Multiple sequence alignment - TraesCS3A01G078500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G078500 chr3A 100.000 5930 0 0 569 6498 50752338 50746409 0.000000e+00 10951.0
1 TraesCS3A01G078500 chr3A 100.000 313 0 0 1 313 50752906 50752594 4.370000e-161 579.0
2 TraesCS3A01G078500 chr3A 92.000 200 13 2 4060 4257 50748636 50748438 1.780000e-70 278.0
3 TraesCS3A01G078500 chr3A 92.000 200 13 2 4271 4469 50748847 50748650 1.780000e-70 278.0
4 TraesCS3A01G078500 chr3A 96.809 94 3 0 569 662 50752224 50752131 2.430000e-34 158.0
5 TraesCS3A01G078500 chr3A 96.809 94 3 0 683 776 50752338 50752245 2.430000e-34 158.0
6 TraesCS3A01G078500 chr3A 91.176 102 5 4 3769 3870 22230723 22230626 1.140000e-27 135.0
7 TraesCS3A01G078500 chr3D 94.023 3664 128 28 2714 6324 39338645 39335020 0.000000e+00 5469.0
8 TraesCS3A01G078500 chr3D 92.360 1479 74 16 1141 2587 39340112 39338641 0.000000e+00 2069.0
9 TraesCS3A01G078500 chr3D 90.764 314 24 3 1 313 39341258 39340949 1.300000e-111 414.0
10 TraesCS3A01G078500 chr3D 87.407 270 13 8 774 1038 39340683 39340430 2.290000e-74 291.0
11 TraesCS3A01G078500 chr3D 90.187 214 17 3 4047 4257 39337095 39336883 6.420000e-70 276.0
12 TraesCS3A01G078500 chr3D 94.886 176 8 1 6324 6498 39334892 39334717 2.310000e-69 274.0
13 TraesCS3A01G078500 chr3D 90.500 200 16 2 4271 4469 39337293 39337096 1.800000e-65 261.0
14 TraesCS3A01G078500 chr3B 92.926 3647 138 56 2714 6300 62395350 62391764 0.000000e+00 5195.0
15 TraesCS3A01G078500 chr3B 92.278 1839 81 18 787 2587 62397161 62395346 0.000000e+00 2553.0
16 TraesCS3A01G078500 chr3B 92.357 314 19 3 1 313 62397776 62397467 5.980000e-120 442.0
17 TraesCS3A01G078500 chr3B 91.414 198 14 2 4271 4467 62393986 62393791 1.070000e-67 268.0
18 TraesCS3A01G078500 chr3B 88.940 217 21 3 4043 4257 62393793 62393578 1.390000e-66 265.0
19 TraesCS3A01G078500 chr3B 91.139 79 4 1 6421 6496 62391674 62391596 3.200000e-18 104.0
20 TraesCS3A01G078500 chr2D 97.258 547 11 1 3066 3608 13706993 13707539 0.000000e+00 924.0
21 TraesCS3A01G078500 chr2D 91.919 99 5 3 3772 3870 128890638 128890733 1.140000e-27 135.0
22 TraesCS3A01G078500 chr2D 100.000 30 0 0 2075 2104 643265874 643265903 1.000000e-03 56.5
23 TraesCS3A01G078500 chr5D 97.059 136 4 0 2584 2719 312069128 312068993 5.070000e-56 230.0
24 TraesCS3A01G078500 chr6B 96.324 136 5 0 2583 2718 93565729 93565864 2.360000e-54 224.0
25 TraesCS3A01G078500 chr6B 94.776 134 6 1 2586 2719 82333011 82332879 2.370000e-49 207.0
26 TraesCS3A01G078500 chr6B 94.030 134 7 1 2586 2719 82424395 82424263 1.100000e-47 202.0
27 TraesCS3A01G078500 chr6B 91.089 101 7 2 3770 3870 512256532 512256630 1.140000e-27 135.0
28 TraesCS3A01G078500 chr4B 95.620 137 6 0 2583 2719 450479637 450479773 3.050000e-53 220.0
29 TraesCS3A01G078500 chr7B 93.525 139 9 0 2584 2722 440194288 440194426 2.370000e-49 207.0
30 TraesCS3A01G078500 chr7B 94.697 132 5 1 2586 2715 744275336 744275205 3.070000e-48 204.0
31 TraesCS3A01G078500 chr4A 94.074 135 8 0 2583 2717 690934390 690934524 8.540000e-49 206.0
32 TraesCS3A01G078500 chr1B 93.985 133 8 0 2589 2721 249207455 249207323 1.100000e-47 202.0
33 TraesCS3A01G078500 chr1B 92.000 100 6 2 3767 3866 7292077 7291980 8.790000e-29 139.0
