Multiple sequence alignment - TraesCS3A01G081900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G081900 chr3A 100.000 7264 0 0 1 7264 53189067 53181804 0.000000e+00 13415.0
1 TraesCS3A01G081900 chr3A 92.512 3726 165 32 3547 7217 53043331 53039665 0.000000e+00 5230.0
2 TraesCS3A01G081900 chr3A 83.127 646 74 17 194 833 53190969 53190353 2.290000e-154 556.0
3 TraesCS3A01G081900 chr3A 88.980 245 18 5 839 1075 53189172 53188929 1.980000e-75 294.0
4 TraesCS3A01G081900 chr3A 92.143 140 6 4 1 139 53188128 53187993 7.440000e-45 193.0
5 TraesCS3A01G081900 chr3A 97.826 46 1 0 2878 2923 53186148 53186103 6.040000e-11 80.5
6 TraesCS3A01G081900 chr3A 97.826 46 1 0 2920 2965 53186190 53186145 6.040000e-11 80.5
7 TraesCS3A01G081900 chr3A 95.000 40 2 0 6641 6680 53182346 53182307 6.080000e-06 63.9
8 TraesCS3A01G081900 chr3A 95.000 40 2 0 6722 6761 53182427 53182388 6.080000e-06 63.9
9 TraesCS3A01G081900 chr3B 94.743 4204 177 22 2920 7084 64704692 64700494 0.000000e+00 6499.0
10 TraesCS3A01G081900 chr3B 94.774 1282 61 3 1645 2923 64705925 64704647 0.000000e+00 1991.0
11 TraesCS3A01G081900 chr3B 86.802 788 44 22 877 1620 64706692 64705921 0.000000e+00 824.0
12 TraesCS3A01G081900 chr3B 97.080 137 4 0 7081 7217 64700382 64700246 1.580000e-56 231.0
13 TraesCS3A01G081900 chr3B 86.500 200 16 4 216 410 64707740 64707547 7.380000e-50 209.0
14 TraesCS3A01G081900 chr3B 87.786 131 5 3 19 142 64706619 64706493 7.600000e-30 143.0
15 TraesCS3A01G081900 chr3D 93.563 4241 179 54 2920 7110 41674803 41670607 0.000000e+00 6233.0
16 TraesCS3A01G081900 chr3D 88.915 2165 142 44 839 2923 41676904 41674758 0.000000e+00 2579.0
17 TraesCS3A01G081900 chr3D 88.811 143 11 4 1 139 41676807 41676666 3.480000e-38 171.0
18 TraesCS3A01G081900 chr1B 91.667 48 4 0 153 200 90867475 90867522 4.700000e-07 67.6
19 TraesCS3A01G081900 chr1A 93.333 45 3 0 156 200 78315680 78315636 4.700000e-07 67.6
20 TraesCS3A01G081900 chr2B 93.182 44 3 0 153 196 737796599 737796556 1.690000e-06 65.8
21 TraesCS3A01G081900 chr6D 92.500 40 3 0 158 197 446352881 446352842 2.830000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G081900 chr3A 53181804 53189067 7263 True 13415.000000 13415 100.000000 1 7264 1 chr3A.!!$R2 7263
1 TraesCS3A01G081900 chr3A 53039665 53043331 3666 True 5230.000000 5230 92.512000 3547 7217 1 chr3A.!!$R1 3670
2 TraesCS3A01G081900 chr3B 64700246 64707740 7494 True 1649.500000 6499 91.280833 19 7217 6 chr3B.!!$R1 7198
3 TraesCS3A01G081900 chr3D 41670607 41676904 6297 True 2994.333333 6233 90.429667 1 7110 3 chr3D.!!$R1 7109

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
809 917 0.033228 TTTCTTTGGCCCGCAACATG 59.967 50.000 0.0 0.00 0.00 3.21 F
1338 1827 0.753262 TAGATCCGCCTGAAGAAGCC 59.247 55.000 0.0 0.00 0.00 4.35 F
1342 1831 1.303643 CCGCCTGAAGAAGCCCTTT 60.304 57.895 0.0 0.00 34.68 3.11 F
2907 3449 0.534652 GAGGATGTGGGAGATGCAGC 60.535 60.000 0.0 0.00 0.00 5.25 F
2909 3451 0.818445 GGATGTGGGAGATGCAGCTG 60.818 60.000 10.4 10.11 0.00 4.24 F
5357 5914 0.393537 CCACATGGACAGGAAGAGCC 60.394 60.000 0.0 0.00 37.39 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2300 2839 0.035725 CAGGAGGCAGAGCAACATGA 60.036 55.0 0.0 0.0 0.00 3.07 R
2301 2840 0.035725 TCAGGAGGCAGAGCAACATG 60.036 55.0 0.0 0.0 0.00 3.21 R
2930 3472 0.534652 GCTGCATCTCCCACATCCTC 60.535 60.0 0.0 0.0 0.00 3.71 R
4648 5196 7.596749 AAGTTTAATCAGGTTAGTGTGATCG 57.403 36.0 0.0 0.0 32.02 3.69 R
5462 6022 2.749800 GCCCACCTGAAGACTTTGAACT 60.750 50.0 0.0 0.0 0.00 3.01 R
7233 7968 0.251916 TTGCAATGGGTCTCGGTAGG 59.748 55.0 0.0 0.0 0.00 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.569179 AGATTTTGTGGTGGTACATACAAC 57.431 37.500 0.00 0.00 43.88 3.32
24 25 6.065374 AGATTTTGTGGTGGTACATACAACA 58.935 36.000 5.80 5.80 43.88 3.33
25 26 6.547880 AGATTTTGTGGTGGTACATACAACAA 59.452 34.615 14.86 14.86 43.88 2.83
26 27 6.525578 TTTTGTGGTGGTACATACAACAAA 57.474 33.333 21.74 21.74 43.88 2.83
27 28 6.525578 TTTGTGGTGGTACATACAACAAAA 57.474 33.333 22.66 9.10 43.88 2.44
28 29 5.759506 TGTGGTGGTACATACAACAAAAG 57.240 39.130 7.12 0.00 44.52 2.27
29 30 4.580995 TGTGGTGGTACATACAACAAAAGG 59.419 41.667 7.12 0.00 44.52 3.11
30 31 4.581409 GTGGTGGTACATACAACAAAAGGT 59.419 41.667 0.00 0.00 44.52 3.50
31 32 5.068067 GTGGTGGTACATACAACAAAAGGTT 59.932 40.000 0.00 0.00 44.52 3.50
32 33 5.657302 TGGTGGTACATACAACAAAAGGTTT 59.343 36.000 0.00 0.00 44.52 3.27
33 34 6.154706 TGGTGGTACATACAACAAAAGGTTTT 59.845 34.615 0.00 0.00 44.52 2.43
34 35 7.341256 TGGTGGTACATACAACAAAAGGTTTTA 59.659 33.333 0.00 0.00 44.52 1.52
35 36 8.361889 GGTGGTACATACAACAAAAGGTTTTAT 58.638 33.333 0.00 0.00 44.52 1.40
36 37 9.752961 GTGGTACATACAACAAAAGGTTTTATT 57.247 29.630 0.00 0.00 44.52 1.40
37 38 9.968870 TGGTACATACAACAAAAGGTTTTATTC 57.031 29.630 0.00 0.00 37.72 1.75
38 39 9.414295 GGTACATACAACAAAAGGTTTTATTCC 57.586 33.333 0.00 0.00 37.72 3.01
41 42 7.655732 ACATACAACAAAAGGTTTTATTCCTGC 59.344 33.333 0.00 0.00 37.72 4.85
42 43 5.047188 ACAACAAAAGGTTTTATTCCTGCG 58.953 37.500 0.00 0.00 37.72 5.18
43 44 3.649073 ACAAAAGGTTTTATTCCTGCGC 58.351 40.909 0.00 0.00 35.27 6.09
44 45 2.993220 CAAAAGGTTTTATTCCTGCGCC 59.007 45.455 4.18 0.00 35.27 6.53
45 46 1.917872 AAGGTTTTATTCCTGCGCCA 58.082 45.000 4.18 0.00 35.27 5.69
46 47 1.917872 AGGTTTTATTCCTGCGCCAA 58.082 45.000 4.18 0.00 33.62 4.52
47 48 2.243810 AGGTTTTATTCCTGCGCCAAA 58.756 42.857 4.18 0.00 33.62 3.28
48 49 2.231235 AGGTTTTATTCCTGCGCCAAAG 59.769 45.455 4.18 0.00 33.62 2.77
49 50 1.992667 GTTTTATTCCTGCGCCAAAGC 59.007 47.619 4.18 0.00 37.71 3.51
50 51 0.530288 TTTATTCCTGCGCCAAAGCC 59.470 50.000 4.18 0.00 36.02 4.35
51 52 1.653094 TTATTCCTGCGCCAAAGCCG 61.653 55.000 4.18 0.00 36.02 5.52
52 53 2.529454 TATTCCTGCGCCAAAGCCGA 62.529 55.000 4.18 0.00 36.02 5.54
58 59 2.821366 CGCCAAAGCCGAGCTGAT 60.821 61.111 0.00 0.00 39.62 2.90
59 60 2.796651 GCCAAAGCCGAGCTGATG 59.203 61.111 0.00 2.92 39.62 3.07
60 61 1.746615 GCCAAAGCCGAGCTGATGA 60.747 57.895 0.00 0.00 39.62 2.92
61 62 1.308069 GCCAAAGCCGAGCTGATGAA 61.308 55.000 0.00 0.00 39.62 2.57
62 63 0.449388 CCAAAGCCGAGCTGATGAAC 59.551 55.000 0.00 0.00 39.62 3.18
63 64 0.449388 CAAAGCCGAGCTGATGAACC 59.551 55.000 0.00 0.00 39.62 3.62
64 65 1.021390 AAAGCCGAGCTGATGAACCG 61.021 55.000 0.00 0.00 39.62 4.44
65 66 1.888436 AAGCCGAGCTGATGAACCGA 61.888 55.000 0.00 0.00 39.62 4.69
66 67 2.167861 GCCGAGCTGATGAACCGAC 61.168 63.158 0.00 0.00 0.00 4.79
67 68 1.513158 CCGAGCTGATGAACCGACT 59.487 57.895 0.00 0.00 0.00 4.18
68 69 0.108615 CCGAGCTGATGAACCGACTT 60.109 55.000 0.00 0.00 0.00 3.01
69 70 0.994995 CGAGCTGATGAACCGACTTG 59.005 55.000 0.00 0.00 0.00 3.16
70 71 1.363744 GAGCTGATGAACCGACTTGG 58.636 55.000 0.00 0.00 46.41 3.61
71 72 0.036010 AGCTGATGAACCGACTTGGG 60.036 55.000 0.00 0.00 44.64 4.12
72 73 1.026718 GCTGATGAACCGACTTGGGG 61.027 60.000 0.00 0.00 44.64 4.96
73 74 0.613260 CTGATGAACCGACTTGGGGA 59.387 55.000 0.00 0.00 44.64 4.81
74 75 0.613260 TGATGAACCGACTTGGGGAG 59.387 55.000 0.00 0.00 44.64 4.30
75 76 0.902531 GATGAACCGACTTGGGGAGA 59.097 55.000 0.00 0.00 44.64 3.71
76 77 0.905357 ATGAACCGACTTGGGGAGAG 59.095 55.000 0.00 0.00 44.64 3.20
77 78 1.192146 TGAACCGACTTGGGGAGAGG 61.192 60.000 0.00 0.00 44.64 3.69
78 79 1.900545 GAACCGACTTGGGGAGAGGG 61.901 65.000 0.00 0.00 44.64 4.30
79 80 2.038975 CCGACTTGGGGAGAGGGA 59.961 66.667 0.00 0.00 0.00 4.20
80 81 2.060980 CCGACTTGGGGAGAGGGAG 61.061 68.421 0.00 0.00 0.00 4.30
81 82 1.000486 CGACTTGGGGAGAGGGAGA 60.000 63.158 0.00 0.00 0.00 3.71
82 83 1.040339 CGACTTGGGGAGAGGGAGAG 61.040 65.000 0.00 0.00 0.00 3.20
83 84 0.336737 GACTTGGGGAGAGGGAGAGA 59.663 60.000 0.00 0.00 0.00 3.10
84 85 0.338120 ACTTGGGGAGAGGGAGAGAG 59.662 60.000 0.00 0.00 0.00 3.20
85 86 0.633921 CTTGGGGAGAGGGAGAGAGA 59.366 60.000 0.00 0.00 0.00 3.10
86 87 0.633921 TTGGGGAGAGGGAGAGAGAG 59.366 60.000 0.00 0.00 0.00 3.20
87 88 0.253868 TGGGGAGAGGGAGAGAGAGA 60.254 60.000 0.00 0.00 0.00 3.10
88 89 0.478507 GGGGAGAGGGAGAGAGAGAG 59.521 65.000 0.00 0.00 0.00 3.20
89 90 0.478507 GGGAGAGGGAGAGAGAGAGG 59.521 65.000 0.00 0.00 0.00 3.69
90 91 0.478507 GGAGAGGGAGAGAGAGAGGG 59.521 65.000 0.00 0.00 0.00 4.30
91 92 1.222567 GAGAGGGAGAGAGAGAGGGT 58.777 60.000 0.00 0.00 0.00 4.34
92 93 1.143073 GAGAGGGAGAGAGAGAGGGTC 59.857 61.905 0.00 0.00 0.00 4.46
93 94 1.222567 GAGGGAGAGAGAGAGGGTCT 58.777 60.000 0.00 0.00 38.71 3.85
