Multiple sequence alignment - TraesCS3A01G083100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G083100 chr3A 100.000 2318 0 0 1 2318 53556344 53558661 0.000000e+00 4281.0
1 TraesCS3A01G083100 chr3A 97.688 173 4 0 81 253 89152576 89152748 4.840000e-77 298.0
2 TraesCS3A01G083100 chr3A 96.111 180 6 1 77 256 515831120 515830942 2.250000e-75 292.0
3 TraesCS3A01G083100 chr3A 93.750 64 4 0 2255 2318 107613795 107613858 1.900000e-16 97.1
4 TraesCS3A01G083100 chr3A 93.750 64 3 1 2255 2318 716402317 716402379 6.820000e-16 95.3
5 TraesCS3A01G083100 chr3D 92.962 952 62 3 1367 2318 42097278 42096332 0.000000e+00 1382.0
6 TraesCS3A01G083100 chr3D 93.000 700 34 4 290 974 42302511 42301812 0.000000e+00 1007.0
7 TraesCS3A01G083100 chr3D 82.687 335 38 14 738 1057 113565421 113565750 1.750000e-71 279.0
8 TraesCS3A01G083100 chr3D 95.906 171 7 0 1180 1350 42097512 42097342 6.310000e-71 278.0
9 TraesCS3A01G083100 chr3D 96.226 106 4 0 1080 1185 42296181 42296076 8.510000e-40 174.0
10 TraesCS3A01G083100 chr3D 97.778 90 2 0 2 91 42302666 42302577 3.080000e-34 156.0
11 TraesCS3A01G083100 chr3D 98.182 55 1 0 252 306 42302578 42302524 1.900000e-16 97.1
12 TraesCS3A01G083100 chr3D 74.405 168 41 2 1160 1326 513385052 513384886 1.150000e-08 71.3
13 TraesCS3A01G083100 chr3B 95.597 318 12 2 227 543 65550215 65550531 2.050000e-140 508.0
14 TraesCS3A01G083100 chr3B 90.435 115 11 0 2 116 65550037 65550151 3.990000e-33 152.0
15 TraesCS3A01G083100 chr3B 93.750 64 4 0 2255 2318 729383176 729383239 1.900000e-16 97.1
16 TraesCS3A01G083100 chr6B 86.082 388 36 10 685 1057 130326764 130327148 3.590000e-108 401.0
17 TraesCS3A01G083100 chr6B 81.365 381 48 16 690 1057 278279221 278279591 2.910000e-74 289.0
18 TraesCS3A01G083100 chr7D 82.338 385 53 9 685 1056 12451959 12451577 1.030000e-83 320.0
19 TraesCS3A01G083100 chr7D 81.201 383 51 13 693 1060 565467814 565467438 2.910000e-74 289.0
20 TraesCS3A01G083100 chr7D 93.750 64 3 1 2253 2315 309508513 309508450 6.820000e-16 95.3
21 TraesCS3A01G083100 chr7D 93.548 62 4 0 2257 2318 157101278 157101217 2.450000e-15 93.5
22 TraesCS3A01G083100 chr7D 76.087 138 31 2 1136 1272 332252083 332252219 1.150000e-08 71.3
23 TraesCS3A01G083100 chr4B 82.292 384 51 11 689 1060 588909151 588908773 1.340000e-82 316.0
24 TraesCS3A01G083100 chr4B 97.688 173 3 1 86 258 671749680 671749851 1.740000e-76 296.0
25 TraesCS3A01G083100 chr5B 98.256 172 3 0 85 256 396856585 396856756 3.740000e-78 302.0
26 TraesCS3A01G083100 chr2A 81.510 384 51 12 690 1060 758305460 758305084 4.840000e-77 298.0
27 TraesCS3A01G083100 chr2A 97.159 176 3 2 90 264 603083448 603083622 1.740000e-76 296.0
28 TraesCS3A01G083100 chr1A 97.175 177 3 2 82 257 557104493 557104318 4.840000e-77 298.0
29 TraesCS3A01G083100 chr1A 97.143 175 5 0 86 260 33222023 33222197 1.740000e-76 296.0
30 TraesCS3A01G083100 chr5A 96.133 181 6 1 77 256 371028021 371027841 6.260000e-76 294.0
31 TraesCS3A01G083100 chr5A 82.468 308 41 9 683 981 667116267 667116570 8.220000e-65 257.0
32 TraesCS3A01G083100 chr4A 97.126 174 3 2 90 262 515656268 515656096 2.250000e-75 292.0
33 TraesCS3A01G083100 chr4A 78.351 97 15 5 1702 1795 505493510 505493603 8.950000e-05 58.4
34 TraesCS3A01G083100 chr7B 95.161 62 3 0 2257 2318 615378207 615378146 5.270000e-17 99.0
35 TraesCS3A01G083100 chr2D 95.238 63 1 1 2256 2318 571926322 571926382 5.270000e-17 99.0
36 TraesCS3A01G083100 chr5D 93.651 63 4 0 2256 2318 513352670 513352608 6.820000e-16 95.3
37 TraesCS3A01G083100 chr6D 76.106 113 27 0 1160 1272 339401537 339401649 2.490000e-05 60.2
38 TraesCS3A01G083100 chr6D 90.909 44 3 1 1238 1281 6341896 6341938 8.950000e-05 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G083100 chr3A 53556344 53558661 2317 False 4281.000000 4281 100.000 1 2318 1 chr3A.!!$F1 2317
1 TraesCS3A01G083100 chr3D 42096332 42097512 1180 True 830.000000 1382 94.434 1180 2318 2 chr3D.!!$R3 1138
2 TraesCS3A01G083100 chr3D 42301812 42302666 854 True 420.033333 1007 96.320 2 974 3 chr3D.!!$R4 972

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
680 724 1.199624 GGTTGTGCTTTCACGCAAAG 58.8 50.0 3.56 3.56 46.01 2.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1692 1784 0.035739 GGCCGACACCTTTCTACCAA 59.964 55.0 0.0 0.0 0.0 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 3.073798 TGGGTTTGCTCATGGTCTTCTAA 59.926 43.478 0.00 0.00 0.00 2.10
89 90 4.202631 TGGGAGTGGCAAAAGTAGGTAAAT 60.203 41.667 0.00 0.00 0.00 1.40
90 91 5.014333 TGGGAGTGGCAAAAGTAGGTAAATA 59.986 40.000 0.00 0.00 0.00 1.40
91 92 5.356190 GGGAGTGGCAAAAGTAGGTAAATAC 59.644 44.000 0.00 0.00 0.00 1.89
92 93 6.178324 GGAGTGGCAAAAGTAGGTAAATACT 58.822 40.000 0.00 0.00 37.61 2.12
93 94 6.315642 GGAGTGGCAAAAGTAGGTAAATACTC 59.684 42.308 0.00 0.00 34.90 2.59
94 95 6.178324 AGTGGCAAAAGTAGGTAAATACTCC 58.822 40.000 0.00 0.00 34.90 3.85
95 96 5.356190 GTGGCAAAAGTAGGTAAATACTCCC 59.644 44.000 0.00 0.00 34.90 4.30
96 97 5.252164 TGGCAAAAGTAGGTAAATACTCCCT 59.748 40.000 0.00 0.00 34.90 4.20
97 98 5.821470 GGCAAAAGTAGGTAAATACTCCCTC 59.179 44.000 0.00 0.00 34.90 4.30
98 99 5.821470 GCAAAAGTAGGTAAATACTCCCTCC 59.179 44.000 0.00 0.00 34.90 4.30
99 100 5.866159 AAAGTAGGTAAATACTCCCTCCG 57.134 43.478 0.00 0.00 34.90 4.63
100 101 4.533001 AGTAGGTAAATACTCCCTCCGT 57.467 45.455 0.00 0.00 29.89 4.69
101 102 4.876580 AGTAGGTAAATACTCCCTCCGTT 58.123 43.478 0.00 0.00 29.89 4.44
102 103 4.892345 AGTAGGTAAATACTCCCTCCGTTC 59.108 45.833 0.00 0.00 29.89 3.95
103 104 3.036819 AGGTAAATACTCCCTCCGTTCC 58.963 50.000 0.00 0.00 0.00 3.62
104 105 3.036819 GGTAAATACTCCCTCCGTTCCT 58.963 50.000 0.00 0.00 0.00 3.36
105 106 4.078980 AGGTAAATACTCCCTCCGTTCCTA 60.079 45.833 0.00 0.00 0.00 2.94
106 107 4.651045 GGTAAATACTCCCTCCGTTCCTAA 59.349 45.833 0.00 0.00 0.00 2.69
107 108 5.129320 GGTAAATACTCCCTCCGTTCCTAAA 59.871 44.000 0.00 0.00 0.00 1.85
108 109 5.970501 AAATACTCCCTCCGTTCCTAAAT 57.029 39.130 0.00 0.00 0.00 1.40
109 110 7.015584 GGTAAATACTCCCTCCGTTCCTAAATA 59.984 40.741 0.00 0.00 0.00 1.40
110 111 6.416631 AATACTCCCTCCGTTCCTAAATAC 57.583 41.667 0.00 0.00 0.00 1.89
111 112 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
