Multiple sequence alignment - TraesCS3A01G080600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G080600 chr3A 100.000 2981 0 0 1 2981 52209263 52206283 0.000000e+00 5505
1 TraesCS3A01G080600 chr3A 95.597 159 7 0 835 993 516795056 516795214 3.810000e-64 255
2 TraesCS3A01G080600 chr3A 92.500 160 11 1 835 994 486037675 486037517 8.310000e-56 228
3 TraesCS3A01G080600 chr3A 95.312 128 5 1 997 1123 514262573 514262446 5.040000e-48 202
4 TraesCS3A01G080600 chr2A 97.346 1997 41 8 995 2981 561008512 561010506 0.000000e+00 3384
5 TraesCS3A01G080600 chr6A 98.067 1552 25 3 997 2544 573138867 573137317 0.000000e+00 2695
6 TraesCS3A01G080600 chr6A 96.911 1036 29 1 1524 2556 615024985 615026020 0.000000e+00 1733
7 TraesCS3A01G080600 chr6A 94.458 415 23 0 1078 1492 615024573 615024987 9.010000e-180 640
8 TraesCS3A01G080600 chr6A 92.308 156 12 0 839 994 84910683 84910528 3.870000e-54 222
9 TraesCS3A01G080600 chr5D 95.011 1343 57 3 1118 2457 435279051 435277716 0.000000e+00 2100
10 TraesCS3A01G080600 chr5D 92.486 519 30 7 2467 2981 27513149 27512636 0.000000e+00 734
11 TraesCS3A01G080600 chr5D 96.154 130 3 2 995 1123 526269783 526269911 8.370000e-51 211
12 TraesCS3A01G080600 chr5B 95.000 1340 57 2 1118 2457 528591065 528589736 0.000000e+00 2095
13 TraesCS3A01G080600 chr5A 94.862 1343 51 3 1118 2457 549220056 549218729 0.000000e+00 2082
14 TraesCS3A01G080600 chr1B 96.224 715 25 1 1 713 295769450 295768736 0.000000e+00 1170
15 TraesCS3A01G080600 chr1B 96.078 714 26 1 1 712 337937889 337937176 0.000000e+00 1162
16 TraesCS3A01G080600 chr1B 95.938 714 27 2 1 713 561625396 561626108 0.000000e+00 1157
17 TraesCS3A01G080600 chr1B 92.706 521 30 5 2466 2981 647911358 647911875 0.000000e+00 745
18 TraesCS3A01G080600 chr1B 92.308 143 10 1 982 1123 536776329 536776471 5.040000e-48 202
19 TraesCS3A01G080600 chr2B 95.810 716 29 1 1 715 316103966 316103251 0.000000e+00 1155
20 TraesCS3A01G080600 chr2B 95.664 715 31 0 1 715 530128994 530129708 0.000000e+00 1149
21 TraesCS3A01G080600 chr2B 95.670 716 26 2 1 712 296027044 296026330 0.000000e+00 1146
22 TraesCS3A01G080600 chr7A 95.664 715 30 1 1 715 630950016 630950729 0.000000e+00 1147
23 TraesCS3A01G080600 chr7A 91.555 521 34 7 2466 2981 662979578 662980093 0.000000e+00 710
24 TraesCS3A01G080600 chr7A 96.795 156 5 0 839 994 163616054 163616209 8.200000e-66 261
25 TraesCS3A01G080600 chr4A 95.670 716 28 2 1 715 650175280 650175993 0.000000e+00 1147
26 TraesCS3A01G080600 chr4A 94.231 156 9 0 839 994 591072458 591072613 3.840000e-59 239
27 TraesCS3A01G080600 chr6B 95.397 717 31 2 1 716 179996087 179995372 0.000000e+00 1140
28 TraesCS3A01G080600 chr3B 93.834 519 23 5 2466 2981 181332963 181332451 0.000000e+00 773
29 TraesCS3A01G080600 chr3B 96.923 130 3 1 995 1123 82308826 82308955 1.800000e-52 217
30 TraesCS3A01G080600 chr3B 88.125 160 14 2 835 994 688383569 688383415 5.070000e-43 185
31 TraesCS3A01G080600 chr6D 92.115 520 33 5 2466 2981 222717504 222718019 0.000000e+00 726
32 TraesCS3A01G080600 chr6D 83.439 157 20 2 839 994 457092850 457092699 1.110000e-29 141
33 TraesCS3A01G080600 chr1A 91.939 521 34 6 2466 2981 372216710 372217227 0.000000e+00 723
34 TraesCS3A01G080600 chr1A 91.555 521 36 6 2466 2981 431944703 431944186 0.000000e+00 712
35 TraesCS3A01G080600 chr2D 90.962 520 37 6 2466 2981 50657753 50658266 0.000000e+00 691
36 TraesCS3A01G080600 chr2D 95.000 160 8 0 835 994 568117649 568117808 4.930000e-63 252
37 TraesCS3A01G080600 chr7D 96.923 130 3 1 995 1123 428708963 428708834 1.800000e-52 217
38 TraesCS3A01G080600 chrUn 96.899 129 3 1 996 1123 439380671 439380543 6.470000e-52 215
39 TraesCS3A01G080600 chr3D 95.385 130 5 1 995 1123 424471914 424472043 3.890000e-49 206