94 95 1.569072 GAGGGAGAGAGAGAGGGTCTT 59.431 57.143 0.00 0.00 34.71 3.01
95 96 1.569072 AGGGAGAGAGAGAGGGTCTTC 59.431 57.143 0.00 0.00 34.71 2.87
96 97 1.569072 GGGAGAGAGAGAGGGTCTTCT 59.431 57.143 0.00 0.00 34.71 2.85
97 98 2.024369 GGGAGAGAGAGAGGGTCTTCTT 60.024 54.545 0.00 0.00 34.71 2.52
98 99 3.288092 GGAGAGAGAGAGGGTCTTCTTC 58.712 54.545 0.00 0.00 34.71 2.87
99 100 3.053619 GGAGAGAGAGAGGGTCTTCTTCT 60.054 52.174 0.00 0.00 34.71 2.85
100 101 4.569865 GGAGAGAGAGAGGGTCTTCTTCTT 60.570 50.000 0.00 0.00 34.71 2.52
101 102 4.600062 AGAGAGAGAGGGTCTTCTTCTTC 58.400 47.826 0.00 0.00 34.71 2.87
102 103 3.699538 GAGAGAGAGGGTCTTCTTCTTCC 59.300 52.174 0.00 0.00 34.71 3.46
103 104 3.336694 AGAGAGAGGGTCTTCTTCTTCCT 59.663 47.826 0.00 0.00 34.71 3.36
104 105 3.699538 GAGAGAGGGTCTTCTTCTTCCTC 59.300 52.174 0.00 0.00 43.07 3.71
105 106 2.764010 GAGAGGGTCTTCTTCTTCCTCC 59.236 54.545 0.00 0.00 43.61 4.30
106 107 1.834896 GAGGGTCTTCTTCTTCCTCCC 59.165 57.143 0.00 0.00 38.36 4.30
107 108 0.913205 GGGTCTTCTTCTTCCTCCCC 59.087 60.000 0.00 0.00 0.00 4.81
108 109 1.556002 GGGTCTTCTTCTTCCTCCCCT 60.556 57.143 0.00 0.00 0.00 4.79
109 110 1.834896 GGTCTTCTTCTTCCTCCCCTC 59.165 57.143 0.00 0.00 0.00 4.30
110 111 1.834896 GTCTTCTTCTTCCTCCCCTCC 59.165 57.143 0.00 0.00 0.00 4.30
111 112 0.827368 CTTCTTCTTCCTCCCCTCCG 59.173 60.000 0.00 0.00 0.00 4.63
112 113 0.412244 TTCTTCTTCCTCCCCTCCGA 59.588 55.000 0.00 0.00 0.00 4.55
113 114 0.324460 TCTTCTTCCTCCCCTCCGAC 60.324 60.000 0.00 0.00 0.00 4.79
114 115 0.324830 CTTCTTCCTCCCCTCCGACT 60.325 60.000 0.00 0.00 0.00 4.18
115 116 0.324460 TTCTTCCTCCCCTCCGACTC 60.324 60.000 0.00 0.00 0.00 3.36
116 117 1.758906 CTTCCTCCCCTCCGACTCC 60.759 68.421 0.00 0.00 0.00 3.85
117 118 3.657038 TTCCTCCCCTCCGACTCCG 62.657 68.421 0.00 0.00 0.00 4.63
118 119 4.124943 CCTCCCCTCCGACTCCGA 62.125 72.222 0.00 0.00 38.22 4.55
119 120 2.829458 CTCCCCTCCGACTCCGAC 60.829 72.222 0.00 0.00 38.22 4.79
120 121 3.336568 TCCCCTCCGACTCCGACT 61.337 66.667 0.00 0.00 38.22 4.18
121 122 2.829458 CCCCTCCGACTCCGACTC 60.829 72.222 0.00 0.00 38.22 3.36
122 123 2.829458 CCCTCCGACTCCGACTCC 60.829 72.222 0.00 0.00 38.22 3.85
123 124 3.203412 CCTCCGACTCCGACTCCG 61.203 72.222 0.00 0.00 38.22 4.63
124 125 3.878519 CTCCGACTCCGACTCCGC 61.879 72.222 0.00 0.00 38.22 5.54
132 133 4.109675 CCGACTCCGCCCCCAAAT 62.110 66.667 0.00 0.00 0.00 2.32
133 134 2.045340 CGACTCCGCCCCCAAATT 60.045 61.111 0.00 0.00 0.00 1.82
134 135 2.112815 CGACTCCGCCCCCAAATTC 61.113 63.158 0.00 0.00 0.00 2.17
135 136 2.045340 ACTCCGCCCCCAAATTCG 60.045 61.111 0.00 0.00 0.00 3.34
136 137 2.828549 CTCCGCCCCCAAATTCGG 60.829 66.667 0.00 0.00 42.96 4.30
140 141 3.460868 GCCCCCAAATTCGGCCTG 61.461 66.667 0.00 0.00 36.63 4.85
141 142 2.358619 CCCCCAAATTCGGCCTGA 59.641 61.111 0.00 0.00 0.00 3.86
142 143 1.304879 CCCCCAAATTCGGCCTGAA 60.305 57.895 11.52 11.52 41.81 3.02
143 144 0.902516 CCCCCAAATTCGGCCTGAAA 60.903 55.000 12.83 0.00 40.71 2.69
144 145 0.246360 CCCCAAATTCGGCCTGAAAC 59.754 55.000 12.83 0.00 40.71 2.78
145 146 0.109319 CCCAAATTCGGCCTGAAACG 60.109 55.000 12.83 5.85 40.71 3.60
146 147 0.596082 CCAAATTCGGCCTGAAACGT 59.404 50.000 12.83 0.00 40.71 3.99
147 148 1.000717 CCAAATTCGGCCTGAAACGTT 60.001 47.619 12.83 0.00 40.71 3.99
148 149 2.050691 CAAATTCGGCCTGAAACGTTG 58.949 47.619 0.00 12.67 40.71 4.10
149 150 1.600023 AATTCGGCCTGAAACGTTGA 58.400 45.000 0.00 0.00 40.71 3.18
150 151 1.600023 ATTCGGCCTGAAACGTTGAA 58.400 45.000 0.00 0.00 40.71 2.69
151 152 1.600023 TTCGGCCTGAAACGTTGAAT 58.400 45.000 0.00 0.00 32.37 2.57
152 153 0.871722 TCGGCCTGAAACGTTGAATG 59.128 50.000 0.00 0.00 0.00 2.67
153 154 0.729140 CGGCCTGAAACGTTGAATGC 60.729 55.000 0.00 2.92 0.00 3.56
154 155 0.729140 GGCCTGAAACGTTGAATGCG 60.729 55.000 0.00 0.00 0.00 4.73
155 156 0.040425 GCCTGAAACGTTGAATGCGT 60.040 50.000 0.00 0.00 45.07 5.24
156 157 1.673760 CCTGAAACGTTGAATGCGTG 58.326 50.000 0.00 0.00 42.10 5.34
157 158 1.262950 CCTGAAACGTTGAATGCGTGA 59.737 47.619 0.00 0.00 42.10 4.35
158 159 2.563976 CTGAAACGTTGAATGCGTGAG 58.436 47.619 0.00 0.00 42.10 3.51
159 160 2.205911 TGAAACGTTGAATGCGTGAGA 58.794 42.857 0.00 0.00 42.10 3.27
160 161 2.220824 TGAAACGTTGAATGCGTGAGAG 59.779 45.455 0.00 0.00 42.10 3.20
161 162 1.148310 AACGTTGAATGCGTGAGAGG 58.852 50.000 0.00 0.00 42.10 3.69
162 163 0.670546 ACGTTGAATGCGTGAGAGGG 60.671 55.000 0.00 0.00 41.33 4.30
163 164 1.796796 GTTGAATGCGTGAGAGGGC 59.203 57.895 0.00 0.00 0.00 5.19
164 165 0.674895 GTTGAATGCGTGAGAGGGCT 60.675 55.000 0.00 0.00 0.00 5.19
165 166 0.674581 TTGAATGCGTGAGAGGGCTG 60.675 55.000 0.00 0.00 0.00 4.85
166 167 1.817099 GAATGCGTGAGAGGGCTGG 60.817 63.158 0.00 0.00 0.00 4.85
167 168 3.335356 AATGCGTGAGAGGGCTGGG 62.335 63.158 0.00 0.00 0.00 4.45
169 170 3.706373 GCGTGAGAGGGCTGGGAA 61.706 66.667 0.00 0.00 0.00 3.97
170 171 2.581354 CGTGAGAGGGCTGGGAAG 59.419 66.667 0.00 0.00 0.00 3.46
171 172 1.984570 CGTGAGAGGGCTGGGAAGA 60.985 63.158 0.00 0.00 0.00 2.87
172 173 1.904032 GTGAGAGGGCTGGGAAGAG 59.096 63.158 0.00 0.00 0.00 2.85
173 174 1.306482 TGAGAGGGCTGGGAAGAGG 60.306 63.158 0.00 0.00 0.00 3.69
174 175 2.690510 AGAGGGCTGGGAAGAGGC 60.691 66.667 0.00 0.00 37.80 4.70
175 176 2.690510 GAGGGCTGGGAAGAGGCT 60.691 66.667 0.00 0.00 38.57 4.58
176 177 2.690510 AGGGCTGGGAAGAGGCTC 60.691 66.667 6.34 6.34 38.57 4.70
177 178 3.011517 GGGCTGGGAAGAGGCTCA 61.012 66.667 18.26 0.00 38.57 4.26
178 179 2.588989 GGCTGGGAAGAGGCTCAG 59.411 66.667 18.26 6.53 39.42 3.35
179 180 2.297129 GGCTGGGAAGAGGCTCAGT 61.297 63.158 18.26 3.53 38.65 3.41
180 181 1.682257 GCTGGGAAGAGGCTCAGTT 59.318 57.895 18.26 2.55 38.65 3.16
181 182 0.037447 GCTGGGAAGAGGCTCAGTTT 59.963 55.000 18.26 1.72 38.65 2.66
182 183 1.546548 GCTGGGAAGAGGCTCAGTTTT 60.547 52.381 18.26 1.30 38.65 2.43
183 184 2.290323 GCTGGGAAGAGGCTCAGTTTTA 60.290 50.000 18.26 0.00 38.65 1.52
184 185 3.339141 CTGGGAAGAGGCTCAGTTTTAC 58.661 50.000 18.26 2.38 31.63 2.01
185 186 2.979678 TGGGAAGAGGCTCAGTTTTACT 59.020 45.455 18.26 0.00 0.00 2.24
187 188 3.244596 GGGAAGAGGCTCAGTTTTACTGT 60.245 47.826 18.26 0.00 46.03 3.55
188 189 3.997681 GGAAGAGGCTCAGTTTTACTGTC 59.002 47.826 18.26 0.00 46.03 3.51
189 190 3.686916 AGAGGCTCAGTTTTACTGTCC 57.313 47.619 18.26 8.98 46.03 4.02
190 191 3.243724 AGAGGCTCAGTTTTACTGTCCT 58.756 45.455 18.26 16.91 46.03 3.85
191 192 3.648545 AGAGGCTCAGTTTTACTGTCCTT 59.351 43.478 18.26 9.81 46.03 3.36
192 193 4.838986 AGAGGCTCAGTTTTACTGTCCTTA 59.161 41.667 18.26 0.00 46.03 2.69
193 194 5.307196 AGAGGCTCAGTTTTACTGTCCTTAA 59.693 40.000 18.26 0.00 46.03 1.85
194 195 6.013293 AGAGGCTCAGTTTTACTGTCCTTAAT 60.013 38.462 18.26 9.46 46.03 1.40
195 196 5.940470 AGGCTCAGTTTTACTGTCCTTAATG 59.060 40.000 13.52 0.00 46.03 1.90
196 197 5.938125 GGCTCAGTTTTACTGTCCTTAATGA 59.062 40.000 6.71 0.00 46.03 2.57
197 198 6.128254 GGCTCAGTTTTACTGTCCTTAATGAC 60.128 42.308 6.71 4.11 46.03 3.06
198 199 6.426937 GCTCAGTTTTACTGTCCTTAATGACA 59.573 38.462 12.28 12.28 46.03 3.58
199 200 7.041372 GCTCAGTTTTACTGTCCTTAATGACAA 60.041 37.037 13.58 0.00 46.03 3.18
200 201 8.740123 TCAGTTTTACTGTCCTTAATGACAAA 57.260 30.769 13.58 4.87 46.03 2.83
201 202 9.179909 TCAGTTTTACTGTCCTTAATGACAAAA 57.820 29.630 13.58 9.80 46.03 2.44
202 203 9.233232 CAGTTTTACTGTCCTTAATGACAAAAC 57.767 33.333 20.56 20.56 44.19 2.43
203 204 8.962679 AGTTTTACTGTCCTTAATGACAAAACA 58.037 29.630 25.19 12.38 44.19 2.83
204 205 9.575783 GTTTTACTGTCCTTAATGACAAAACAA 57.424 29.630 21.89 10.45 44.19 2.83
208 209 8.458573 ACTGTCCTTAATGACAAAACAATACA 57.541 30.769 13.58 0.00 44.19 2.29
209 210 8.908903 ACTGTCCTTAATGACAAAACAATACAA 58.091 29.630 13.58 0.00 44.19 2.41
210 211 9.743057 CTGTCCTTAATGACAAAACAATACAAA 57.257 29.630 13.58 0.00 44.19 2.83
211 212 9.522804 TGTCCTTAATGACAAAACAATACAAAC 57.477 29.630 10.71 0.00 42.06 2.93
212 213 8.687301 GTCCTTAATGACAAAACAATACAAACG 58.313 33.333 6.06 0.00 35.29 3.60
213 214 8.407064 TCCTTAATGACAAAACAATACAAACGT 58.593 29.630 0.00 0.00 0.00 3.99
214 215 9.026074 CCTTAATGACAAAACAATACAAACGTT 57.974 29.630 0.00 0.00 0.00 3.99
219 220 8.967552 TGACAAAACAATACAAACGTTAAAGT 57.032 26.923 0.00 3.61 0.00 2.66
229 230 9.762933 AATACAAACGTTAAAGTTAGGTCTACA 57.237 29.630 7.22 0.00 33.41 2.74
279 280 8.185003 ACAAGTTAAGTTTGAATTTTCAGTGC 57.815 30.769 6.64 0.00 38.61 4.40