112 113 4.359996 ACTCCCTCCGTTCCTAAATACTT 58.640 43.478 0.00 0.00 0.00 2.24
113 114 4.161754 ACTCCCTCCGTTCCTAAATACTTG 59.838 45.833 0.00 0.00 0.00 3.16
114 115 4.098894 TCCCTCCGTTCCTAAATACTTGT 58.901 43.478 0.00 0.00 0.00 3.16
115 116 4.161001 TCCCTCCGTTCCTAAATACTTGTC 59.839 45.833 0.00 0.00 0.00 3.18
116 117 4.161754 CCCTCCGTTCCTAAATACTTGTCT 59.838 45.833 0.00 0.00 0.00 3.41
117 118 5.338137 CCCTCCGTTCCTAAATACTTGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
118 119 6.171213 CCTCCGTTCCTAAATACTTGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
119 120 6.313164 CCTCCGTTCCTAAATACTTGTCTTTC 59.687 42.308 0.00 0.00 0.00 2.62
120 121 7.001099 TCCGTTCCTAAATACTTGTCTTTCT 57.999 36.000 0.00 0.00 0.00 2.52
121 122 8.125978 TCCGTTCCTAAATACTTGTCTTTCTA 57.874 34.615 0.00 0.00 0.00 2.10
122 123 8.248945 TCCGTTCCTAAATACTTGTCTTTCTAG 58.751 37.037 0.00 0.00 0.00 2.43
123 124 7.491696 CCGTTCCTAAATACTTGTCTTTCTAGG 59.508 40.741 0.00 0.00 0.00 3.02
124 125 7.010275 CGTTCCTAAATACTTGTCTTTCTAGGC 59.990 40.741 0.00 0.00 0.00 3.93
125 126 7.490657 TCCTAAATACTTGTCTTTCTAGGCA 57.509 36.000 0.00 0.00 33.22 4.75
126 127 8.090788 TCCTAAATACTTGTCTTTCTAGGCAT 57.909 34.615 0.00 0.00 35.56 4.40
127 128 8.548877 TCCTAAATACTTGTCTTTCTAGGCATT 58.451 33.333 0.00 0.00 35.56 3.56
128 129 9.178758 CCTAAATACTTGTCTTTCTAGGCATTT 57.821 33.333 0.00 0.00 35.56 2.32
130 131 8.635765 AAATACTTGTCTTTCTAGGCATTTCA 57.364 30.769 0.00 0.00 35.56 2.69
131 132 8.635765 AATACTTGTCTTTCTAGGCATTTCAA 57.364 30.769 0.00 0.00 35.56 2.69
132 133 6.319141 ACTTGTCTTTCTAGGCATTTCAAC 57.681 37.500 0.00 0.00 35.56 3.18
133 134 5.827797 ACTTGTCTTTCTAGGCATTTCAACA 59.172 36.000 0.00 0.00 35.56 3.33
134 135 6.321181 ACTTGTCTTTCTAGGCATTTCAACAA 59.679 34.615 0.00 0.00 35.56 2.83
135 136 6.317789 TGTCTTTCTAGGCATTTCAACAAG 57.682 37.500 0.00 0.00 29.10 3.16
136 137 5.827797 TGTCTTTCTAGGCATTTCAACAAGT 59.172 36.000 0.00 0.00 29.10 3.16
137 138 6.145535 GTCTTTCTAGGCATTTCAACAAGTG 58.854 40.000 0.00 0.00 0.00 3.16
138 139 6.017109 GTCTTTCTAGGCATTTCAACAAGTGA 60.017 38.462 0.00 0.00 0.00 3.41
139 140 5.689383 TTCTAGGCATTTCAACAAGTGAC 57.311 39.130 0.00 0.00 35.39 3.67
140 141 4.973168 TCTAGGCATTTCAACAAGTGACT 58.027 39.130 0.00 0.00 40.60 3.41
141 142 6.109156 TCTAGGCATTTCAACAAGTGACTA 57.891 37.500 0.00 0.00 38.51 2.59
142 143 5.932303 TCTAGGCATTTCAACAAGTGACTAC 59.068 40.000 0.00 0.00 38.51 2.73
143 144 4.460263 AGGCATTTCAACAAGTGACTACA 58.540 39.130 0.00 0.00 35.84 2.74
144 145 5.072741 AGGCATTTCAACAAGTGACTACAT 58.927 37.500 0.00 0.00 35.84 2.29
145 146 6.237901 AGGCATTTCAACAAGTGACTACATA 58.762 36.000 0.00 0.00 35.84 2.29
146 147 6.149474 AGGCATTTCAACAAGTGACTACATAC 59.851 38.462 0.00 0.00 35.84 2.39
147 148 6.015504 GCATTTCAACAAGTGACTACATACG 58.984 40.000 0.00 0.00 35.39 3.06
148 149 6.534059 CATTTCAACAAGTGACTACATACGG 58.466 40.000 0.00 0.00 35.39 4.02
149 150 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
150 151 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
151 152 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
152 153 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
153 154 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
154 155 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
155 156 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
156 157 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
157 158 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
158 159 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
159 160 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
160 161 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
161 162 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
162 163 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
163 164 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
164 165 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
165 166 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
166 167 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
167 168 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
168 169 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
169 170 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
170 171 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
213 214 7.342769 ACATCCGTATGTACTAGTCATTTGA 57.657 36.000 0.00 2.08 44.66 2.69
214 215 7.778083 ACATCCGTATGTACTAGTCATTTGAA 58.222 34.615 0.00 0.00 44.66 2.69
215 216 8.255206 ACATCCGTATGTACTAGTCATTTGAAA 58.745 33.333 0.00 0.00 44.66 2.69
216 217 9.261180 CATCCGTATGTACTAGTCATTTGAAAT 57.739 33.333 0.00 0.00 0.00 2.17
217 218 8.642908 TCCGTATGTACTAGTCATTTGAAATG 57.357 34.615 11.54 11.54 0.00 2.32
218 219 8.255206 TCCGTATGTACTAGTCATTTGAAATGT 58.745 33.333 16.62 2.38 0.00 2.71
219 220 8.540492 CCGTATGTACTAGTCATTTGAAATGTC 58.460 37.037 16.62 11.74 0.00 3.06
220 221 9.302345 CGTATGTACTAGTCATTTGAAATGTCT 57.698 33.333 18.62 18.62 0.00 3.41
244 245 8.248945 TCTAGAAAGACAAGTATTTAGGAACGG 58.751 37.037 0.00 0.00 0.00 4.44
245 246 7.001099 AGAAAGACAAGTATTTAGGAACGGA 57.999 36.000 0.00 0.00 0.00 4.69
246 247 7.097834 AGAAAGACAAGTATTTAGGAACGGAG 58.902 38.462 0.00 0.00 0.00 4.63
247 248 5.340439 AGACAAGTATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
248 249 4.161754 AGACAAGTATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
249 250 4.098894 ACAAGTATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
250 251 4.161754 ACAAGTATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
265 266 3.132467 GGAGGGAGTAGTACGCAATTTCT 59.868 47.826 6.37 0.00 0.00 2.52
313 343 5.502079 AGAATCTCGAGAAGTTGAGGTAGA 58.498 41.667 20.91 0.00 35.12 2.59
314 344 6.126409 AGAATCTCGAGAAGTTGAGGTAGAT 58.874 40.000 20.91 0.00 35.12 1.98
357 388 6.091713 CCACGTGGAAGTTATAGGTTTTACAG 59.908 42.308 31.31 0.00 37.39 2.74
384 415 5.179929 GCTGATGTCAAAATTTTCCCTTTGG 59.820 40.000 0.00 0.00 34.07 3.28
470 501 6.992715 ACTCATGCTTCAAAACTGTACTAACT 59.007 34.615 0.00 0.00 0.00 2.24
512 543 1.969923 CTTGTGCTCCCCCATTTTGAA 59.030 47.619 0.00 0.00 0.00 2.69
540 571 4.151258 CTGTGCTACCATGAAAACACAG 57.849 45.455 18.13 18.13 46.10 3.66
541 572 3.550820 TGTGCTACCATGAAAACACAGT 58.449 40.909 0.00 0.00 33.41 3.55