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G080600 chr3A 52206283 52209263 2980 True 5505.0 5505 100.0000 1 2981 1 chr3A.!!$R1 2980
1 TraesCS3A01G080600 chr2A 561008512 561010506 1994 False 3384.0 3384 97.3460 995 2981 1 chr2A.!!$F1 1986
2 TraesCS3A01G080600 chr6A 573137317 573138867 1550 True 2695.0 2695 98.0670 997 2544 1 chr6A.!!$R2 1547
3 TraesCS3A01G080600 chr6A 615024573 615026020 1447 False 1186.5 1733 95.6845 1078 2556 2 chr6A.!!$F1 1478
4 TraesCS3A01G080600 chr5D 435277716 435279051 1335 True 2100.0 2100 95.0110 1118 2457 1 chr5D.!!$R2 1339
5 TraesCS3A01G080600 chr5D 27512636 27513149 513 True 734.0 734 92.4860 2467 2981 1 chr5D.!!$R1 514
6 TraesCS3A01G080600 chr5B 528589736 528591065 1329 True 2095.0 2095 95.0000 1118 2457 1 chr5B.!!$R1 1339
7 TraesCS3A01G080600 chr5A 549218729 549220056 1327 True 2082.0 2082 94.8620 1118 2457 1 chr5A.!!$R1 1339
8 TraesCS3A01G080600 chr1B 295768736 295769450 714 True 1170.0 1170 96.2240 1 713 1 chr1B.!!$R1 712
9 TraesCS3A01G080600 chr1B 337937176 337937889 713 True 1162.0 1162 96.0780 1 712 1 chr1B.!!$R2 711
10 TraesCS3A01G080600 chr1B 561625396 561626108 712 False 1157.0 1157 95.9380 1 713 1 chr1B.!!$F2 712
11 TraesCS3A01G080600 chr1B 647911358 647911875 517 False 745.0 745 92.7060 2466 2981 1 chr1B.!!$F3 515
12 TraesCS3A01G080600 chr2B 316103251 316103966 715 True 1155.0 1155 95.8100 1 715 1 chr2B.!!$R2 714
13 TraesCS3A01G080600 chr2B 530128994 530129708 714 False 1149.0 1149 95.6640 1 715 1 chr2B.!!$F1 714
14 TraesCS3A01G080600 chr2B 296026330 296027044 714 True 1146.0 1146 95.6700 1 712 1 chr2B.!!$R1 711
15 TraesCS3A01G080600 chr7A 630950016 630950729 713 False 1147.0 1147 95.6640 1 715 1 chr7A.!!$F2 714
16 TraesCS3A01G080600 chr7A 662979578 662980093 515 False 710.0 710 91.5550 2466 2981 1 chr7A.!!$F3 515
17 TraesCS3A01G080600 chr4A 650175280 650175993 713 False 1147.0 1147 95.6700 1 715 1 chr4A.!!$F2 714
18 TraesCS3A01G080600 chr6B 179995372 179996087 715 True 1140.0 1140 95.3970 1 716 1 chr6B.!!$R1 715
19 TraesCS3A01G080600 chr3B 181332451 181332963 512 True 773.0 773 93.8340 2466 2981 1 chr3B.!!$R1 515
20 TraesCS3A01G080600 chr6D 222717504 222718019 515 False 726.0 726 92.1150 2466 2981 1 chr6D.!!$F1 515
21 TraesCS3A01G080600 chr1A 372216710 372217227 517 False 723.0 723 91.9390 2466 2981 1 chr1A.!!$F1 515
22 TraesCS3A01G080600 chr1A 431944186 431944703 517 True 712.0 712 91.5550 2466 2981 1 chr1A.!!$R1 515
23 TraesCS3A01G080600 chr2D 50657753 50658266 513 False 691.0 691 90.9620 2466 2981 1 chr2D.!!$F1 515

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
955 963 0.040058 TGCTTCACCATCCCATGCTT 59.96 50.0 0.0 0.0 0.0 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2841 2936 4.202357 TGTGTTGTGTTCATCTAAGAGGCT 60.202 41.667 0.0 0.0 0.0 4.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
149 157 3.211045 AGTTGCCACGATGTTTACACTT 58.789 40.909 0.00 0.00 0.00 3.16
220 228 8.246180 AGTTTGTAGATCATGGCAATTTTAGTG 58.754 33.333 0.00 0.00 0.00 2.74
224 232 8.243426 TGTAGATCATGGCAATTTTAGTGTTTC 58.757 33.333 0.00 0.00 0.00 2.78
287 295 6.798315 TTTTGTATGAACCATGGCAATTTG 57.202 33.333 13.04 0.00 0.00 2.32
458 466 6.071784 GGCAATTCATATGCAATAGACATGGA 60.072 38.462 0.00 0.00 45.60 3.41
504 512 6.468333 TCATCAAAACATATCAACATGGGG 57.532 37.500 0.00 0.00 0.00 4.96
527 535 5.220892 GGTCTAGTTTCGAAGATCTCATCGT 60.221 44.000 14.72 1.01 38.14 3.73
644 652 1.164041 TGCATGCGATGAGATGGCAG 61.164 55.000 14.09 0.00 46.95 4.85
653 661 4.375272 CGATGAGATGGCAGTCTGTTTAT 58.625 43.478 0.93 0.00 0.00 1.40
716 724 1.588674 CAGTTAGCGTGACCCAAACA 58.411 50.000 0.00 0.00 0.00 2.83
717 725 1.263217 CAGTTAGCGTGACCCAAACAC 59.737 52.381 0.00 0.00 35.26 3.32
722 730 2.326550 GTGACCCAAACACGCACG 59.673 61.111 0.00 0.00 0.00 5.34