284 285 8.655970 GTTAAGTTTGAATTTTCAGTGCAAAGT 58.344 29.630 0.00 0.00 38.61 2.66
286 287 8.770438 AAGTTTGAATTTTCAGTGCAAAGTTA 57.230 26.923 0.00 0.00 39.16 2.24
304 310 9.537192 GCAAAGTTATTTTTAAGTACAAAGGGT 57.463 29.630 0.00 0.00 0.00 4.34
367 373 9.809096 ATTACAGGATCACTATCTATTTATGCG 57.191 33.333 0.00 0.00 32.29 4.73
417 423 9.082313 AGTTGAATTCCCTATTTATAAGCCATG 57.918 33.333 2.27 0.00 0.00 3.66
418 424 9.077885 GTTGAATTCCCTATTTATAAGCCATGA 57.922 33.333 2.27 0.00 0.00 3.07
420 426 9.827198 TGAATTCCCTATTTATAAGCCATGAAT 57.173 29.630 2.27 0.00 0.00 2.57
422 428 8.829373 ATTCCCTATTTATAAGCCATGAATCC 57.171 34.615 0.00 0.00 0.00 3.01
427 433 9.606631 CCTATTTATAAGCCATGAATCCTCTAC 57.393 37.037 0.00 0.00 0.00 2.59
472 518 1.138036 GGCCGTTAAATTGCCGACC 59.862 57.895 0.00 0.00 35.08 4.79
474 520 0.241481 GCCGTTAAATTGCCGACCAA 59.759 50.000 0.00 0.00 37.94 3.67
479 525 4.201970 CCGTTAAATTGCCGACCAATGTAT 60.202 41.667 2.68 0.00 43.22 2.29
482 528 7.095144 CCGTTAAATTGCCGACCAATGTATATA 60.095 37.037 2.68 0.00 43.22 0.86
483 529 8.447833 CGTTAAATTGCCGACCAATGTATATAT 58.552 33.333 2.68 0.00 43.22 0.86
496 542 8.464404 ACCAATGTATATATCATTGCTTCATGC 58.536 33.333 20.84 0.00 45.96 4.06
527 573 6.069963 GCATATGGATAAATCTACCCAGACCT 60.070 42.308 4.56 0.00 32.25 3.85
531 577 5.366768 TGGATAAATCTACCCAGACCTCAAG 59.633 44.000 0.00 0.00 32.25 3.02
540 586 4.421365 GACCTCAAGGGCATTGCA 57.579 55.556 11.39 0.00 44.76 4.08
542 588 1.304713 ACCTCAAGGGCATTGCAGG 60.305 57.895 20.89 20.89 39.84 4.85
563 609 5.240623 CAGGCAAGTAACAACCAAATCTACA 59.759 40.000 0.00 0.00 0.00 2.74
565 611 5.335661 GGCAAGTAACAACCAAATCTACAGG 60.336 44.000 0.00 0.00 0.00 4.00
570 616 8.387190 AGTAACAACCAAATCTACAGGTTTAC 57.613 34.615 0.00 0.00 42.72 2.01
572 618 6.628919 ACAACCAAATCTACAGGTTTACAC 57.371 37.500 0.00 0.00 42.72 2.90
573 619 6.362248 ACAACCAAATCTACAGGTTTACACT 58.638 36.000 0.00 0.00 42.72 3.55
574 620 6.831868 ACAACCAAATCTACAGGTTTACACTT 59.168 34.615 0.00 0.00 42.72 3.16
582 628 6.278363 TCTACAGGTTTACACTTGTCTCAAC 58.722 40.000 0.00 0.00 42.08 3.18
595 641 1.949525 GTCTCAACCAAGCAGCTTTCA 59.050 47.619 4.38 0.00 0.00 2.69
596 642 2.031333 GTCTCAACCAAGCAGCTTTCAG 60.031 50.000 4.38 0.00 0.00 3.02
609 655 3.208915 GCTTTCAGCTTTTCTACAGCC 57.791 47.619 0.00 0.00 38.45 4.85
610 656 2.554032 GCTTTCAGCTTTTCTACAGCCA 59.446 45.455 0.00 0.00 38.45 4.75
611 657 3.365767 GCTTTCAGCTTTTCTACAGCCAG 60.366 47.826 0.00 0.00 38.45 4.85
613 659 3.769739 TCAGCTTTTCTACAGCCAGAA 57.230 42.857 0.00 0.00 38.09 3.02
616 662 5.072741 TCAGCTTTTCTACAGCCAGAAATT 58.927 37.500 6.59 0.00 42.53 1.82
617 663 5.182001 TCAGCTTTTCTACAGCCAGAAATTC 59.818 40.000 6.59 0.00 42.53 2.17
619 665 5.048434 AGCTTTTCTACAGCCAGAAATTCAC 60.048 40.000 6.59 0.00 42.53 3.18
620 666 5.356882 TTTTCTACAGCCAGAAATTCACG 57.643 39.130 6.59 0.00 42.53 4.35
629 675 5.117592 CAGCCAGAAATTCACGTCAATTTTC 59.882 40.000 11.58 8.63 36.33 2.29
630 676 5.010012 AGCCAGAAATTCACGTCAATTTTCT 59.990 36.000 11.58 10.48 36.33 2.52
631 677 5.343325 GCCAGAAATTCACGTCAATTTTCTC 59.657 40.000 11.58 0.00 36.33 2.87
632 678 6.437928 CCAGAAATTCACGTCAATTTTCTCA 58.562 36.000 11.58 0.00 36.33 3.27
633 679 7.086376 CCAGAAATTCACGTCAATTTTCTCAT 58.914 34.615 11.58 0.00 36.33 2.90
634 680 7.061441 CCAGAAATTCACGTCAATTTTCTCATG 59.939 37.037 11.58 6.28 36.33 3.07
640 686 3.820467 ACGTCAATTTTCTCATGGCTCAA 59.180 39.130 0.00 0.00 0.00 3.02
642 688 4.154737 CGTCAATTTTCTCATGGCTCAAGA 59.845 41.667 0.00 0.00 0.00 3.02
687 733 2.529151 CACAGCTCAACCAAACACAAC 58.471 47.619 0.00 0.00 0.00 3.32
695 741 4.734917 TCAACCAAACACAACCTTTAACG 58.265 39.130 0.00 0.00 0.00 3.18
698 744 5.388408 ACCAAACACAACCTTTAACGAAA 57.612 34.783 0.00 0.00 0.00 3.46
700 746 4.563580 CCAAACACAACCTTTAACGAAACC 59.436 41.667 0.00 0.00 0.00 3.27
702 748 4.888038 ACACAACCTTTAACGAAACCTC 57.112 40.909 0.00 0.00 0.00 3.85
703 749 3.628942 ACACAACCTTTAACGAAACCTCC 59.371 43.478 0.00 0.00 0.00 4.30
704 750 3.881089 CACAACCTTTAACGAAACCTCCT 59.119 43.478 0.00 0.00 0.00 3.69
705 751 4.337274 CACAACCTTTAACGAAACCTCCTT 59.663 41.667 0.00 0.00 0.00 3.36
706 752 5.528320 CACAACCTTTAACGAAACCTCCTTA 59.472 40.000 0.00 0.00 0.00 2.69
717 825 2.764439 ACCTCCTTAGCGAAACCTTC 57.236 50.000 0.00 0.00 0.00 3.46
720 828 2.622436 CTCCTTAGCGAAACCTTCTGG 58.378 52.381 0.00 0.00 39.83 3.86
744 852 7.068348 TGGTTATGTTTTAGGTAGTTTGTGCAA 59.932 33.333 0.00 0.00 0.00 4.08
749 857 5.957842 TTTAGGTAGTTTGTGCAATCTGG 57.042 39.130 0.00 0.00 0.00 3.86
759 867 3.966979 TGTGCAATCTGGTACATGGATT 58.033 40.909 0.00 0.00 38.20 3.01
761 869 4.771577 TGTGCAATCTGGTACATGGATTTT 59.228 37.500 0.00 0.00 38.20 1.82
773 881 1.091537 TGGATTTTGACCCGCGATTC 58.908 50.000 8.23 3.39 0.00 2.52
806 914 3.371087 TTTTTCTTTGGCCCGCAAC 57.629 47.368 0.00 0.00 0.00 4.17
807 915 0.537188 TTTTTCTTTGGCCCGCAACA 59.463 45.000 0.00 0.00 0.00 3.33
808 916 0.755686 TTTTCTTTGGCCCGCAACAT 59.244 45.000 0.00 0.00 0.00 2.71
809 917 0.033228 TTTCTTTGGCCCGCAACATG 59.967 50.000 0.00 0.00 0.00 3.21
810 918 1.112315 TTCTTTGGCCCGCAACATGT 61.112 50.000 0.00 0.00 0.00 3.21
870 989 5.946942 AGCAGATTTGACATTAGAGGAGA 57.053 39.130 0.00 0.00 0.00 3.71
873 992 5.984926 GCAGATTTGACATTAGAGGAGAGAG 59.015 44.000 0.00 0.00 0.00 3.20
874 993 5.984926 CAGATTTGACATTAGAGGAGAGAGC 59.015 44.000 0.00 0.00 0.00 4.09
923 1369 4.389135 CGTACACACGCACGCACG 62.389 66.667 0.00 0.00 42.05 5.34
924 1370 4.696172 GTACACACGCACGCACGC 62.696 66.667 0.00 0.00 36.19 5.34
969 1415 4.456662 TGGGGTACATACAACAAAAGGT 57.543 40.909 0.00 0.00 0.00 3.50
982 1428 5.522097 ACAACAAAAGGTTTTTATTCCTGCG 59.478 36.000 0.00 0.00 37.72 5.18
1024 1471 1.615814 CTCGGGGAGAGGGAGAGAA 59.384 63.158 0.00 0.00 43.20 2.87
1027 1474 1.764454 GGGGAGAGGGAGAGAAGGC 60.764 68.421 0.00 0.00 0.00 4.35
1028 1475 2.131067 GGGAGAGGGAGAGAAGGCG 61.131 68.421 0.00 0.00 0.00 5.52
1029 1476 2.131067 GGAGAGGGAGAGAAGGCGG 61.131 68.421 0.00 0.00 0.00 6.13
1260 1738 2.268076 CCGGCTGGGTTTTGAGGTG 61.268 63.158 2.57 0.00 0.00 4.00
1286 1764 4.041762 GGTTCATCCACCCGCCCA 62.042 66.667 0.00 0.00 35.97 5.36
1308 1786 2.897350 CCTCCGCGATTTCTGGGC 60.897 66.667 8.23 0.00 0.00 5.36
1337 1826 1.270041 CCTAGATCCGCCTGAAGAAGC 60.270 57.143 0.00 0.00 0.00 3.86
1338 1827 0.753262 TAGATCCGCCTGAAGAAGCC 59.247 55.000 0.00 0.00 0.00 4.35
1339 1828 1.524849 GATCCGCCTGAAGAAGCCC 60.525 63.158 0.00 0.00 0.00 5.19
1340 1829 1.977293 GATCCGCCTGAAGAAGCCCT 61.977 60.000 0.00 0.00 0.00 5.19
1341 1830 1.566298 ATCCGCCTGAAGAAGCCCTT 61.566 55.000 0.00 0.00 37.93 3.95
1342 1831 1.303643 CCGCCTGAAGAAGCCCTTT 60.304 57.895 0.00 0.00 34.68 3.11
1343 1832 1.308783 CCGCCTGAAGAAGCCCTTTC 61.309 60.000 0.00 0.00 34.68 2.62
1725 2264 2.273179 CCGTCGGTGACCAGGAGAA 61.273 63.158 2.08 0.00 0.00 2.87
1740 2279 3.997021 CAGGAGAATAAACTCACAACGCT 59.003 43.478 0.00 0.00 38.51 5.07
1772 2311 2.914097 AGGCCAAACTGCACCAGC 60.914 61.111 5.01 0.00 42.57 4.85
1858 2397 1.515521 CTGGAAAGAAAAGCGGCGGT 61.516 55.000 5.44 5.44 0.00 5.68
1862 2401 4.947147 AGAAAAGCGGCGGTGGCA 62.947 61.111 14.17 0.00 42.47 4.92
1936 2475 2.260639 AGGAGGAGGAGAATGCTGAA 57.739 50.000 0.00 0.00 36.27 3.02
2025 2564 2.356125 GGGCTAAGGTGCAGATTCAGAA 60.356 50.000 0.00 0.00 34.04 3.02
2093 2632 2.211250 AGACAAGATGCTGGCAATGT 57.789 45.000 0.00 5.65 0.00 2.71
2109 2648 3.057033 GCAATGTTGGTTGAAGATGAGCT 60.057 43.478 0.00 0.00 0.00 4.09
2194 2733 4.250464 TGAAAACCGTCACCTATGATGAC 58.750 43.478 0.00 0.00 43.58 3.06
2271 2810 5.828747 TGTGAGTTATTAGCCTAACTAGCG 58.171 41.667 4.46 0.00 41.00 4.26
2273 2812 4.236147 GAGTTATTAGCCTAACTAGCGCC 58.764 47.826 2.29 0.00 41.00 6.53
2274 2813 3.896272 AGTTATTAGCCTAACTAGCGCCT 59.104 43.478 2.29 0.00 39.56 5.52
2296 2835 2.814336 GGGGCTCTTGTTTTCTGTACTG 59.186 50.000 0.00 0.00 0.00 2.74
2297 2836 3.477530 GGGCTCTTGTTTTCTGTACTGT 58.522 45.455 0.00 0.00 0.00 3.55
2299 2838 5.061179 GGGCTCTTGTTTTCTGTACTGTTA 58.939 41.667 0.00 0.00 0.00 2.41
2300 2839 5.705905 GGGCTCTTGTTTTCTGTACTGTTAT 59.294 40.000 0.00 0.00 0.00 1.89
2301 2840 6.128254 GGGCTCTTGTTTTCTGTACTGTTATC 60.128 42.308 0.00 0.00 0.00 1.75
2302 2841 6.426937 GGCTCTTGTTTTCTGTACTGTTATCA 59.573 38.462 0.00 0.00 0.00 2.15
2307 2847 9.385902 CTTGTTTTCTGTACTGTTATCATGTTG 57.614 33.333 0.00 0.00 0.00 3.33
2322 2862 1.571955 TGTTGCTCTGCCTCCTGATA 58.428 50.000 0.00 0.00 0.00 2.15