563 595 7.152645 CAGTGTACTAAGTTGTGTTCCTACAT 58.847 38.462 0.00 0.00 36.50 2.29
618 650 1.518102 GCATGTGTTTCGCAAAGTGTG 59.482 47.619 0.00 0.00 0.00 3.82
635 667 2.192861 TGCCAACTTTGTGCTCCCG 61.193 57.895 0.00 0.00 0.00 5.14
645 689 2.125552 TGCTCCCGTGATGCTTCG 60.126 61.111 0.00 0.00 0.00 3.79
675 719 4.588084 CACGGTTGTGCTTTCACG 57.412 55.556 0.00 0.00 46.01 4.35
677 721 2.109739 ACGGTTGTGCTTTCACGCA 61.110 52.632 0.00 0.00 46.01 5.24
680 724 1.199624 GGTTGTGCTTTCACGCAAAG 58.800 50.000 3.56 3.56 46.01 2.77
733 777 4.394712 GCACTCGGGTCCTGGTGG 62.395 72.222 16.58 3.94 0.00 4.61
749 793 4.261825 CCTGGTGGCGTCTTTTTATTTTGA 60.262 41.667 0.00 0.00 0.00 2.69
964 1009 9.893305 CGACTGACAGGAAAAATTACTTAAAAT 57.107 29.630 7.51 0.00 0.00 1.82
986 1031 9.598517 AAAATTTATCTCTGCAACTTGTTGAAA 57.401 25.926 16.57 7.08 0.00 2.69
987 1032 8.579682 AATTTATCTCTGCAACTTGTTGAAAC 57.420 30.769 16.57 0.95 0.00 2.78
988 1033 6.942532 TTATCTCTGCAACTTGTTGAAACT 57.057 33.333 16.57 0.00 0.00 2.66
989 1034 5.841957 ATCTCTGCAACTTGTTGAAACTT 57.158 34.783 16.57 0.00 0.00 2.66
990 1035 4.985413 TCTCTGCAACTTGTTGAAACTTG 58.015 39.130 16.57 0.00 0.00 3.16
991 1036 4.107622 CTCTGCAACTTGTTGAAACTTGG 58.892 43.478 16.57 0.00 0.00 3.61
992 1037 3.761218 TCTGCAACTTGTTGAAACTTGGA 59.239 39.130 16.57 0.00 0.00 3.53
993 1038 4.402155 TCTGCAACTTGTTGAAACTTGGAT 59.598 37.500 16.57 0.00 0.00 3.41
994 1039 5.083533 TGCAACTTGTTGAAACTTGGATT 57.916 34.783 16.57 0.00 0.00 3.01
995 1040 5.486526 TGCAACTTGTTGAAACTTGGATTT 58.513 33.333 16.57 0.00 0.00 2.17
996 1041 5.936956 TGCAACTTGTTGAAACTTGGATTTT 59.063 32.000 16.57 0.00 0.00 1.82
997 1042 6.429385 TGCAACTTGTTGAAACTTGGATTTTT 59.571 30.769 16.57 0.00 0.00 1.94
998 1043 7.604164 TGCAACTTGTTGAAACTTGGATTTTTA 59.396 29.630 16.57 0.00 0.00 1.52
999 1044 8.116136 GCAACTTGTTGAAACTTGGATTTTTAG 58.884 33.333 16.57 0.00 0.00 1.85
1000 1045 9.364989 CAACTTGTTGAAACTTGGATTTTTAGA 57.635 29.630 7.66 0.00 0.00 2.10
1002 1047 9.533253 ACTTGTTGAAACTTGGATTTTTAGATG 57.467 29.630 0.00 0.00 0.00 2.90
1003 1048 7.945033 TGTTGAAACTTGGATTTTTAGATGC 57.055 32.000 0.00 0.00 0.00 3.91
1004 1049 7.495901 TGTTGAAACTTGGATTTTTAGATGCA 58.504 30.769 0.00 0.00 0.00 3.96
1005 1050 7.984050 TGTTGAAACTTGGATTTTTAGATGCAA 59.016 29.630 0.00 0.00 36.21 4.08
1006 1051 8.825745 GTTGAAACTTGGATTTTTAGATGCAAA 58.174 29.630 0.00 0.00 37.00 3.68
1007 1052 8.954950 TGAAACTTGGATTTTTAGATGCAAAA 57.045 26.923 0.00 0.00 37.00 2.44
1008 1053 9.388506 TGAAACTTGGATTTTTAGATGCAAAAA 57.611 25.926 0.00 0.00 40.58 1.94
1058 1103 9.952030 TTTAAGTTTTTCAAGGGATTTTCTTGT 57.048 25.926 0.00 0.00 41.52 3.16
1059 1104 9.952030 TTAAGTTTTTCAAGGGATTTTCTTGTT 57.048 25.926 0.00 0.00 41.52 2.83
1060 1105 7.848223 AGTTTTTCAAGGGATTTTCTTGTTG 57.152 32.000 0.00 0.00 41.52 3.33
1061 1106 7.619965 AGTTTTTCAAGGGATTTTCTTGTTGA 58.380 30.769 0.00 0.00 41.52 3.18
1062 1107 8.100164 AGTTTTTCAAGGGATTTTCTTGTTGAA 58.900 29.630 0.00 0.00 41.52 2.69
1063 1108 8.726068 GTTTTTCAAGGGATTTTCTTGTTGAAA 58.274 29.630 4.39 4.39 40.39 2.69
1064 1109 9.460019 TTTTTCAAGGGATTTTCTTGTTGAAAT 57.540 25.926 8.42 0.00 43.34 2.17
1065 1110 8.661352 TTTCAAGGGATTTTCTTGTTGAAATC 57.339 30.769 4.39 0.00 43.34 2.17
1066 1111 7.358770 TCAAGGGATTTTCTTGTTGAAATCA 57.641 32.000 10.02 0.00 43.34 2.57
1067 1112 7.790027 TCAAGGGATTTTCTTGTTGAAATCAA 58.210 30.769 10.02 0.00 43.34 2.57
1068 1113 8.431222 TCAAGGGATTTTCTTGTTGAAATCAAT 58.569 29.630 10.02 0.00 43.34 2.57
1069 1114 9.059260 CAAGGGATTTTCTTGTTGAAATCAATT 57.941 29.630 10.02 2.99 43.34 2.32
1084 1129 9.585099 TTGAAATCAATTATTCCCATTTTCTCG 57.415 29.630 0.00 0.00 0.00 4.04
1085 1130 8.748412 TGAAATCAATTATTCCCATTTTCTCGT 58.252 29.630 0.00 0.00 0.00 4.18
1086 1131 9.586435 GAAATCAATTATTCCCATTTTCTCGTT 57.414 29.630 0.00 0.00 0.00 3.85
1087 1132 9.586435 AAATCAATTATTCCCATTTTCTCGTTC 57.414 29.630 0.00 0.00 0.00 3.95
1088 1133 7.938140 TCAATTATTCCCATTTTCTCGTTCT 57.062 32.000 0.00 0.00 0.00 3.01
1089 1134 8.348285 TCAATTATTCCCATTTTCTCGTTCTT 57.652 30.769 0.00 0.00 0.00 2.52
1090 1135 8.802267 TCAATTATTCCCATTTTCTCGTTCTTT 58.198 29.630 0.00 0.00 0.00 2.52
1091 1136 9.076596 CAATTATTCCCATTTTCTCGTTCTTTC 57.923 33.333 0.00 0.00 0.00 2.62
1092 1137 4.742438 TTCCCATTTTCTCGTTCTTTCG 57.258 40.909 0.00 0.00 0.00 3.46
1093 1138 3.071479 TCCCATTTTCTCGTTCTTTCGG 58.929 45.455 0.00 0.00 0.00 4.30
1094 1139 2.812011 CCCATTTTCTCGTTCTTTCGGT 59.188 45.455 0.00 0.00 0.00 4.69
1095 1140 3.120304 CCCATTTTCTCGTTCTTTCGGTC 60.120 47.826 0.00 0.00 0.00 4.79
1096 1141 3.120304 CCATTTTCTCGTTCTTTCGGTCC 60.120 47.826 0.00 0.00 0.00 4.46
1097 1142 3.464111 TTTTCTCGTTCTTTCGGTCCT 57.536 42.857 0.00 0.00 0.00 3.85
1098 1143 2.719426 TTCTCGTTCTTTCGGTCCTC 57.281 50.000 0.00 0.00 0.00 3.71
1099 1144 1.906990 TCTCGTTCTTTCGGTCCTCT 58.093 50.000 0.00 0.00 0.00 3.69
1100 1145 1.540267 TCTCGTTCTTTCGGTCCTCTG 59.460 52.381 0.00 0.00 0.00 3.35
1101 1146 0.038526 TCGTTCTTTCGGTCCTCTGC 60.039 55.000 0.00 0.00 0.00 4.26
1102 1147 0.038159 CGTTCTTTCGGTCCTCTGCT 60.038 55.000 0.00 0.00 0.00 4.24
1103 1148 1.715993 GTTCTTTCGGTCCTCTGCTC 58.284 55.000 0.00 0.00 0.00 4.26
1104 1149 0.243907 TTCTTTCGGTCCTCTGCTCG 59.756 55.000 0.00 0.00 0.00 5.03
1105 1150 1.153745 CTTTCGGTCCTCTGCTCGG 60.154 63.158 0.00 0.00 0.00 4.63
1106 1151 1.878656 CTTTCGGTCCTCTGCTCGGT 61.879 60.000 0.00 0.00 0.00 4.69
1107 1152 1.469335 TTTCGGTCCTCTGCTCGGTT 61.469 55.000 0.00 0.00 0.00 4.44
1108 1153 1.874345 TTCGGTCCTCTGCTCGGTTC 61.874 60.000 0.00 0.00 0.00 3.62
1109 1154 2.579738 GGTCCTCTGCTCGGTTCC 59.420 66.667 0.00 0.00 0.00 3.62
1110 1155 1.985116 GGTCCTCTGCTCGGTTCCT 60.985 63.158 0.00 0.00 0.00 3.36
1111 1156 0.683504 GGTCCTCTGCTCGGTTCCTA 60.684 60.000 0.00 0.00 0.00 2.94
1112 1157 1.404843 GTCCTCTGCTCGGTTCCTAT 58.595 55.000 0.00 0.00 0.00 2.57
1113 1158 2.584236 GTCCTCTGCTCGGTTCCTATA 58.416 52.381 0.00 0.00 0.00 1.31
1114 1159 2.293955 GTCCTCTGCTCGGTTCCTATAC 59.706 54.545 0.00 0.00 0.00 1.47
1115 1160 2.092049 TCCTCTGCTCGGTTCCTATACA 60.092 50.000 0.00 0.00 0.00 2.29
1116 1161 2.894126 CCTCTGCTCGGTTCCTATACAT 59.106 50.000 0.00 0.00 0.00 2.29
1117 1162 3.305676 CCTCTGCTCGGTTCCTATACATG 60.306 52.174 0.00 0.00 0.00 3.21
