28
626 633 2.418060 CCGGCATAAATTCACCCCAAAC 60.418 50.000 0.00 0.00 0.00 2.93
627 634 2.232452 CGGCATAAATTCACCCCAAACA 59.768 45.455 0.00 0.00 0.00 2.83
628 635 3.306364 CGGCATAAATTCACCCCAAACAA 60.306 43.478 0.00 0.00 0.00 2.83
629 636 4.000325 GGCATAAATTCACCCCAAACAAC 59.000 43.478 0.00 0.00 0.00 3.32
630 637 4.503991 GGCATAAATTCACCCCAAACAACA 60.504 41.667 0.00 0.00 0.00 3.33
631 638 4.690280 GCATAAATTCACCCCAAACAACAG 59.310 41.667 0.00 0.00 0.00 3.16
632 639 3.836365 AAATTCACCCCAAACAACAGG 57.164 42.857 0.00 0.00 0.00 4.00
638 645 3.036431 CCCAAACAACAGGGGTCTC 57.964 57.895 0.00 0.00 41.58 3.36
639 646 0.889186 CCCAAACAACAGGGGTCTCG 60.889 60.000 0.00 0.00 41.58 4.04
640 647 0.889186 CCAAACAACAGGGGTCTCGG 60.889 60.000 0.00 0.00 0.00 4.63
641 648 1.228154 AAACAACAGGGGTCTCGGC 60.228 57.895 0.00 0.00 0.00 5.54
642 649 2.692273 AAACAACAGGGGTCTCGGCC 62.692 60.000 0.00 0.00 0.00 6.13
643 650 3.636231 CAACAGGGGTCTCGGCCA 61.636 66.667 2.24 0.00 0.00 5.36
644 651 2.852075 AACAGGGGTCTCGGCCAA 60.852 61.111 2.24 0.00 0.00 4.52
645 652 2.457323 AACAGGGGTCTCGGCCAAA 61.457 57.895 2.24 0.00 0.00 3.28
646 653 2.359975 CAGGGGTCTCGGCCAAAC 60.360 66.667 2.24 0.00 0.00 2.93
647 654 3.647771 AGGGGTCTCGGCCAAACC 61.648 66.667 2.24 6.59 0.00 3.27
648 655 3.961414 GGGGTCTCGGCCAAACCA 61.961 66.667 17.37 0.00 39.03 3.67
649 656 2.355115 GGGTCTCGGCCAAACCAT 59.645 61.111 17.37 0.00 39.03 3.55
650 657 1.605453 GGGTCTCGGCCAAACCATA 59.395 57.895 17.37 0.00 39.03 2.74
651 658 0.034863 GGGTCTCGGCCAAACCATAA 60.035 55.000 17.37 0.00 39.03 1.90
652 659 1.092348 GGTCTCGGCCAAACCATAAC 58.908 55.000 2.24 0.00 39.03 1.89
653 660 1.092348 GTCTCGGCCAAACCATAACC 58.908 55.000 2.24 0.00 39.03 2.85
654 661 0.693622 TCTCGGCCAAACCATAACCA 59.306 50.000 2.24 0.00 39.03 3.67
655 662 1.283613 TCTCGGCCAAACCATAACCAT 59.716 47.619 2.24 0.00 39.03 3.55
656 663 2.506231 TCTCGGCCAAACCATAACCATA 59.494 45.455 2.24 0.00 39.03 2.74
657 664 2.616842 CTCGGCCAAACCATAACCATAC 59.383 50.000 2.24 0.00 39.03 2.39
658 665 1.679153 CGGCCAAACCATAACCATACC 59.321 52.381 2.24 0.00 39.03 2.73
659 666 2.685522 CGGCCAAACCATAACCATACCT 60.686 50.000 2.24 0.00 39.03 3.08
660 667 2.956333 GGCCAAACCATAACCATACCTC 59.044 50.000 0.00 0.00 38.86 3.85
661 668 2.616842 GCCAAACCATAACCATACCTCG 59.383 50.000 0.00 0.00 0.00 4.63
662 669 2.616842 CCAAACCATAACCATACCTCGC 59.383 50.000 0.00 0.00 0.00 5.03
663 670 3.275143 CAAACCATAACCATACCTCGCA 58.725 45.455 0.00 0.00 0.00 5.10
664 671 3.637911 AACCATAACCATACCTCGCAA 57.362 42.857 0.00 0.00 0.00 4.85
665 672 3.194005 ACCATAACCATACCTCGCAAG 57.806 47.619 0.00 0.00 0.00 4.01
679 686 3.296516 GCAAGAACATGCGCTACAC 57.703 52.632 9.73 0.00 36.45 2.90
680 687 0.798776 GCAAGAACATGCGCTACACT 59.201 50.000 9.73 0.00 36.45 3.55
681 688 1.999735 GCAAGAACATGCGCTACACTA 59.000 47.619 9.73 0.00 36.45 2.74
682 689 2.609459 GCAAGAACATGCGCTACACTAT 59.391 45.455 9.73 0.00 36.45 2.12
683 690 3.063997 GCAAGAACATGCGCTACACTATT 59.936 43.478 9.73 0.00 36.45 1.73
684 691 4.581493 CAAGAACATGCGCTACACTATTG 58.419 43.478 9.73 2.15 0.00 1.90
685 692 2.609459 AGAACATGCGCTACACTATTGC 59.391 45.455 9.73 0.00 0.00 3.56
686 693 2.022764 ACATGCGCTACACTATTGCA 57.977 45.000 9.73 0.00 40.23 4.08
687 694 1.665679 ACATGCGCTACACTATTGCAC 59.334 47.619 9.73 0.00 38.54 4.57
688 695 1.665169 CATGCGCTACACTATTGCACA 59.335 47.619 9.73 0.00 38.54 4.57
689 696 2.022764 TGCGCTACACTATTGCACAT 57.977 45.000 9.73 0.00 0.00 3.21
690 697 3.172229 TGCGCTACACTATTGCACATA 57.828 42.857 9.73 0.00 0.00 2.29
691 698 3.727726 TGCGCTACACTATTGCACATAT 58.272 40.909 9.73 0.00 0.00 1.78
692 699 3.494251 TGCGCTACACTATTGCACATATG 59.506 43.478 9.73 0.00 0.00 1.78
693 700 3.740832 GCGCTACACTATTGCACATATGA 59.259 43.478 10.38 0.00 0.00 2.15
694 701 4.376413 GCGCTACACTATTGCACATATGAC 60.376 45.833 10.38 1.48 0.00 3.06
695 702 4.143535 CGCTACACTATTGCACATATGACG 60.144 45.833 10.38 0.93 0.00 4.35
696 703 4.982295 GCTACACTATTGCACATATGACGA 59.018 41.667 10.38 1.25 0.00 4.20
697 704 5.107837 GCTACACTATTGCACATATGACGAC 60.108 44.000 10.38 0.00 0.00 4.34
698 705 4.754322 ACACTATTGCACATATGACGACA 58.246 39.130 10.38 0.00 0.00 4.35
699 706 5.175127 ACACTATTGCACATATGACGACAA 58.825 37.500 10.38 8.12 0.00 3.18
700 707 5.817296 ACACTATTGCACATATGACGACAAT 59.183 36.000 10.38 14.07 0.00 2.71
701 708 6.131389 CACTATTGCACATATGACGACAATG 58.869 40.000 10.38 9.78 0.00 2.82
702 709 3.403613 TTGCACATATGACGACAATGC 57.596 42.857 10.38 7.47 0.00 3.56
703 710 2.631267 TGCACATATGACGACAATGCT 58.369 42.857 10.38 0.00 32.81 3.79
704 711 2.352342 TGCACATATGACGACAATGCTG 59.648 45.455 10.38 0.00 32.81 4.41
705 712 2.609002 GCACATATGACGACAATGCTGA 59.391 45.455 10.38 0.00 0.00 4.26