2338 2878 7.420800 CCTCCTGATATTACATTCTGTTTTGC 58.579 38.462 0.00 0.00 0.00 3.68
2373 2913 2.356125 GCTGATCAGGAAGGGTTTGCTA 60.356 50.000 23.89 0.00 32.70 3.49
2428 2968 1.248486 GGTTGAAAGCCCTGGAACTC 58.752 55.000 0.00 0.00 0.00 3.01
2571 3111 1.646189 CGGAGTTCTTGCCTAAGCTC 58.354 55.000 0.00 0.00 40.80 4.09
2794 3336 8.667987 TTTTTGCTTTAGTGTTATTCTATGCG 57.332 30.769 0.00 0.00 0.00 4.73
2870 3412 5.481824 ACCTCAGTGAACTTATCATGTCTGA 59.518 40.000 0.00 0.00 40.97 3.27
2897 3439 2.014857 CAGTTGCAGATGAGGATGTGG 58.985 52.381 0.00 0.00 0.00 4.17
2898 3440 1.064906 AGTTGCAGATGAGGATGTGGG 60.065 52.381 0.00 0.00 0.00 4.61
2899 3441 1.065199 GTTGCAGATGAGGATGTGGGA 60.065 52.381 0.00 0.00 0.00 4.37
2900 3442 0.835276 TGCAGATGAGGATGTGGGAG 59.165 55.000 0.00 0.00 0.00 4.30
2901 3443 1.126488 GCAGATGAGGATGTGGGAGA 58.874 55.000 0.00 0.00 0.00 3.71
2902 3444 1.698532 GCAGATGAGGATGTGGGAGAT 59.301 52.381 0.00 0.00 0.00 2.75
2903 3445 2.550423 GCAGATGAGGATGTGGGAGATG 60.550 54.545 0.00 0.00 0.00 2.90
2904 3446 1.698532 AGATGAGGATGTGGGAGATGC 59.301 52.381 0.00 0.00 0.00 3.91
2905 3447 1.419012 GATGAGGATGTGGGAGATGCA 59.581 52.381 0.00 0.00 0.00 3.96
2906 3448 0.835276 TGAGGATGTGGGAGATGCAG 59.165 55.000 0.00 0.00 0.00 4.41
2907 3449 0.534652 GAGGATGTGGGAGATGCAGC 60.535 60.000 0.00 0.00 0.00 5.25
2908 3450 0.987081 AGGATGTGGGAGATGCAGCT 60.987 55.000 2.90 2.90 0.00 4.24
2909 3451 0.818445 GGATGTGGGAGATGCAGCTG 60.818 60.000 10.40 10.11 0.00 4.24
2910 3452 1.445716 GATGTGGGAGATGCAGCTGC 61.446 60.000 31.89 31.89 42.50 5.25
2925 3467 3.696782 CTGCATCAGCTTCAGTTGC 57.303 52.632 0.00 0.00 42.74 4.17
2926 3468 0.879090 CTGCATCAGCTTCAGTTGCA 59.121 50.000 7.73 7.73 42.74 4.08
2927 3469 0.879090 TGCATCAGCTTCAGTTGCAG 59.121 50.000 4.61 0.00 42.74 4.41
2928 3470 1.162698 GCATCAGCTTCAGTTGCAGA 58.837 50.000 0.00 0.00 37.91 4.26
2929 3471 1.743958 GCATCAGCTTCAGTTGCAGAT 59.256 47.619 0.00 0.00 37.18 2.90
2930 3472 3.406728 CATCAGCTTCAGTTGCAGATG 57.593 47.619 6.69 6.69 43.92 2.90
2931 3473 2.845363 TCAGCTTCAGTTGCAGATGA 57.155 45.000 0.00 0.00 31.80 2.92
2932 3474 2.696506 TCAGCTTCAGTTGCAGATGAG 58.303 47.619 0.00 1.04 29.47 2.90
2933 3475 1.738350 CAGCTTCAGTTGCAGATGAGG 59.262 52.381 7.68 7.68 26.14 3.86
2934 3476 1.627329 AGCTTCAGTTGCAGATGAGGA 59.373 47.619 14.14 0.00 0.00 3.71
2935 3477 2.239150 AGCTTCAGTTGCAGATGAGGAT 59.761 45.455 14.14 6.86 0.00 3.24
2936 3478 2.355132 GCTTCAGTTGCAGATGAGGATG 59.645 50.000 14.14 4.39 0.00 3.51
2937 3479 3.607741 CTTCAGTTGCAGATGAGGATGT 58.392 45.455 6.53 0.00 0.00 3.06
2938 3480 2.981898 TCAGTTGCAGATGAGGATGTG 58.018 47.619 0.00 0.00 0.00 3.21
2950 3492 0.987081 AGGATGTGGGAGATGCAGCT 60.987 55.000 2.90 2.90 0.00 4.24
3412 3954 1.372997 ACGTACGAAGCCTGCACAG 60.373 57.895 24.41 0.00 0.00 3.66
3925 4469 3.781212 GCAACGTGCTACTTATCGC 57.219 52.632 0.00 0.00 40.96 4.58
4462 5006 4.342951 GCACCTACCACCTTTTAACCTTTT 59.657 41.667 0.00 0.00 0.00 2.27
4473 5017 8.925700 CACCTTTTAACCTTTTTAGATGCATTC 58.074 33.333 0.00 0.00 0.00 2.67
4474 5018 8.094548 ACCTTTTAACCTTTTTAGATGCATTCC 58.905 33.333 0.00 0.00 0.00 3.01
4525 5069 7.781056 TCATTATCTTACCTTTTGGATTTGGC 58.219 34.615 0.00 0.00 44.07 4.52
5357 5914 0.393537 CCACATGGACAGGAAGAGCC 60.394 60.000 0.00 0.00 37.39 4.70
5462 6022 0.179009 AAGGTTCAAGCAGCAGCAGA 60.179 50.000 3.17 0.00 45.49 4.26
5495 6058 2.731571 GGTGGGCGCTCTACATGGA 61.732 63.158 9.62 0.00 0.00 3.41
5631 6194 4.421479 CGACAGAGAACGGGCGCT 62.421 66.667 7.64 0.00 35.84 5.92
5648 6211 2.095053 GCGCTCATCAAACTCTTCTTCC 59.905 50.000 0.00 0.00 0.00 3.46
5710 6273 2.916111 GTTGTGCACCTTCATACAACG 58.084 47.619 15.69 0.00 42.08 4.10
5816 6379 3.540314 CTGCTCAAGGAGATAGCAACT 57.460 47.619 0.00 0.00 45.04 3.16
5858 6421 1.101049 CAACGTGGGTGCTGAAACCT 61.101 55.000 0.00 0.00 40.35 3.50
5910 6474 5.419239 TGGGCTCAAAATTTTGATTAGGG 57.581 39.130 28.86 19.39 45.26 3.53
6027 6599 5.885230 TTTTTGCATGGTAGAGATGACAG 57.115 39.130 0.00 0.00 0.00 3.51
6054 6627 3.164268 TGTTAGTTAGGTGGCGGTTCTA 58.836 45.455 0.00 0.00 0.00 2.10
6232 6811 5.670792 ATGGGTCGTTCTGTTTCTGTATA 57.329 39.130 0.00 0.00 0.00 1.47
6233 6812 5.670792 TGGGTCGTTCTGTTTCTGTATAT 57.329 39.130 0.00 0.00 0.00 0.86
6235 6814 5.186215 TGGGTCGTTCTGTTTCTGTATATGA 59.814 40.000 0.00 0.00 0.00 2.15
6239 6818 4.317418 CGTTCTGTTTCTGTATATGAGCGC 60.317 45.833 0.00 0.00 0.00 5.92
6240 6819 3.372060 TCTGTTTCTGTATATGAGCGCG 58.628 45.455 0.00 0.00 0.00 6.86
6250 6830 0.735978 TATGAGCGCGGTGTCACTTG 60.736 55.000 18.92 0.00 0.00 3.16
6259 6839 1.195448 CGGTGTCACTTGTCTTGCATC 59.805 52.381 2.35 0.00 0.00 3.91
6262 6842 3.433615 GGTGTCACTTGTCTTGCATCTAC 59.566 47.826 2.35 0.00 0.00 2.59
6288 6868 9.284594 CGGTGGTTTCAAATATACTTTTATGTG 57.715 33.333 0.00 0.00 0.00 3.21
6366 6946 3.959943 AGCAAACGGTTGTTGTGAATAC 58.040 40.909 15.84 0.00 38.62 1.89
6385 6965 5.891810 ATACTTATTTTCGCGCTCTCTTC 57.108 39.130 5.56 0.00 0.00 2.87
6470 7054 4.566004 TCTGGAAGACGATGTCGATTTTT 58.434 39.130 9.67 0.00 38.67 1.94
6550 7134 4.155709 TGAATTCTGGTTGGTGGCAAATA 58.844 39.130 7.05 0.00 0.00 1.40
6565 7149 7.386299 TGGTGGCAAATAATTGTTGTGAATAAC 59.614 33.333 0.00 0.00 38.85 1.89
6581 7165 2.115348 TAACTATTTCCGCGCTCTCG 57.885 50.000 5.56 0.00 39.07 4.04
6592 7176 2.184579 GCTCTCGTTTCCCCCTCG 59.815 66.667 0.00 0.00 0.00 4.63
6681 7265 8.999431 ACGATGTACATTTTGAGTTGAAACTAT 58.001 29.630 10.30 0.00 39.88 2.12
6694 7278 9.349713 TGAGTTGAAACTATATGGTTCTTGTTT 57.650 29.630 4.79 0.00 42.63 2.83
6723 7307 9.696572 AAAGTAATACTCTGGTGTACTATCTCA 57.303 33.333 0.00 0.00 31.67 3.27
6726 7310 9.509956 GTAATACTCTGGTGTACTATCTCAGAT 57.490 37.037 0.00 0.00 34.50 2.90
6729 7313 7.341445 ACTCTGGTGTACTATCTCAGATTTC 57.659 40.000 0.00 0.00 34.50 2.17
6730 7314 7.122715 ACTCTGGTGTACTATCTCAGATTTCT 58.877 38.462 0.00 0.00 34.50 2.52
6731 7315 7.068103 ACTCTGGTGTACTATCTCAGATTTCTG 59.932 40.741 0.00 0.97 45.08 3.02
6733 7317 6.194967 TGGTGTACTATCTCAGATTTCTGGA 58.805 40.000 7.68 4.82 43.91 3.86
6734 7318 6.667848 TGGTGTACTATCTCAGATTTCTGGAA 59.332 38.462 7.68 0.00 43.91 3.53
6735 7319 7.147828 TGGTGTACTATCTCAGATTTCTGGAAG 60.148 40.741 7.68 0.00 43.91 3.46
6736 7320 7.068839 GGTGTACTATCTCAGATTTCTGGAAGA 59.931 40.741 7.68 4.86 44.68 2.87
6824 7413 3.393800 GCAGAGCTACTTGTTCAGTCAA 58.606 45.455 0.00 0.00 36.88 3.18
6861 7472 5.064452 GCAGAACTCTAATTGACATCCACAG 59.936 44.000 0.00 0.00 0.00 3.66
6870 7481 1.680735 TGACATCCACAGGCAAAACAC 59.319 47.619 0.00 0.00 0.00 3.32
6874 7485 2.363306 TCCACAGGCAAAACACTGAT 57.637 45.000 0.00 0.00 38.09 2.90
6899 7510 4.319477 CGAGAAGCGAAACTTTCATTCCAA 60.319 41.667 10.67 0.00 44.57 3.53
6902 7513 6.337356 AGAAGCGAAACTTTCATTCCAAAAA 58.663 32.000 10.67 0.00 39.29 1.94
7039 7650 4.085357 TGTGAGGATACAAACTGCAGTT 57.915 40.909 26.36 26.36 40.50 3.16
7137 7865 4.035208 AGACTGTAAAGCAAACGTTTCTGG 59.965 41.667 11.37 1.14 0.00 3.86
7139 7867 2.423892 TGTAAAGCAAACGTTTCTGGCA 59.576 40.909 19.96 12.68 0.00 4.92
7145 7873 1.164041 AAACGTTTCTGGCACCCTCG 61.164 55.000 7.96 0.00 0.00 4.63
7218 7953 9.809096 AGATGTACAATGTACTCTAGTTGAATG 57.191 33.333 22.22 0.00 0.00 2.67
7219 7954 9.803315 GATGTACAATGTACTCTAGTTGAATGA 57.197 33.333 22.22 0.12 0.00 2.57
7243 7978 9.374838 TGATAAGTAAAATTTTCCTACCGAGAC 57.625 33.333 6.72 0.00 0.00 3.36
7244 7979 8.728337 ATAAGTAAAATTTTCCTACCGAGACC 57.272 34.615 6.72 0.00 0.00 3.85
7245 7980 5.494724 AGTAAAATTTTCCTACCGAGACCC 58.505 41.667 6.72 0.00 0.00 4.46
7246 7981 4.376225 AAAATTTTCCTACCGAGACCCA 57.624 40.909 0.00 0.00 0.00 4.51
7247 7982 4.586306 AAATTTTCCTACCGAGACCCAT 57.414 40.909 0.00 0.00 0.00 4.00
7248 7983 4.586306 AATTTTCCTACCGAGACCCATT 57.414 40.909 0.00 0.00 0.00 3.16
7249 7984 3.343941 TTTTCCTACCGAGACCCATTG 57.656 47.619 0.00 0.00 0.00 2.82
7250 7985 0.539986 TTCCTACCGAGACCCATTGC 59.460 55.000 0.00 0.00 0.00 3.56
7251 7986 0.616395 TCCTACCGAGACCCATTGCA 60.616 55.000 0.00 0.00 0.00 4.08
7252 7987 0.251916 CCTACCGAGACCCATTGCAA 59.748 55.000 0.00 0.00 0.00 4.08
7253 7988 1.339631 CCTACCGAGACCCATTGCAAA 60.340 52.381 1.71 0.00 0.00 3.68
7254 7989 2.432444 CTACCGAGACCCATTGCAAAA 58.568 47.619 1.71 0.00 0.00 2.44
7255 7990 1.698506 ACCGAGACCCATTGCAAAAA 58.301 45.000 1.71 0.00 0.00 1.94
7256 7991 1.339929 ACCGAGACCCATTGCAAAAAC 59.660 47.619 1.71 0.00 0.00 2.43
7257 7992 1.339610 CCGAGACCCATTGCAAAAACA 59.660 47.619 1.71 0.00 0.00 2.83