34 TraesCS3A01G078500 chr6A 88.696 115 10 3 3767 3881 584511452 584511341 3.160000e-28 137.0
35 TraesCS3A01G078500 chr5B 90.476 105 6 4 3773 3876 184285349 184285248 1.140000e-27 135.0
36 TraesCS3A01G078500 chr1A 87.826 115 11 3 3767 3881 505489873 505489762 1.470000e-26 132.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G078500 chr3A 50746409 50752906 6497 True 2067.000000 10951 96.269667 1 6498 6 chr3A.!!$R2 6497
1 TraesCS3A01G078500 chr3D 39334717 39341258 6541 True 1293.428571 5469 91.446714 1 6498 7 chr3D.!!$R1 6497
2 TraesCS3A01G078500 chr3B 62391596 62397776 6180 True 1471.166667 5195 91.509000 1 6496 6 chr3B.!!$R1 6495
3 TraesCS3A01G078500 chr2D 13706993 13707539 546 False 924.000000 924 97.258000 3066 3608 1 chr2D.!!$F1 542

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
658 660 0.738975 TCTACTGACTCGGCCATTCG 59.261 55.000 2.24 0.0 0.00 3.34 F
2598 2931 0.038310 AGTCTAAGGGGCTGTTTGGC 59.962 55.000 0.00 0.0 40.96 4.52 F
2684 3017 0.180406 ATTTACCCGCTCCGCAGATT 59.820 50.000 0.00 0.0 0.00 2.40 F
2685 3018 0.461339 TTTACCCGCTCCGCAGATTC 60.461 55.000 0.00 0.0 0.00 2.52 F
2712 3045 0.746923 GGACCATTACCGAACAGGGC 60.747 60.000 0.00 0.0 46.96 5.19 F
2715 3048 0.834612 CCATTACCGAACAGGGCCTA 59.165 55.000 5.28 0.0 46.96 3.93 F
4263 4618 1.281867 TGGATGTGAAGGGACATGGTC 59.718 52.381 0.00 0.0 36.67 4.02 F
5083 5453 0.036765 TAGCCAAAGTCGCGGATGTT 60.037 50.000 6.13 0.0 0.00 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2632 2965 0.321298 TTTTGACCTACAGCTCCGCC 60.321 55.000 0.00 0.00 0.00 6.13 R
4534 4891 3.648339 TGCAATCAAAACAGGAGCTTC 57.352 42.857 0.00 0.00 0.00 3.86 R
4681 5050 4.611564 AGACACCTTAGGATCCTAGTGT 57.388 45.455 31.95 31.95 39.22 3.55 R
4682 5051 7.604657 AATAAGACACCTTAGGATCCTAGTG 57.395 40.000 27.65 27.65 38.19 2.74 R
4683 5052 8.625467 AAAATAAGACACCTTAGGATCCTAGT 57.375 34.615 20.72 15.26 38.19 2.57 R
4851 5221 9.685005 CTTTAATTCCGTAAAAGTACTGAATCG 57.315 33.333 0.00 0.00 40.96 3.34 R
5229 5599 0.398696 TAGGCCGGAACAACATGTGT 59.601 50.000 5.05 0.00 44.64 3.72 R
5897 6294 0.727398 GCCAGACCATAGCACGTTTC 59.273 55.000 0.00 0.00 0.00 2.78 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 72 3.971032 AAAAAGCGACAGAAGACAAGG 57.029 42.857 0.00 0.00 0.00 3.61
106 108 3.134574 TGGAGCTTTATGACGGTTGTT 57.865 42.857 0.00 0.00 0.00 2.83
123 125 6.093771 ACGGTTGTTAGATCTAGAGTGTGTAG 59.906 42.308 2.02 0.00 0.00 2.74
132 134 7.120051 AGATCTAGAGTGTGTAGTGGTGTAAT 58.880 38.462 0.00 0.00 0.00 1.89
133 135 7.616150 AGATCTAGAGTGTGTAGTGGTGTAATT 59.384 37.037 0.00 0.00 0.00 1.40
134 136 7.534723 TCTAGAGTGTGTAGTGGTGTAATTT 57.465 36.000 0.00 0.00 0.00 1.82
135 137 8.640063 TCTAGAGTGTGTAGTGGTGTAATTTA 57.360 34.615 0.00 0.00 0.00 1.40
136 138 8.517878 TCTAGAGTGTGTAGTGGTGTAATTTAC 58.482 37.037 0.00 0.00 0.00 2.01
137 139 6.154445 AGAGTGTGTAGTGGTGTAATTTACG 58.846 40.000 2.30 0.00 0.00 3.18
139 141 6.514947 AGTGTGTAGTGGTGTAATTTACGAA 58.485 36.000 2.30 0.00 0.00 3.85
140 142 6.643770 AGTGTGTAGTGGTGTAATTTACGAAG 59.356 38.462 2.30 0.00 0.00 3.79
142 144 7.169645 GTGTGTAGTGGTGTAATTTACGAAGAA 59.830 37.037 2.30 0.00 0.00 2.52
143 145 7.383029 TGTGTAGTGGTGTAATTTACGAAGAAG 59.617 37.037 2.30 0.00 0.00 2.85
145 147 4.387862 AGTGGTGTAATTTACGAAGAAGCG 59.612 41.667 2.30 0.00 37.29 4.68