706 713 3.063861 GCACATATGACGACAATGCTGAA 59.936 43.478 10.38 0.00 0.00 3.02
707 714 4.437255 GCACATATGACGACAATGCTGAAA 60.437 41.667 10.38 0.00 0.00 2.69
708 715 5.630061 CACATATGACGACAATGCTGAAAA 58.370 37.500 10.38 0.00 0.00 2.29
709 716 6.260377 CACATATGACGACAATGCTGAAAAT 58.740 36.000 10.38 0.00 0.00 1.82
710 717 6.195798 CACATATGACGACAATGCTGAAAATG 59.804 38.462 10.38 0.00 0.00 2.32
711 718 6.093909 ACATATGACGACAATGCTGAAAATGA 59.906 34.615 10.38 0.00 0.00 2.57
712 719 4.827304 TGACGACAATGCTGAAAATGAA 57.173 36.364 0.00 0.00 0.00 2.57
713 720 5.180367 TGACGACAATGCTGAAAATGAAA 57.820 34.783 0.00 0.00 0.00 2.69
714 721 5.214417 TGACGACAATGCTGAAAATGAAAG 58.786 37.500 0.00 0.00 0.00 2.62
715 722 3.983344 ACGACAATGCTGAAAATGAAAGC 59.017 39.130 0.00 0.00 37.46 3.51
720 727 3.272439 TGCTGAAAATGAAAGCACTCG 57.728 42.857 0.00 0.00 41.83 4.18
721 728 2.877786 TGCTGAAAATGAAAGCACTCGA 59.122 40.909 0.00 0.00 41.83 4.04
722 729 3.314913 TGCTGAAAATGAAAGCACTCGAA 59.685 39.130 0.00 0.00 41.83 3.71
723 730 4.202000 TGCTGAAAATGAAAGCACTCGAAA 60.202 37.500 0.00 0.00 41.83 3.46
724 731 4.380974 GCTGAAAATGAAAGCACTCGAAAG 59.619 41.667 0.00 0.00 36.91 2.62
725 732 5.749596 TGAAAATGAAAGCACTCGAAAGA 57.250 34.783 0.00 0.00 39.12 2.52
726 733 6.317789 TGAAAATGAAAGCACTCGAAAGAT 57.682 33.333 0.00 0.00 40.84 2.40
727 734 7.433708 TGAAAATGAAAGCACTCGAAAGATA 57.566 32.000 0.00 0.00 40.84 1.98
728 735 8.044060 TGAAAATGAAAGCACTCGAAAGATAT 57.956 30.769 0.00 0.00 40.84 1.63
729 736 9.161629 TGAAAATGAAAGCACTCGAAAGATATA 57.838 29.630 0.00 0.00 40.84 0.86
730 737 9.988350 GAAAATGAAAGCACTCGAAAGATATAA 57.012 29.630 0.00 0.00 40.84 0.98
733 740 9.774742 AATGAAAGCACTCGAAAGATATAAAAC 57.225 29.630 0.00 0.00 40.84 2.43
734 741 8.317891 TGAAAGCACTCGAAAGATATAAAACA 57.682 30.769 0.00 0.00 40.84 2.83
735 742 8.443160 TGAAAGCACTCGAAAGATATAAAACAG 58.557 33.333 0.00 0.00 40.84 3.16
736 743 6.351327 AGCACTCGAAAGATATAAAACAGC 57.649 37.500 0.00 0.00 40.84 4.40
737 744 5.005779 AGCACTCGAAAGATATAAAACAGCG 59.994 40.000 0.00 0.00 40.84 5.18
738 745 5.005394 GCACTCGAAAGATATAAAACAGCGA 59.995 40.000 0.00 0.00 40.84 4.93
739 746 6.403615 CACTCGAAAGATATAAAACAGCGAC 58.596 40.000 0.00 0.00 40.84 5.19
740 747 6.253727 CACTCGAAAGATATAAAACAGCGACT 59.746 38.462 0.00 0.00 40.84 4.18
741 748 6.472808 ACTCGAAAGATATAAAACAGCGACTC 59.527 38.462 0.00 0.00 40.84 3.36
742 749 5.747197 TCGAAAGATATAAAACAGCGACTCC 59.253 40.000 0.00 0.00 33.31 3.85
743 750 5.749109 CGAAAGATATAAAACAGCGACTCCT 59.251 40.000 0.00 0.00 0.00 3.69
744 751 6.255887 CGAAAGATATAAAACAGCGACTCCTT 59.744 38.462 0.00 0.00 0.00 3.36
745 752 6.910536 AAGATATAAAACAGCGACTCCTTG 57.089 37.500 0.00 0.00 0.00 3.61
746 753 4.811557 AGATATAAAACAGCGACTCCTTGC 59.188 41.667 0.00 0.00 0.00 4.01
747 754 2.543777 TAAAACAGCGACTCCTTGCT 57.456 45.000 0.00 0.00 43.58 3.91
748 755 1.680338 AAAACAGCGACTCCTTGCTT 58.320 45.000 0.00 0.00 40.03 3.91
749 756 1.230324 AAACAGCGACTCCTTGCTTC 58.770 50.000 0.00 0.00 40.03 3.86
750 757 0.394565 AACAGCGACTCCTTGCTTCT 59.605 50.000 0.00 0.00 40.03 2.85
751 758 0.037790 ACAGCGACTCCTTGCTTCTC 60.038 55.000 0.00 0.00 40.03 2.87
752 759 0.246086 CAGCGACTCCTTGCTTCTCT 59.754 55.000 0.00 0.00 40.03 3.10
753 760 1.474478 CAGCGACTCCTTGCTTCTCTA 59.526 52.381 0.00 0.00 40.03 2.43
754 761 2.094494 CAGCGACTCCTTGCTTCTCTAA 60.094 50.000 0.00 0.00 40.03 2.10
755 762 2.763448 AGCGACTCCTTGCTTCTCTAAT 59.237 45.455 0.00 0.00 38.57 1.73
756 763 3.120041 GCGACTCCTTGCTTCTCTAATC 58.880 50.000 0.00 0.00 0.00 1.75
757 764 3.429547 GCGACTCCTTGCTTCTCTAATCA 60.430 47.826 0.00 0.00 0.00 2.57
758 765 4.358851 CGACTCCTTGCTTCTCTAATCAG 58.641 47.826 0.00 0.00 0.00 2.90
759 766 4.692228 GACTCCTTGCTTCTCTAATCAGG 58.308 47.826 0.00 0.00 0.00 3.86
760 767 4.100373 ACTCCTTGCTTCTCTAATCAGGT 58.900 43.478 0.00 0.00 0.00 4.00
761 768 4.161377 ACTCCTTGCTTCTCTAATCAGGTC 59.839 45.833 0.00 0.00 0.00 3.85
762 769 3.452627 TCCTTGCTTCTCTAATCAGGTCC 59.547 47.826 0.00 0.00 0.00 4.46
763 770 3.454082 CCTTGCTTCTCTAATCAGGTCCT 59.546 47.826 0.00 0.00 0.00 3.85
764 771 4.442753 CCTTGCTTCTCTAATCAGGTCCTC 60.443 50.000 0.00 0.00 0.00 3.71
765 772 2.690497 TGCTTCTCTAATCAGGTCCTCG 59.310 50.000 0.00 0.00 0.00 4.63
766 773 2.952978 GCTTCTCTAATCAGGTCCTCGA 59.047 50.000 0.00 0.00 0.00 4.04
767 774 3.572255 GCTTCTCTAATCAGGTCCTCGAT 59.428 47.826 0.00 0.00 0.00 3.59
768 775 4.320935 GCTTCTCTAATCAGGTCCTCGATC 60.321 50.000 0.00 0.00 0.00 3.69
769 776 4.715534 TCTCTAATCAGGTCCTCGATCT 57.284 45.455 0.00 0.00 0.00 2.75
770 777 4.647611 TCTCTAATCAGGTCCTCGATCTC 58.352 47.826 0.00 0.00 0.00 2.75
771 778 4.349636 TCTCTAATCAGGTCCTCGATCTCT 59.650 45.833 0.00 0.00 0.00 3.10