723 731 2.174969 GTGACCCAAACACGCACGA 61.175 57.895 0.00 0.00 0.00 4.35
724 732 1.449778 TGACCCAAACACGCACGAA 60.450 52.632 0.00 0.00 0.00 3.85
725 733 0.816018 TGACCCAAACACGCACGAAT 60.816 50.000 0.00 0.00 0.00 3.34
726 734 0.385473 GACCCAAACACGCACGAATG 60.385 55.000 0.00 0.00 0.00 2.67
727 735 0.816018 ACCCAAACACGCACGAATGA 60.816 50.000 0.00 0.00 0.00 2.57
728 736 0.385473 CCCAAACACGCACGAATGAC 60.385 55.000 0.00 0.00 0.00 3.06
730 738 1.083015 AAACACGCACGAATGACGC 60.083 52.632 0.00 0.00 46.94 5.19
731 739 1.767127 AAACACGCACGAATGACGCA 61.767 50.000 0.00 0.00 46.94 5.24
732 740 2.202046 CACGCACGAATGACGCAC 60.202 61.111 0.00 0.00 46.94 5.34
733 741 3.762992 ACGCACGAATGACGCACG 61.763 61.111 0.00 0.00 46.94 5.34
734 742 4.483683 CGCACGAATGACGCACGG 62.484 66.667 0.00 0.00 46.94 4.94
735 743 3.411351 GCACGAATGACGCACGGT 61.411 61.111 0.00 0.00 46.94 4.83
736 744 2.089936 GCACGAATGACGCACGGTA 61.090 57.895 0.00 0.00 46.94 4.02
737 745 1.619526 GCACGAATGACGCACGGTAA 61.620 55.000 0.00 0.00 46.94 2.85
738 746 0.365523 CACGAATGACGCACGGTAAG 59.634 55.000 0.00 0.00 46.94 2.34
739 747 0.241749 ACGAATGACGCACGGTAAGA 59.758 50.000 0.00 0.00 46.94 2.10
740 748 0.638746 CGAATGACGCACGGTAAGAC 59.361 55.000 0.00 0.00 34.51 3.01
741 749 0.997196 GAATGACGCACGGTAAGACC 59.003 55.000 0.00 0.00 34.05 3.85
754 762 3.700154 GGTAAGACCGTTCCTATCGAAC 58.300 50.000 0.00 0.00 46.36 3.95
770 778 9.521841 TCCTATCGAACAAACAGATATCTATCT 57.478 33.333 4.54 0.00 43.51 1.98
774 782 7.582352 TCGAACAAACAGATATCTATCTACGG 58.418 38.462 4.54 0.00 40.91 4.02
775 783 6.802348 CGAACAAACAGATATCTATCTACGGG 59.198 42.308 4.54 0.00 40.91 5.28
776 784 7.521748 CGAACAAACAGATATCTATCTACGGGT 60.522 40.741 4.54 0.00 40.91 5.28
777 785 8.701908 AACAAACAGATATCTATCTACGGGTA 57.298 34.615 4.54 0.00 40.91 3.69
778 786 8.880991 ACAAACAGATATCTATCTACGGGTAT 57.119 34.615 4.54 0.00 40.91 2.73
779 787 8.958506 ACAAACAGATATCTATCTACGGGTATC 58.041 37.037 4.54 0.00 40.91 2.24
780 788 9.179909 CAAACAGATATCTATCTACGGGTATCT 57.820 37.037 4.54 0.00 40.91 1.98
797 805 7.716123 ACGGGTATCTATCTATATCTACACAGC 59.284 40.741 0.00 0.00 0.00 4.40
798 806 7.934665 CGGGTATCTATCTATATCTACACAGCT 59.065 40.741 0.00 0.00 0.00 4.24
799 807 9.280174 GGGTATCTATCTATATCTACACAGCTC 57.720 40.741 0.00 0.00 0.00 4.09
843 851 4.965119 GAAAAGCATTTCTCCCGTGTAT 57.035 40.909 7.15 0.00 37.28 2.29
844 852 4.662145 GAAAAGCATTTCTCCCGTGTATG 58.338 43.478 7.15 0.00 37.28 2.39
845 853 2.332063 AGCATTTCTCCCGTGTATGG 57.668 50.000 0.00 0.00 0.00 2.74
846 854 4.186041 AAAGCATTTCTCCCGTGTATGGG 61.186 47.826 2.56 2.56 42.80 4.00
853 861 2.812499 CCGTGTATGGGAGGTCCG 59.188 66.667 0.00 0.00 38.76 4.79
854 862 2.056223 CCGTGTATGGGAGGTCCGT 61.056 63.158 0.00 0.00 38.76 4.69
855 863 1.610554 CCGTGTATGGGAGGTCCGTT 61.611 60.000 0.00 0.00 38.76 4.44
856 864 0.179119 CGTGTATGGGAGGTCCGTTC 60.179 60.000 0.00 0.00 38.76 3.95
857 865 0.899720 GTGTATGGGAGGTCCGTTCA 59.100 55.000 0.00 0.00 38.76 3.18
858 866 1.485066 GTGTATGGGAGGTCCGTTCAT 59.515 52.381 0.00 0.00 34.90 2.57
859 867 2.093128 GTGTATGGGAGGTCCGTTCATT 60.093 50.000 0.00 0.00 34.90 2.57
860 868 2.574369 TGTATGGGAGGTCCGTTCATTT 59.426 45.455 0.00 0.00 38.76 2.32
861 869 2.899303 ATGGGAGGTCCGTTCATTTT 57.101 45.000 0.00 0.00 38.76 1.82
862 870 2.668144 TGGGAGGTCCGTTCATTTTT 57.332 45.000 0.00 0.00 38.76 1.94
863 871 2.510613 TGGGAGGTCCGTTCATTTTTC 58.489 47.619 0.00 0.00 38.76 2.29
864 872 2.107552 TGGGAGGTCCGTTCATTTTTCT 59.892 45.455 0.00 0.00 38.76 2.52
865 873 3.154710 GGGAGGTCCGTTCATTTTTCTT 58.845 45.455 0.00 0.00 36.71 2.52
866 874 3.057526 GGGAGGTCCGTTCATTTTTCTTG 60.058 47.826 0.00 0.00 36.71 3.02
867 875 3.057526 GGAGGTCCGTTCATTTTTCTTGG 60.058 47.826 0.00 0.00 0.00 3.61
868 876 3.818773 GAGGTCCGTTCATTTTTCTTGGA 59.181 43.478 0.00 0.00 0.00 3.53