1118 1163 2.035961 TCTGCTCGGTTCCTATACATGC 59.964 50.000 0.00 0.00 0.00 4.06
1119 1164 1.760029 TGCTCGGTTCCTATACATGCA 59.240 47.619 0.00 0.00 0.00 3.96
1120 1165 2.169561 TGCTCGGTTCCTATACATGCAA 59.830 45.455 0.00 0.00 0.00 4.08
1121 1166 3.181455 TGCTCGGTTCCTATACATGCAAT 60.181 43.478 0.00 0.00 0.00 3.56
1133 1178 1.556564 CATGCAATGCTAGTGCTTGC 58.443 50.000 6.82 15.01 45.02 4.01
1134 1179 1.134367 CATGCAATGCTAGTGCTTGCT 59.866 47.619 19.61 8.65 45.03 3.91
1135 1180 0.806868 TGCAATGCTAGTGCTTGCTC 59.193 50.000 19.61 0.00 45.03 4.26
1136 1181 1.093159 GCAATGCTAGTGCTTGCTCT 58.907 50.000 14.75 2.77 43.34 4.09
1137 1182 1.471684 GCAATGCTAGTGCTTGCTCTT 59.528 47.619 14.75 0.00 43.34 2.85
1138 1183 2.477525 GCAATGCTAGTGCTTGCTCTTC 60.478 50.000 14.75 0.00 43.34 2.87
1139 1184 2.035530 ATGCTAGTGCTTGCTCTTCC 57.964 50.000 2.51 0.00 40.48 3.46
1140 1185 0.390340 TGCTAGTGCTTGCTCTTCCG 60.390 55.000 2.51 0.00 40.48 4.30
1141 1186 0.108615 GCTAGTGCTTGCTCTTCCGA 60.109 55.000 2.51 0.00 36.03 4.55
1142 1187 1.472376 GCTAGTGCTTGCTCTTCCGAT 60.472 52.381 2.51 0.00 36.03 4.18
1143 1188 2.200067 CTAGTGCTTGCTCTTCCGATG 58.800 52.381 2.51 0.00 0.00 3.84
1144 1189 0.610174 AGTGCTTGCTCTTCCGATGA 59.390 50.000 0.00 0.00 0.00 2.92
1145 1190 1.002430 AGTGCTTGCTCTTCCGATGAA 59.998 47.619 0.00 0.00 0.00 2.57
1156 1201 2.916702 TCCGATGAAGACCATCCATG 57.083 50.000 0.00 0.00 46.98 3.66
1157 1202 1.202687 TCCGATGAAGACCATCCATGC 60.203 52.381 0.00 0.00 46.98 4.06
1158 1203 1.233019 CGATGAAGACCATCCATGCC 58.767 55.000 0.00 0.00 46.98 4.40
1159 1204 1.475571 CGATGAAGACCATCCATGCCA 60.476 52.381 0.00 0.00 46.98 4.92
1160 1205 2.812983 CGATGAAGACCATCCATGCCAT 60.813 50.000 0.00 0.00 46.98 4.40
1161 1206 2.061509 TGAAGACCATCCATGCCATG 57.938 50.000 0.00 0.00 0.00 3.66
1162 1207 1.565288 TGAAGACCATCCATGCCATGA 59.435 47.619 6.18 0.00 0.00 3.07
1163 1208 2.025131 TGAAGACCATCCATGCCATGAA 60.025 45.455 6.18 0.00 0.00 2.57
1164 1209 2.062971 AGACCATCCATGCCATGAAC 57.937 50.000 6.18 0.00 0.00 3.18
1165 1210 1.285667 AGACCATCCATGCCATGAACA 59.714 47.619 6.18 0.00 0.00 3.18
1166 1211 2.101783 GACCATCCATGCCATGAACAA 58.898 47.619 6.18 0.00 0.00 2.83
1167 1212 2.100252 GACCATCCATGCCATGAACAAG 59.900 50.000 6.18 0.00 0.00 3.16
1168 1213 2.291735 ACCATCCATGCCATGAACAAGA 60.292 45.455 6.18 0.00 0.00 3.02
1169 1214 2.963101 CCATCCATGCCATGAACAAGAT 59.037 45.455 6.18 0.00 0.00 2.40
1170 1215 3.005472 CCATCCATGCCATGAACAAGATC 59.995 47.826 6.18 0.00 0.00 2.75
1171 1216 3.369242 TCCATGCCATGAACAAGATCA 57.631 42.857 6.18 0.00 0.00 2.92
1172 1217 3.905968 TCCATGCCATGAACAAGATCAT 58.094 40.909 6.18 0.00 40.64 2.45
1173 1218 3.887110 TCCATGCCATGAACAAGATCATC 59.113 43.478 6.18 0.00 37.96 2.92
1174 1219 3.005472 CCATGCCATGAACAAGATCATCC 59.995 47.826 6.18 0.00 37.96 3.51
1175 1220 2.291365 TGCCATGAACAAGATCATCCG 58.709 47.619 0.00 0.00 37.96 4.18
1176 1221 2.093021 TGCCATGAACAAGATCATCCGA 60.093 45.455 0.00 0.00 37.96 4.55
1177 1222 2.547211 GCCATGAACAAGATCATCCGAG 59.453 50.000 0.00 0.00 37.96 4.63
1178 1223 3.136763 CCATGAACAAGATCATCCGAGG 58.863 50.000 0.00 0.00 37.96 4.63
1218 1263 2.368548 AGCCCAAGAAAATGGTGGAAAC 59.631 45.455 0.00 0.00 38.91 2.78
1247 1292 0.737219 GCATGGGAGACAATCTGCAC 59.263 55.000 0.00 0.00 36.47 4.57
1254 1299 0.537143 AGACAATCTGCACGCCCAAA 60.537 50.000 0.00 0.00 0.00 3.28
1306 1351 1.066716 CATGGTTGAATGTGGCCTTGG 60.067 52.381 3.32 0.00 0.00 3.61
1350 1395 0.322816 GAGTGGATCAGCAAAGGCCA 60.323 55.000 5.01 0.00 42.56 5.36
1352 1397 0.743097 GTGGATCAGCAAAGGCCATC 59.257 55.000 5.01 0.00 42.56 3.51
1354 1399 1.358046 GATCAGCAAAGGCCATCGC 59.642 57.895 5.01 3.37 42.56 4.58
1355 1400 2.384391 GATCAGCAAAGGCCATCGCG 62.384 60.000 5.01 0.00 42.56 5.87
1388 1480 5.021458 TGATAATAGTAGGGGACGGGAATC 58.979 45.833 0.00 0.00 0.00 2.52
1389 1481 3.632420 AATAGTAGGGGACGGGAATCT 57.368 47.619 0.00 0.00 0.00 2.40
1390 1482 4.754411 AATAGTAGGGGACGGGAATCTA 57.246 45.455 0.00 0.00 0.00 1.98
1401 1493 4.213513 GACGGGAATCTAACCCTCTTCTA 58.786 47.826 0.00 0.00 44.72 2.10
1449 1541 0.377203 CTTAAGGAAATCGCGCCACC 59.623 55.000 0.00 1.96 0.00 4.61
1473 1565 3.312973 GTCTATGAGGTAGTCACTCCACG 59.687 52.174 0.00 0.00 38.28 4.94
1486 1578 1.298157 CTCCACGCGCAAGGAAATCA 61.298 55.000 17.33 0.00 32.57 2.57
1514 1606 3.725490 CTCAATGATGCCATCTCTTCGA 58.275 45.455 6.21 0.00 31.40 3.71
1521 1613 2.723273 TGCCATCTCTTCGAGTGTCTA 58.277 47.619 0.00 0.00 0.00 2.59
1635 1727 5.254115 AGGCATGGATGACATCATATCTTG 58.746 41.667 17.08 8.77 38.64 3.02
1643 1735 5.955961 TGACATCATATCTTGGTCTTGGA 57.044 39.130 0.00 0.00 0.00 3.53
1651 1743 0.955919 CTTGGTCTTGGAAGGGCGAC 60.956 60.000 0.00 0.00 0.00 5.19
1653 1745 2.654877 GTCTTGGAAGGGCGACGA 59.345 61.111 0.00 0.00 0.00 4.20
1661 1753 0.942252 GAAGGGCGACGACAAGTTTT 59.058 50.000 1.63 0.00 0.00 2.43
1662 1754 1.332686 GAAGGGCGACGACAAGTTTTT 59.667 47.619 1.63 0.00 0.00 1.94
1700 1792 3.128349 GCTGTGAAGTTCGTTGGTAGAA 58.872 45.455 0.00 0.00 0.00 2.10
1744 1836 1.414919 ACGTGGAAGTCTAAAGCACCA 59.585 47.619 0.00 0.00 0.00 4.17
1745 1837 2.038557 ACGTGGAAGTCTAAAGCACCAT 59.961 45.455 0.00 0.00 0.00 3.55
1795 1887 3.213506 CATGAAGAACAGGTGTTGGACA 58.786 45.455 0.00 0.00 38.56 4.02
1797 1889 2.238646 TGAAGAACAGGTGTTGGACAGT 59.761 45.455 0.00 0.00 38.56 3.55
1798 1890 2.332063 AGAACAGGTGTTGGACAGTG 57.668 50.000 0.00 0.00 38.56 3.66
1867 1959 0.601311 GCAACGAGCAAGTGGAGACT 60.601 55.000 0.00 0.00 44.79 3.24
1874 1966 1.490490 AGCAAGTGGAGACTTTGGACA 59.510 47.619 0.00 0.00 40.68 4.02
1891 1983 3.439825 TGGACAACATCGAATTGACATGG 59.560 43.478 17.08 0.00 0.00 3.66
1892 1984 3.181497 GGACAACATCGAATTGACATGGG 60.181 47.826 17.08 0.00 0.00 4.00
1903 1995 0.321564 TGACATGGGTCTTCGCAAGG 60.322 55.000 0.00 0.00 44.61 3.61
1934 2026 1.626654 GACCTTGTGCACCACGATCG 61.627 60.000 15.69 14.88 37.14 3.69
1939 2031 2.281139 TGCACCACGATCGGCAAA 60.281 55.556 20.98 0.00 32.54 3.68
1995 2087 1.457267 ACATTGGCAGGTTGGTGCA 60.457 52.632 0.00 0.00 45.93 4.57
1996 2088 0.832983 ACATTGGCAGGTTGGTGCAT 60.833 50.000 0.00 0.00 45.93 3.96
2014 2106 2.796593 GCATGAACAAGCCAAAGAACAC 59.203 45.455 0.00 0.00 0.00 3.32
2025 2117 0.095245 AAAGAACACGCGCATCATCG 59.905 50.000 5.73 0.00 0.00 3.84