182 184 6.874664 GGTGGCTCCTATTTAGCTTAGTATTC 59.125 42.308 0.00 0.00 39.97 1.75
190 192 8.429641 CCTATTTAGCTTAGTATTCCTGGTTCA 58.570 37.037 0.00 0.00 0.00 3.18
235 237 5.097742 TGACAAAACTGAGTGAAGGAAGA 57.902 39.130 0.00 0.00 0.00 2.87
255 257 6.294176 GGAAGATGCACATGTTACTTTTGTCT 60.294 38.462 0.00 0.00 0.00 3.41
263 265 7.651704 GCACATGTTACTTTTGTCTGGTTTATT 59.348 33.333 0.00 0.00 0.00 1.40
273 275 3.159472 GTCTGGTTTATTTTCCGGGGTT 58.841 45.455 0.00 0.00 0.00 4.11
275 277 4.039488 GTCTGGTTTATTTTCCGGGGTTTT 59.961 41.667 0.00 0.00 0.00 2.43
301 303 3.820467 TCCGATTCAAAATGCTCAACACT 59.180 39.130 0.00 0.00 0.00 3.55
589 591 3.570540 AGCTATCCACTCAGTGCTATCA 58.429 45.455 0.00 0.00 31.34 2.15
590 592 4.158786 AGCTATCCACTCAGTGCTATCAT 58.841 43.478 0.00 0.00 31.34 2.45
591 593 4.021280 AGCTATCCACTCAGTGCTATCATG 60.021 45.833 0.00 0.00 31.34 3.07
592 594 4.262377 GCTATCCACTCAGTGCTATCATGT 60.262 45.833 0.00 0.00 31.34 3.21
593 595 3.808466 TCCACTCAGTGCTATCATGTC 57.192 47.619 0.00 0.00 31.34 3.06
594 596 2.432146 TCCACTCAGTGCTATCATGTCC 59.568 50.000 0.00 0.00 31.34 4.02
595 597 2.484417 CCACTCAGTGCTATCATGTCCC 60.484 54.545 0.00 0.00 31.34 4.46
596 598 1.765314 ACTCAGTGCTATCATGTCCCC 59.235 52.381 0.00 0.00 0.00 4.81
597 599 1.764723 CTCAGTGCTATCATGTCCCCA 59.235 52.381 0.00 0.00 0.00 4.96
598 600 2.371179 CTCAGTGCTATCATGTCCCCAT 59.629 50.000 0.00 0.00 0.00 4.00
599 601 2.369860 TCAGTGCTATCATGTCCCCATC 59.630 50.000 0.00 0.00 0.00 3.51
600 602 1.345741 AGTGCTATCATGTCCCCATCG 59.654 52.381 0.00 0.00 0.00 3.84
601 603 1.344438 GTGCTATCATGTCCCCATCGA 59.656 52.381 0.00 0.00 0.00 3.59
602 604 1.344438 TGCTATCATGTCCCCATCGAC 59.656 52.381 0.00 0.00 0.00 4.20
603 605 1.620819 GCTATCATGTCCCCATCGACT 59.379 52.381 0.00 0.00 33.70 4.18
604 606 2.826128 GCTATCATGTCCCCATCGACTA 59.174 50.000 0.00 0.00 33.70 2.59
605 607 3.367498 GCTATCATGTCCCCATCGACTAC 60.367 52.174 0.00 0.00 33.70 2.73
606 608 1.029681 TCATGTCCCCATCGACTACG 58.970 55.000 0.00 0.00 41.26 3.51
620 622 3.864003 TCGACTACGAGATATCTATGGCG 59.136 47.826 4.89 9.97 43.81 5.69
621 623 3.864003 CGACTACGAGATATCTATGGCGA 59.136 47.826 15.98 2.52 42.66 5.54
622 624 4.259890 CGACTACGAGATATCTATGGCGAC 60.260 50.000 15.98 0.00 42.66 5.19
623 625 4.834534 ACTACGAGATATCTATGGCGACT 58.165 43.478 15.98 0.73 0.00 4.18
624 626 5.247084 ACTACGAGATATCTATGGCGACTT 58.753 41.667 15.98 0.00 0.00 3.01
625 627 4.688511 ACGAGATATCTATGGCGACTTC 57.311 45.455 15.98 0.00 0.00 3.01
626 628 4.072839 ACGAGATATCTATGGCGACTTCA 58.927 43.478 15.98 0.00 0.00 3.02
627 629 4.702612 ACGAGATATCTATGGCGACTTCAT 59.297 41.667 15.98 0.00 0.00 2.57
628 630 5.163703 ACGAGATATCTATGGCGACTTCATC 60.164 44.000 15.98 0.00 0.00 2.92
629 631 5.163713 CGAGATATCTATGGCGACTTCATCA 60.164 44.000 4.89 0.00 0.00 3.07
630 632 6.596309 AGATATCTATGGCGACTTCATCAA 57.404 37.500 2.53 0.00 0.00 2.57
631 633 7.180322 AGATATCTATGGCGACTTCATCAAT 57.820 36.000 2.53 0.00 0.00 2.57
632 634 7.619050 AGATATCTATGGCGACTTCATCAATT 58.381 34.615 2.53 0.00 0.00 2.32
633 635 8.099537 AGATATCTATGGCGACTTCATCAATTT 58.900 33.333 2.53 0.00 0.00 1.82
634 636 5.991328 TCTATGGCGACTTCATCAATTTC 57.009 39.130 0.00 0.00 0.00 2.17
635 637 5.427378 TCTATGGCGACTTCATCAATTTCA 58.573 37.500 0.00 0.00 0.00 2.69
636 638 5.879777 TCTATGGCGACTTCATCAATTTCAA 59.120 36.000 0.00 0.00 0.00 2.69