869 877 3.821033 AGGTCCGTTCATTTTTCTTGGAG 59.179 43.478 0.00 0.00 0.00 3.86
870 878 3.818773 GGTCCGTTCATTTTTCTTGGAGA 59.181 43.478 0.00 0.00 0.00 3.71
871 879 4.459337 GGTCCGTTCATTTTTCTTGGAGAT 59.541 41.667 0.00 0.00 0.00 2.75
872 880 5.048013 GGTCCGTTCATTTTTCTTGGAGATT 60.048 40.000 0.00 0.00 0.00 2.40
873 881 6.086871 GTCCGTTCATTTTTCTTGGAGATTC 58.913 40.000 0.00 0.00 0.00 2.52
874 882 5.088739 CCGTTCATTTTTCTTGGAGATTCG 58.911 41.667 0.00 0.00 0.00 3.34
875 883 5.106712 CCGTTCATTTTTCTTGGAGATTCGA 60.107 40.000 0.00 0.00 0.00 3.71
876 884 6.403636 CCGTTCATTTTTCTTGGAGATTCGAT 60.404 38.462 0.00 0.00 0.00 3.59
877 885 6.467047 CGTTCATTTTTCTTGGAGATTCGATG 59.533 38.462 0.00 0.00 0.00 3.84
878 886 7.308435 GTTCATTTTTCTTGGAGATTCGATGT 58.692 34.615 0.00 0.00 0.00 3.06
879 887 7.452880 TCATTTTTCTTGGAGATTCGATGTT 57.547 32.000 0.00 0.00 0.00 2.71
880 888 7.307694 TCATTTTTCTTGGAGATTCGATGTTG 58.692 34.615 0.00 0.00 0.00 3.33
881 889 6.633500 TTTTTCTTGGAGATTCGATGTTGT 57.367 33.333 0.00 0.00 0.00 3.32
882 890 5.611796 TTTCTTGGAGATTCGATGTTGTG 57.388 39.130 0.00 0.00 0.00 3.33
883 891 3.002791 TCTTGGAGATTCGATGTTGTGC 58.997 45.455 0.00 0.00 0.00 4.57
884 892 1.358877 TGGAGATTCGATGTTGTGCG 58.641 50.000 0.00 0.00 0.00 5.34
885 893 1.337728 TGGAGATTCGATGTTGTGCGT 60.338 47.619 0.00 0.00 0.00 5.24
886 894 1.732259 GGAGATTCGATGTTGTGCGTT 59.268 47.619 0.00 0.00 0.00 4.84
887 895 2.927477 GGAGATTCGATGTTGTGCGTTA 59.073 45.455 0.00 0.00 0.00 3.18
888 896 3.369756 GGAGATTCGATGTTGTGCGTTAA 59.630 43.478 0.00 0.00 0.00 2.01
889 897 4.034048 GGAGATTCGATGTTGTGCGTTAAT 59.966 41.667 0.00 0.00 0.00 1.40
890 898 4.897224 AGATTCGATGTTGTGCGTTAATG 58.103 39.130 0.00 0.00 0.00 1.90
891 899 2.519002 TCGATGTTGTGCGTTAATGC 57.481 45.000 12.91 12.91 0.00 3.56
892 900 2.073056 TCGATGTTGTGCGTTAATGCT 58.927 42.857 19.94 0.00 35.36 3.79
893 901 2.093625 TCGATGTTGTGCGTTAATGCTC 59.906 45.455 19.94 16.62 35.36 4.26
894 902 2.094258 CGATGTTGTGCGTTAATGCTCT 59.906 45.455 19.94 1.45 35.36 4.09
895 903 3.424829 CGATGTTGTGCGTTAATGCTCTT 60.425 43.478 19.94 6.93 35.36 2.85
896 904 3.980646 TGTTGTGCGTTAATGCTCTTT 57.019 38.095 19.94 0.00 35.36 2.52
897 905 3.626977 TGTTGTGCGTTAATGCTCTTTG 58.373 40.909 19.94 0.00 35.36 2.77
898 906 3.066064 TGTTGTGCGTTAATGCTCTTTGT 59.934 39.130 19.94 0.00 35.36 2.83
899 907 4.273724 TGTTGTGCGTTAATGCTCTTTGTA 59.726 37.500 19.94 0.00 35.36 2.41
900 908 4.661993 TGTGCGTTAATGCTCTTTGTAG 57.338 40.909 19.94 0.00 35.36 2.74
901 909 4.062293 TGTGCGTTAATGCTCTTTGTAGT 58.938 39.130 19.94 0.00 35.36 2.73
902 910 4.513692 TGTGCGTTAATGCTCTTTGTAGTT 59.486 37.500 19.94 0.00 35.36 2.24
903 911 5.008217 TGTGCGTTAATGCTCTTTGTAGTTT 59.992 36.000 19.94 0.00 35.36 2.66
904 912 5.339611 GTGCGTTAATGCTCTTTGTAGTTTG 59.660 40.000 19.94 0.00 35.36 2.93
905 913 5.008217 TGCGTTAATGCTCTTTGTAGTTTGT 59.992 36.000 19.94 0.00 35.36 2.83
906 914 5.564127 GCGTTAATGCTCTTTGTAGTTTGTC 59.436 40.000 12.54 0.00 0.00 3.18
907 915 6.655062 CGTTAATGCTCTTTGTAGTTTGTCA 58.345 36.000 0.00 0.00 0.00 3.58
908 916 6.792250 CGTTAATGCTCTTTGTAGTTTGTCAG 59.208 38.462 0.00 0.00 0.00 3.51
909 917 7.307160 CGTTAATGCTCTTTGTAGTTTGTCAGA 60.307 37.037 0.00 0.00 0.00 3.27
910 918 8.507249 GTTAATGCTCTTTGTAGTTTGTCAGAT 58.493 33.333 0.00 0.00 0.00 2.90
911 919 6.734104 ATGCTCTTTGTAGTTTGTCAGATC 57.266 37.500 0.00 0.00 0.00 2.75
912 920 5.858381 TGCTCTTTGTAGTTTGTCAGATCT 58.142 37.500 0.00 0.00 0.00 2.75
913 921 6.291377 TGCTCTTTGTAGTTTGTCAGATCTT 58.709 36.000 0.00 0.00 0.00 2.40
914 922 6.425114 TGCTCTTTGTAGTTTGTCAGATCTTC 59.575 38.462 0.00 0.00 0.00 2.87
915 923 6.128418 GCTCTTTGTAGTTTGTCAGATCTTCC 60.128 42.308 0.00 0.00 0.00 3.46
916 924 7.067496 TCTTTGTAGTTTGTCAGATCTTCCT 57.933 36.000 0.00 0.00 0.00 3.36