2084 2176 1.807573 CGCTTCTCCCTCGCTTGAC 60.808 63.158 0.00 0.00 0.00 3.18
2092 2184 2.185350 CTCGCTTGACGGGCTCAT 59.815 61.111 0.00 0.00 43.89 2.90
2103 2195 1.967066 ACGGGCTCATTGAGAGGATAG 59.033 52.381 17.87 4.55 44.86 2.08
2117 2209 1.209747 AGGATAGTGGCGGAAAGGAAC 59.790 52.381 0.00 0.00 0.00 3.62
2153 2245 2.239654 TGGATTGCTTAAGGGAGACTGG 59.760 50.000 4.29 0.00 0.00 4.00
2191 2283 0.600255 CTATTAAGGTGGGCGAGCGG 60.600 60.000 0.00 0.00 0.00 5.52
2214 2306 5.474189 GGCGAGTAGTCCTAGATTATGTTCT 59.526 44.000 0.00 0.00 0.00 3.01
2230 2322 4.703645 TGTTCTTCTCCGAGTAGACATG 57.296 45.455 4.33 0.00 0.00 3.21
2232 2324 3.646736 TCTTCTCCGAGTAGACATGGA 57.353 47.619 0.80 0.00 0.00 3.41
2272 2364 7.191593 AGTTTATATGTACTCCCTCCGTTTT 57.808 36.000 0.00 0.00 0.00 2.43
2273 2365 7.270779 AGTTTATATGTACTCCCTCCGTTTTC 58.729 38.462 0.00 0.00 0.00 2.29
2274 2366 4.684484 ATATGTACTCCCTCCGTTTTCC 57.316 45.455 0.00 0.00 0.00 3.13
2285 2377 0.441145 CCGTTTTCCTTTACTCCGCG 59.559 55.000 0.00 0.00 0.00 6.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.931005 GCCAATCGCCTCTAAACGAG 59.069 55.000 0.00 0.00 42.31 4.18
1 2 0.535335 AGCCAATCGCCTCTAAACGA 59.465 50.000 0.00 0.00 43.33 3.85
2 3 2.128035 CTAGCCAATCGCCTCTAAACG 58.872 52.381 0.00 0.00 38.78 3.60
3 4 2.866762 CACTAGCCAATCGCCTCTAAAC 59.133 50.000 0.00 0.00 38.78 2.01
6 7 1.040646 CCACTAGCCAATCGCCTCTA 58.959 55.000 0.00 0.00 38.78 2.43
7 8 1.690219 CCCACTAGCCAATCGCCTCT 61.690 60.000 0.00 0.00 38.78 3.69
45 46 2.643551 AGCGAAAAACGATGGGATGAT 58.356 42.857 0.00 0.00 45.77 2.45
89 90 5.134725 AGTATTTAGGAACGGAGGGAGTA 57.865 43.478 0.00 0.00 0.00 2.59
90 91 3.991683 AGTATTTAGGAACGGAGGGAGT 58.008 45.455 0.00 0.00 0.00 3.85
91 92 4.161754 ACAAGTATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
92 93 4.098894 ACAAGTATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
93 94 4.161754 AGACAAGTATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
94 95 5.340439 AGACAAGTATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
95 96 7.097834 AGAAAGACAAGTATTTAGGAACGGAG 58.902 38.462 0.00 0.00 0.00 4.63
96 97 7.001099 AGAAAGACAAGTATTTAGGAACGGA 57.999 36.000 0.00 0.00 0.00 4.69
97 98 7.491696 CCTAGAAAGACAAGTATTTAGGAACGG 59.508 40.741 4.01 0.00 26.70 4.44
98 99 7.010275 GCCTAGAAAGACAAGTATTTAGGAACG 59.990 40.741 11.40 0.00 26.70 3.95
99 100 7.822822 TGCCTAGAAAGACAAGTATTTAGGAAC 59.177 37.037 11.40 0.00 26.70 3.62
100 101 7.913789 TGCCTAGAAAGACAAGTATTTAGGAA 58.086 34.615 11.40 1.02 26.70 3.36
101 102 7.490657 TGCCTAGAAAGACAAGTATTTAGGA 57.509 36.000 11.40 0.00 26.70 2.94
102 103 8.738645 AATGCCTAGAAAGACAAGTATTTAGG 57.261 34.615 5.26 5.26 0.00 2.69
104 105 9.733556 TGAAATGCCTAGAAAGACAAGTATTTA 57.266 29.630 0.00 0.00 0.00 1.40
105 106 8.635765 TGAAATGCCTAGAAAGACAAGTATTT 57.364 30.769 0.00 0.00 0.00 1.40
106 107 8.515414 GTTGAAATGCCTAGAAAGACAAGTATT 58.485 33.333 0.00 0.00 0.00 1.89
107 108 7.665559 TGTTGAAATGCCTAGAAAGACAAGTAT 59.334 33.333 0.00 0.00 0.00 2.12
108 109 6.995686 TGTTGAAATGCCTAGAAAGACAAGTA 59.004 34.615 0.00 0.00 0.00 2.24
109 110 5.827797 TGTTGAAATGCCTAGAAAGACAAGT 59.172 36.000 0.00 0.00 0.00 3.16
110 111 6.317789 TGTTGAAATGCCTAGAAAGACAAG 57.682 37.500 0.00 0.00 0.00 3.16
111 112 6.321181 ACTTGTTGAAATGCCTAGAAAGACAA 59.679 34.615 0.00 0.00 0.00 3.18
112 113 5.827797 ACTTGTTGAAATGCCTAGAAAGACA 59.172 36.000 0.00 0.00 0.00 3.41
113 114 6.017109 TCACTTGTTGAAATGCCTAGAAAGAC 60.017 38.462 0.00 0.00 0.00 3.01
114 115 6.017109 GTCACTTGTTGAAATGCCTAGAAAGA 60.017 38.462 0.00 0.00 35.39 2.52
115 116 6.016777 AGTCACTTGTTGAAATGCCTAGAAAG 60.017 38.462 0.00 0.00 35.39 2.62
116 117 5.827797 AGTCACTTGTTGAAATGCCTAGAAA 59.172 36.000 0.00 0.00 35.39 2.52
117 118 5.376625 AGTCACTTGTTGAAATGCCTAGAA 58.623 37.500 0.00 0.00 35.39 2.10
118 119 4.973168 AGTCACTTGTTGAAATGCCTAGA 58.027 39.130 0.00 0.00 35.39 2.43
119 120 5.700832 TGTAGTCACTTGTTGAAATGCCTAG 59.299 40.000 0.00 0.00 35.39 3.02
120 121 5.616270 TGTAGTCACTTGTTGAAATGCCTA 58.384 37.500 0.00 0.00 35.39 3.93
121 122 4.460263 TGTAGTCACTTGTTGAAATGCCT 58.540 39.130 0.00 0.00 35.39 4.75
122 123 4.829064 TGTAGTCACTTGTTGAAATGCC 57.171 40.909 0.00 0.00 35.39 4.40
123 124 6.015504 CGTATGTAGTCACTTGTTGAAATGC 58.984 40.000 0.00 0.00 35.39 3.56
124 125 6.367695 TCCGTATGTAGTCACTTGTTGAAATG 59.632 38.462 0.00 0.00 35.39 2.32
125 126 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
126 127 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
127 128 5.456548 TCCGTATGTAGTCACTTGTTGAA 57.543 39.130 0.00 0.00 35.39 2.69
128 129 4.617530 GCTCCGTATGTAGTCACTTGTTGA 60.618 45.833 0.00 0.00 0.00 3.18
129 130 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
130 131 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
131 132 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
132 133 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
133 134 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
134 135 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
135 136 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
136 137 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
137 138 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
138 139 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
139 140 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
140 141 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
141 142 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
142 143 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
143 144 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
144 145 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
145 146 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
146 147 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
147 148 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
148 149 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
188 189 8.454570 TCAAATGACTAGTACATACGGATGTA 57.545 34.615 16.71 16.71 44.77 2.29
190 191 8.642908 TTTCAAATGACTAGTACATACGGATG 57.357 34.615 5.94 5.94 39.16 3.51
191 192 9.261180 CATTTCAAATGACTAGTACATACGGAT 57.739 33.333 3.82 0.00 0.00 4.18
192 193 8.255206 ACATTTCAAATGACTAGTACATACGGA 58.745 33.333 17.30 0.00 0.00 4.69