7258 7993 2.223923 CCGAGACCCATTGCAAAAACAA 60.224 45.455 1.71 0.00 0.00 2.83
7259 7994 2.794350 CGAGACCCATTGCAAAAACAAC 59.206 45.455 1.71 0.00 31.03 3.32
7260 7995 3.736433 CGAGACCCATTGCAAAAACAACA 60.736 43.478 1.71 0.00 31.03 3.33
7261 7996 4.187694 GAGACCCATTGCAAAAACAACAA 58.812 39.130 1.71 0.00 31.03 2.83
7262 7997 4.583871 AGACCCATTGCAAAAACAACAAA 58.416 34.783 1.71 0.00 31.03 2.83
7263 7998 4.394610 AGACCCATTGCAAAAACAACAAAC 59.605 37.500 1.71 0.00 31.03 2.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 6.525578 TTTGTTGTATGTACCACCACAAAA 57.474 33.333 17.53 5.27 33.04 2.44
5 6 5.067936 CCTTTTGTTGTATGTACCACCACAA 59.932 40.000 9.13 9.13 30.84 3.33
6 7 4.580995 CCTTTTGTTGTATGTACCACCACA 59.419 41.667 0.00 0.00 0.00 4.17
7 8 4.581409 ACCTTTTGTTGTATGTACCACCAC 59.419 41.667 0.00 0.00 0.00 4.16
8 9 4.794334 ACCTTTTGTTGTATGTACCACCA 58.206 39.130 0.00 0.00 0.00 4.17
9 10 5.777850 AACCTTTTGTTGTATGTACCACC 57.222 39.130 0.00 0.00 35.31 4.61
10 11 9.752961 AATAAAACCTTTTGTTGTATGTACCAC 57.247 29.630 0.00 0.00 36.53 4.16
11 12 9.968870 GAATAAAACCTTTTGTTGTATGTACCA 57.031 29.630 0.00 0.00 36.53 3.25
12 13 9.414295 GGAATAAAACCTTTTGTTGTATGTACC 57.586 33.333 0.00 0.00 36.53 3.34
15 16 7.655732 GCAGGAATAAAACCTTTTGTTGTATGT 59.344 33.333 0.00 0.00 36.53 2.29
16 17 7.148820 CGCAGGAATAAAACCTTTTGTTGTATG 60.149 37.037 0.00 0.00 36.53 2.39
17 18 6.866248 CGCAGGAATAAAACCTTTTGTTGTAT 59.134 34.615 0.00 0.00 38.74 2.29
18 19 6.210078 CGCAGGAATAAAACCTTTTGTTGTA 58.790 36.000 0.00 0.00 37.23 2.41
19 20 5.047188 CGCAGGAATAAAACCTTTTGTTGT 58.953 37.500 0.00 0.00 37.23 3.32
20 21 4.084589 GCGCAGGAATAAAACCTTTTGTTG 60.085 41.667 0.30 0.00 37.23 3.33
21 22 4.055360 GCGCAGGAATAAAACCTTTTGTT 58.945 39.130 0.30 0.00 39.43 2.83
22 23 3.554129 GGCGCAGGAATAAAACCTTTTGT 60.554 43.478 10.83 0.00 35.35 2.83
23 24 2.993220 GGCGCAGGAATAAAACCTTTTG 59.007 45.455 10.83 0.00 35.35 2.44
24 25 2.630580 TGGCGCAGGAATAAAACCTTTT 59.369 40.909 10.83 0.00 35.35 2.27
25 26 2.243810 TGGCGCAGGAATAAAACCTTT 58.756 42.857 10.83 0.00 35.35 3.11
26 27 1.917872 TGGCGCAGGAATAAAACCTT 58.082 45.000 10.83 0.00 35.35 3.50
27 28 1.917872 TTGGCGCAGGAATAAAACCT 58.082 45.000 10.83 0.00 38.40 3.50
28 29 2.606108 CTTTGGCGCAGGAATAAAACC 58.394 47.619 10.83 0.00 0.00 3.27
29 30 1.992667 GCTTTGGCGCAGGAATAAAAC 59.007 47.619 10.83 0.00 0.00 2.43
30 31 1.067213 GGCTTTGGCGCAGGAATAAAA 60.067 47.619 10.83 0.00 39.81 1.52
31 32 0.530288 GGCTTTGGCGCAGGAATAAA 59.470 50.000 10.83 0.00 39.81 1.40
32 33 1.653094 CGGCTTTGGCGCAGGAATAA 61.653 55.000 10.83 0.00 45.68 1.40
33 34 2.112198 CGGCTTTGGCGCAGGAATA 61.112 57.895 10.83 0.00 45.68 1.75
34 35 3.443045 CGGCTTTGGCGCAGGAAT 61.443 61.111 10.83 0.00 45.68 3.01
42 43 1.308069 TTCATCAGCTCGGCTTTGGC 61.308 55.000 0.00 0.00 36.40 4.52
43 44 0.449388 GTTCATCAGCTCGGCTTTGG 59.551 55.000 0.00 0.00 36.40 3.28
44 45 0.449388 GGTTCATCAGCTCGGCTTTG 59.551 55.000 0.00 0.00 36.40 2.77
45 46 1.021390 CGGTTCATCAGCTCGGCTTT 61.021 55.000 0.00 0.00 36.40 3.51
46 47 1.448540 CGGTTCATCAGCTCGGCTT 60.449 57.895 0.00 0.00 36.40 4.35
47 48 2.185350 CGGTTCATCAGCTCGGCT 59.815 61.111 0.00 0.00 40.77 5.52
48 49 2.167861 GTCGGTTCATCAGCTCGGC 61.168 63.158 0.00 0.00 0.00 5.54
49 50 0.108615 AAGTCGGTTCATCAGCTCGG 60.109 55.000 0.00 0.00 0.00 4.63
50 51 0.994995 CAAGTCGGTTCATCAGCTCG 59.005 55.000 0.00 0.00 0.00 5.03
51 52 1.363744 CCAAGTCGGTTCATCAGCTC 58.636 55.000 0.00 0.00 0.00 4.09
52 53 0.036010 CCCAAGTCGGTTCATCAGCT 60.036 55.000 0.00 0.00 0.00 4.24
53 54 1.026718 CCCCAAGTCGGTTCATCAGC 61.027 60.000 0.00 0.00 0.00 4.26
54 55 0.613260 TCCCCAAGTCGGTTCATCAG 59.387 55.000 0.00 0.00 0.00 2.90
55 56 0.613260 CTCCCCAAGTCGGTTCATCA 59.387 55.000 0.00 0.00 0.00 3.07
56 57 0.902531 TCTCCCCAAGTCGGTTCATC 59.097 55.000 0.00 0.00 0.00 2.92
57 58 0.905357 CTCTCCCCAAGTCGGTTCAT 59.095 55.000 0.00 0.00 0.00 2.57
58 59 1.192146 CCTCTCCCCAAGTCGGTTCA 61.192 60.000 0.00 0.00 0.00 3.18
59 60 1.597461 CCTCTCCCCAAGTCGGTTC 59.403 63.158 0.00 0.00 0.00 3.62
60 61 1.918800 CCCTCTCCCCAAGTCGGTT 60.919 63.158 0.00 0.00 0.00 4.44
61 62 2.284699 CCCTCTCCCCAAGTCGGT 60.285 66.667 0.00 0.00 0.00 4.69
62 63 2.038975 TCCCTCTCCCCAAGTCGG 59.961 66.667 0.00 0.00 0.00 4.79
63 64 1.000486 TCTCCCTCTCCCCAAGTCG 60.000 63.158 0.00 0.00 0.00 4.18
64 65 0.336737 TCTCTCCCTCTCCCCAAGTC 59.663 60.000 0.00 0.00 0.00 3.01
65 66 0.338120 CTCTCTCCCTCTCCCCAAGT 59.662 60.000 0.00 0.00 0.00 3.16
66 67 0.633921 TCTCTCTCCCTCTCCCCAAG 59.366 60.000 0.00 0.00 0.00 3.61
67 68 0.633921 CTCTCTCTCCCTCTCCCCAA 59.366 60.000 0.00 0.00 0.00 4.12
68 69 0.253868 TCTCTCTCTCCCTCTCCCCA 60.254 60.000 0.00 0.00 0.00 4.96
69 70 0.478507 CTCTCTCTCTCCCTCTCCCC 59.521 65.000 0.00 0.00 0.00 4.81
70 71 0.478507 CCTCTCTCTCTCCCTCTCCC 59.521 65.000 0.00 0.00 0.00 4.30
71 72 0.478507 CCCTCTCTCTCTCCCTCTCC 59.521 65.000 0.00 0.00 0.00 3.71
72 73 1.143073 GACCCTCTCTCTCTCCCTCTC 59.857 61.905 0.00 0.00 0.00 3.20
73 74 1.222567 GACCCTCTCTCTCTCCCTCT 58.777 60.000 0.00 0.00 0.00 3.69
74 75 1.222567 AGACCCTCTCTCTCTCCCTC 58.777 60.000 0.00 0.00 0.00 4.30
75 76 1.569072 GAAGACCCTCTCTCTCTCCCT 59.431 57.143 0.00 0.00 0.00 4.20
76 77 1.569072 AGAAGACCCTCTCTCTCTCCC 59.431 57.143 0.00 0.00 0.00 4.30
77 78 3.053619 AGAAGAAGACCCTCTCTCTCTCC 60.054 52.174 0.00 0.00 0.00 3.71
78 79 4.236527 AGAAGAAGACCCTCTCTCTCTC 57.763 50.000 0.00 0.00 0.00 3.20
79 80 4.569865 GGAAGAAGAAGACCCTCTCTCTCT 60.570 50.000 0.00 0.00 0.00 3.10
80 81 3.699538 GGAAGAAGAAGACCCTCTCTCTC 59.300 52.174 0.00 0.00 0.00 3.20
81 82 3.336694 AGGAAGAAGAAGACCCTCTCTCT 59.663 47.826 0.00 0.00 0.00 3.10
82 83 3.699538 GAGGAAGAAGAAGACCCTCTCTC 59.300 52.174 0.00 0.00 40.07 3.20
83 84 3.565670 GGAGGAAGAAGAAGACCCTCTCT 60.566 52.174 0.00 0.00 42.21 3.10
84 85 2.764010 GGAGGAAGAAGAAGACCCTCTC 59.236 54.545 0.00 0.00 42.21 3.20
85 86 2.561069 GGGAGGAAGAAGAAGACCCTCT 60.561 54.545 0.00 0.00 42.21 3.69
86 87 1.834896 GGGAGGAAGAAGAAGACCCTC 59.165 57.143 0.00 0.00 41.92 4.30
87 88 1.556002 GGGGAGGAAGAAGAAGACCCT 60.556 57.143 0.00 0.00 36.47 4.34
88 89 0.913205 GGGGAGGAAGAAGAAGACCC 59.087 60.000 0.00 0.00 35.60 4.46
89 90 1.834896 GAGGGGAGGAAGAAGAAGACC 59.165 57.143 0.00 0.00 0.00 3.85
90 91 1.834896 GGAGGGGAGGAAGAAGAAGAC 59.165 57.143 0.00 0.00 0.00 3.01
91 92 1.619977 CGGAGGGGAGGAAGAAGAAGA 60.620 57.143 0.00 0.00 0.00 2.87
92 93 0.827368 CGGAGGGGAGGAAGAAGAAG 59.173 60.000 0.00 0.00 0.00 2.85
93 94 0.412244 TCGGAGGGGAGGAAGAAGAA 59.588 55.000 0.00 0.00 0.00 2.52
94 95 0.324460 GTCGGAGGGGAGGAAGAAGA 60.324 60.000 0.00 0.00 0.00 2.87
95 96 0.324830 AGTCGGAGGGGAGGAAGAAG 60.325 60.000 0.00 0.00 0.00 2.85
96 97 0.324460 GAGTCGGAGGGGAGGAAGAA 60.324 60.000 0.00 0.00 0.00 2.52
97 98 1.306970 GAGTCGGAGGGGAGGAAGA 59.693 63.158 0.00 0.00 0.00 2.87
98 99 1.758906 GGAGTCGGAGGGGAGGAAG 60.759 68.421 0.00 0.00 0.00 3.46
99 100 2.363361 GGAGTCGGAGGGGAGGAA 59.637 66.667 0.00 0.00 0.00 3.36
100 101 4.124943 CGGAGTCGGAGGGGAGGA 62.125 72.222 0.00 0.00 0.00 3.71
101 102 4.124943 TCGGAGTCGGAGGGGAGG 62.125 72.222 0.00 0.00 36.95 4.30
102 103 2.829458 GTCGGAGTCGGAGGGGAG 60.829 72.222 0.00 0.00 36.95 4.30
103 104 3.336568 AGTCGGAGTCGGAGGGGA 61.337 66.667 0.00 0.00 36.95 4.81
104 105 2.829458 GAGTCGGAGTCGGAGGGG 60.829 72.222 0.00 0.00 36.95 4.79
105 106 2.829458 GGAGTCGGAGTCGGAGGG 60.829 72.222 6.74 0.00 36.95 4.30
106 107 3.203412 CGGAGTCGGAGTCGGAGG 61.203 72.222 13.45 0.00 36.95 4.30
107 108 3.878519 GCGGAGTCGGAGTCGGAG 61.879 72.222 20.64 9.92 36.95 4.63
115 116 3.638592 AATTTGGGGGCGGAGTCGG 62.639 63.158 0.00 0.00 36.79 4.79
116 117 2.045340 AATTTGGGGGCGGAGTCG 60.045 61.111 0.00 0.00 39.81 4.18
117 118 2.112815 CGAATTTGGGGGCGGAGTC 61.113 63.158 0.00 0.00 0.00 3.36
118 119 2.045340 CGAATTTGGGGGCGGAGT 60.045 61.111 0.00 0.00 0.00 3.85
119 120 2.828549 CCGAATTTGGGGGCGGAG 60.829 66.667 3.45 0.00 46.29 4.63
124 125 0.902516 TTTCAGGCCGAATTTGGGGG 60.903 55.000 13.87 0.00 32.32 5.40
125 126 0.246360 GTTTCAGGCCGAATTTGGGG 59.754 55.000 13.87 0.42 32.32 4.96
126 127 0.109319 CGTTTCAGGCCGAATTTGGG 60.109 55.000 13.87 3.02 32.32 4.12
127 128 0.596082 ACGTTTCAGGCCGAATTTGG 59.404 50.000 7.44 7.44 32.32 3.28
128 129 2.050691 CAACGTTTCAGGCCGAATTTG 58.949 47.619 0.00 10.02 32.32 2.32
129 130 1.950909 TCAACGTTTCAGGCCGAATTT 59.049 42.857 0.00 3.34 32.32 1.82