637 639 4.844998 TGGCGACTTCATCAATTTCAAA 57.155 36.364 0.00 0.00 0.00 2.69
638 640 5.193663 TGGCGACTTCATCAATTTCAAAA 57.806 34.783 0.00 0.00 0.00 2.44
639 641 5.782047 TGGCGACTTCATCAATTTCAAAAT 58.218 33.333 0.00 0.00 0.00 1.82
640 642 5.863397 TGGCGACTTCATCAATTTCAAAATC 59.137 36.000 0.00 0.00 0.00 2.17
641 643 6.095377 GGCGACTTCATCAATTTCAAAATCT 58.905 36.000 0.00 0.00 0.00 2.40
642 644 7.094420 TGGCGACTTCATCAATTTCAAAATCTA 60.094 33.333 0.00 0.00 0.00 1.98
643 645 7.218963 GGCGACTTCATCAATTTCAAAATCTAC 59.781 37.037 0.00 0.00 0.00 2.59
644 646 7.965107 GCGACTTCATCAATTTCAAAATCTACT 59.035 33.333 0.00 0.00 0.00 2.57
645 647 9.270576 CGACTTCATCAATTTCAAAATCTACTG 57.729 33.333 0.00 0.00 0.00 2.74
650 652 8.659491 TCATCAATTTCAAAATCTACTGACTCG 58.341 33.333 0.00 0.00 0.00 4.18
651 653 7.364522 TCAATTTCAAAATCTACTGACTCGG 57.635 36.000 0.00 0.00 0.00 4.63
652 654 5.803020 ATTTCAAAATCTACTGACTCGGC 57.197 39.130 0.00 0.00 0.00 5.54
653 655 3.247006 TCAAAATCTACTGACTCGGCC 57.753 47.619 0.00 0.00 0.00 6.13
654 656 2.565391 TCAAAATCTACTGACTCGGCCA 59.435 45.455 2.24 0.00 0.00 5.36
658 660 0.738975 TCTACTGACTCGGCCATTCG 59.261 55.000 2.24 0.00 0.00 3.34
682 714 3.735704 TGGCACAAATCTTTCGGGA 57.264 47.368 0.00 0.00 31.92 5.14
683 715 1.533625 TGGCACAAATCTTTCGGGAG 58.466 50.000 0.00 0.00 31.92 4.30
751 783 4.844998 TGGCGACTTCATCAATTTCAAA 57.155 36.364 0.00 0.00 0.00 2.69
809 889 1.930567 CGGTTCCACTATGTTACCGG 58.069 55.000 0.00 0.00 45.88 5.28
818 898 4.094442 CCACTATGTTACCGGAAAAAGAGC 59.906 45.833 9.46 0.00 0.00 4.09
828 908 1.668237 GGAAAAAGAGCGAGATGGAGC 59.332 52.381 0.00 0.00 0.00 4.70
891 971 4.489771 CGGTGGACCCAGCCCATC 62.490 72.222 12.10 0.00 40.93 3.51
892 972 4.129148 GGTGGACCCAGCCCATCC 62.129 72.222 6.98 0.00 38.38 3.51
893 973 3.338250 GTGGACCCAGCCCATCCA 61.338 66.667 0.00 0.00 40.27 3.41
940 1024 3.103911 CTTCCGTGCGTCGTGTCC 61.104 66.667 0.00 0.00 37.94 4.02
977 1061 2.835156 AGGGGAAAAGAGAGCTCTGTAC 59.165 50.000 23.91 12.02 40.36 2.90
979 1063 2.835156 GGGAAAAGAGAGCTCTGTACCT 59.165 50.000 23.91 9.12 40.36 3.08
980 1064 3.118920 GGGAAAAGAGAGCTCTGTACCTC 60.119 52.174 23.91 13.79 40.36 3.85
981 1065 3.767131 GGAAAAGAGAGCTCTGTACCTCT 59.233 47.826 23.91 8.14 40.36 3.69
982 1066 4.951094 GGAAAAGAGAGCTCTGTACCTCTA 59.049 45.833 23.91 0.00 40.36 2.43
983 1067 5.163591 GGAAAAGAGAGCTCTGTACCTCTAC 60.164 48.000 23.91 2.72 40.36 2.59
984 1068 3.570912 AGAGAGCTCTGTACCTCTACC 57.429 52.381 23.91 1.88 38.48 3.18
985 1069 3.120108 AGAGAGCTCTGTACCTCTACCT 58.880 50.000 23.91 4.56 38.48 3.08
986 1070 3.135895 AGAGAGCTCTGTACCTCTACCTC 59.864 52.174 23.91 1.39 38.48 3.85
987 1071 3.120108 AGAGCTCTGTACCTCTACCTCT 58.880 50.000 17.42 0.00 36.70 3.69
988 1072 4.300345 AGAGCTCTGTACCTCTACCTCTA 58.700 47.826 17.42 0.00 36.70 2.43
989 1073 4.102054 AGAGCTCTGTACCTCTACCTCTAC 59.898 50.000 17.42 0.00 36.70 2.59
990 1074 3.136992 AGCTCTGTACCTCTACCTCTACC 59.863 52.174 0.00 0.00 0.00 3.18
991 1075 3.136992 GCTCTGTACCTCTACCTCTACCT 59.863 52.174 0.00 0.00 0.00 3.08
992 1076 4.744563 GCTCTGTACCTCTACCTCTACCTC 60.745 54.167 0.00 0.00 0.00 3.85
1018 1102 0.593128 CATCCGCCATTCGATTTCCC 59.407 55.000 0.00 0.00 41.67 3.97
1035 1119 1.152917 TCCCTGCTCCTATCCATCCAT 59.847 52.381 0.00 0.00 0.00 3.41