193 194 8.420374 ACATTTCAAATGACTAGTACATACGG 57.580 34.615 17.30 0.00 0.00 4.02
194 195 9.302345 AGACATTTCAAATGACTAGTACATACG 57.698 33.333 17.30 0.00 0.00 3.06
218 219 8.248945 CCGTTCCTAAATACTTGTCTTTCTAGA 58.751 37.037 0.00 0.00 0.00 2.43
219 220 8.248945 TCCGTTCCTAAATACTTGTCTTTCTAG 58.751 37.037 0.00 0.00 0.00 2.43
220 221 8.125978 TCCGTTCCTAAATACTTGTCTTTCTA 57.874 34.615 0.00 0.00 0.00 2.10
221 222 7.001099 TCCGTTCCTAAATACTTGTCTTTCT 57.999 36.000 0.00 0.00 0.00 2.52
222 223 6.313164 CCTCCGTTCCTAAATACTTGTCTTTC 59.687 42.308 0.00 0.00 0.00 2.62
223 224 6.171213 CCTCCGTTCCTAAATACTTGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
224 225 5.338137 CCCTCCGTTCCTAAATACTTGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
225 226 4.161754 CCCTCCGTTCCTAAATACTTGTCT 59.838 45.833 0.00 0.00 0.00 3.41
226 227 4.161001 TCCCTCCGTTCCTAAATACTTGTC 59.839 45.833 0.00 0.00 0.00 3.18
227 228 4.098894 TCCCTCCGTTCCTAAATACTTGT 58.901 43.478 0.00 0.00 0.00 3.16
228 229 4.161754 ACTCCCTCCGTTCCTAAATACTTG 59.838 45.833 0.00 0.00 0.00 3.16
229 230 4.359996 ACTCCCTCCGTTCCTAAATACTT 58.640 43.478 0.00 0.00 0.00 2.24
230 231 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
231 232 4.892345 ACTACTCCCTCCGTTCCTAAATAC 59.108 45.833 0.00 0.00 0.00 1.89
232 233 5.134725 ACTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
233 234 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
234 235 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
235 236 3.682718 CGTACTACTCCCTCCGTTCCTAA 60.683 52.174 0.00 0.00 0.00 2.69
236 237 2.158900 CGTACTACTCCCTCCGTTCCTA 60.159 54.545 0.00 0.00 0.00 2.94
237 238 1.407989 CGTACTACTCCCTCCGTTCCT 60.408 57.143 0.00 0.00 0.00 3.36
238 239 1.020437 CGTACTACTCCCTCCGTTCC 58.980 60.000 0.00 0.00 0.00 3.62
239 240 0.380024 GCGTACTACTCCCTCCGTTC 59.620 60.000 0.00 0.00 0.00 3.95
240 241 0.322816 TGCGTACTACTCCCTCCGTT 60.323 55.000 0.00 0.00 0.00 4.44
241 242 0.322816 TTGCGTACTACTCCCTCCGT 60.323 55.000 0.00 0.00 0.00 4.69
242 243 1.030457 ATTGCGTACTACTCCCTCCG 58.970 55.000 0.00 0.00 0.00 4.63
243 244 3.132467 AGAAATTGCGTACTACTCCCTCC 59.868 47.826 0.00 0.00 0.00 4.30
244 245 4.388378 AGAAATTGCGTACTACTCCCTC 57.612 45.455 0.00 0.00 0.00 4.30
245 246 5.198965 TCTAGAAATTGCGTACTACTCCCT 58.801 41.667 0.00 0.00 0.00 4.20
246 247 5.507650 CCTCTAGAAATTGCGTACTACTCCC 60.508 48.000 0.00 0.00 0.00 4.30
247 248 5.298777 TCCTCTAGAAATTGCGTACTACTCC 59.701 44.000 0.00 0.00 0.00 3.85
248 249 6.200808 GTCCTCTAGAAATTGCGTACTACTC 58.799 44.000 0.00 0.00 0.00 2.59
249 250 5.220815 CGTCCTCTAGAAATTGCGTACTACT 60.221 44.000 0.00 0.00 0.00 2.57
250 251 4.968788 CGTCCTCTAGAAATTGCGTACTAC 59.031 45.833 0.00 0.00 0.00 2.73
265 266 0.896940 AACCGTTCAGCCGTCCTCTA 60.897 55.000 0.00 0.00 0.00 2.43
313 343 1.547372 GGTGCAAATCTCACAGCCAAT 59.453 47.619 0.00 0.00 36.22 3.16
314 344 0.961019 GGTGCAAATCTCACAGCCAA 59.039 50.000 0.00 0.00 36.22 4.52
357 388 5.787380 AGGGAAAATTTTGACATCAGCTTC 58.213 37.500 8.47 0.00 0.00 3.86
407 438 6.581166 GGTTGAGCTTATTTTTGTAACTTCGG 59.419 38.462 0.00 0.00 0.00 4.30
408 439 7.136119 TGGTTGAGCTTATTTTTGTAACTTCG 58.864 34.615 0.00 0.00 0.00 3.79
540 571 9.649167 AATATGTAGGAACACAACTTAGTACAC 57.351 33.333 0.00 0.00 38.78 2.90
541 572 9.647797 CAATATGTAGGAACACAACTTAGTACA 57.352 33.333 0.00 0.00 38.78 2.90
618 650 2.193536 ACGGGAGCACAAAGTTGGC 61.194 57.895 0.00 0.00 0.00 4.52
645 689 0.668535 AACCGTGCTCCTTCAAAAGC 59.331 50.000 0.00 0.00 39.02 3.51
675 719 0.815615 ATCCTCGCCCGATTCTTTGC 60.816 55.000 0.00 0.00 0.00 3.68
677 721 2.420058 AAATCCTCGCCCGATTCTTT 57.580 45.000 0.00 0.00 0.00 2.52
680 724 1.137513 CGTAAATCCTCGCCCGATTC 58.862 55.000 0.00 0.00 0.00 2.52
727 771 4.679654 GTCAAAATAAAAAGACGCCACCAG 59.320 41.667 0.00 0.00 0.00 4.00
733 777 9.914923 AAATCAAAAGTCAAAATAAAAAGACGC 57.085 25.926 0.00 0.00 36.18 5.19
798 843 6.090783 GTCAGTCACGAGAAACACACATATA 58.909 40.000 0.00 0.00 0.00 0.86
892 937 2.159653 TCGGTCGCTCGTACTAAGTTTC 60.160 50.000 0.00 0.00 0.00 2.78
964 1009 7.333528 AGTTTCAACAAGTTGCAGAGATAAA 57.666 32.000 8.04 0.00 40.24 1.40
974 1019 9.364989 TCTAAAAATCCAAGTTTCAACAAGTTG 57.635 29.630 6.60 6.60 41.71 3.16
976 1021 9.533253 CATCTAAAAATCCAAGTTTCAACAAGT 57.467 29.630 0.00 0.00 0.00 3.16
977 1022 8.490355 GCATCTAAAAATCCAAGTTTCAACAAG 58.510 33.333 0.00 0.00 0.00 3.16
978 1023 7.984050 TGCATCTAAAAATCCAAGTTTCAACAA 59.016 29.630 0.00 0.00 0.00 2.83
979 1024 7.495901 TGCATCTAAAAATCCAAGTTTCAACA 58.504 30.769 0.00 0.00 0.00 3.33
980 1025 7.945033 TGCATCTAAAAATCCAAGTTTCAAC 57.055 32.000 0.00 0.00 0.00 3.18
981 1026 8.954950 TTTGCATCTAAAAATCCAAGTTTCAA 57.045 26.923 0.00 0.00 0.00 2.69
982 1027 8.954950 TTTTGCATCTAAAAATCCAAGTTTCA 57.045 26.923 0.00 0.00 0.00 2.69
1021 1066 9.083080 CCTTGAAAAACTTAAAGTTTCAACGAT 57.917 29.630 10.11 0.00 46.78 3.73
1022 1067 7.542824 CCCTTGAAAAACTTAAAGTTTCAACGA 59.457 33.333 10.11 5.46 46.78 3.85
1023 1068 7.542824 TCCCTTGAAAAACTTAAAGTTTCAACG 59.457 33.333 10.11 7.37 46.78 4.10
1024 1069 8.766000 TCCCTTGAAAAACTTAAAGTTTCAAC 57.234 30.769 10.11 6.54 46.78 3.18
1025 1070 9.952030 AATCCCTTGAAAAACTTAAAGTTTCAA 57.048 25.926 11.48 11.48 46.78 2.69
1026 1071 9.952030 AAATCCCTTGAAAAACTTAAAGTTTCA 57.048 25.926 0.00 4.83 46.78 2.69
1032 1077 9.952030 ACAAGAAAATCCCTTGAAAAACTTAAA 57.048 25.926 9.52 0.00 42.57 1.52
1033 1078 9.952030 AACAAGAAAATCCCTTGAAAAACTTAA 57.048 25.926 9.52 0.00 42.57 1.85
1034 1079 9.377312 CAACAAGAAAATCCCTTGAAAAACTTA 57.623 29.630 9.52 0.00 42.57 2.24
1035 1080 8.100164 TCAACAAGAAAATCCCTTGAAAAACTT 58.900 29.630 9.52 0.00 42.57 2.66
1036 1081 7.619965 TCAACAAGAAAATCCCTTGAAAAACT 58.380 30.769 9.52 0.00 42.57 2.66
1037 1082 7.841915 TCAACAAGAAAATCCCTTGAAAAAC 57.158 32.000 9.52 0.00 42.57 2.43
1038 1083 8.854614 TTTCAACAAGAAAATCCCTTGAAAAA 57.145 26.923 9.52 4.67 43.00 1.94
1058 1103 9.585099 CGAGAAAATGGGAATAATTGATTTCAA 57.415 29.630 0.00 0.00 40.51 2.69
1059 1104 8.748412 ACGAGAAAATGGGAATAATTGATTTCA 58.252 29.630 0.00 0.00 0.00 2.69
1060 1105 9.586435 AACGAGAAAATGGGAATAATTGATTTC 57.414 29.630 0.00 0.00 0.00 2.17
1061 1106 9.586435 GAACGAGAAAATGGGAATAATTGATTT 57.414 29.630 0.00 0.00 0.00 2.17