130 131 1.600023 TCAACGTTTCAGGCCGAATT 58.400 45.000 0.00 1.17 32.32 2.17
131 132 1.600023 TTCAACGTTTCAGGCCGAAT 58.400 45.000 0.00 0.00 32.32 3.34
132 133 1.265635 CATTCAACGTTTCAGGCCGAA 59.734 47.619 0.00 0.83 0.00 4.30
133 134 0.871722 CATTCAACGTTTCAGGCCGA 59.128 50.000 0.00 0.00 0.00 5.54
134 135 0.729140 GCATTCAACGTTTCAGGCCG 60.729 55.000 0.00 0.00 0.00 6.13
135 136 0.729140 CGCATTCAACGTTTCAGGCC 60.729 55.000 0.00 0.00 0.00 5.19
136 137 0.040425 ACGCATTCAACGTTTCAGGC 60.040 50.000 0.00 0.00 41.93 4.85
137 138 1.262950 TCACGCATTCAACGTTTCAGG 59.737 47.619 0.00 0.00 42.96 3.86
138 139 2.220824 TCTCACGCATTCAACGTTTCAG 59.779 45.455 0.00 0.00 42.96 3.02
139 140 2.205911 TCTCACGCATTCAACGTTTCA 58.794 42.857 0.00 0.00 42.96 2.69
140 141 2.411547 CCTCTCACGCATTCAACGTTTC 60.412 50.000 0.00 0.00 42.96 2.78
141 142 1.531149 CCTCTCACGCATTCAACGTTT 59.469 47.619 0.00 0.00 42.96 3.60
142 143 1.148310 CCTCTCACGCATTCAACGTT 58.852 50.000 0.00 0.00 42.96 3.99
143 144 0.670546 CCCTCTCACGCATTCAACGT 60.671 55.000 0.00 0.00 46.42 3.99
144 145 1.970917 GCCCTCTCACGCATTCAACG 61.971 60.000 0.00 0.00 0.00 4.10
145 146 0.674895 AGCCCTCTCACGCATTCAAC 60.675 55.000 0.00 0.00 0.00 3.18
146 147 0.674581 CAGCCCTCTCACGCATTCAA 60.675 55.000 0.00 0.00 0.00 2.69
147 148 1.078918 CAGCCCTCTCACGCATTCA 60.079 57.895 0.00 0.00 0.00 2.57
148 149 1.817099 CCAGCCCTCTCACGCATTC 60.817 63.158 0.00 0.00 0.00 2.67
149 150 2.270205 CCAGCCCTCTCACGCATT 59.730 61.111 0.00 0.00 0.00 3.56
150 151 3.790437 CCCAGCCCTCTCACGCAT 61.790 66.667 0.00 0.00 0.00 4.73
152 153 3.672295 CTTCCCAGCCCTCTCACGC 62.672 68.421 0.00 0.00 0.00 5.34
153 154 1.954362 CTCTTCCCAGCCCTCTCACG 61.954 65.000 0.00 0.00 0.00 4.35
154 155 1.621672 CCTCTTCCCAGCCCTCTCAC 61.622 65.000 0.00 0.00 0.00 3.51
155 156 1.306482 CCTCTTCCCAGCCCTCTCA 60.306 63.158 0.00 0.00 0.00 3.27
156 157 2.741055 GCCTCTTCCCAGCCCTCTC 61.741 68.421 0.00 0.00 0.00 3.20
157 158 2.690510 GCCTCTTCCCAGCCCTCT 60.691 66.667 0.00 0.00 0.00 3.69
158 159 2.690510 AGCCTCTTCCCAGCCCTC 60.691 66.667 0.00 0.00 0.00 4.30
159 160 2.690510 GAGCCTCTTCCCAGCCCT 60.691 66.667 0.00 0.00 0.00 5.19
160 161 3.011517 TGAGCCTCTTCCCAGCCC 61.012 66.667 0.00 0.00 0.00 5.19
161 162 1.846712 AACTGAGCCTCTTCCCAGCC 61.847 60.000 0.00 0.00 0.00 4.85
162 163 0.037447 AAACTGAGCCTCTTCCCAGC 59.963 55.000 0.00 0.00 0.00 4.85
163 164 2.575805 AAAACTGAGCCTCTTCCCAG 57.424 50.000 0.00 0.00 0.00 4.45
164 165 2.979678 AGTAAAACTGAGCCTCTTCCCA 59.020 45.455 0.00 0.00 0.00 4.37
165 166 3.704800 AGTAAAACTGAGCCTCTTCCC 57.295 47.619 0.00 0.00 0.00 3.97
185 186 9.522804 GTTTGTATTGTTTTGTCATTAAGGACA 57.477 29.630 18.42 18.42 45.54 4.02
186 187 8.687301 CGTTTGTATTGTTTTGTCATTAAGGAC 58.313 33.333 13.22 13.22 38.29 3.85
187 188 8.407064 ACGTTTGTATTGTTTTGTCATTAAGGA 58.593 29.630 0.00 0.00 0.00 3.36
188 189 8.568732 ACGTTTGTATTGTTTTGTCATTAAGG 57.431 30.769 0.00 0.00 0.00 2.69
193 194 9.575783 ACTTTAACGTTTGTATTGTTTTGTCAT 57.424 25.926 5.91 0.00 0.00 3.06
194 195 8.967552 ACTTTAACGTTTGTATTGTTTTGTCA 57.032 26.923 5.91 0.00 0.00 3.58
199 200 9.720667 GACCTAACTTTAACGTTTGTATTGTTT 57.279 29.630 5.91 0.00 0.00 2.83
200 201 9.112725 AGACCTAACTTTAACGTTTGTATTGTT 57.887 29.630 5.91 6.57 0.00 2.83
201 202 8.667076 AGACCTAACTTTAACGTTTGTATTGT 57.333 30.769 5.91 2.13 0.00 2.71
203 204 9.762933 TGTAGACCTAACTTTAACGTTTGTATT 57.237 29.630 5.91 0.00 0.00 1.89
204 205 9.762933 TTGTAGACCTAACTTTAACGTTTGTAT 57.237 29.630 5.91 2.04 0.00 2.29
205 206 9.762933 ATTGTAGACCTAACTTTAACGTTTGTA 57.237 29.630 5.91 0.00 0.00 2.41
206 207 8.667076 ATTGTAGACCTAACTTTAACGTTTGT 57.333 30.769 5.91 0.37 0.00 2.83
209 210 9.208022 GGTAATTGTAGACCTAACTTTAACGTT 57.792 33.333 5.88 5.88 32.58 3.99
210 211 8.367156 TGGTAATTGTAGACCTAACTTTAACGT 58.633 33.333 0.00 0.00 36.62 3.99
211 212 8.761575 TGGTAATTGTAGACCTAACTTTAACG 57.238 34.615 0.00 0.00 36.62 3.18
214 215 9.492973 GTGTTGGTAATTGTAGACCTAACTTTA 57.507 33.333 0.00 0.00 36.62 1.85
215 216 7.172019 CGTGTTGGTAATTGTAGACCTAACTTT 59.828 37.037 0.00 0.00 36.62 2.66
216 217 6.647895 CGTGTTGGTAATTGTAGACCTAACTT 59.352 38.462 0.00 0.00 36.62 2.66
217 218 6.015180 TCGTGTTGGTAATTGTAGACCTAACT 60.015 38.462 0.00 0.00 36.62 2.24
218 219 6.158598 TCGTGTTGGTAATTGTAGACCTAAC 58.841 40.000 0.00 1.72 36.62 2.34
219 220 6.343716 TCGTGTTGGTAATTGTAGACCTAA 57.656 37.500 0.00 0.00 36.62 2.69
229 230 9.997482 GTTAATTGTATGATCGTGTTGGTAATT 57.003 29.630 0.00 0.00 0.00 1.40
263 264 9.986833 AAATAACTTTGCACTGAAAATTCAAAC 57.013 25.926 0.00 0.00 36.64 2.93
291 292 7.255346 GCTTCAAGCTAAAACCCTTTGTACTTA 60.255 37.037 0.71 0.00 38.45 2.24
292 293 6.461092 GCTTCAAGCTAAAACCCTTTGTACTT 60.461 38.462 0.71 0.00 38.45 2.24
294 295 5.220381 GCTTCAAGCTAAAACCCTTTGTAC 58.780 41.667 0.71 0.00 38.45 2.90
295 296 4.890581 TGCTTCAAGCTAAAACCCTTTGTA 59.109 37.500 11.57 0.00 42.97 2.41
296 297 3.704061 TGCTTCAAGCTAAAACCCTTTGT 59.296 39.130 11.57 0.00 42.97 2.83
304 310 3.369546 GCCACTTGCTTCAAGCTAAAA 57.630 42.857 11.57 0.00 44.43 1.52
401 407 9.606631 GTAGAGGATTCATGGCTTATAAATAGG 57.393 37.037 0.00 0.00 0.00 2.57
410 416 7.083062 TGATAATGTAGAGGATTCATGGCTT 57.917 36.000 0.00 0.00 0.00 4.35
412 418 9.453572 TTTATGATAATGTAGAGGATTCATGGC 57.546 33.333 0.00 0.00 0.00 4.40
444 490 0.244994 TTTAACGGCCATTGCGCAAT 59.755 45.000 29.36 29.36 38.85 3.56
448 494 0.644843 GCAATTTAACGGCCATTGCG 59.355 50.000 18.63 0.00 42.41 4.85
496 542 9.685276 TGGGTAGATTTATCCATATGCTAATTG 57.315 33.333 0.00 0.00 35.07 2.32
497 543 9.911788 CTGGGTAGATTTATCCATATGCTAATT 57.088 33.333 0.00 0.00 39.34 1.40
500 546 7.125811 GGTCTGGGTAGATTTATCCATATGCTA 59.874 40.741 0.00 0.00 39.34 3.49
502 548 6.069963 AGGTCTGGGTAGATTTATCCATATGC 60.070 42.308 0.00 0.00 39.34 3.14
503 549 7.180946 TGAGGTCTGGGTAGATTTATCCATATG 59.819 40.741 0.00 0.00 39.34 1.78
504 550 7.256399 TGAGGTCTGGGTAGATTTATCCATAT 58.744 38.462 0.00 0.00 39.34 1.78
505 551 6.630131 TGAGGTCTGGGTAGATTTATCCATA 58.370 40.000 0.00 0.00 39.34 2.74
508 554 5.221742 CCTTGAGGTCTGGGTAGATTTATCC 60.222 48.000 0.00 0.00 34.94 2.59
509 555 5.221742 CCCTTGAGGTCTGGGTAGATTTATC 60.222 48.000 0.00 0.00 36.32 1.75
510 556 4.660771 CCCTTGAGGTCTGGGTAGATTTAT 59.339 45.833 0.00 0.00 36.32 1.40
511 557 4.037927 CCCTTGAGGTCTGGGTAGATTTA 58.962 47.826 0.00 0.00 36.32 1.40
512 558 2.846827 CCCTTGAGGTCTGGGTAGATTT 59.153 50.000 0.00 0.00 36.32 2.17
513 559 2.482494 CCCTTGAGGTCTGGGTAGATT 58.518 52.381 0.00 0.00 36.32 2.40
514 560 1.972207 GCCCTTGAGGTCTGGGTAGAT 60.972 57.143 0.00 0.00 42.77 1.98
515 561 0.617820 GCCCTTGAGGTCTGGGTAGA 60.618 60.000 0.00 0.00 42.77 2.59
516 562 0.909610 TGCCCTTGAGGTCTGGGTAG 60.910 60.000 0.00 0.00 42.77 3.18
517 563 0.253160 ATGCCCTTGAGGTCTGGGTA 60.253 55.000 0.00 0.00 42.77 3.69
518 564 1.142688 AATGCCCTTGAGGTCTGGGT 61.143 55.000 0.00 0.00 42.77 4.51
519 565 0.682209 CAATGCCCTTGAGGTCTGGG 60.682 60.000 0.00 0.00 43.62 4.45
520 566 1.318158 GCAATGCCCTTGAGGTCTGG 61.318 60.000 0.00 0.00 36.97 3.86
527 573 1.533513 TTGCCTGCAATGCCCTTGA 60.534 52.632 1.53 0.00 36.97 3.02
531 577 0.108662 GTTACTTGCCTGCAATGCCC 60.109 55.000 1.53 0.00 35.20 5.36
538 584 2.880963 TTTGGTTGTTACTTGCCTGC 57.119 45.000 0.00 0.00 0.00 4.85
540 586 5.381757 TGTAGATTTGGTTGTTACTTGCCT 58.618 37.500 0.00 0.00 0.00 4.75
542 588 5.240844 ACCTGTAGATTTGGTTGTTACTTGC 59.759 40.000 0.00 0.00 0.00 4.01
563 609 4.497291 TGGTTGAGACAAGTGTAAACCT 57.503 40.909 15.40 0.00 37.18 3.50
565 611 4.095782 TGCTTGGTTGAGACAAGTGTAAAC 59.904 41.667 6.98 0.00 45.38 2.01
570 616 1.002033 GCTGCTTGGTTGAGACAAGTG 60.002 52.381 6.98 2.64 45.38 3.16
572 618 1.602311 AGCTGCTTGGTTGAGACAAG 58.398 50.000 0.00 0.00 46.15 3.16
573 619 2.057137 AAGCTGCTTGGTTGAGACAA 57.943 45.000 15.16 0.00 34.77 3.18
574 620 1.949525 GAAAGCTGCTTGGTTGAGACA 59.050 47.619 16.73 0.00 36.40 3.41
595 641 5.048434 GTGAATTTCTGGCTGTAGAAAAGCT 60.048 40.000 12.77 0.00 46.35 3.74
596 642 5.157067 GTGAATTTCTGGCTGTAGAAAAGC 58.843 41.667 12.77 9.51 46.35 3.51
598 644 4.819630 ACGTGAATTTCTGGCTGTAGAAAA 59.180 37.500 12.77 0.00 46.35 2.29
600 646 3.994392 GACGTGAATTTCTGGCTGTAGAA 59.006 43.478 0.00 0.00 35.02 2.10
601 647 3.006430 TGACGTGAATTTCTGGCTGTAGA 59.994 43.478 0.00 0.00 0.00 2.59
603 649 3.394674 TGACGTGAATTTCTGGCTGTA 57.605 42.857 0.00 0.00 0.00 2.74
604 650 2.254546 TGACGTGAATTTCTGGCTGT 57.745 45.000 0.00 0.00 0.00 4.40