1038 1122 2.236644 CCTGCTCCTATCCATCCATCAG 59.763 54.545 0.00 0.00 0.00 2.90
1039 1123 3.171528 CTGCTCCTATCCATCCATCAGA 58.828 50.000 0.00 0.00 0.00 3.27
1041 1125 3.581770 TGCTCCTATCCATCCATCAGAAG 59.418 47.826 0.00 0.00 0.00 2.85
1042 1126 3.837146 GCTCCTATCCATCCATCAGAAGA 59.163 47.826 0.00 0.00 0.00 2.87
1043 1127 4.081531 GCTCCTATCCATCCATCAGAAGAG 60.082 50.000 0.00 0.00 0.00 2.85
1045 1129 3.055240 CCTATCCATCCATCAGAAGAGGC 60.055 52.174 0.00 0.00 0.00 4.70
1046 1130 2.187239 TCCATCCATCAGAAGAGGCT 57.813 50.000 0.00 0.00 0.00 4.58
1047 1131 2.045524 TCCATCCATCAGAAGAGGCTC 58.954 52.381 6.34 6.34 0.00 4.70
1138 1241 3.419759 CACGCACGGTAAGCACCC 61.420 66.667 0.00 0.00 42.43 4.61
1226 1525 2.092484 TGCTCAAATCAATCGATCCCCA 60.092 45.455 0.00 0.00 0.00 4.96
1256 1557 2.731348 GATTAGGGCGAGCGAGCG 60.731 66.667 0.00 0.00 38.18 5.03
1307 1608 3.934962 GATGGCTCCCCTCGCTCC 61.935 72.222 0.00 0.00 0.00 4.70
1558 1880 2.743718 CCCGTGACTGGCAAGAGT 59.256 61.111 0.00 0.00 0.00 3.24
1616 1938 4.521062 CCGGAGAAGAGGGCGCAG 62.521 72.222 10.83 0.00 0.00 5.18
1617 1939 3.452786 CGGAGAAGAGGGCGCAGA 61.453 66.667 10.83 0.00 0.00 4.26
1618 1940 2.982130 GGAGAAGAGGGCGCAGAA 59.018 61.111 10.83 0.00 0.00 3.02
1690 2012 3.256960 TTCAAGCTCGGCCCCCTT 61.257 61.111 0.00 0.00 0.00 3.95
1832 2154 0.836606 TTGCTTGTGTCCTGACTGGA 59.163 50.000 0.00 0.00 43.86 3.86
1884 2207 0.605319 CACGCTTTAAGGACTGCCCA 60.605 55.000 0.00 0.00 37.41 5.36
1921 2244 1.304217 GAGGGGATCGAGCCGGATA 60.304 63.158 14.60 0.00 0.00 2.59
1959 2282 0.172578 TCGATCGCTTCATTGACGGT 59.827 50.000 11.09 0.00 0.00 4.83
1991 2314 1.134877 CAAGAGATCGCTTGCTGGAGA 60.135 52.381 23.51 0.00 38.85 3.71
1992 2315 1.189752 AGAGATCGCTTGCTGGAGAA 58.810 50.000 0.00 0.00 0.00 2.87
1993 2316 1.552337 AGAGATCGCTTGCTGGAGAAA 59.448 47.619 0.00 0.00 0.00 2.52
1994 2317 1.932511 GAGATCGCTTGCTGGAGAAAG 59.067 52.381 0.00 0.00 33.72 2.62
2009 2332 1.228245 AAAGCAAGGAAGCAGCGGA 60.228 52.632 0.00 0.00 36.85 5.54
2431 2763 3.129638 GCAACCTATGAAATAAACCGCCA 59.870 43.478 0.00 0.00 0.00 5.69
2440 2772 4.770010 TGAAATAAACCGCCAGGAGAAAAT 59.230 37.500 0.00 0.00 41.02 1.82
2481 2814 2.548057 TCTGTGCCGCTAGAACTTTTTG 59.452 45.455 0.00 0.00 0.00 2.44
2536 2869 7.498570 CCTTGGATCTCCTGAGAATAAAGAAAG 59.501 40.741 0.20 0.21 41.36 2.62
2585 2918 6.463049 GCTCTGCATAACCCATTCTAGTCTAA 60.463 42.308 0.00 0.00 0.00 2.10
2586 2919 7.055667 TCTGCATAACCCATTCTAGTCTAAG 57.944 40.000 0.00 0.00 0.00 2.18
2587 2920 6.042093 TCTGCATAACCCATTCTAGTCTAAGG 59.958 42.308 0.00 0.00 0.00 2.69
2588 2921 5.071788 TGCATAACCCATTCTAGTCTAAGGG 59.928 44.000 0.00 0.00 42.07 3.95
2591 2924 2.695585 CCCATTCTAGTCTAAGGGGCT 58.304 52.381 0.00 0.00 40.74 5.19
2592 2925 2.370189 CCCATTCTAGTCTAAGGGGCTG 59.630 54.545 0.00 0.00 40.74 4.85
2593 2926 3.041946 CCATTCTAGTCTAAGGGGCTGT 58.958 50.000 0.00 0.00 0.00 4.40
2594 2927 3.456277 CCATTCTAGTCTAAGGGGCTGTT 59.544 47.826 0.00 0.00 0.00 3.16
2595 2928 4.080299 CCATTCTAGTCTAAGGGGCTGTTT 60.080 45.833 0.00 0.00 0.00 2.83
2596 2929 4.553330 TTCTAGTCTAAGGGGCTGTTTG 57.447 45.455 0.00 0.00 0.00 2.93
2597 2930 2.838202 TCTAGTCTAAGGGGCTGTTTGG 59.162 50.000 0.00 0.00 0.00 3.28
2598 2931 0.038310 AGTCTAAGGGGCTGTTTGGC 59.962 55.000 0.00 0.00 40.96 4.52