772 779 5.544562 TCTCTAATCAGGTCCTCGATCTCTA 59.455 44.000 0.00 0.00 0.00 2.43
773 780 6.043358 TCTCTAATCAGGTCCTCGATCTCTAA 59.957 42.308 0.00 0.00 0.00 2.10
774 781 6.785076 TCTAATCAGGTCCTCGATCTCTAAT 58.215 40.000 0.00 0.00 0.00 1.73
775 782 7.919151 TCTAATCAGGTCCTCGATCTCTAATA 58.081 38.462 0.00 0.00 0.00 0.98
776 783 8.383947 TCTAATCAGGTCCTCGATCTCTAATAA 58.616 37.037 0.00 0.00 0.00 1.40
777 784 7.841282 AATCAGGTCCTCGATCTCTAATAAA 57.159 36.000 0.00 0.00 0.00 1.40
778 785 8.429237 AATCAGGTCCTCGATCTCTAATAAAT 57.571 34.615 0.00 0.00 0.00 1.40
779 786 7.455641 TCAGGTCCTCGATCTCTAATAAATC 57.544 40.000 0.00 0.00 0.00 2.17
780 787 7.235079 TCAGGTCCTCGATCTCTAATAAATCT 58.765 38.462 0.00 0.00 0.00 2.40
781 788 7.175816 TCAGGTCCTCGATCTCTAATAAATCTG 59.824 40.741 0.00 0.00 0.00 2.90
782 789 7.175816 CAGGTCCTCGATCTCTAATAAATCTGA 59.824 40.741 0.00 0.00 0.00 3.27
783 790 7.726291 AGGTCCTCGATCTCTAATAAATCTGAA 59.274 37.037 0.00 0.00 0.00 3.02
784 791 8.361139 GGTCCTCGATCTCTAATAAATCTGAAA 58.639 37.037 0.00 0.00 0.00 2.69
785 792 9.405587 GTCCTCGATCTCTAATAAATCTGAAAG 57.594 37.037 0.00 0.00 0.00 2.62
885 913 5.833131 AGTACATGGGCCCAACATATTAAAG 59.167 40.000 32.58 10.69 0.00 1.85
891 919 6.678547 TGGGCCCAACATATTAAAGTATTCT 58.321 36.000 26.33 0.00 0.00 2.40
896 937 9.220767 GCCCAACATATTAAAGTATTCTAGGAG 57.779 37.037 0.00 0.00 0.00 3.69
938 979 2.278330 GCCAGCCCAACTTCCCTTG 61.278 63.158 0.00 0.00 0.00 3.61
1044 1096 1.749638 GCTGCTGATGCTCCTGCTT 60.750 57.895 0.00 0.00 40.48 3.91
1323 1375 2.182030 CTCGACCAGGTCTTCGGC 59.818 66.667 17.95 0.00 35.89 5.54
1389 1441 2.100631 CACCATGTCGGGCTTCGTC 61.101 63.158 0.00 0.00 40.22 4.20
2178 2230 3.866582 CACTCCTCCATCCCGGCC 61.867 72.222 0.00 0.00 33.14 6.13
2208 2260 5.612725 AGAAGATCTTCAACCTCAGATCC 57.387 43.478 31.79 6.10 44.59 3.36
2211 2263 3.383185 AGATCTTCAACCTCAGATCCGAC 59.617 47.826 5.70 0.00 44.59 4.79
2220 2272 1.064803 CTCAGATCCGACTTCCTCACG 59.935 57.143 0.00 0.00 0.00 4.35
2226 2278 1.000506 TCCGACTTCCTCACGAAAAGG 59.999 52.381 0.00 0.00 35.05 3.11
2229 2281 2.353803 CGACTTCCTCACGAAAAGGGAT 60.354 50.000 0.00 0.00 34.46 3.85
2265 2317 2.189594 TTGAGCACATCTTCACCCAG 57.810 50.000 0.00 0.00 0.00 4.45
2268 2320 0.403271 AGCACATCTTCACCCAGCTT 59.597 50.000 0.00 0.00 0.00 3.74
2326 2378 3.443037 GAGGATCTCTCACATGAACACG 58.557 50.000 0.00 0.00 42.02 4.49
2335 2387 2.158559 CACATGAACACGATGGGGAAA 58.841 47.619 0.00 0.00 0.00 3.13
2338 2390 3.831911 ACATGAACACGATGGGGAAATTT 59.168 39.130 0.00 0.00 0.00 1.82
2339 2391 4.283212 ACATGAACACGATGGGGAAATTTT 59.717 37.500 0.00 0.00 0.00 1.82
2395 2478 7.896383 AGAAGAATTATAGTCAGAGCTCACT 57.104 36.000 17.77 13.99 0.00 3.41
2396 2479 8.305046 AGAAGAATTATAGTCAGAGCTCACTT 57.695 34.615 17.77 5.51 0.00 3.16
2397 2480 9.415008 AGAAGAATTATAGTCAGAGCTCACTTA 57.585 33.333 17.77 3.18 0.00 2.24
2404 2487 9.751542 TTATAGTCAGAGCTCACTTAATTTAGC 57.248 33.333 17.77 0.00 35.16 3.09
2405 2488 6.042638 AGTCAGAGCTCACTTAATTTAGCA 57.957 37.500 17.77 0.00 37.44 3.49
2406 2489 6.105333 AGTCAGAGCTCACTTAATTTAGCAG 58.895 40.000 17.77 0.00 37.44 4.24
2407 2490 6.071108 AGTCAGAGCTCACTTAATTTAGCAGA 60.071 38.462 17.77 0.00 37.44 4.26
2408 2491 6.591834 GTCAGAGCTCACTTAATTTAGCAGAA 59.408 38.462 17.77 0.00 37.44 3.02
2409 2492 7.279758 GTCAGAGCTCACTTAATTTAGCAGAAT 59.720 37.037 17.77 0.00 37.44 2.40
2410 2493 7.493971 TCAGAGCTCACTTAATTTAGCAGAATC 59.506 37.037 17.77 0.00 37.44 2.52
2411 2494 7.279536 CAGAGCTCACTTAATTTAGCAGAATCA 59.720 37.037 17.77 0.00 37.44 2.57
2412 2495 7.992033 AGAGCTCACTTAATTTAGCAGAATCAT 59.008 33.333 17.77 0.00 37.44 2.45
2413 2496 9.265901 GAGCTCACTTAATTTAGCAGAATCATA 57.734 33.333 9.40 0.00 37.44 2.15
2414 2497 9.050601 AGCTCACTTAATTTAGCAGAATCATAC 57.949 33.333 2.34 0.00 37.44 2.39
2415 2498 9.050601 GCTCACTTAATTTAGCAGAATCATACT 57.949 33.333 0.00 0.00 35.05 2.12
2484 2567 4.573900 AGGATCTCTCACATGAACACAAC 58.426 43.478 0.00 0.00 0.00 3.32
2549 2632 8.028354 CCACTTATTCAGATGCTCTCTACATAG 58.972 40.741 0.00 0.00 31.13 2.23
2559 2642 5.655488 TGCTCTCTACATAGTTTGAAGCTC 58.345 41.667 0.00 0.00 0.00 4.09
2560 2643 5.185828 TGCTCTCTACATAGTTTGAAGCTCA 59.814 40.000 0.00 0.00 0.00 4.26
2581 2666 6.765036 GCTCAAGAGTATGAATGAAGAATGGA 59.235 38.462 0.00 0.00 0.00 3.41
2736 2821 1.940613 AGAACAACACCAGCGAAAGAC 59.059 47.619 0.00 0.00 0.00 3.01
2814 2899 0.640768 GCGACTACATGTTGACGAGC 59.359 55.000 28.29 16.54 31.68 5.03
2862 2947 3.414700 GTGAAGCAGGCCGACACG 61.415 66.667 0.00 0.00 0.00 4.49
2882 2967 2.464865 GTATGTGAGACGAGCCATCAC 58.535 52.381 0.00 0.00 42.90 3.06
2987 3072 4.737578 AGTAAGAGTACCACCTCAAGTCA 58.262 43.478 0.00 0.00 33.75 3.41