917 925 7.155328 TCTTTGTAGTTTGTCAGATCTTCCTC 58.845 38.462 0.00 0.00 0.00 3.71
918 926 6.672266 TTGTAGTTTGTCAGATCTTCCTCT 57.328 37.500 0.00 0.00 0.00 3.69
919 927 6.030548 TGTAGTTTGTCAGATCTTCCTCTG 57.969 41.667 0.00 0.00 43.33 3.35
925 933 3.175438 TCAGATCTTCCTCTGACCACA 57.825 47.619 0.00 0.00 45.13 4.17
926 934 3.717576 TCAGATCTTCCTCTGACCACAT 58.282 45.455 0.00 0.00 45.13 3.21
927 935 3.450096 TCAGATCTTCCTCTGACCACATG 59.550 47.826 0.00 0.00 45.13 3.21
928 936 2.170187 AGATCTTCCTCTGACCACATGC 59.830 50.000 0.00 0.00 0.00 4.06
929 937 1.351076 TCTTCCTCTGACCACATGCA 58.649 50.000 0.00 0.00 0.00 3.96
930 938 1.699083 TCTTCCTCTGACCACATGCAA 59.301 47.619 0.00 0.00 0.00 4.08
931 939 2.082231 CTTCCTCTGACCACATGCAAG 58.918 52.381 0.00 0.00 0.00 4.01
932 940 0.321919 TCCTCTGACCACATGCAAGC 60.322 55.000 0.00 0.00 0.00 4.01
933 941 0.607217 CCTCTGACCACATGCAAGCA 60.607 55.000 0.00 0.00 0.00 3.91
934 942 1.460504 CTCTGACCACATGCAAGCAT 58.539 50.000 0.86 0.86 37.08 3.79
935 943 2.635714 CTCTGACCACATGCAAGCATA 58.364 47.619 7.29 0.00 34.91 3.14
936 944 3.211865 CTCTGACCACATGCAAGCATAT 58.788 45.455 7.29 0.00 34.91 1.78
937 945 2.946990 TCTGACCACATGCAAGCATATG 59.053 45.455 7.29 6.78 34.91 1.78
938 946 1.406180 TGACCACATGCAAGCATATGC 59.594 47.619 20.36 20.36 46.58 3.14
950 958 1.985473 GCATATGCTTCACCATCCCA 58.015 50.000 20.64 0.00 38.21 4.37
951 959 2.522185 GCATATGCTTCACCATCCCAT 58.478 47.619 20.64 0.00 38.21 4.00
952 960 2.230508 GCATATGCTTCACCATCCCATG 59.769 50.000 20.64 0.00 38.21 3.66
953 961 1.985473 TATGCTTCACCATCCCATGC 58.015 50.000 0.00 0.00 0.00 4.06
954 962 0.260816 ATGCTTCACCATCCCATGCT 59.739 50.000 0.00 0.00 0.00 3.79
955 963 0.040058 TGCTTCACCATCCCATGCTT 59.960 50.000 0.00 0.00 0.00 3.91
956 964 1.188863 GCTTCACCATCCCATGCTTT 58.811 50.000 0.00 0.00 0.00 3.51
957 965 1.134907 GCTTCACCATCCCATGCTTTG 60.135 52.381 0.00 0.00 0.00 2.77
958 966 2.173519 CTTCACCATCCCATGCTTTGT 58.826 47.619 0.00 0.00 0.00 2.83
959 967 2.307496 TCACCATCCCATGCTTTGTT 57.693 45.000 0.00 0.00 0.00 2.83
960 968 3.448093 TCACCATCCCATGCTTTGTTA 57.552 42.857 0.00 0.00 0.00 2.41
961 969 3.979911 TCACCATCCCATGCTTTGTTAT 58.020 40.909 0.00 0.00 0.00 1.89
962 970 4.352009 TCACCATCCCATGCTTTGTTATT 58.648 39.130 0.00 0.00 0.00 1.40
963 971 4.776837 TCACCATCCCATGCTTTGTTATTT 59.223 37.500 0.00 0.00 0.00 1.40
964 972 5.248020 TCACCATCCCATGCTTTGTTATTTT 59.752 36.000 0.00 0.00 0.00 1.82
965 973 6.438741 TCACCATCCCATGCTTTGTTATTTTA 59.561 34.615 0.00 0.00 0.00 1.52
966 974 7.125507 TCACCATCCCATGCTTTGTTATTTTAT 59.874 33.333 0.00 0.00 0.00 1.40
967 975 7.769970 CACCATCCCATGCTTTGTTATTTTATT 59.230 33.333 0.00 0.00 0.00 1.40
968 976 8.328014 ACCATCCCATGCTTTGTTATTTTATTT 58.672 29.630 0.00 0.00 0.00 1.40
969 977 8.829612 CCATCCCATGCTTTGTTATTTTATTTC 58.170 33.333 0.00 0.00 0.00 2.17
970 978 8.829612 CATCCCATGCTTTGTTATTTTATTTCC 58.170 33.333 0.00 0.00 0.00 3.13
971 979 7.911651 TCCCATGCTTTGTTATTTTATTTCCA 58.088 30.769 0.00 0.00 0.00 3.53
972 980 8.378565 TCCCATGCTTTGTTATTTTATTTCCAA 58.621 29.630 0.00 0.00 0.00 3.53
973 981 8.667463 CCCATGCTTTGTTATTTTATTTCCAAG 58.333 33.333 0.00 0.00 0.00 3.61
974 982 8.667463 CCATGCTTTGTTATTTTATTTCCAAGG 58.333 33.333 0.00 0.00 0.00 3.61
975 983 9.434420 CATGCTTTGTTATTTTATTTCCAAGGA 57.566 29.630 0.00 0.00 0.00 3.36
1314 1323 3.998672 TTCGCCTCCGCCGTTCTT 61.999 61.111 0.00 0.00 0.00 2.52
1453 1462 1.289380 GAGCTCGTTCGGGTGTTCT 59.711 57.895 0.00 0.00 0.00 3.01
1845 1925 2.493997 CACGAAAGAGCATTGTCGTC 57.506 50.000 3.05 0.00 44.38 4.20
2314 2395 8.043113 TCTTATTGATGCTGACTAGTGATGTTT 58.957 33.333 0.00 0.00 0.00 2.83
2410 2491 5.857471 TCTATTCCCTTTTTGCCATGATG 57.143 39.130 0.00 0.00 0.00 3.07
2544 2628 8.153479 TGAAATATGCACTGCGATAACTAAAT 57.847 30.769 0.00 0.00 0.00 1.40