605 651 3.837213 ATTGACGTGAATTTCTGGCTG 57.163 42.857 0.00 0.00 0.00 4.85
607 653 5.222631 AGAAAATTGACGTGAATTTCTGGC 58.777 37.500 22.97 13.90 35.01 4.85
608 654 6.437928 TGAGAAAATTGACGTGAATTTCTGG 58.562 36.000 22.97 0.00 35.01 3.86
609 655 7.061441 CCATGAGAAAATTGACGTGAATTTCTG 59.939 37.037 22.97 15.26 35.01 3.02
610 656 7.086376 CCATGAGAAAATTGACGTGAATTTCT 58.914 34.615 22.97 19.97 35.01 2.52
611 657 6.183360 GCCATGAGAAAATTGACGTGAATTTC 60.183 38.462 22.97 16.51 35.01 2.17
613 659 5.047802 AGCCATGAGAAAATTGACGTGAATT 60.048 36.000 7.19 7.19 0.00 2.17
616 662 3.411446 AGCCATGAGAAAATTGACGTGA 58.589 40.909 0.00 0.00 0.00 4.35
617 663 3.189080 TGAGCCATGAGAAAATTGACGTG 59.811 43.478 0.00 0.00 0.00 4.49
619 665 4.154737 TCTTGAGCCATGAGAAAATTGACG 59.845 41.667 0.00 0.00 0.00 4.35
620 666 5.182760 AGTCTTGAGCCATGAGAAAATTGAC 59.817 40.000 0.00 0.00 0.00 3.18
629 675 1.203287 TCGTGAGTCTTGAGCCATGAG 59.797 52.381 0.00 0.00 0.00 2.90
630 676 1.256812 TCGTGAGTCTTGAGCCATGA 58.743 50.000 0.00 0.00 0.00 3.07
631 677 2.306341 ATCGTGAGTCTTGAGCCATG 57.694 50.000 0.00 0.00 0.00 3.66
632 678 2.223923 GCTATCGTGAGTCTTGAGCCAT 60.224 50.000 0.00 0.00 0.00 4.40
633 679 1.135139 GCTATCGTGAGTCTTGAGCCA 59.865 52.381 0.00 0.00 0.00 4.75
634 680 1.407258 AGCTATCGTGAGTCTTGAGCC 59.593 52.381 0.00 0.00 0.00 4.70
659 705 4.365514 TTGGTTGAGCTGTGGATTCTAA 57.634 40.909 0.00 0.00 0.00 2.10
660 706 4.072131 GTTTGGTTGAGCTGTGGATTCTA 58.928 43.478 0.00 0.00 0.00 2.10
668 714 1.476488 GGTTGTGTTTGGTTGAGCTGT 59.524 47.619 0.00 0.00 0.00 4.40
669 715 1.750778 AGGTTGTGTTTGGTTGAGCTG 59.249 47.619 0.00 0.00 0.00 4.24
687 733 3.370061 CGCTAAGGAGGTTTCGTTAAAGG 59.630 47.826 0.00 0.00 34.35 3.11
695 741 3.055209 AGGTTTCGCTAAGGAGGTTTC 57.945 47.619 0.00 0.00 0.00 2.78
698 744 2.028020 CAGAAGGTTTCGCTAAGGAGGT 60.028 50.000 0.00 0.00 34.02 3.85
700 746 2.622436 CCAGAAGGTTTCGCTAAGGAG 58.378 52.381 0.00 0.00 34.02 3.69
717 825 7.081976 GCACAAACTACCTAAAACATAACCAG 58.918 38.462 0.00 0.00 0.00 4.00
720 828 9.124807 GATTGCACAAACTACCTAAAACATAAC 57.875 33.333 0.00 0.00 0.00 1.89
723 831 7.370383 CAGATTGCACAAACTACCTAAAACAT 58.630 34.615 0.00 0.00 0.00 2.71
724 832 6.238897 CCAGATTGCACAAACTACCTAAAACA 60.239 38.462 0.00 0.00 0.00 2.83
729 837 4.634012 ACCAGATTGCACAAACTACCTA 57.366 40.909 0.00 0.00 0.00 3.08
731 839 4.069304 TGTACCAGATTGCACAAACTACC 58.931 43.478 0.00 0.00 0.00 3.18
732 840 5.391950 CCATGTACCAGATTGCACAAACTAC 60.392 44.000 0.00 0.00 0.00 2.73
744 852 4.536765 GGGTCAAAATCCATGTACCAGAT 58.463 43.478 0.00 0.00 0.00 2.90
749 857 1.063469 CGCGGGTCAAAATCCATGTAC 59.937 52.381 0.00 0.00 0.00 2.90
788 896 0.537188 TGTTGCGGGCCAAAGAAAAA 59.463 45.000 4.39 0.00 34.68 1.94
789 897 0.755686 ATGTTGCGGGCCAAAGAAAA 59.244 45.000 4.39 0.00 34.68 2.29
790 898 0.033228 CATGTTGCGGGCCAAAGAAA 59.967 50.000 4.39 0.00 34.68 2.52
791 899 1.112315 ACATGTTGCGGGCCAAAGAA 61.112 50.000 4.39 0.00 34.68 2.52
792 900 1.112315 AACATGTTGCGGGCCAAAGA 61.112 50.000 11.07 0.00 34.68 2.52
793 901 0.945265 CAACATGTTGCGGGCCAAAG 60.945 55.000 24.69 0.00 34.68 2.77
794 902 1.068753 CAACATGTTGCGGGCCAAA 59.931 52.632 24.69 0.00 34.68 3.28
795 903 2.733301 CAACATGTTGCGGGCCAA 59.267 55.556 24.69 0.00 33.45 4.52
796 904 3.301554 CCAACATGTTGCGGGCCA 61.302 61.111 29.42 0.00 39.16 5.36
797 905 4.067913 CCCAACATGTTGCGGGCC 62.068 66.667 29.42 0.00 39.16 5.80
798 906 2.490993 CTTCCCAACATGTTGCGGGC 62.491 60.000 29.97 0.00 39.16 6.13
799 907 1.586028 CTTCCCAACATGTTGCGGG 59.414 57.895 29.97 26.72 39.16 6.13
800 908 1.080569 GCTTCCCAACATGTTGCGG 60.081 57.895 29.42 28.19 39.16 5.69
801 909 0.387622 CTGCTTCCCAACATGTTGCG 60.388 55.000 29.42 22.62 39.16 4.85
802 910 0.961019 TCTGCTTCCCAACATGTTGC 59.039 50.000 29.42 19.52 39.16 4.17
803 911 2.507484 TCTCTGCTTCCCAACATGTTG 58.493 47.619 28.18 28.18 40.13 3.33
804 912 2.957402 TCTCTGCTTCCCAACATGTT 57.043 45.000 4.92 4.92 0.00 2.71
805 913 2.957402 TTCTCTGCTTCCCAACATGT 57.043 45.000 0.00 0.00 0.00 3.21
806 914 4.796038 AAATTCTCTGCTTCCCAACATG 57.204 40.909 0.00 0.00 0.00 3.21
807 915 8.773033 ATAATAAATTCTCTGCTTCCCAACAT 57.227 30.769 0.00 0.00 0.00 2.71
808 916 8.593945 AATAATAAATTCTCTGCTTCCCAACA 57.406 30.769 0.00 0.00 0.00 3.33
837 956 6.258230 TGTCAAATCTGCTTATTTGGTCTG 57.742 37.500 18.25 1.23 43.81 3.51
845 964 8.027524 TCTCCTCTAATGTCAAATCTGCTTAT 57.972 34.615 0.00 0.00 0.00 1.73
848 967 5.660417 TCTCTCCTCTAATGTCAAATCTGCT 59.340 40.000 0.00 0.00 0.00 4.24
883 1329 4.365723 GTTATCAGGGTGTACACGTATGG 58.634 47.826 19.41 7.53 0.00 2.74
896 1342 1.917273 CGTGTGTACGGTTATCAGGG 58.083 55.000 0.00 0.00 46.23 4.45
921 1367 4.749245 ATCTTGAGAAAATGAAACGCGT 57.251 36.364 5.58 5.58 0.00 6.01
922 1368 6.074888 ACAAAATCTTGAGAAAATGAAACGCG 60.075 34.615 3.53 3.53 36.33 6.01
923 1369 7.165427 ACAAAATCTTGAGAAAATGAAACGC 57.835 32.000 0.00 0.00 36.33 4.84
924 1370 8.057742 CCAACAAAATCTTGAGAAAATGAAACG 58.942 33.333 0.00 0.00 36.33 3.60
969 1415 2.611722 GGCTTTGGCGCAGGAATAAAAA 60.612 45.455 10.83 0.00 39.81 1.94
982 1428 1.308069 TTCATCAGCTCGGCTTTGGC 61.308 55.000 0.00 0.00 36.40 4.52
1024 1471 1.990614 GGGAGGAAGAAGACCGCCT 60.991 63.158 0.00 0.00 44.72 5.52
1027 1474 1.331399 GGAGGGGAGGAAGAAGACCG 61.331 65.000 0.00 0.00 0.00 4.79
1028 1475 1.331399 CGGAGGGGAGGAAGAAGACC 61.331 65.000 0.00 0.00 0.00 3.85
1029 1476 0.324460 TCGGAGGGGAGGAAGAAGAC 60.324 60.000 0.00 0.00 0.00 3.01
1215 1692 2.726351 CGAGGAAGGACTCAGGGGC 61.726 68.421 0.00 0.00 37.34 5.80
1260 1738 4.179579 GGATGAACCCAAGCGCGC 62.180 66.667 26.66 26.66 0.00 6.86
1340 1829 9.008965 CCCCAAAAGAAAAGAAAAGAAAAGAAA 57.991 29.630 0.00 0.00 0.00 2.52
1341 1830 8.160765 ACCCCAAAAGAAAAGAAAAGAAAAGAA 58.839 29.630 0.00 0.00 0.00 2.52
1342 1831 7.685481 ACCCCAAAAGAAAAGAAAAGAAAAGA 58.315 30.769 0.00 0.00 0.00 2.52
1343 1832 7.921786 ACCCCAAAAGAAAAGAAAAGAAAAG 57.078 32.000 0.00 0.00 0.00 2.27
1344 1833 7.118535 CGAACCCCAAAAGAAAAGAAAAGAAAA 59.881 33.333 0.00 0.00 0.00 2.29
1422 1934 2.087462 AAAGAAGCCGCCTTGGTTGC 62.087 55.000 0.00 0.00 41.21 4.17
1632 2148 3.719173 AAAGGAAATGAAACGGCGAAA 57.281 38.095 16.62 0.00 0.00 3.46
1633 2149 3.376540 CAAAAGGAAATGAAACGGCGAA 58.623 40.909 16.62 0.00 0.00 4.70
1635 2151 1.455408 GCAAAAGGAAATGAAACGGCG 59.545 47.619 4.80 4.80 0.00 6.46
1636 2152 2.476241 CTGCAAAAGGAAATGAAACGGC 59.524 45.455 0.00 0.00 0.00 5.68
1673 2212 2.125912 CTCGGTGTCGCCCTTCTG 60.126 66.667 0.00 0.00 36.13 3.02
1710 2249 3.170717 AGTTTATTCTCCTGGTCACCGA 58.829 45.455 0.00 0.00 0.00 4.69
1725 2264 5.700832 TCATCTTGAAGCGTTGTGAGTTTAT 59.299 36.000 0.00 0.00 0.00 1.40
1874 2413 3.300388 TCTTCTTATCCTCGGCATCAGT 58.700 45.455 0.00 0.00 0.00 3.41
1996 2535 0.905357 GCACCTTAGCCCTCTTGAGA 59.095 55.000 0.00 0.00 0.00 3.27
2025 2564 2.103263 GGTCCCGACTGCAATATCTCTT 59.897 50.000 0.00 0.00 0.00 2.85
2093 2632 2.877300 GCCTCAGCTCATCTTCAACCAA 60.877 50.000 0.00 0.00 35.50 3.67
2109 2648 2.261671 GCGACTTCTTCCGCCTCA 59.738 61.111 0.00 0.00 45.06 3.86
2171 2710 4.876107 GTCATCATAGGTGACGGTTTTCAT 59.124 41.667 0.00 0.00 36.92 2.57
2273 2812 1.986882 ACAGAAAACAAGAGCCCCAG 58.013 50.000 0.00 0.00 0.00 4.45
2274 2813 2.441750 AGTACAGAAAACAAGAGCCCCA 59.558 45.455 0.00 0.00 0.00 4.96
2283 2822 7.228507 AGCAACATGATAACAGTACAGAAAACA 59.771 33.333 0.00 0.00 0.00 2.83
2284 2823 7.584987 AGCAACATGATAACAGTACAGAAAAC 58.415 34.615 0.00 0.00 0.00 2.43
2286 2825 7.118245 CAGAGCAACATGATAACAGTACAGAAA 59.882 37.037 0.00 0.00 0.00 2.52
2296 2835 2.615912 GGAGGCAGAGCAACATGATAAC 59.384 50.000 0.00 0.00 0.00 1.89
2297 2836 2.507058 AGGAGGCAGAGCAACATGATAA 59.493 45.455 0.00 0.00 0.00 1.75
2299 2838 0.917533 AGGAGGCAGAGCAACATGAT 59.082 50.000 0.00 0.00 0.00 2.45
2300 2839 0.035725 CAGGAGGCAGAGCAACATGA 60.036 55.000 0.00 0.00 0.00 3.07
2301 2840 0.035725 TCAGGAGGCAGAGCAACATG 60.036 55.000 0.00 0.00 0.00 3.21
2302 2841 0.917533 ATCAGGAGGCAGAGCAACAT 59.082 50.000 0.00 0.00 0.00 2.71
2307 2847 4.550076 ATGTAATATCAGGAGGCAGAGC 57.450 45.455 0.00 0.00 0.00 4.09
2338 2878 2.238144 TGATCAGCTCTTCCCTTTCCTG 59.762 50.000 0.00 0.00 0.00 3.86
2373 2913 3.119637 CCTTCAACTTGTGAAACGGTGTT 60.120 43.478 0.00 0.00 45.67 3.32
2409 2949 1.248486 GAGTTCCAGGGCTTTCAACC 58.752 55.000 0.00 0.00 0.00 3.77
2416 2956 0.980231 CTGCTAGGAGTTCCAGGGCT 60.980 60.000 2.51 0.00 38.89 5.19
2428 2968 2.681848 CAGAGTCATTTTGCCTGCTAGG 59.318 50.000 0.00 0.00 38.80 3.02