1062 1107 8.971073 AGAACGAGAAAATGGGAATAATTGATT 58.029 29.630 0.00 0.00 0.00 2.57
1063 1108 8.525290 AGAACGAGAAAATGGGAATAATTGAT 57.475 30.769 0.00 0.00 0.00 2.57
1064 1109 7.938140 AGAACGAGAAAATGGGAATAATTGA 57.062 32.000 0.00 0.00 0.00 2.57
1065 1110 8.986477 AAAGAACGAGAAAATGGGAATAATTG 57.014 30.769 0.00 0.00 0.00 2.32
1066 1111 7.968405 CGAAAGAACGAGAAAATGGGAATAATT 59.032 33.333 0.00 0.00 35.09 1.40
1067 1112 7.415206 CCGAAAGAACGAGAAAATGGGAATAAT 60.415 37.037 0.00 0.00 35.09 1.28
1068 1113 6.128117 CCGAAAGAACGAGAAAATGGGAATAA 60.128 38.462 0.00 0.00 35.09 1.40
1069 1114 5.353123 CCGAAAGAACGAGAAAATGGGAATA 59.647 40.000 0.00 0.00 35.09 1.75
1070 1115 4.156008 CCGAAAGAACGAGAAAATGGGAAT 59.844 41.667 0.00 0.00 35.09 3.01
1071 1116 3.500680 CCGAAAGAACGAGAAAATGGGAA 59.499 43.478 0.00 0.00 35.09 3.97
1072 1117 3.071479 CCGAAAGAACGAGAAAATGGGA 58.929 45.455 0.00 0.00 35.09 4.37
1073 1118 2.812011 ACCGAAAGAACGAGAAAATGGG 59.188 45.455 0.00 0.00 35.09 4.00
1074 1119 3.120304 GGACCGAAAGAACGAGAAAATGG 60.120 47.826 0.00 0.00 35.09 3.16
1075 1120 3.746492 AGGACCGAAAGAACGAGAAAATG 59.254 43.478 0.00 0.00 35.09 2.32
1076 1121 3.995048 GAGGACCGAAAGAACGAGAAAAT 59.005 43.478 0.00 0.00 35.09 1.82
1077 1122 3.069158 AGAGGACCGAAAGAACGAGAAAA 59.931 43.478 0.00 0.00 35.09 2.29
1078 1123 2.626743 AGAGGACCGAAAGAACGAGAAA 59.373 45.455 0.00 0.00 35.09 2.52
1079 1124 2.030185 CAGAGGACCGAAAGAACGAGAA 60.030 50.000 0.00 0.00 35.09 2.87
1080 1125 1.540267 CAGAGGACCGAAAGAACGAGA 59.460 52.381 0.00 0.00 35.09 4.04
1081 1126 1.983972 CAGAGGACCGAAAGAACGAG 58.016 55.000 0.00 0.00 35.09 4.18
1082 1127 0.038526 GCAGAGGACCGAAAGAACGA 60.039 55.000 0.00 0.00 35.09 3.85
1083 1128 0.038159 AGCAGAGGACCGAAAGAACG 60.038 55.000 0.00 0.00 0.00 3.95
1084 1129 1.715993 GAGCAGAGGACCGAAAGAAC 58.284 55.000 0.00 0.00 0.00 3.01
1085 1130 0.243907 CGAGCAGAGGACCGAAAGAA 59.756 55.000 0.00 0.00 0.00 2.52
1086 1131 1.595993 CCGAGCAGAGGACCGAAAGA 61.596 60.000 0.00 0.00 0.00 2.52
1087 1132 1.153745 CCGAGCAGAGGACCGAAAG 60.154 63.158 0.00 0.00 0.00 2.62
1088 1133 1.469335 AACCGAGCAGAGGACCGAAA 61.469 55.000 0.00 0.00 0.00 3.46
1089 1134 1.874345 GAACCGAGCAGAGGACCGAA 61.874 60.000 0.00 0.00 0.00 4.30
1090 1135 2.282958 AACCGAGCAGAGGACCGA 60.283 61.111 0.00 0.00 0.00 4.69
1091 1136 2.182030 GAACCGAGCAGAGGACCG 59.818 66.667 0.00 0.00 0.00 4.79
1092 1137 0.683504 TAGGAACCGAGCAGAGGACC 60.684 60.000 0.00 0.00 0.00 4.46
1093 1138 1.404843 ATAGGAACCGAGCAGAGGAC 58.595 55.000 0.00 0.00 0.00 3.85
1094 1139 2.092049 TGTATAGGAACCGAGCAGAGGA 60.092 50.000 0.00 0.00 0.00 3.71
1095 1140 2.307768 TGTATAGGAACCGAGCAGAGG 58.692 52.381 0.00 0.00 0.00 3.69
1096 1141 3.858877 GCATGTATAGGAACCGAGCAGAG 60.859 52.174 0.00 0.00 0.00 3.35
1097 1142 2.035961 GCATGTATAGGAACCGAGCAGA 59.964 50.000 0.00 0.00 0.00 4.26
1098 1143 2.224042 TGCATGTATAGGAACCGAGCAG 60.224 50.000 0.00 0.00 0.00 4.24
1099 1144 1.760029 TGCATGTATAGGAACCGAGCA 59.240 47.619 0.00 0.00 0.00 4.26
1100 1145 2.526304 TGCATGTATAGGAACCGAGC 57.474 50.000 0.00 0.00 0.00 5.03
1101 1146 3.187227 GCATTGCATGTATAGGAACCGAG 59.813 47.826 3.15 0.00 0.00 4.63
1102 1147 3.138304 GCATTGCATGTATAGGAACCGA 58.862 45.455 3.15 0.00 0.00 4.69
1103 1148 3.141398 AGCATTGCATGTATAGGAACCG 58.859 45.455 11.91 0.00 0.00 4.44
1104 1149 5.180117 CACTAGCATTGCATGTATAGGAACC 59.820 44.000 11.91 0.00 0.00 3.62
1105 1150 5.334414 GCACTAGCATTGCATGTATAGGAAC 60.334 44.000 11.91 0.00 39.93 3.62
1106 1151 4.756642 GCACTAGCATTGCATGTATAGGAA 59.243 41.667 11.91 0.00 39.93 3.36
1107 1152 4.040829 AGCACTAGCATTGCATGTATAGGA 59.959 41.667 11.91 0.00 45.49 2.94
1108 1153 4.321718 AGCACTAGCATTGCATGTATAGG 58.678 43.478 11.91 0.00 45.49 2.57
1109 1154 5.686834 CAAGCACTAGCATTGCATGTATAG 58.313 41.667 11.91 5.92 45.49 1.31
1110 1155 4.023792 GCAAGCACTAGCATTGCATGTATA 60.024 41.667 17.56 0.00 45.63 1.47
1111 1156 3.243301 GCAAGCACTAGCATTGCATGTAT 60.243 43.478 17.56 0.00 45.63 2.29
1112 1157 2.097954 GCAAGCACTAGCATTGCATGTA 59.902 45.455 17.56 0.00 45.63 2.29
1113 1158 1.135199 GCAAGCACTAGCATTGCATGT 60.135 47.619 17.56 6.09 45.63 3.21
1114 1159 1.556564 GCAAGCACTAGCATTGCATG 58.443 50.000 17.56 11.75 45.63 4.06
1117 1162 1.093159 AGAGCAAGCACTAGCATTGC 58.907 50.000 15.64 15.64 46.14 3.56
1118 1163 2.097142 GGAAGAGCAAGCACTAGCATTG 59.903 50.000 0.00 0.00 45.49 2.82
1119 1164 2.363683 GGAAGAGCAAGCACTAGCATT 58.636 47.619 0.00 0.00 45.49 3.56
1120 1165 1.741732 CGGAAGAGCAAGCACTAGCAT 60.742 52.381 0.00 0.00 45.49 3.79
1121 1166 0.390340 CGGAAGAGCAAGCACTAGCA 60.390 55.000 0.00 0.00 45.49 3.49
1122 1167 0.108615 TCGGAAGAGCAAGCACTAGC 60.109 55.000 0.00 0.00 36.88 3.42
1141 1186 2.176148 TCATGGCATGGATGGTCTTCAT 59.824 45.455 26.15 0.00 39.13 2.57
1142 1187 1.565288 TCATGGCATGGATGGTCTTCA 59.435 47.619 26.15 0.77 0.00 3.02
1143 1188 2.353357 TCATGGCATGGATGGTCTTC 57.647 50.000 26.15 0.00 0.00 2.87
1144 1189 2.291735 TGTTCATGGCATGGATGGTCTT 60.292 45.455 26.15 0.00 0.00 3.01
1145 1190 1.285667 TGTTCATGGCATGGATGGTCT 59.714 47.619 26.15 0.00 0.00 3.85
1146 1191 1.766494 TGTTCATGGCATGGATGGTC 58.234 50.000 26.15 7.37 0.00 4.02
1147 1192 2.104967 CTTGTTCATGGCATGGATGGT 58.895 47.619 26.15 0.00 0.00 3.55
1148 1193 2.380941 TCTTGTTCATGGCATGGATGG 58.619 47.619 26.15 12.35 0.00 3.51
1149 1194 3.634910 TGATCTTGTTCATGGCATGGATG 59.365 43.478 26.15 12.73 0.00 3.51
1150 1195 3.905968 TGATCTTGTTCATGGCATGGAT 58.094 40.909 26.15 19.30 0.00 3.41
1151 1196 3.369242 TGATCTTGTTCATGGCATGGA 57.631 42.857 26.15 16.66 0.00 3.41
1152 1197 3.005472 GGATGATCTTGTTCATGGCATGG 59.995 47.826 26.15 10.68 36.48 3.66
1153 1198 3.304458 CGGATGATCTTGTTCATGGCATG 60.304 47.826 21.42 21.42 36.48 4.06
1154 1199 2.882761 CGGATGATCTTGTTCATGGCAT 59.117 45.455 0.00 0.00 36.48 4.40
1155 1200 2.093021 TCGGATGATCTTGTTCATGGCA 60.093 45.455 0.00 0.00 36.48 4.92
1156 1201 2.547211 CTCGGATGATCTTGTTCATGGC 59.453 50.000 0.00 0.00 36.48 4.40
1157 1202 3.136763 CCTCGGATGATCTTGTTCATGG 58.863 50.000 0.00 0.00 36.48 3.66
1158 1203 4.063998 TCCTCGGATGATCTTGTTCATG 57.936 45.455 0.00 0.00 36.48 3.07
1159 1204 4.970860 ATCCTCGGATGATCTTGTTCAT 57.029 40.909 0.00 0.00 39.04 2.57