3300 3391 6.012658 TGTCTTTGACAAATGATTACCTGC 57.987 37.500 0.05 0.00 39.78 4.85
3305 3396 2.747446 GACAAATGATTACCTGCGGTGT 59.253 45.455 10.01 1.65 36.19 4.16
3308 3399 3.848272 AATGATTACCTGCGGTGTTTG 57.152 42.857 10.01 0.00 36.19 2.93
3309 3400 2.264005 TGATTACCTGCGGTGTTTGT 57.736 45.000 10.01 0.00 36.19 2.83
3312 3403 2.853731 TTACCTGCGGTGTTTGTTTG 57.146 45.000 10.01 0.00 36.19 2.93
3313 3404 1.752683 TACCTGCGGTGTTTGTTTGT 58.247 45.000 10.01 0.00 36.19 2.83
3317 3408 3.056749 ACCTGCGGTGTTTGTTTGTTTTA 60.057 39.130 0.00 0.00 32.98 1.52
3318 3409 3.304826 CCTGCGGTGTTTGTTTGTTTTAC 59.695 43.478 0.00 0.00 0.00 2.01
3319 3410 3.909430 TGCGGTGTTTGTTTGTTTTACA 58.091 36.364 0.00 0.00 0.00 2.41
3320 3411 3.921021 TGCGGTGTTTGTTTGTTTTACAG 59.079 39.130 0.00 0.00 0.00 2.74
3343 3434 7.868415 ACAGTAGTTTATTGTTCACTGAGACTC 59.132 37.037 6.54 0.00 37.44 3.36
3349 3440 3.407424 TGTTCACTGAGACTCATTGGG 57.593 47.619 19.39 5.43 29.31 4.12
3374 3465 8.432013 GGGGGATGCATAAAATTTATCTTCTTT 58.568 33.333 0.00 0.00 0.00 2.52
3487 3586 9.529325 CCTATTAAGTAGTCAACATTTCGATCA 57.471 33.333 0.00 0.00 0.00 2.92
3528 3627 5.987098 AGCATGATCATCTGAAACACTAGT 58.013 37.500 4.86 0.00 0.00 2.57
3622 3724 4.251268 GGTCAAGTACCTTGTGACATACC 58.749 47.826 14.75 7.03 45.75 2.73
3645 3747 1.345715 AACTGAATAGGGGCCTCCGG 61.346 60.000 0.00 0.00 41.52 5.14
3646 3748 1.766461 CTGAATAGGGGCCTCCGGT 60.766 63.158 0.00 0.00 41.52 5.28
3677 3779 2.008242 TACAGCCCTGTTTGCCAATT 57.992 45.000 6.21 0.00 41.83 2.32
3734 3836 3.066380 GCGGACCATTTGCTTGAATTTT 58.934 40.909 0.00 0.00 0.00 1.82
3782 3884 4.426736 AACGATAAATTACGGGGGACAT 57.573 40.909 0.00 0.00 0.00 3.06
3851 3953 6.403049 TGTTGTTCACTGAGAAAGTTAGACA 58.597 36.000 0.00 0.00 36.83 3.41
3853 3955 5.601662 TGTTCACTGAGAAAGTTAGACAGG 58.398 41.667 0.00 0.00 36.83 4.00
3906 4008 7.495934 TGGACATAATCAAGCTTAGCTTCTTAC 59.504 37.037 17.37 6.79 46.77 2.34
3907 4009 7.713073 GGACATAATCAAGCTTAGCTTCTTACT 59.287 37.037 17.37 6.93 46.77 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 1.967066 ACTATCCTCTCAATGAGCCCG 59.033 52.381 5.18 0.00 41.35 6.13
22 23 1.860641 TTCCGCCACTATCCTCTCAA 58.139 50.000 0.00 0.00 0.00 3.02
33 34 1.301479 AGTCGTTCCTTTCCGCCAC 60.301 57.895 0.00 0.00 0.00 5.01
47 48 2.913054 ATCCAGCACGATGCCAGTCG 62.913 60.000 6.39 2.25 46.52 4.18
61 62 3.539604 CAGTCTCCCTTAAGCAATCCAG 58.460 50.000 0.00 0.00 0.00 3.86
98 99 2.213499 CTCGCCCACCTTAATAGCTTG 58.787 52.381 0.00 0.00 0.00 4.01
99 100 1.475213 GCTCGCCCACCTTAATAGCTT 60.475 52.381 0.00 0.00 0.00 3.74
121 122 6.563222 AGAACATAATCTAGGACTACTCGC 57.437 41.667 0.00 0.00 0.00 5.03
144 145 2.427453 GCTTCCATGTCTACTCGGAGAA 59.573 50.000 12.86 0.00 34.09 2.87
160 161 3.205784 ACTATCATGAGCCAAGCTTCC 57.794 47.619 0.09 0.00 39.88 3.46
162 163 7.941238 ACATATAAACTATCATGAGCCAAGCTT 59.059 33.333 0.09 0.00 39.88 3.74
202 203 6.037391 CCAAATTTTATACGCGGAGTAAAGGA 59.963 38.462 12.47 0.00 39.04 3.36
203 204 6.183360 ACCAAATTTTATACGCGGAGTAAAGG 60.183 38.462 12.47 11.58 39.04 3.11
204 205 6.778108 ACCAAATTTTATACGCGGAGTAAAG 58.222 36.000 12.47 3.45 39.04 1.85
437 441 3.641906 CCATAGATGTTACTCCCTTCGGT 59.358 47.826 0.00 0.00 0.00 4.69
438 442 3.641906 ACCATAGATGTTACTCCCTTCGG 59.358 47.826 0.00 0.00 0.00 4.30
439 443 4.501571 CCACCATAGATGTTACTCCCTTCG 60.502 50.000 0.00 0.00 0.00 3.79
440 444 4.654262 TCCACCATAGATGTTACTCCCTTC 59.346 45.833 0.00 0.00 0.00 3.46
441 445 4.631234 TCCACCATAGATGTTACTCCCTT 58.369 43.478 0.00 0.00 0.00 3.95
504 510 1.400142 TCTTGAACACGCACAACTTGG 59.600 47.619 0.00 0.00 0.00 3.61
530 537 9.850198 AAGAAATCTTTCCAAAAATCATCCAAA 57.150 25.926 0.00 0.00 37.92 3.28
566 573 9.797556 GGGTCCAGTGTATAAATAAAAACATTC 57.202 33.333 0.00 0.00 0.00 2.67
567 574 9.315363 TGGGTCCAGTGTATAAATAAAAACATT 57.685 29.630 0.00 0.00 0.00 2.71
568 575 8.887264 TGGGTCCAGTGTATAAATAAAAACAT 57.113 30.769 0.00 0.00 0.00 2.71
569 576 7.094118 GCTGGGTCCAGTGTATAAATAAAAACA 60.094 37.037 17.28 0.00 45.24 2.83
570 577 7.094118 TGCTGGGTCCAGTGTATAAATAAAAAC 60.094 37.037 17.28 0.00 45.24 2.43
571 578 6.948886 TGCTGGGTCCAGTGTATAAATAAAAA 59.051 34.615 17.28 0.00 45.24 1.94
572 579 6.486056 TGCTGGGTCCAGTGTATAAATAAAA 58.514 36.000 17.28 0.00 45.24 1.52
573 580 6.068461 TGCTGGGTCCAGTGTATAAATAAA 57.932 37.500 17.28 0.00 45.24 1.40
574 581 5.702065 TGCTGGGTCCAGTGTATAAATAA 57.298 39.130 17.28 0.00 45.24 1.40
575 582 5.702065 TTGCTGGGTCCAGTGTATAAATA 57.298 39.130 17.28 0.00 45.24 1.40
576 583 4.584638 TTGCTGGGTCCAGTGTATAAAT 57.415 40.909 17.28 0.00 45.24 1.40
577 584 4.584638 ATTGCTGGGTCCAGTGTATAAA 57.415 40.909 17.28 4.90 45.24 1.40
578 585 5.904984 ATATTGCTGGGTCCAGTGTATAA 57.095 39.130 17.28 6.95 45.24 0.98