2700 2794 5.274015 ACTTTTTGTCCCAGGGAAAAGTTA 58.726 37.500 23.53 4.37 45.10 2.24
2841 2936 0.752658 CATACACTCGCCTCATGGGA 59.247 55.000 0.00 0.00 37.23 4.37
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
220 228 2.083774 TGGAGTTGCCATCATCGAAAC 58.916 47.619 0.00 0.00 43.33 2.78
287 295 1.298602 TGCCATGATACATGCACGTC 58.701 50.000 0.00 0.00 0.00 4.34
402 410 7.826744 TGTTTACACTGAAGTTGCCATGATATA 59.173 33.333 0.00 0.00 0.00 0.86
504 512 5.679355 CACGATGAGATCTTCGAAACTAGAC 59.321 44.000 20.72 0.00 43.48 2.59
527 535 4.461081 CCGTTTTCACCATTAAATCCCTCA 59.539 41.667 0.00 0.00 0.00 3.86
644 652 9.035607 CACCACATGTCTCTAATATAAACAGAC 57.964 37.037 0.00 0.00 35.11 3.51
653 661 3.699538 AGACGCACCACATGTCTCTAATA 59.300 43.478 0.00 0.00 38.55 0.98
716 724 3.762992 CGTGCGTCATTCGTGCGT 61.763 61.111 0.00 0.00 42.13 5.24
717 725 4.483683 CCGTGCGTCATTCGTGCG 62.484 66.667 0.00 0.00 42.13 5.34
718 726 1.619526 TTACCGTGCGTCATTCGTGC 61.620 55.000 0.00 0.00 42.13 5.34
719 727 0.365523 CTTACCGTGCGTCATTCGTG 59.634 55.000 0.00 0.00 42.13 4.35
720 728 0.241749 TCTTACCGTGCGTCATTCGT 59.758 50.000 0.00 0.00 42.13 3.85
721 729 0.638746 GTCTTACCGTGCGTCATTCG 59.361 55.000 0.00 0.00 43.12 3.34
722 730 0.997196 GGTCTTACCGTGCGTCATTC 59.003 55.000 0.00 0.00 0.00 2.67
723 731 3.132863 GGTCTTACCGTGCGTCATT 57.867 52.632 0.00 0.00 0.00 2.57
724 732 4.904466 GGTCTTACCGTGCGTCAT 57.096 55.556 0.00 0.00 0.00 3.06
733 741 3.700154 GTTCGATAGGAACGGTCTTACC 58.300 50.000 0.00 0.00 45.05 2.85
744 752 9.521841 AGATAGATATCTGTTTGTTCGATAGGA 57.478 33.333 15.79 0.00 41.28 2.94
748 756 8.237949 CCGTAGATAGATATCTGTTTGTTCGAT 58.762 37.037 15.79 0.00 42.66 3.59
749 757 7.308408 CCCGTAGATAGATATCTGTTTGTTCGA 60.308 40.741 15.79 0.00 42.66 3.71
750 758 6.802348 CCCGTAGATAGATATCTGTTTGTTCG 59.198 42.308 15.79 10.13 42.66 3.95
751 759 7.659186 ACCCGTAGATAGATATCTGTTTGTTC 58.341 38.462 15.79 3.17 42.66 3.18
752 760 7.598759 ACCCGTAGATAGATATCTGTTTGTT 57.401 36.000 15.79 0.00 42.66 2.83
753 761 8.880991 ATACCCGTAGATAGATATCTGTTTGT 57.119 34.615 15.79 1.42 42.66 2.83
754 762 9.179909 AGATACCCGTAGATAGATATCTGTTTG 57.820 37.037 15.79 0.67 42.66 2.93
771 779 7.716123 GCTGTGTAGATATAGATAGATACCCGT 59.284 40.741 0.00 0.00 0.00 5.28
772 780 7.934665 AGCTGTGTAGATATAGATAGATACCCG 59.065 40.741 0.00 0.00 0.00 5.28
773 781 9.280174 GAGCTGTGTAGATATAGATAGATACCC 57.720 40.741 0.00 0.00 0.00 3.69
822 830 4.438744 CCATACACGGGAGAAATGCTTTTC 60.439 45.833 15.38 15.38 41.34 2.29
823 831 3.443681 CCATACACGGGAGAAATGCTTTT 59.556 43.478 0.00 0.00 0.00 2.27
824 832 3.016736 CCATACACGGGAGAAATGCTTT 58.983 45.455 0.00 0.00 0.00 3.51
825 833 2.643551 CCATACACGGGAGAAATGCTT 58.356 47.619 0.00 0.00 0.00 3.91
826 834 2.332063 CCATACACGGGAGAAATGCT 57.668 50.000 0.00 0.00 0.00 3.79
836 844 1.610554 AACGGACCTCCCATACACGG 61.611 60.000 0.00 0.00 34.14 4.94
837 845 0.179119 GAACGGACCTCCCATACACG 60.179 60.000 0.00 0.00 34.14 4.49
838 846 0.899720 TGAACGGACCTCCCATACAC 59.100 55.000 0.00 0.00 34.14 2.90
839 847 1.874129 ATGAACGGACCTCCCATACA 58.126 50.000 0.00 0.00 34.14 2.29
840 848 3.277142 AAATGAACGGACCTCCCATAC 57.723 47.619 0.00 0.00 34.14 2.39
841 849 4.018779 AGAAAAATGAACGGACCTCCCATA 60.019 41.667 0.00 0.00 34.14 2.74
842 850 2.899303 AAAATGAACGGACCTCCCAT 57.101 45.000 0.00 0.00 34.14 4.00
843 851 2.107552 AGAAAAATGAACGGACCTCCCA 59.892 45.455 0.00 0.00 34.14 4.37
844 852 2.791655 AGAAAAATGAACGGACCTCCC 58.208 47.619 0.00 0.00 0.00 4.30
845 853 3.057526 CCAAGAAAAATGAACGGACCTCC 60.058 47.826 0.00 0.00 0.00 4.30
846 854 3.818773 TCCAAGAAAAATGAACGGACCTC 59.181 43.478 0.00 0.00 0.00 3.85
847 855 3.821033 CTCCAAGAAAAATGAACGGACCT 59.179 43.478 0.00 0.00 0.00 3.85
848 856 3.818773 TCTCCAAGAAAAATGAACGGACC 59.181 43.478 0.00 0.00 0.00 4.46