2599 2932 0.251165 GTCTAAGGGGCTGTTTGGCA 60.251 55.000 0.00 0.00 43.83 4.92
2600 2933 0.704076 TCTAAGGGGCTGTTTGGCAT 59.296 50.000 0.00 0.00 43.83 4.40
2601 2934 1.106285 CTAAGGGGCTGTTTGGCATC 58.894 55.000 0.00 0.00 43.83 3.91
2602 2935 0.679640 TAAGGGGCTGTTTGGCATCG 60.680 55.000 0.00 0.00 43.83 3.84
2603 2936 4.133796 GGGGCTGTTTGGCATCGC 62.134 66.667 0.00 0.00 43.83 4.58
2604 2937 3.064324 GGGCTGTTTGGCATCGCT 61.064 61.111 0.00 0.00 43.83 4.93
2605 2938 2.486966 GGCTGTTTGGCATCGCTC 59.513 61.111 0.00 0.00 41.37 5.03
2606 2939 2.042831 GGCTGTTTGGCATCGCTCT 61.043 57.895 0.00 0.00 41.37 4.09
2607 2940 1.136147 GCTGTTTGGCATCGCTCTG 59.864 57.895 0.00 0.00 0.00 3.35
2608 2941 1.136147 CTGTTTGGCATCGCTCTGC 59.864 57.895 0.00 0.00 41.53 4.26
2609 2942 1.302752 TGTTTGGCATCGCTCTGCT 60.303 52.632 7.22 0.00 41.95 4.24
2610 2943 1.300971 TGTTTGGCATCGCTCTGCTC 61.301 55.000 7.22 0.00 41.95 4.26
2611 2944 1.746615 TTTGGCATCGCTCTGCTCC 60.747 57.895 7.22 0.00 41.95 4.70
2612 2945 2.467993 TTTGGCATCGCTCTGCTCCA 62.468 55.000 7.22 0.00 41.95 3.86
2613 2946 2.894387 GGCATCGCTCTGCTCCAC 60.894 66.667 7.22 0.00 41.95 4.02
2614 2947 2.186384 GCATCGCTCTGCTCCACT 59.814 61.111 0.53 0.00 39.12 4.00
2615 2948 2.172372 GCATCGCTCTGCTCCACTG 61.172 63.158 0.53 0.00 39.12 3.66
2616 2949 2.172372 CATCGCTCTGCTCCACTGC 61.172 63.158 0.00 0.00 0.00 4.40
2617 2950 2.357575 ATCGCTCTGCTCCACTGCT 61.358 57.895 0.00 0.00 0.00 4.24
2618 2951 2.295472 ATCGCTCTGCTCCACTGCTC 62.295 60.000 0.00 0.00 0.00 4.26
2619 2952 2.125188 GCTCTGCTCCACTGCTCC 60.125 66.667 0.00 0.00 0.00 4.70
2620 2953 2.583520 CTCTGCTCCACTGCTCCC 59.416 66.667 0.00 0.00 0.00 4.30
2621 2954 3.368190 CTCTGCTCCACTGCTCCCG 62.368 68.421 0.00 0.00 0.00 5.14
2622 2955 4.463879 CTGCTCCACTGCTCCCGG 62.464 72.222 0.00 0.00 0.00 5.73
2638 2971 4.821589 GGAGCGGAGTTGGCGGAG 62.822 72.222 0.00 0.00 35.00 4.63
2654 2987 2.009774 CGGAGCTGTAGGTCAAAATGG 58.990 52.381 12.54 0.00 43.82 3.16
2655 2988 2.615493 CGGAGCTGTAGGTCAAAATGGT 60.615 50.000 12.54 0.00 43.82 3.55
2656 2989 2.749621 GGAGCTGTAGGTCAAAATGGTG 59.250 50.000 12.54 0.00 43.82 4.17
2657 2990 2.749621 GAGCTGTAGGTCAAAATGGTGG 59.250 50.000 6.23 0.00 41.81 4.61
2658 2991 2.375174 AGCTGTAGGTCAAAATGGTGGA 59.625 45.455 0.00 0.00 0.00 4.02
2659 2992 2.749621 GCTGTAGGTCAAAATGGTGGAG 59.250 50.000 0.00 0.00 0.00 3.86
2660 2993 3.810743 GCTGTAGGTCAAAATGGTGGAGT 60.811 47.826 0.00 0.00 0.00 3.85
2661 2994 4.398319 CTGTAGGTCAAAATGGTGGAGTT 58.602 43.478 0.00 0.00 0.00 3.01
2662 2995 4.141287 TGTAGGTCAAAATGGTGGAGTTG 58.859 43.478 0.00 0.00 0.00 3.16
2663 2996 1.963515 AGGTCAAAATGGTGGAGTTGC 59.036 47.619 0.00 0.00 0.00 4.17
2664 2997 1.000843 GGTCAAAATGGTGGAGTTGCC 59.999 52.381 0.00 0.00 37.10 4.52
2665 2998 1.686052 GTCAAAATGGTGGAGTTGCCA 59.314 47.619 0.00 0.00 46.96 4.92
2673 3006 3.257935 TGGAGTTGCCATTTACCCG 57.742 52.632 0.00 0.00 43.33 5.28
2674 3007 0.963355 TGGAGTTGCCATTTACCCGC 60.963 55.000 0.00 0.00 43.33 6.13
2675 3008 0.679960 GGAGTTGCCATTTACCCGCT 60.680 55.000 0.00 0.00 36.34 5.52
2676 3009 0.733150 GAGTTGCCATTTACCCGCTC 59.267 55.000 0.00 0.00 0.00 5.03
2677 3010 0.679960 AGTTGCCATTTACCCGCTCC 60.680 55.000 0.00 0.00 0.00 4.70
2678 3011 1.747367 TTGCCATTTACCCGCTCCG 60.747 57.895 0.00 0.00 0.00 4.63