579 586 6.557253 AGTTATATTGCTGGGTCCAGTGTATA 59.443 38.462 17.28 13.41 45.24 1.47
580 587 5.369699 AGTTATATTGCTGGGTCCAGTGTAT 59.630 40.000 17.28 14.18 45.24 2.29
581 588 4.719773 AGTTATATTGCTGGGTCCAGTGTA 59.280 41.667 17.28 9.02 45.24 2.90
582 589 3.523564 AGTTATATTGCTGGGTCCAGTGT 59.476 43.478 17.28 7.33 45.24 3.55
583 590 4.130118 GAGTTATATTGCTGGGTCCAGTG 58.870 47.826 17.28 0.00 45.24 3.66
584 591 3.136626 GGAGTTATATTGCTGGGTCCAGT 59.863 47.826 17.28 1.86 45.24 4.00
585 592 3.744660 GGAGTTATATTGCTGGGTCCAG 58.255 50.000 12.42 12.42 46.15 3.86
586 593 2.104111 CGGAGTTATATTGCTGGGTCCA 59.896 50.000 0.00 0.00 0.00 4.02
587 594 2.550208 CCGGAGTTATATTGCTGGGTCC 60.550 54.545 0.00 0.00 0.00 4.46
588 595 2.767505 CCGGAGTTATATTGCTGGGTC 58.232 52.381 0.00 0.00 0.00 4.46
589 596 1.202770 GCCGGAGTTATATTGCTGGGT 60.203 52.381 5.05 0.00 0.00 4.51
590 597 1.202758 TGCCGGAGTTATATTGCTGGG 60.203 52.381 5.05 0.00 0.00 4.45
591 598 2.254546 TGCCGGAGTTATATTGCTGG 57.745 50.000 5.05 0.00 0.00 4.85
592 599 5.940192 TTTATGCCGGAGTTATATTGCTG 57.060 39.130 5.05 0.00 0.00 4.41
593 600 6.714810 TGAATTTATGCCGGAGTTATATTGCT 59.285 34.615 5.05 0.00 0.00 3.91
594 601 6.801862 GTGAATTTATGCCGGAGTTATATTGC 59.198 38.462 5.05 0.00 0.00 3.56
595 602 7.305474 GGTGAATTTATGCCGGAGTTATATTG 58.695 38.462 5.05 0.00 0.00 1.90
596 603 6.433093 GGGTGAATTTATGCCGGAGTTATATT 59.567 38.462 5.05 0.00 0.00 1.28
597 604 5.944007 GGGTGAATTTATGCCGGAGTTATAT 59.056 40.000 5.05 0.00 0.00 0.86
598 605 5.310451 GGGTGAATTTATGCCGGAGTTATA 58.690 41.667 5.05 0.00 0.00 0.98
599 606 4.142038 GGGTGAATTTATGCCGGAGTTAT 58.858 43.478 5.05 0.00 0.00 1.89
600 607 3.547746 GGGTGAATTTATGCCGGAGTTA 58.452 45.455 5.05 0.00 0.00 2.24
601 608 2.375146 GGGTGAATTTATGCCGGAGTT 58.625 47.619 5.05 0.00 0.00 3.01
602 609 1.409661 GGGGTGAATTTATGCCGGAGT 60.410 52.381 5.05 0.00 0.00 3.85
603 610 1.318576 GGGGTGAATTTATGCCGGAG 58.681 55.000 5.05 0.00 0.00 4.63
604 611 0.626382 TGGGGTGAATTTATGCCGGA 59.374 50.000 5.05 0.00 0.00 5.14
605 612 1.479709 TTGGGGTGAATTTATGCCGG 58.520 50.000 0.00 0.00 0.00 6.13
606 613 2.232452 TGTTTGGGGTGAATTTATGCCG 59.768 45.455 0.00 0.00 0.00 5.69
607 614 3.971245 TGTTTGGGGTGAATTTATGCC 57.029 42.857 0.00 0.00 0.00 4.40
608 615 4.636249 TGTTGTTTGGGGTGAATTTATGC 58.364 39.130 0.00 0.00 0.00 3.14
609 616 5.237048 CCTGTTGTTTGGGGTGAATTTATG 58.763 41.667 0.00 0.00 0.00 1.90
610 617 4.285775 CCCTGTTGTTTGGGGTGAATTTAT 59.714 41.667 0.00 0.00 39.76 1.40
611 618 3.643792 CCCTGTTGTTTGGGGTGAATTTA 59.356 43.478 0.00 0.00 39.76 1.40
612 619 2.437651 CCCTGTTGTTTGGGGTGAATTT 59.562 45.455 0.00 0.00 39.76 1.82
613 620 2.046292 CCCTGTTGTTTGGGGTGAATT 58.954 47.619 0.00 0.00 39.76 2.17
614 621 1.715785 CCCTGTTGTTTGGGGTGAAT 58.284 50.000 0.00 0.00 39.76 2.57
615 622 3.215671 CCCTGTTGTTTGGGGTGAA 57.784 52.632 0.00 0.00 39.76 3.18
620 627 0.889186 CGAGACCCCTGTTGTTTGGG 60.889 60.000 0.00 0.00 45.34 4.12
621 628 0.889186 CCGAGACCCCTGTTGTTTGG 60.889 60.000 0.00 0.00 0.00 3.28
622 629 1.515521 GCCGAGACCCCTGTTGTTTG 61.516 60.000 0.00 0.00 0.00 2.93
623 630 1.228154 GCCGAGACCCCTGTTGTTT 60.228 57.895 0.00 0.00 0.00 2.83
624 631 2.430367 GCCGAGACCCCTGTTGTT 59.570 61.111 0.00 0.00 0.00 2.83
625 632 3.637273 GGCCGAGACCCCTGTTGT 61.637 66.667 0.00 0.00 0.00 3.32
626 633 2.690653 TTTGGCCGAGACCCCTGTTG 62.691 60.000 0.00 0.00 0.00 3.33
627 634 2.457323 TTTGGCCGAGACCCCTGTT 61.457 57.895 0.00 0.00 0.00 3.16
628 635 2.852075 TTTGGCCGAGACCCCTGT 60.852 61.111 0.00 0.00 0.00 4.00
629 636 2.359975 GTTTGGCCGAGACCCCTG 60.360 66.667 0.00 0.00 0.00 4.45
630 637 3.647771 GGTTTGGCCGAGACCCCT 61.648 66.667 10.12 0.00 0.00 4.79
631 638 1.917336 TATGGTTTGGCCGAGACCCC 61.917 60.000 16.63 6.38 41.21 4.95
632 639 0.034863 TTATGGTTTGGCCGAGACCC 60.035 55.000 16.63 8.56 41.21 4.46
633 640 1.092348 GTTATGGTTTGGCCGAGACC 58.908 55.000 13.48 13.48 41.21 3.85
634 641 1.092348 GGTTATGGTTTGGCCGAGAC 58.908 55.000 0.00 0.00 41.21 3.36
635 642 0.693622 TGGTTATGGTTTGGCCGAGA 59.306 50.000 0.00 0.00 41.21 4.04
636 643 1.762708 ATGGTTATGGTTTGGCCGAG 58.237 50.000 0.00 0.00 41.21 4.63
637 644 2.645802 GTATGGTTATGGTTTGGCCGA 58.354 47.619 0.00 0.00 41.21 5.54
638 645 1.679153 GGTATGGTTATGGTTTGGCCG 59.321 52.381 0.00 0.00 41.21 6.13
639 646 2.956333 GAGGTATGGTTATGGTTTGGCC 59.044 50.000 0.00 0.00 37.90 5.36
640 647 2.616842 CGAGGTATGGTTATGGTTTGGC 59.383 50.000 0.00 0.00 0.00 4.52
641 648 2.616842 GCGAGGTATGGTTATGGTTTGG 59.383 50.000 0.00 0.00 0.00 3.28
642 649 3.275143 TGCGAGGTATGGTTATGGTTTG 58.725 45.455 0.00 0.00 0.00 2.93
643 650 3.637911 TGCGAGGTATGGTTATGGTTT 57.362 42.857 0.00 0.00 0.00 3.27
644 651 3.199071 TCTTGCGAGGTATGGTTATGGTT 59.801 43.478 0.00 0.00 0.00 3.67