849 857 5.629079 ATCTCCAAGAAAAATGAACGGAC 57.371 39.130 0.00 0.00 0.00 4.79
850 858 5.106712 CGAATCTCCAAGAAAAATGAACGGA 60.107 40.000 0.00 0.00 0.00 4.69
851 859 5.088739 CGAATCTCCAAGAAAAATGAACGG 58.911 41.667 0.00 0.00 0.00 4.44
852 860 5.927030 TCGAATCTCCAAGAAAAATGAACG 58.073 37.500 0.00 0.00 0.00 3.95
853 861 7.308435 ACATCGAATCTCCAAGAAAAATGAAC 58.692 34.615 0.00 0.00 0.00 3.18
854 862 7.452880 ACATCGAATCTCCAAGAAAAATGAA 57.547 32.000 0.00 0.00 0.00 2.57
855 863 7.040478 ACAACATCGAATCTCCAAGAAAAATGA 60.040 33.333 0.00 0.00 0.00 2.57
856 864 7.061441 CACAACATCGAATCTCCAAGAAAAATG 59.939 37.037 0.00 0.00 0.00 2.32
857 865 7.086376 CACAACATCGAATCTCCAAGAAAAAT 58.914 34.615 0.00 0.00 0.00 1.82
858 866 6.437928 CACAACATCGAATCTCCAAGAAAAA 58.562 36.000 0.00 0.00 0.00 1.94
859 867 5.562696 GCACAACATCGAATCTCCAAGAAAA 60.563 40.000 0.00 0.00 0.00 2.29
860 868 4.083324 GCACAACATCGAATCTCCAAGAAA 60.083 41.667 0.00 0.00 0.00 2.52
861 869 3.436704 GCACAACATCGAATCTCCAAGAA 59.563 43.478 0.00 0.00 0.00 2.52
862 870 3.002791 GCACAACATCGAATCTCCAAGA 58.997 45.455 0.00 0.00 0.00 3.02
863 871 2.222886 CGCACAACATCGAATCTCCAAG 60.223 50.000 0.00 0.00 0.00 3.61
864 872 1.731709 CGCACAACATCGAATCTCCAA 59.268 47.619 0.00 0.00 0.00 3.53
865 873 1.337728 ACGCACAACATCGAATCTCCA 60.338 47.619 0.00 0.00 0.00 3.86
866 874 1.359848 ACGCACAACATCGAATCTCC 58.640 50.000 0.00 0.00 0.00 3.71
867 875 4.577687 TTAACGCACAACATCGAATCTC 57.422 40.909 0.00 0.00 0.00 2.75
868 876 4.727734 GCATTAACGCACAACATCGAATCT 60.728 41.667 0.00 0.00 0.00 2.40
869 877 3.478516 GCATTAACGCACAACATCGAATC 59.521 43.478 0.00 0.00 0.00 2.52
870 878 3.126858 AGCATTAACGCACAACATCGAAT 59.873 39.130 0.00 0.00 0.00 3.34
871 879 2.482336 AGCATTAACGCACAACATCGAA 59.518 40.909 0.00 0.00 0.00 3.71
872 880 2.073056 AGCATTAACGCACAACATCGA 58.927 42.857 0.00 0.00 0.00 3.59
873 881 2.094258 AGAGCATTAACGCACAACATCG 59.906 45.455 0.00 0.00 0.00 3.84
874 882 3.747099 AGAGCATTAACGCACAACATC 57.253 42.857 0.00 0.00 0.00 3.06
875 883 4.229096 CAAAGAGCATTAACGCACAACAT 58.771 39.130 0.00 0.00 0.00 2.71
876 884 3.066064 ACAAAGAGCATTAACGCACAACA 59.934 39.130 0.00 0.00 0.00 3.33
877 885 3.628017 ACAAAGAGCATTAACGCACAAC 58.372 40.909 0.00 0.00 0.00 3.32
878 886 3.980646 ACAAAGAGCATTAACGCACAA 57.019 38.095 0.00 0.00 0.00 3.33
879 887 4.062293 ACTACAAAGAGCATTAACGCACA 58.938 39.130 0.00 0.00 0.00 4.57
880 888 4.663636 ACTACAAAGAGCATTAACGCAC 57.336 40.909 0.00 0.00 0.00 5.34
881 889 5.008217 ACAAACTACAAAGAGCATTAACGCA 59.992 36.000 0.00 0.00 0.00 5.24
882 890 5.449304 ACAAACTACAAAGAGCATTAACGC 58.551 37.500 0.00 0.00 0.00 4.84
883 891 6.655062 TGACAAACTACAAAGAGCATTAACG 58.345 36.000 0.00 0.00 0.00 3.18
884 892 7.861630 TCTGACAAACTACAAAGAGCATTAAC 58.138 34.615 0.00 0.00 0.00 2.01
885 893 8.621532 ATCTGACAAACTACAAAGAGCATTAA 57.378 30.769 0.00 0.00 0.00 1.40
886 894 8.097038 AGATCTGACAAACTACAAAGAGCATTA 58.903 33.333 0.00 0.00 0.00 1.90
887 895 6.939163 AGATCTGACAAACTACAAAGAGCATT 59.061 34.615 0.00 0.00 0.00 3.56
888 896 6.471146 AGATCTGACAAACTACAAAGAGCAT 58.529 36.000 0.00 0.00 0.00 3.79
889 897 5.858381 AGATCTGACAAACTACAAAGAGCA 58.142 37.500 0.00 0.00 0.00 4.26
890 898 6.128418 GGAAGATCTGACAAACTACAAAGAGC 60.128 42.308 0.00 0.00 0.00 4.09
891 899 7.158021 AGGAAGATCTGACAAACTACAAAGAG 58.842 38.462 0.00 0.00 0.00 2.85
892 900 7.015682 AGAGGAAGATCTGACAAACTACAAAGA 59.984 37.037 0.00 0.00 0.00 2.52
893 901 7.158021 AGAGGAAGATCTGACAAACTACAAAG 58.842 38.462 0.00 0.00 0.00 2.77
894 902 7.067496 AGAGGAAGATCTGACAAACTACAAA 57.933 36.000 0.00 0.00 0.00 2.83
895 903 6.672266 AGAGGAAGATCTGACAAACTACAA 57.328 37.500 0.00 0.00 0.00 2.41
906 914 3.794717 CATGTGGTCAGAGGAAGATCTG 58.205 50.000 0.00 0.00 46.70 2.90
907 915 2.170187 GCATGTGGTCAGAGGAAGATCT 59.830 50.000 0.00 0.00 0.00 2.75