2679 3012 3.583086 GCCATTTACCCGCTCCGC 61.583 66.667 0.00 0.00 0.00 5.54
2680 3013 2.124901 CCATTTACCCGCTCCGCA 60.125 61.111 0.00 0.00 0.00 5.69
2681 3014 2.180204 CCATTTACCCGCTCCGCAG 61.180 63.158 0.00 0.00 0.00 5.18
2682 3015 1.153449 CATTTACCCGCTCCGCAGA 60.153 57.895 0.00 0.00 0.00 4.26
2683 3016 0.532862 CATTTACCCGCTCCGCAGAT 60.533 55.000 0.00 0.00 0.00 2.90
2684 3017 0.180406 ATTTACCCGCTCCGCAGATT 59.820 50.000 0.00 0.00 0.00 2.40
2685 3018 0.461339 TTTACCCGCTCCGCAGATTC 60.461 55.000 0.00 0.00 0.00 2.52
2686 3019 2.306255 TTACCCGCTCCGCAGATTCC 62.306 60.000 0.00 0.00 0.00 3.01
2687 3020 4.918201 CCCGCTCCGCAGATTCCC 62.918 72.222 0.00 0.00 0.00 3.97
2711 3044 3.471354 GGACCATTACCGAACAGGG 57.529 57.895 0.00 0.00 46.96 4.45
2712 3045 0.746923 GGACCATTACCGAACAGGGC 60.747 60.000 0.00 0.00 46.96 5.19
2713 3046 0.746923 GACCATTACCGAACAGGGCC 60.747 60.000 0.00 0.00 46.96 5.80
2714 3047 1.205460 ACCATTACCGAACAGGGCCT 61.205 55.000 0.00 0.00 46.96 5.19
2715 3048 0.834612 CCATTACCGAACAGGGCCTA 59.165 55.000 5.28 0.00 46.96 3.93
2800 3136 2.427095 AGCCTGGTTTCTTGTTTGTGTC 59.573 45.455 0.00 0.00 0.00 3.67
2803 3139 3.192422 CCTGGTTTCTTGTTTGTGTCACA 59.808 43.478 0.18 0.18 0.00 3.58
2850 3186 5.879237 TGTTTGCTTGAGTCAGTACTTTTG 58.121 37.500 0.00 0.00 35.56 2.44
3117 3455 5.394553 GCCTTGGAAAGTGAAATATGGGAAG 60.395 44.000 0.00 0.00 44.25 3.46
3224 3562 8.252417 TCACATATCAGTAATTTTGCAATGCTT 58.748 29.630 6.82 0.00 0.00 3.91
3552 3894 8.492673 TTCTAATTTAGTGCCATACAGTCTTG 57.507 34.615 3.45 0.00 32.79 3.02
3752 4094 2.679716 GCCTCCCAGGTGATTGCT 59.320 61.111 0.00 0.00 37.80 3.91
3896 4251 8.894409 TTCAAGATTAAGCATCAACATAAACG 57.106 30.769 0.00 0.00 33.75 3.60
4010 4365 7.387948 GCTTCCTCAAAGAAACAGTCTTGTATA 59.612 37.037 0.00 0.00 46.36 1.47
4021 4376 9.099454 GAAACAGTCTTGTATAATGTCTTAGGG 57.901 37.037 0.00 0.00 36.23 3.53
4106 4461 8.693120 TTGGTTGTGTTGTTTACCATAATAGA 57.307 30.769 0.00 0.00 40.16 1.98
4260 4615 5.240183 GTGATAATGGATGTGAAGGGACATG 59.760 44.000 0.00 0.00 36.67 3.21
4263 4618 1.281867 TGGATGTGAAGGGACATGGTC 59.718 52.381 0.00 0.00 36.67 4.02
4680 5049 5.309806 AGTTTGTCCTTGGTACCTACTTCAT 59.690 40.000 14.36 0.00 0.00 2.57
4681 5050 6.499350 AGTTTGTCCTTGGTACCTACTTCATA 59.501 38.462 14.36 0.46 0.00 2.15
4682 5051 5.927281 TGTCCTTGGTACCTACTTCATAC 57.073 43.478 14.36 1.68 0.00 2.39
4683 5052 5.335261 TGTCCTTGGTACCTACTTCATACA 58.665 41.667 14.36 4.21 0.00 2.29
4684 5053 5.186409 TGTCCTTGGTACCTACTTCATACAC 59.814 44.000 14.36 0.00 0.00 2.90
4731 5100 2.017049 AGTGGACAAACTGAAGTGTGC 58.983 47.619 0.31 0.00 36.75 4.57
4741 5110 4.924305 ACTGAAGTGTGCAAAATGTCAT 57.076 36.364 0.00 0.00 0.00 3.06
4851 5221 5.243283 TGGTCTGAACAAGTAGGAGTACTTC 59.757 44.000 0.00 0.00 44.81 3.01
4940 5310 4.577283 TCACCCAGACTTTTACTTTTTCCG 59.423 41.667 0.00 0.00 0.00 4.30
4965 5335 7.381139 CGCTTGGAAGTTACAAATTGTTACATT 59.619 33.333 16.10 8.32 32.82 2.71
5083 5453 0.036765 TAGCCAAAGTCGCGGATGTT 60.037 50.000 6.13 0.00 0.00 2.71
5200 5570 3.022406 CCTAGAACAACGGGTAGCTACT 58.978 50.000 22.74 1.33 0.00 2.57
5202 5572 4.641989 CCTAGAACAACGGGTAGCTACTAA 59.358 45.833 22.74 0.00 0.00 2.24
5229 5599 3.593328 ACCCCTTCATCTTTGATTCCTGA 59.407 43.478 0.00 0.00 0.00 3.86
5255 5625 1.538512 GTTGTTCCGGCCTAACTTTCC 59.461 52.381 16.18 1.94 0.00 3.13