645 652 2.769663 TCTTGCGAGGTATGGTTATGGT 59.230 45.455 0.00 0.00 0.00 3.55
646 653 3.469008 TCTTGCGAGGTATGGTTATGG 57.531 47.619 0.00 0.00 0.00 2.74
647 654 4.188462 TGTTCTTGCGAGGTATGGTTATG 58.812 43.478 0.00 0.00 0.00 1.90
648 655 4.481368 TGTTCTTGCGAGGTATGGTTAT 57.519 40.909 0.00 0.00 0.00 1.89
649 656 3.965379 TGTTCTTGCGAGGTATGGTTA 57.035 42.857 0.00 0.00 0.00 2.85
650 657 2.851263 TGTTCTTGCGAGGTATGGTT 57.149 45.000 0.00 0.00 0.00 3.67
651 658 2.632377 CATGTTCTTGCGAGGTATGGT 58.368 47.619 0.00 0.00 0.00 3.55
652 659 1.331756 GCATGTTCTTGCGAGGTATGG 59.668 52.381 0.00 0.00 32.06 2.74
653 660 2.744787 GCATGTTCTTGCGAGGTATG 57.255 50.000 0.00 5.08 32.06 2.39
661 668 0.798776 AGTGTAGCGCATGTTCTTGC 59.201 50.000 11.47 0.00 39.29 4.01
662 669 4.581493 CAATAGTGTAGCGCATGTTCTTG 58.419 43.478 11.47 0.96 0.00 3.02
663 670 3.063997 GCAATAGTGTAGCGCATGTTCTT 59.936 43.478 11.47 0.00 0.00 2.52
664 671 2.609459 GCAATAGTGTAGCGCATGTTCT 59.391 45.455 11.47 3.70 0.00 3.01
665 672 2.351418 TGCAATAGTGTAGCGCATGTTC 59.649 45.455 11.47 0.00 0.00 3.18
666 673 2.095853 GTGCAATAGTGTAGCGCATGTT 59.904 45.455 11.47 0.00 38.56 2.71
667 674 1.665679 GTGCAATAGTGTAGCGCATGT 59.334 47.619 11.47 0.00 38.56 3.21
668 675 1.665169 TGTGCAATAGTGTAGCGCATG 59.335 47.619 11.47 0.00 43.05 4.06
669 676 2.022764 TGTGCAATAGTGTAGCGCAT 57.977 45.000 11.47 0.00 43.05 4.73
670 677 3.523806 TGTGCAATAGTGTAGCGCA 57.476 47.368 11.47 0.00 45.37 6.09
671 678 3.740832 TCATATGTGCAATAGTGTAGCGC 59.259 43.478 0.00 0.00 39.12 5.92
672 679 4.143535 CGTCATATGTGCAATAGTGTAGCG 60.144 45.833 1.90 0.00 0.00 4.26
673 680 4.982295 TCGTCATATGTGCAATAGTGTAGC 59.018 41.667 1.90 0.00 0.00 3.58
674 681 5.977129 TGTCGTCATATGTGCAATAGTGTAG 59.023 40.000 1.90 0.00 0.00 2.74
675 682 5.897050 TGTCGTCATATGTGCAATAGTGTA 58.103 37.500 1.90 0.00 0.00 2.90
676 683 4.754322 TGTCGTCATATGTGCAATAGTGT 58.246 39.130 1.90 0.00 0.00 3.55
677 684 5.717038 TTGTCGTCATATGTGCAATAGTG 57.283 39.130 1.90 0.00 0.00 2.74
678 685 5.277490 GCATTGTCGTCATATGTGCAATAGT 60.277 40.000 1.90 0.00 0.00 2.12
679 686 5.049886 AGCATTGTCGTCATATGTGCAATAG 60.050 40.000 12.91 9.85 33.80 1.73
680 687 4.815846 AGCATTGTCGTCATATGTGCAATA 59.184 37.500 12.91 0.00 33.80 1.90
681 688 3.628942 AGCATTGTCGTCATATGTGCAAT 59.371 39.130 12.91 10.93 33.80 3.56
682 689 3.009026 AGCATTGTCGTCATATGTGCAA 58.991 40.909 12.91 9.51 33.80 4.08
683 690 2.352342 CAGCATTGTCGTCATATGTGCA 59.648 45.455 12.91 0.00 33.80 4.57
684 691 2.609002 TCAGCATTGTCGTCATATGTGC 59.391 45.455 1.90 3.42 0.00 4.57
685 692 4.863152 TTCAGCATTGTCGTCATATGTG 57.137 40.909 1.90 0.00 0.00 3.21
686 693 5.878332 TTTTCAGCATTGTCGTCATATGT 57.122 34.783 1.90 0.00 0.00 2.29
687 694 6.488817 TCATTTTCAGCATTGTCGTCATATG 58.511 36.000 0.00 0.00 0.00 1.78
688 695 6.682423 TCATTTTCAGCATTGTCGTCATAT 57.318 33.333 0.00 0.00 0.00 1.78
689 696 6.493449 TTCATTTTCAGCATTGTCGTCATA 57.507 33.333 0.00 0.00 0.00 2.15
690 697 5.375417 TTCATTTTCAGCATTGTCGTCAT 57.625 34.783 0.00 0.00 0.00 3.06
691 698 4.827304 TTCATTTTCAGCATTGTCGTCA 57.173 36.364 0.00 0.00 0.00 4.35
692 699 4.089065 GCTTTCATTTTCAGCATTGTCGTC 59.911 41.667 0.00 0.00 33.45 4.20
693 700 3.983344 GCTTTCATTTTCAGCATTGTCGT 59.017 39.130 0.00 0.00 33.45 4.34
694 701 3.982701 TGCTTTCATTTTCAGCATTGTCG 59.017 39.130 0.00 0.00 38.65 4.35
695 702 4.986659 AGTGCTTTCATTTTCAGCATTGTC 59.013 37.500 0.00 0.00 45.09 3.18
696 703 4.952460 AGTGCTTTCATTTTCAGCATTGT 58.048 34.783 0.00 0.00 45.09 2.71
697 704 4.089493 CGAGTGCTTTCATTTTCAGCATTG 59.911 41.667 0.00 0.00 45.09 2.82
698 705 4.022935 TCGAGTGCTTTCATTTTCAGCATT 60.023 37.500 0.00 0.00 45.09 3.56
699 706 3.503363 TCGAGTGCTTTCATTTTCAGCAT 59.497 39.130 0.00 0.00 45.09 3.79
700 707 2.877786 TCGAGTGCTTTCATTTTCAGCA 59.122 40.909 0.00 0.00 41.30 4.41
701 708 3.542712 TCGAGTGCTTTCATTTTCAGC 57.457 42.857 0.00 0.00 0.00 4.26
702 709 5.751680 TCTTTCGAGTGCTTTCATTTTCAG 58.248 37.500 0.00 0.00 0.00 3.02
703 710 5.749596 TCTTTCGAGTGCTTTCATTTTCA 57.250 34.783 0.00 0.00 0.00 2.69
704 711 9.988350 TTATATCTTTCGAGTGCTTTCATTTTC 57.012 29.630 0.00 0.00 0.00 2.29
707 714 9.774742 GTTTTATATCTTTCGAGTGCTTTCATT 57.225 29.630 0.00 0.00 0.00 2.57
708 715 8.946085 TGTTTTATATCTTTCGAGTGCTTTCAT 58.054 29.630 0.00 0.00 0.00 2.57
709 716 8.317891 TGTTTTATATCTTTCGAGTGCTTTCA 57.682 30.769 0.00 0.00 0.00 2.69
710 717 7.426743 GCTGTTTTATATCTTTCGAGTGCTTTC 59.573 37.037 0.00 0.00 0.00 2.62
711 718 7.244192 GCTGTTTTATATCTTTCGAGTGCTTT 58.756 34.615 0.00 0.00 0.00 3.51
712 719 6.455646 CGCTGTTTTATATCTTTCGAGTGCTT 60.456 38.462 0.00 0.00 0.00 3.91
713 720 5.005779 CGCTGTTTTATATCTTTCGAGTGCT 59.994 40.000 0.00 0.00 0.00 4.40