908 916 2.093288 TGCATGTGGTCAGAGGAAGATC 60.093 50.000 0.00 0.00 0.00 2.75
909 917 1.911357 TGCATGTGGTCAGAGGAAGAT 59.089 47.619 0.00 0.00 0.00 2.40
910 918 1.351076 TGCATGTGGTCAGAGGAAGA 58.649 50.000 0.00 0.00 0.00 2.87
911 919 2.082231 CTTGCATGTGGTCAGAGGAAG 58.918 52.381 0.00 0.00 0.00 3.46
912 920 1.883638 GCTTGCATGTGGTCAGAGGAA 60.884 52.381 1.14 0.00 0.00 3.36
913 921 0.321919 GCTTGCATGTGGTCAGAGGA 60.322 55.000 1.14 0.00 0.00 3.71
914 922 0.607217 TGCTTGCATGTGGTCAGAGG 60.607 55.000 1.14 0.00 0.00 3.69
915 923 1.460504 ATGCTTGCATGTGGTCAGAG 58.539 50.000 7.35 0.00 0.00 3.35
916 924 2.785540 TATGCTTGCATGTGGTCAGA 57.214 45.000 17.26 0.00 0.00 3.27
917 925 2.543031 GCATATGCTTGCATGTGGTCAG 60.543 50.000 25.65 7.92 42.31 3.51
918 926 1.406180 GCATATGCTTGCATGTGGTCA 59.594 47.619 25.65 5.45 42.31 4.02
919 927 2.129823 GCATATGCTTGCATGTGGTC 57.870 50.000 25.65 12.13 42.31 4.02
931 939 1.985473 TGGGATGGTGAAGCATATGC 58.015 50.000 20.36 20.36 42.49 3.14
932 940 2.230508 GCATGGGATGGTGAAGCATATG 59.769 50.000 0.00 0.00 0.00 1.78
933 941 2.109480 AGCATGGGATGGTGAAGCATAT 59.891 45.455 0.00 0.00 39.92 1.78
934 942 1.496001 AGCATGGGATGGTGAAGCATA 59.504 47.619 0.00 0.00 39.92 3.14
935 943 0.260816 AGCATGGGATGGTGAAGCAT 59.739 50.000 0.00 0.00 39.92 3.79
936 944 0.040058 AAGCATGGGATGGTGAAGCA 59.960 50.000 0.00 0.00 41.46 3.91
937 945 1.134907 CAAAGCATGGGATGGTGAAGC 60.135 52.381 0.00 0.00 41.46 3.86
938 946 2.173519 ACAAAGCATGGGATGGTGAAG 58.826 47.619 0.00 0.00 41.46 3.02
939 947 2.307496 ACAAAGCATGGGATGGTGAA 57.693 45.000 0.00 0.00 41.46 3.18
940 948 2.307496 AACAAAGCATGGGATGGTGA 57.693 45.000 0.00 0.00 41.46 4.02
941 949 4.741321 AATAACAAAGCATGGGATGGTG 57.259 40.909 0.00 0.00 41.46 4.17
942 950 5.760484 AAAATAACAAAGCATGGGATGGT 57.240 34.783 0.00 0.00 43.93 3.55
943 951 8.735692 AAATAAAATAACAAAGCATGGGATGG 57.264 30.769 0.00 0.00 0.00 3.51
944 952 8.829612 GGAAATAAAATAACAAAGCATGGGATG 58.170 33.333 0.00 0.00 0.00 3.51
945 953 8.547173 TGGAAATAAAATAACAAAGCATGGGAT 58.453 29.630 0.00 0.00 0.00 3.85
946 954 7.911651 TGGAAATAAAATAACAAAGCATGGGA 58.088 30.769 0.00 0.00 0.00 4.37
947 955 8.558973 TTGGAAATAAAATAACAAAGCATGGG 57.441 30.769 0.00 0.00 0.00 4.00
948 956 8.667463 CCTTGGAAATAAAATAACAAAGCATGG 58.333 33.333 0.00 0.00 0.00 3.66
949 957 9.434420 TCCTTGGAAATAAAATAACAAAGCATG 57.566 29.630 0.00 0.00 0.00 4.06
987 995 9.944663 GTTGCCAAATACATATTTCGAAAGATA 57.055 29.630 17.01 5.73 41.60 1.98
988 996 7.920682 GGTTGCCAAATACATATTTCGAAAGAT 59.079 33.333 16.80 14.43 41.60 2.40
989 997 7.254852 GGTTGCCAAATACATATTTCGAAAGA 58.745 34.615 16.80 12.52 33.88 2.52
990 998 6.475402 GGGTTGCCAAATACATATTTCGAAAG 59.525 38.462 16.80 5.44 33.88 2.62
991 999 6.153680 AGGGTTGCCAAATACATATTTCGAAA 59.846 34.615 13.91 13.91 33.88 3.46
992 1000 5.654650 AGGGTTGCCAAATACATATTTCGAA 59.345 36.000 0.00 0.00 33.88 3.71
993 1001 5.067153 CAGGGTTGCCAAATACATATTTCGA 59.933 40.000 0.00 0.00 33.88 3.71
1165 1174 2.214181 GAGGCGAGCGACTTGGAGAA 62.214 60.000 0.00 0.00 30.74 2.87
1251 1260 1.590147 GTCCAAGATCCGGTCGTGT 59.410 57.895 0.00 0.00 34.93 4.49
1401 1410 4.007644 CCCCTGTCGCTGCACAGA 62.008 66.667 24.15 3.22 45.92 3.41
1443 1452 4.771127 GTGCTGAAGAACACCCGA 57.229 55.556 0.00 0.00 0.00 5.14
1453 1462 4.980805 GGCGACGGTGGTGCTGAA 62.981 66.667 0.00 0.00 0.00 3.02
1731 1811 0.250553 CCAGCACAAACCTCCGGTTA 60.251 55.000 0.00 0.00 46.20 2.85
2410 2491 7.887996 TCAATTCATATTTGCTTTTCCACAC 57.112 32.000 0.00 0.00 0.00 3.82
2544 2628 5.413213 CACGGGTCAAAAACTTATCATGGTA 59.587 40.000 0.00 0.00 0.00 3.25
2700 2794 8.100164 ACAAAAATTATCGGGGATGTTTTGAAT 58.900 29.630 19.46 6.34 35.58 2.57
2841 2936 4.202357 TGTGTTGTGTTCATCTAAGAGGCT 60.202 41.667 0.00 0.00 0.00 4.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.