2794 3336 1.547372 ACCTGACTGCATTTTCCATGC 59.453 47.619 0.00 0.00 44.76 4.06
2907 3449 0.879090 TGCAACTGAAGCTGATGCAG 59.121 50.000 0.00 0.00 41.67 4.41
2908 3450 0.879090 CTGCAACTGAAGCTGATGCA 59.121 50.000 7.17 7.17 44.07 3.96
2909 3451 1.162698 TCTGCAACTGAAGCTGATGC 58.837 50.000 0.00 0.00 35.45 3.91
2911 3453 3.271729 CTCATCTGCAACTGAAGCTGAT 58.728 45.455 10.64 10.64 46.99 2.90
2912 3454 2.614734 CCTCATCTGCAACTGAAGCTGA 60.615 50.000 0.00 0.00 42.73 4.26
2913 3455 1.738350 CCTCATCTGCAACTGAAGCTG 59.262 52.381 0.00 0.00 0.00 4.24
2914 3456 1.627329 TCCTCATCTGCAACTGAAGCT 59.373 47.619 0.00 0.00 0.00 3.74
2915 3457 2.105006 TCCTCATCTGCAACTGAAGC 57.895 50.000 0.00 0.00 0.00 3.86
2916 3458 3.374367 CACATCCTCATCTGCAACTGAAG 59.626 47.826 0.00 0.00 0.00 3.02
2917 3459 3.340928 CACATCCTCATCTGCAACTGAA 58.659 45.455 0.00 0.00 0.00 3.02
2918 3460 2.355412 CCACATCCTCATCTGCAACTGA 60.355 50.000 0.00 0.00 0.00 3.41
2919 3461 2.014857 CCACATCCTCATCTGCAACTG 58.985 52.381 0.00 0.00 0.00 3.16
2920 3462 1.064906 CCCACATCCTCATCTGCAACT 60.065 52.381 0.00 0.00 0.00 3.16
2921 3463 1.065199 TCCCACATCCTCATCTGCAAC 60.065 52.381 0.00 0.00 0.00 4.17
2922 3464 1.211212 CTCCCACATCCTCATCTGCAA 59.789 52.381 0.00 0.00 0.00 4.08
2923 3465 0.835276 CTCCCACATCCTCATCTGCA 59.165 55.000 0.00 0.00 0.00 4.41
2924 3466 1.126488 TCTCCCACATCCTCATCTGC 58.874 55.000 0.00 0.00 0.00 4.26
2925 3467 2.550423 GCATCTCCCACATCCTCATCTG 60.550 54.545 0.00 0.00 0.00 2.90
2926 3468 1.698532 GCATCTCCCACATCCTCATCT 59.301 52.381 0.00 0.00 0.00 2.90
2927 3469 1.419012 TGCATCTCCCACATCCTCATC 59.581 52.381 0.00 0.00 0.00 2.92
2928 3470 1.420514 CTGCATCTCCCACATCCTCAT 59.579 52.381 0.00 0.00 0.00 2.90
2929 3471 0.835276 CTGCATCTCCCACATCCTCA 59.165 55.000 0.00 0.00 0.00 3.86
2930 3472 0.534652 GCTGCATCTCCCACATCCTC 60.535 60.000 0.00 0.00 0.00 3.71
2931 3473 0.987081 AGCTGCATCTCCCACATCCT 60.987 55.000 1.02 0.00 0.00 3.24
2932 3474 0.818445 CAGCTGCATCTCCCACATCC 60.818 60.000 0.00 0.00 0.00 3.51
2933 3475 1.445716 GCAGCTGCATCTCCCACATC 61.446 60.000 33.36 0.00 41.59 3.06
2934 3476 1.453379 GCAGCTGCATCTCCCACAT 60.453 57.895 33.36 0.00 41.59 3.21
2935 3477 2.045634 GCAGCTGCATCTCCCACA 60.046 61.111 33.36 0.00 41.59 4.17
2950 3492 1.345415 TCAGACACAGAAGCTGATGCA 59.655 47.619 0.82 0.00 42.74 3.96
3412 3954 4.142816 CGTGAAATCAAGTCATCCCACTTC 60.143 45.833 0.00 0.00 34.17 3.01
4462 5006 7.815840 TTTTATCGAATGGGAATGCATCTAA 57.184 32.000 0.00 0.00 0.00 2.10
4648 5196 7.596749 AAGTTTAATCAGGTTAGTGTGATCG 57.403 36.000 0.00 0.00 32.02 3.69
5462 6022 2.749800 GCCCACCTGAAGACTTTGAACT 60.750 50.000 0.00 0.00 0.00 3.01
5495 6058 3.050275 GCGGAGGACAGCGCTTTT 61.050 61.111 7.50 0.00 0.00 2.27
5631 6194 5.780282 TCCTACTGGAAGAAGAGTTTGATGA 59.220 40.000 0.00 0.00 39.87 2.92
5648 6211 2.862536 CTGCACGATCATGTTCCTACTG 59.137 50.000 0.00 0.00 0.00 2.74
5816 6379 3.614698 CCTGCGCCCCTTTGCAAA 61.615 61.111 12.14 12.14 41.22 3.68
5858 6421 2.092646 AGCCGCAAATTACCCATACTCA 60.093 45.455 0.00 0.00 0.00 3.41
6016 6588 7.962995 AACTAACATTCCTCTGTCATCTCTA 57.037 36.000 0.00 0.00 0.00 2.43
6024 6596 4.323562 GCCACCTAACTAACATTCCTCTGT 60.324 45.833 0.00 0.00 0.00 3.41
6027 6599 3.195661 CGCCACCTAACTAACATTCCTC 58.804 50.000 0.00 0.00 0.00 3.71
6054 6627 6.402981 ACCACTAATTAACTGGGGAGAAAT 57.597 37.500 11.75 0.00 0.00 2.17
6169 6748 1.001406 AGAAGCACGGAGACAGAAAGG 59.999 52.381 0.00 0.00 0.00 3.11
6206 6785 3.679980 CAGAAACAGAACGACCCATACAG 59.320 47.826 0.00 0.00 0.00 2.74
6213 6792 5.232414 GCTCATATACAGAAACAGAACGACC 59.768 44.000 0.00 0.00 0.00 4.79
6232 6811 2.029288 CAAGTGACACCGCGCTCAT 61.029 57.895 5.56 0.00 0.00 2.90
6233 6812 2.661537 CAAGTGACACCGCGCTCA 60.662 61.111 5.56 0.00 0.00 4.26
6235 6814 2.644555 AAGACAAGTGACACCGCGCT 62.645 55.000 5.56 0.00 0.00 5.92
6239 6818 1.195448 GATGCAAGACAAGTGACACCG 59.805 52.381 0.84 0.00 0.00 4.94
6240 6819 2.498167 AGATGCAAGACAAGTGACACC 58.502 47.619 0.84 0.00 0.00 4.16
6250 6830 2.094762 AACCACCGTAGATGCAAGAC 57.905 50.000 0.00 0.00 0.00 3.01
6262 6842 9.284594 CACATAAAAGTATATTTGAAACCACCG 57.715 33.333 0.00 0.00 0.00 4.94
6288 6868 7.358066 CAATTGCATCTGGAGTAATGTATGAC 58.642 38.462 0.00 0.00 0.00 3.06
6294 6874 4.913335 AGCAATTGCATCTGGAGTAATG 57.087 40.909 30.89 0.00 45.16 1.90
6353 6933 6.450667 GCGCGAAAATAAGTATTCACAACAAC 60.451 38.462 12.10 0.00 0.00 3.32
6366 6946 4.260011 GGAAGAAGAGAGCGCGAAAATAAG 60.260 45.833 12.10 0.00 0.00 1.73
6550 7134 6.745450 CGCGGAAATAGTTATTCACAACAATT 59.255 34.615 0.00 0.00 0.00 2.32
6565 7149 1.255600 GAAACGAGAGCGCGGAAATAG 59.744 52.381 8.83 0.00 42.48 1.73
6581 7165 5.997384 ATATATACAGACGAGGGGGAAAC 57.003 43.478 0.00 0.00 0.00 2.78
6691 7275 9.269453 AGTACACCAGAGTATTACTTTCAAAAC 57.731 33.333 0.00 0.00 0.00 2.43
6723 7307 5.661056 TGTACATCGTCTTCCAGAAATCT 57.339 39.130 0.00 0.00 0.00 2.40
6726 7310 6.708502 TCAAAATGTACATCGTCTTCCAGAAA 59.291 34.615 9.23 0.00 0.00 2.52
6727 7311 6.227522 TCAAAATGTACATCGTCTTCCAGAA 58.772 36.000 9.23 0.00 0.00 3.02
6729 7313 5.869344 TCTCAAAATGTACATCGTCTTCCAG 59.131 40.000 9.23 0.28 0.00 3.86
6730 7314 5.789521 TCTCAAAATGTACATCGTCTTCCA 58.210 37.500 9.23 0.00 0.00 3.53
6731 7315 6.535150 TGATCTCAAAATGTACATCGTCTTCC 59.465 38.462 9.23 0.00 0.00 3.46
6733 7317 7.905604 TTGATCTCAAAATGTACATCGTCTT 57.094 32.000 9.23 0.00 32.11 3.01
6734 7318 7.604164 AGTTTGATCTCAAAATGTACATCGTCT 59.396 33.333 9.23 0.00 46.08 4.18
6735 7319 7.743104 AGTTTGATCTCAAAATGTACATCGTC 58.257 34.615 9.23 1.29 46.08 4.20
6736 7320 7.672983 AGTTTGATCTCAAAATGTACATCGT 57.327 32.000 9.23 0.00 46.08 3.73
6861 7472 3.814945 CTTCTCGAATCAGTGTTTTGCC 58.185 45.455 0.00 0.00 0.00 4.52
6899 7510 6.705825 GCAGACCCATAGAATTGTTTTGTTTT 59.294 34.615 0.00 0.00 0.00 2.43
6902 7513 4.832266 TGCAGACCCATAGAATTGTTTTGT 59.168 37.500 0.00 0.00 0.00 2.83
6937 7548 1.838846 GGGATCATCTCGGCCTCCA 60.839 63.158 0.00 0.00 0.00 3.86
7039 7650 6.418057 AGTTTGTTTCCCAGCATTAATTCA 57.582 33.333 0.00 0.00 0.00 2.57
7137 7865 2.359850 TCACAATGGCGAGGGTGC 60.360 61.111 0.00 0.00 0.00 5.01
7139 7867 1.003355 CTGTCACAATGGCGAGGGT 60.003 57.895 0.00 0.00 0.00 4.34
7145 7873 6.032094 CAGAAATATTGACTGTCACAATGGC 58.968 40.000 10.56 3.57 38.25 4.40
7217 7952 9.374838 GTCTCGGTAGGAAAATTTTACTTATCA 57.625 33.333 20.60 0.00 32.49 2.15
7218 7953 8.824781 GGTCTCGGTAGGAAAATTTTACTTATC 58.175 37.037 20.60 11.37 32.49 1.75
7219 7954 7.772292 GGGTCTCGGTAGGAAAATTTTACTTAT 59.228 37.037 20.60 0.00 32.49 1.73
7220 7955 7.105588 GGGTCTCGGTAGGAAAATTTTACTTA 58.894 38.462 20.60 4.84 32.49 2.24
7221 7956 5.942236 GGGTCTCGGTAGGAAAATTTTACTT 59.058 40.000 20.60 5.76 32.49 2.24
7222 7957 5.013391 TGGGTCTCGGTAGGAAAATTTTACT 59.987 40.000 19.42 19.42 35.09 2.24
7223 7958 5.247862 TGGGTCTCGGTAGGAAAATTTTAC 58.752 41.667 4.87 4.87 0.00 2.01
7224 7959 5.502089 TGGGTCTCGGTAGGAAAATTTTA 57.498 39.130 2.75 0.00 0.00 1.52
7225 7960 4.376225 TGGGTCTCGGTAGGAAAATTTT 57.624 40.909 2.28 2.28 0.00 1.82
7226 7961 4.586306 ATGGGTCTCGGTAGGAAAATTT 57.414 40.909 0.00 0.00 0.00 1.82
7227 7962 4.270008 CAATGGGTCTCGGTAGGAAAATT 58.730 43.478 0.00 0.00 0.00 1.82
7228 7963 3.886123 CAATGGGTCTCGGTAGGAAAAT 58.114 45.455 0.00 0.00 0.00 1.82
7229 7964 2.617021 GCAATGGGTCTCGGTAGGAAAA 60.617 50.000 0.00 0.00 0.00 2.29
7230 7965 1.065709 GCAATGGGTCTCGGTAGGAAA 60.066 52.381 0.00 0.00 0.00 3.13
7231 7966 0.539986 GCAATGGGTCTCGGTAGGAA 59.460 55.000 0.00 0.00 0.00 3.36
7232 7967 0.616395 TGCAATGGGTCTCGGTAGGA 60.616 55.000 0.00 0.00 0.00 2.94
7233 7968 0.251916 TTGCAATGGGTCTCGGTAGG 59.748 55.000 0.00 0.00 0.00 3.18
7234 7969 2.107950 TTTGCAATGGGTCTCGGTAG 57.892 50.000 0.00 0.00 0.00 3.18
7235 7970 2.554893 GTTTTTGCAATGGGTCTCGGTA 59.445 45.455 0.00 0.00 0.00 4.02
7236 7971 1.339929 GTTTTTGCAATGGGTCTCGGT 59.660 47.619 0.00 0.00 0.00 4.69
7237 7972 1.339610 TGTTTTTGCAATGGGTCTCGG 59.660 47.619 0.00 0.00 0.00 4.63
7238 7973 2.791383 TGTTTTTGCAATGGGTCTCG 57.209 45.000 0.00 0.00 0.00 4.04
7239 7974 3.791245 TGTTGTTTTTGCAATGGGTCTC 58.209 40.909 0.00 0.00 0.00 3.36
7240 7975 3.902881 TGTTGTTTTTGCAATGGGTCT 57.097 38.095 0.00 0.00 0.00 3.85
7241 7976 4.657055 GTTTGTTGTTTTTGCAATGGGTC 58.343 39.130 0.00 0.00 0.00 4.46
7242 7977 4.693538 GTTTGTTGTTTTTGCAATGGGT 57.306 36.364 0.00 0.00 0.00 4.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.