714 721 5.005394 TCGCTGTTTTATATCTTTCGAGTGC 59.995 40.000 0.00 0.00 0.00 4.40
715 722 6.253727 AGTCGCTGTTTTATATCTTTCGAGTG 59.746 38.462 0.00 0.00 0.00 3.51
716 723 6.331061 AGTCGCTGTTTTATATCTTTCGAGT 58.669 36.000 0.00 0.00 0.00 4.18
717 724 6.074782 GGAGTCGCTGTTTTATATCTTTCGAG 60.075 42.308 0.00 0.00 0.00 4.04
718 725 5.747197 GGAGTCGCTGTTTTATATCTTTCGA 59.253 40.000 0.00 0.00 0.00 3.71
719 726 5.749109 AGGAGTCGCTGTTTTATATCTTTCG 59.251 40.000 0.00 0.00 0.00 3.46
720 727 7.402640 CAAGGAGTCGCTGTTTTATATCTTTC 58.597 38.462 0.00 0.00 0.00 2.62
721 728 6.183360 GCAAGGAGTCGCTGTTTTATATCTTT 60.183 38.462 0.00 0.00 0.00 2.52
722 729 5.294552 GCAAGGAGTCGCTGTTTTATATCTT 59.705 40.000 0.00 0.00 0.00 2.40
723 730 4.811557 GCAAGGAGTCGCTGTTTTATATCT 59.188 41.667 0.00 0.00 0.00 1.98
724 731 4.811557 AGCAAGGAGTCGCTGTTTTATATC 59.188 41.667 0.00 0.00 37.02 1.63
725 732 4.770795 AGCAAGGAGTCGCTGTTTTATAT 58.229 39.130 0.00 0.00 37.02 0.86
726 733 4.202245 AGCAAGGAGTCGCTGTTTTATA 57.798 40.909 0.00 0.00 37.02 0.98
727 734 3.059352 AGCAAGGAGTCGCTGTTTTAT 57.941 42.857 0.00 0.00 37.02 1.40
728 735 2.543777 AGCAAGGAGTCGCTGTTTTA 57.456 45.000 0.00 0.00 37.02 1.52
729 736 1.604278 GAAGCAAGGAGTCGCTGTTTT 59.396 47.619 0.00 0.00 38.82 2.43
730 737 1.202698 AGAAGCAAGGAGTCGCTGTTT 60.203 47.619 0.00 0.00 38.82 2.83
731 738 0.394565 AGAAGCAAGGAGTCGCTGTT 59.605 50.000 0.00 0.00 38.82 3.16
732 739 0.037790 GAGAAGCAAGGAGTCGCTGT 60.038 55.000 0.00 0.00 38.82 4.40
733 740 0.246086 AGAGAAGCAAGGAGTCGCTG 59.754 55.000 0.00 0.00 38.82 5.18
734 741 1.840737 TAGAGAAGCAAGGAGTCGCT 58.159 50.000 0.00 0.00 41.20 4.93
735 742 2.656560 TTAGAGAAGCAAGGAGTCGC 57.343 50.000 0.00 0.00 0.00 5.19
736 743 4.358851 CTGATTAGAGAAGCAAGGAGTCG 58.641 47.826 0.00 0.00 28.70 4.18
737 744 4.161377 ACCTGATTAGAGAAGCAAGGAGTC 59.839 45.833 0.00 0.00 28.70 3.36
738 745 4.100373 ACCTGATTAGAGAAGCAAGGAGT 58.900 43.478 0.00 0.00 28.70 3.85
739 746 4.442753 GGACCTGATTAGAGAAGCAAGGAG 60.443 50.000 0.00 0.00 28.70 3.69
740 747 3.452627 GGACCTGATTAGAGAAGCAAGGA 59.547 47.826 0.00 0.00 28.70 3.36
741 748 3.454082 AGGACCTGATTAGAGAAGCAAGG 59.546 47.826 0.00 0.00 28.70 3.61
742 749 4.692228 GAGGACCTGATTAGAGAAGCAAG 58.308 47.826 0.00 0.00 28.70 4.01
743 750 3.131223 CGAGGACCTGATTAGAGAAGCAA 59.869 47.826 0.00 0.00 28.70 3.91
744 751 2.690497 CGAGGACCTGATTAGAGAAGCA 59.310 50.000 0.00 0.00 0.00 3.91
745 752 2.952978 TCGAGGACCTGATTAGAGAAGC 59.047 50.000 0.00 0.00 0.00 3.86
746 753 5.070001 AGATCGAGGACCTGATTAGAGAAG 58.930 45.833 0.00 0.00 0.00 2.85
747 754 5.055265 AGATCGAGGACCTGATTAGAGAA 57.945 43.478 0.00 0.00 0.00 2.87
748 755 4.349636 AGAGATCGAGGACCTGATTAGAGA 59.650 45.833 0.00 0.00 0.00 3.10
749 756 4.651778 AGAGATCGAGGACCTGATTAGAG 58.348 47.826 0.00 0.00 0.00 2.43
750 757 4.715534 AGAGATCGAGGACCTGATTAGA 57.284 45.455 0.00 0.00 0.00 2.10
751 758 8.568676 TTATTAGAGATCGAGGACCTGATTAG 57.431 38.462 0.00 0.00 0.00 1.73
752 759 8.935614 TTTATTAGAGATCGAGGACCTGATTA 57.064 34.615 0.00 0.00 0.00 1.75
753 760 7.841282 TTTATTAGAGATCGAGGACCTGATT 57.159 36.000 0.00 0.00 0.00 2.57
754 761 7.893302 AGATTTATTAGAGATCGAGGACCTGAT 59.107 37.037 0.00 2.13 0.00 2.90
755 762 7.175816 CAGATTTATTAGAGATCGAGGACCTGA 59.824 40.741 0.00 0.00 0.00 3.86
756 763 7.175816 TCAGATTTATTAGAGATCGAGGACCTG 59.824 40.741 0.00 0.00 0.00 4.00
757 764 7.235079 TCAGATTTATTAGAGATCGAGGACCT 58.765 38.462 0.00 0.00 0.00 3.85
758 765 7.455641 TCAGATTTATTAGAGATCGAGGACC 57.544 40.000 0.00 0.00 0.00 4.46
759 766 9.405587 CTTTCAGATTTATTAGAGATCGAGGAC 57.594 37.037 0.00 0.00 0.00 3.85
760 767 9.355916 TCTTTCAGATTTATTAGAGATCGAGGA 57.644 33.333 0.00 0.00 0.00 3.71
885 913 4.763793 TGGCGGTATACACTCCTAGAATAC 59.236 45.833 5.01 0.00 0.00 1.89
891 919 3.431207 GCTTTTGGCGGTATACACTCCTA 60.431 47.826 5.01 0.00 0.00 2.94
896 937 2.825086 CTGCTTTTGGCGGTATACAC 57.175 50.000 5.01 0.00 45.43 2.90
1029 1081 1.152989 CGAGAAGCAGGAGCATCAGC 61.153 60.000 0.00 0.00 45.49 4.26
1077 1129 3.787001 GGGCTTGCTCCGCTAGGT 61.787 66.667 0.00 0.00 39.05 3.08
1323 1375 2.359975 GTGGAGTTGGGGCGGAAG 60.360 66.667 0.00 0.00 0.00 3.46
2070 2122 2.746142 CGATACCATCATTGTGGGCACT 60.746 50.000 9.22 0.00 43.77 4.40
2178 2230 5.251764 AGGTTGAAGATCTTCTTGATGGTG 58.748 41.667 30.45 0.00 36.73 4.17
2208 2260 1.000506 TCCCTTTTCGTGAGGAAGTCG 59.999 52.381 3.59 0.00 36.33 4.18
2211 2263 3.334583 TCATCCCTTTTCGTGAGGAAG 57.665 47.619 3.59 0.00 36.33 3.46
2220 2272 1.758862 CCTGCCCATTCATCCCTTTTC 59.241 52.381 0.00 0.00 0.00 2.29
2226 2278 0.757935 ATGTGCCTGCCCATTCATCC 60.758 55.000 0.00 0.00 0.00 3.51
2229 2281 0.609151 CAAATGTGCCTGCCCATTCA 59.391 50.000 0.36 0.00 31.15 2.57
2265 2317 0.954452 CTGTCCTTGGTTGGTCAAGC 59.046 55.000 6.00 6.00 41.89 4.01