1160 1205 4.406972 AGAATCCTCGGATGATCTTGTTCA 59.593 41.667 0.00 0.00 34.70 3.18
1161 1206 4.954875 AGAATCCTCGGATGATCTTGTTC 58.045 43.478 0.00 0.00 34.70 3.18
1162 1207 5.121811 CAAGAATCCTCGGATGATCTTGTT 58.878 41.667 21.55 3.64 40.73 2.83
1163 1208 4.163078 ACAAGAATCCTCGGATGATCTTGT 59.837 41.667 25.92 25.92 46.64 3.16
1164 1209 4.510711 CACAAGAATCCTCGGATGATCTTG 59.489 45.833 25.05 25.05 45.53 3.02
1165 1210 4.444022 CCACAAGAATCCTCGGATGATCTT 60.444 45.833 0.00 3.46 34.10 2.40
1166 1211 3.070734 CCACAAGAATCCTCGGATGATCT 59.929 47.826 0.00 0.00 34.70 2.75
1167 1212 3.181461 ACCACAAGAATCCTCGGATGATC 60.181 47.826 0.00 0.00 34.70 2.92
1168 1213 2.774234 ACCACAAGAATCCTCGGATGAT 59.226 45.455 0.00 0.00 34.70 2.45
1169 1214 2.093500 CACCACAAGAATCCTCGGATGA 60.093 50.000 0.00 0.00 34.70 2.92
1170 1215 2.283298 CACCACAAGAATCCTCGGATG 58.717 52.381 0.00 0.00 34.70 3.51
1171 1216 1.407437 GCACCACAAGAATCCTCGGAT 60.407 52.381 0.00 0.00 36.23 4.18
1172 1217 0.036388 GCACCACAAGAATCCTCGGA 60.036 55.000 0.00 0.00 0.00 4.55
1173 1218 1.361668 CGCACCACAAGAATCCTCGG 61.362 60.000 0.00 0.00 0.00 4.63
1174 1219 1.361668 CCGCACCACAAGAATCCTCG 61.362 60.000 0.00 0.00 0.00 4.63
1175 1220 1.648467 GCCGCACCACAAGAATCCTC 61.648 60.000 0.00 0.00 0.00 3.71
1176 1221 1.675641 GCCGCACCACAAGAATCCT 60.676 57.895 0.00 0.00 0.00 3.24
1177 1222 1.523154 TTGCCGCACCACAAGAATCC 61.523 55.000 0.00 0.00 0.00 3.01
1178 1223 0.313672 TTTGCCGCACCACAAGAATC 59.686 50.000 0.00 0.00 0.00 2.52
1205 1250 3.299503 ACAGAGCAGTTTCCACCATTTT 58.700 40.909 0.00 0.00 0.00 1.82
1254 1299 2.120274 CCCAAACCACCTGCCCAT 59.880 61.111 0.00 0.00 0.00 4.00
1306 1351 0.461961 AGCCACGACTATCTTGCCTC 59.538 55.000 0.00 0.00 0.00 4.70
1316 1361 1.972223 ACTCGCTGTAGCCACGACT 60.972 57.895 0.00 0.00 37.91 4.18
1318 1363 2.566529 CACTCGCTGTAGCCACGA 59.433 61.111 0.00 0.00 37.91 4.35
1352 1397 2.971428 ATTATCAGACCGGTGGCGCG 62.971 60.000 14.63 0.00 0.00 6.86
1354 1399 1.340248 ACTATTATCAGACCGGTGGCG 59.660 52.381 14.63 0.00 0.00 5.69
1355 1400 3.056749 CCTACTATTATCAGACCGGTGGC 60.057 52.174 14.63 0.00 0.00 5.01
1357 1402 3.510360 CCCCTACTATTATCAGACCGGTG 59.490 52.174 14.63 0.00 0.00 4.94
1359 1404 3.762823 GTCCCCTACTATTATCAGACCGG 59.237 52.174 0.00 0.00 0.00 5.28
1360 1405 3.439476 CGTCCCCTACTATTATCAGACCG 59.561 52.174 0.00 0.00 0.00 4.79
1361 1406 3.762823 CCGTCCCCTACTATTATCAGACC 59.237 52.174 0.00 0.00 0.00 3.85
1362 1407 3.762823 CCCGTCCCCTACTATTATCAGAC 59.237 52.174 0.00 0.00 0.00 3.51
1363 1408 3.659195 TCCCGTCCCCTACTATTATCAGA 59.341 47.826 0.00 0.00 0.00 3.27
1364 1409 4.043608 TCCCGTCCCCTACTATTATCAG 57.956 50.000 0.00 0.00 0.00 2.90
1429 1521 1.365699 GTGGCGCGATTTCCTTAAGA 58.634 50.000 12.10 0.00 0.00 2.10
1449 1541 2.879646 GGAGTGACTACCTCATAGACCG 59.120 54.545 0.00 0.00 34.65 4.79
1473 1565 1.857602 GCGATCTTGATTTCCTTGCGC 60.858 52.381 0.00 0.00 35.08 6.09
1486 1578 2.336945 TGGCATCATTGAGCGATCTT 57.663 45.000 0.90 0.00 0.00 2.40
1514 1606 7.048512 GGTTTGATATAAGTTGCCTAGACACT 58.951 38.462 0.00 0.00 0.00 3.55
1521 1613 6.909550 TGTTTGGTTTGATATAAGTTGCCT 57.090 33.333 0.00 0.00 0.00 4.75
1529 1621 5.995282 CGAGCCCTATGTTTGGTTTGATATA 59.005 40.000 0.00 0.00 0.00 0.86
1534 1626 2.420022 CTCGAGCCCTATGTTTGGTTTG 59.580 50.000 0.00 0.00 0.00 2.93
1635 1727 2.434359 CGTCGCCCTTCCAAGACC 60.434 66.667 0.00 0.00 0.00 3.85
1643 1735 1.385528 AAAAACTTGTCGTCGCCCTT 58.614 45.000 0.00 0.00 0.00 3.95
1651 1743 4.758561 CTGAACGGACTAAAAACTTGTCG 58.241 43.478 0.00 0.00 0.00 4.35
1653 1745 4.196971 AGCTGAACGGACTAAAAACTTGT 58.803 39.130 0.00 0.00 0.00 3.16
1683 1775 4.124238 CACCTTTCTACCAACGAACTTCA 58.876 43.478 0.00 0.00 0.00 3.02
1692 1784 0.035739 GGCCGACACCTTTCTACCAA 59.964 55.000 0.00 0.00 0.00 3.67
1754 1846 2.505407 TGGCTAGCCATAGAAAGAAGCA 59.495 45.455 32.88 4.77 41.89 3.91
1850 1942 2.213499 CAAAGTCTCCACTTGCTCGTT 58.787 47.619 0.00 0.00 42.45 3.85
1853 1945 2.147150 GTCCAAAGTCTCCACTTGCTC 58.853 52.381 0.00 0.00 42.45 4.26
1867 1959 5.459768 CATGTCAATTCGATGTTGTCCAAA 58.540 37.500 9.90 0.00 0.00 3.28
1874 1966 3.955471 AGACCCATGTCAATTCGATGTT 58.045 40.909 0.00 0.00 44.33 2.71
1891 1983 0.175073 ATACCGTCCTTGCGAAGACC 59.825 55.000 0.00 0.00 0.00 3.85
1892 1984 1.278238 CATACCGTCCTTGCGAAGAC 58.722 55.000 0.00 0.00 0.00 3.01
1903 1995 1.134788 CACAAGGTCCTCCATACCGTC 60.135 57.143 0.00 0.00 42.15 4.79
1995 2087 2.543653 GCGTGTTCTTTGGCTTGTTCAT 60.544 45.455 0.00 0.00 0.00 2.57
1996 2088 1.202245 GCGTGTTCTTTGGCTTGTTCA 60.202 47.619 0.00 0.00 0.00 3.18
2014 2106 1.386748 CTATGGTTACGATGATGCGCG 59.613 52.381 0.00 0.00 33.86 6.86
2053 2145 4.469227 AGGGAGAAGCGATAATATGATGCT 59.531 41.667 0.00 0.00 37.53 3.79
2059 2151 3.093057 AGCGAGGGAGAAGCGATAATAT 58.907 45.455 0.00 0.00 35.78 1.28
2063 2155 0.385751 CAAGCGAGGGAGAAGCGATA 59.614 55.000 0.00 0.00 35.78 2.92
2064 2156 1.142748 CAAGCGAGGGAGAAGCGAT 59.857 57.895 0.00 0.00 35.78 4.58
2065 2157 1.977009 TCAAGCGAGGGAGAAGCGA 60.977 57.895 0.00 0.00 35.78 4.93
2068 2160 4.485554 CGTCAAGCGAGGGAGAAG 57.514 61.111 0.00 0.00 44.77 2.85
2084 2176 1.967066 ACTATCCTCTCAATGAGCCCG 59.033 52.381 5.18 0.00 41.35 6.13
2092 2184 1.860641 TTCCGCCACTATCCTCTCAA 58.139 50.000 0.00 0.00 0.00 3.02
2103 2195 1.301479 AGTCGTTCCTTTCCGCCAC 60.301 57.895 0.00 0.00 0.00 5.01
2117 2209 2.913054 ATCCAGCACGATGCCAGTCG 62.913 60.000 6.39 2.25 46.52 4.18
2131 2223 3.539604 CAGTCTCCCTTAAGCAATCCAG 58.460 50.000 0.00 0.00 0.00 3.86
2168 2260 2.213499 CTCGCCCACCTTAATAGCTTG 58.787 52.381 0.00 0.00 0.00 4.01
2169 2261 1.475213 GCTCGCCCACCTTAATAGCTT 60.475 52.381 0.00 0.00 0.00 3.74
2191 2283 6.563222 AGAACATAATCTAGGACTACTCGC 57.437 41.667 0.00 0.00 0.00 5.03
2214 2306 2.427453 GCTTCCATGTCTACTCGGAGAA 59.573 50.000 12.86 0.00 34.09 2.87
2230 2322 3.205784 ACTATCATGAGCCAAGCTTCC 57.794 47.619 0.09 0.00 39.88 3.46
2232 2324 7.941238 ACATATAAACTATCATGAGCCAAGCTT 59.059 33.333 0.09 0.00 39.88 3.74
2272 2364 6.037391 CCAAATTTTATACGCGGAGTAAAGGA 59.963 38.462 12.47 0.00 39.04 3.36
2273 2365 6.183360 ACCAAATTTTATACGCGGAGTAAAGG 60.183 38.462 12.47 11.58 39.04 3.11
2274 2366 6.778108 ACCAAATTTTATACGCGGAGTAAAG 58.222 36.000 12.47 3.45 39.04 1.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.