2268 2320 2.862541 CAATCTGTCCTTGGTTGGTCA 58.137 47.619 0.00 0.00 0.00 4.02
2299 2351 1.681538 TGTGAGAGATCCTCCGTAGC 58.318 55.000 8.25 0.00 41.25 3.58
2304 2356 3.736433 CGTGTTCATGTGAGAGATCCTCC 60.736 52.174 8.25 2.45 41.25 4.30
2326 2378 4.492494 AATCTGCCAAAATTTCCCCATC 57.508 40.909 0.00 0.00 0.00 3.51
2335 2387 8.814038 AACTCTGACTATAAATCTGCCAAAAT 57.186 30.769 0.00 0.00 0.00 1.82
2338 2390 6.818644 GTGAACTCTGACTATAAATCTGCCAA 59.181 38.462 0.00 0.00 0.00 4.52
2339 2391 6.155221 AGTGAACTCTGACTATAAATCTGCCA 59.845 38.462 0.00 0.00 0.00 4.92
2384 2467 6.286240 TCTGCTAAATTAAGTGAGCTCTGA 57.714 37.500 16.19 6.49 35.89 3.27
2385 2468 6.974932 TTCTGCTAAATTAAGTGAGCTCTG 57.025 37.500 16.19 4.45 35.89 3.35
2386 2469 7.334090 TGATTCTGCTAAATTAAGTGAGCTCT 58.666 34.615 16.19 0.00 35.89 4.09
2387 2470 7.545362 TGATTCTGCTAAATTAAGTGAGCTC 57.455 36.000 13.25 6.82 35.89 4.09
2388 2471 9.050601 GTATGATTCTGCTAAATTAAGTGAGCT 57.949 33.333 13.25 0.00 35.89 4.09
2389 2472 9.050601 AGTATGATTCTGCTAAATTAAGTGAGC 57.949 33.333 5.26 5.26 35.43 4.26
2397 2480 9.890629 TGTGAACTAGTATGATTCTGCTAAATT 57.109 29.630 0.00 0.00 0.00 1.82
2399 2482 9.890629 AATGTGAACTAGTATGATTCTGCTAAA 57.109 29.630 0.00 0.00 0.00 1.85
2400 2483 9.890629 AAATGTGAACTAGTATGATTCTGCTAA 57.109 29.630 0.00 0.00 0.00 3.09
2401 2484 9.534565 GAAATGTGAACTAGTATGATTCTGCTA 57.465 33.333 0.00 0.00 0.00 3.49
2402 2485 8.043113 TGAAATGTGAACTAGTATGATTCTGCT 58.957 33.333 0.00 0.00 0.00 4.24
2403 2486 8.119226 GTGAAATGTGAACTAGTATGATTCTGC 58.881 37.037 0.00 0.00 0.00 4.26
2404 2487 9.376075 AGTGAAATGTGAACTAGTATGATTCTG 57.624 33.333 0.00 0.00 0.00 3.02
2405 2488 9.950496 AAGTGAAATGTGAACTAGTATGATTCT 57.050 29.630 0.00 0.00 0.00 2.40
2413 2496 9.349713 TCCAAATTAAGTGAAATGTGAACTAGT 57.650 29.630 0.00 0.00 0.00 2.57
2416 2499 8.306761 GGATCCAAATTAAGTGAAATGTGAACT 58.693 33.333 6.95 0.00 0.00 3.01
2417 2500 8.306761 AGGATCCAAATTAAGTGAAATGTGAAC 58.693 33.333 15.82 0.00 0.00 3.18
2418 2501 8.421249 AGGATCCAAATTAAGTGAAATGTGAA 57.579 30.769 15.82 0.00 0.00 3.18
2484 2567 2.368439 TCTGCTGAAATGAATTCCCCG 58.632 47.619 2.27 0.00 37.22 5.73
2549 2632 7.369803 TCATTCATACTCTTGAGCTTCAAAC 57.630 36.000 0.00 0.00 35.73 2.93
2581 2666 7.759489 TGTGACTATAGTTCTGCCAAATTTT 57.241 32.000 6.88 0.00 0.00 1.82
2736 2821 2.604046 AATCCGAGAGAATTCCGTGG 57.396 50.000 0.65 0.00 0.00 4.94
2862 2947 2.159240 TGTGATGGCTCGTCTCACATAC 60.159 50.000 0.74 0.00 43.10 2.39
2882 2967 0.319297 GCTTGCCTGCAGAAAACCTG 60.319 55.000 17.39 0.00 45.67 4.00
2903 2988 2.125106 CTAACCGTCTGGCCTGCC 60.125 66.667 3.32 0.00 39.70 4.85
2916 3001 1.202076 GCAGACTCATTTGCGCCTAAC 60.202 52.381 4.18 0.00 0.00 2.34
3074 3159 3.671716 CAGCCCCCTATTCGGTTATAAC 58.328 50.000 7.09 7.09 0.00 1.89
3300 3391 6.316319 ACTACTGTAAAACAAACAAACACCG 58.684 36.000 0.00 0.00 0.00 4.94
3317 3408 7.727181 AGTCTCAGTGAACAATAAACTACTGT 58.273 34.615 0.00 0.00 37.42 3.55
3318 3409 7.867909 TGAGTCTCAGTGAACAATAAACTACTG 59.132 37.037 0.00 0.00 37.47 2.74
3319 3410 7.952671 TGAGTCTCAGTGAACAATAAACTACT 58.047 34.615 0.00 0.00 0.00 2.57
3320 3411 8.764524 ATGAGTCTCAGTGAACAATAAACTAC 57.235 34.615 8.82 0.00 0.00 2.73
3349 3440 9.836864 AAAAGAAGATAAATTTTATGCATCCCC 57.163 29.630 0.19 0.00 0.00 4.81
3487 3586 8.743085 ATCATGCTCACAGAAGTACAAATAAT 57.257 30.769 0.00 0.00 0.00 1.28
3528 3627 3.300388 CCCCTCTTCTGTGTCTGCTATA 58.700 50.000 0.00 0.00 0.00 1.31
3621 3723 3.519913 GGAGGCCCCTATTCAGTTATAGG 59.480 52.174 0.00 0.00 44.53 2.57
3622 3724 3.195825 CGGAGGCCCCTATTCAGTTATAG 59.804 52.174 0.00 0.00 0.00 1.31
3645 3747 2.370189 AGGGCTGTATCATGAAGGCTAC 59.630 50.000 16.39 8.02 36.76 3.58
3646 3748 2.369860 CAGGGCTGTATCATGAAGGCTA 59.630 50.000 16.39 0.00 36.76 3.93
3714 3816 4.057432 ACAAAATTCAAGCAAATGGTCCG 58.943 39.130 0.00 0.00 0.00 4.79
3755 3857 7.031975 GTCCCCCGTAATTTATCGTTATAGAG 58.968 42.308 0.00 0.00 0.00 2.43
3766 3868 5.182169 AGACAAATGTCCCCCGTAATTTA 57.818 39.130 9.84 0.00 45.85 1.40
3782 3884 5.663556 AGGTAACCATTTTCCCAAAGACAAA 59.336 36.000 0.00 0.00 37.17 2.83
3851 3953 2.429933 ATCATACATCCCTCCAGCCT 57.570 50.000 0.00 0.00 0.00 4.58
3853 3955 4.090761 TGAAATCATACATCCCTCCAGC 57.909 45.455 0.00 0.00 0.00 4.85
3906 4008 6.816140 ACCGTGGCCAATTAAAAATGAATAAG 59.184 34.615 7.24 0.00 0.00 1.73
3907 4009 6.702329 ACCGTGGCCAATTAAAAATGAATAA 58.298 32.000 7.24 0.00 0.00 1.40
3909 4011 5.159273 ACCGTGGCCAATTAAAAATGAAT 57.841 34.783 7.24 0.00 0.00 2.57
3928 4030 2.158559 TGATCCACATGAACCAAACCG 58.841 47.619 0.00 0.00 0.00 4.44
3941 4043 1.963515 GCCCAATGGGTTATGATCCAC 59.036 52.381 21.02 0.00 46.51 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.