5260 5630 0.459759 CCGGCCTAACTTTCCGTCTC 60.460 60.000 0.00 0.00 41.46 3.36
5269 5639 6.870439 GCCTAACTTTCCGTCTCTACTTTTTA 59.130 38.462 0.00 0.00 0.00 1.52
5275 5645 2.921754 CCGTCTCTACTTTTTACAGCGG 59.078 50.000 0.00 0.00 0.00 5.52
5276 5646 3.572584 CGTCTCTACTTTTTACAGCGGT 58.427 45.455 0.00 0.00 0.00 5.68
5340 5711 0.674895 GACAGATGGTCCCAGTGTGC 60.675 60.000 8.44 0.00 40.83 4.57
5473 5865 1.603802 CTCTGTCGTGGCACAAACAAT 59.396 47.619 19.09 0.00 44.16 2.71
5475 5867 1.603802 CTGTCGTGGCACAAACAATCT 59.396 47.619 19.09 0.00 44.16 2.40
5519 5911 6.540914 ACGTATTCTAGGAGAGTTCTCTTCAG 59.459 42.308 10.31 6.20 42.48 3.02
5573 5965 0.326264 CCCTGTGGTCTTCTCCCAAG 59.674 60.000 0.00 0.00 32.72 3.61
5575 5967 0.322008 CTGTGGTCTTCTCCCAAGCC 60.322 60.000 0.00 0.00 32.72 4.35
5614 6007 3.471680 GTGAAACTTGTCTGAAGCTCCT 58.528 45.455 0.00 0.00 0.00 3.69
5634 6027 3.119388 CCTTGTTGCATGTTGAATCCGAT 60.119 43.478 0.00 0.00 0.00 4.18
5652 6045 2.726989 CGATCGACCCCGTTGTATATCG 60.727 54.545 10.26 0.00 37.05 2.92
5691 6084 3.973425 ACTGCTAGAATCTGGCCATTTT 58.027 40.909 15.93 2.23 37.15 1.82
5782 6175 8.822652 AATAAAGTCAGCAAGAAGGAAAAATG 57.177 30.769 0.00 0.00 0.00 2.32
5889 6286 0.876342 GGGCGCTCGTGGAGAATAAG 60.876 60.000 7.64 0.00 0.00 1.73
5897 6294 4.500035 GCTCGTGGAGAATAAGAAGTAGGG 60.500 50.000 0.00 0.00 0.00 3.53
5938 6340 5.506649 GGCCATTTCGTTTGAGTTTTCTGTA 60.507 40.000 0.00 0.00 0.00 2.74
5944 6346 6.971527 TCGTTTGAGTTTTCTGTAAGTTGA 57.028 33.333 0.00 0.00 33.76 3.18
5983 6385 9.548631 AGGACTGGTAGCATTGTTATATATAGT 57.451 33.333 0.00 0.00 0.00 2.12
5984 6386 9.804758 GGACTGGTAGCATTGTTATATATAGTC 57.195 37.037 0.00 0.00 0.00 2.59
6039 6441 4.274459 GTCAGCAAGAAACTGAGTGTTGAT 59.726 41.667 6.75 0.00 44.51 2.57
6072 6474 0.748450 TCTGACAAACGGGTCTTCGT 59.252 50.000 5.86 0.00 46.08 3.85
6080 6482 2.249844 ACGGGTCTTCGTTTGACAAT 57.750 45.000 0.00 0.00 40.85 2.71
6126 6528 4.259356 GCTCGTGGGGATTAAAAAGTAGT 58.741 43.478 0.00 0.00 0.00 2.73
6127 6529 5.422145 GCTCGTGGGGATTAAAAAGTAGTA 58.578 41.667 0.00 0.00 0.00 1.82
6128 6530 5.522824 GCTCGTGGGGATTAAAAAGTAGTAG 59.477 44.000 0.00 0.00 0.00 2.57
6140 6542 8.827177 TTAAAAAGTAGTAGGTCTGTCACATG 57.173 34.615 0.00 0.00 0.00 3.21
6142 6544 5.906113 AAGTAGTAGGTCTGTCACATGAG 57.094 43.478 0.00 0.00 0.00 2.90
6143 6545 4.924625 AGTAGTAGGTCTGTCACATGAGT 58.075 43.478 0.00 0.00 0.00 3.41
6145 6547 4.527509 AGTAGGTCTGTCACATGAGTTG 57.472 45.455 0.00 0.00 0.00 3.16
6153 6565 5.576384 GTCTGTCACATGAGTTGATCTTCTC 59.424 44.000 0.00 9.63 0.00 2.87
6189 6601 3.292936 GCAGCAGCAGCAGGTTGT 61.293 61.111 4.63 0.00 45.49 3.32
6190 6602 1.968017 GCAGCAGCAGCAGGTTGTA 60.968 57.895 4.63 0.00 45.49 2.41
6223 6642 6.304356 GCATATATGTGCATGTGTGTAAGT 57.696 37.500 18.51 0.00 44.43 2.24
6224 6643 6.138088 GCATATATGTGCATGTGTGTAAGTG 58.862 40.000 18.51 0.00 44.43 3.16
6225 6644 6.238456 GCATATATGTGCATGTGTGTAAGTGT 60.238 38.462 18.51 0.00 44.43 3.55
6236 6655 5.294356 TGTGTGTAAGTGTATTGACTGTCC 58.706 41.667 5.17 0.00 0.00 4.02
6245 6664 0.175760 ATTGACTGTCCGTATGCGCT 59.824 50.000 9.73 0.00 36.67 5.92
6290 6709 6.323996 TGACCGAACTAATGTATCTCCAGAAT 59.676 38.462 0.00 0.00 0.00 2.40
6308 6727 5.009410 CCAGAATCAAAGTGCTCTGTTTTCT 59.991 40.000 0.00 0.00 34.70 2.52
6321 6740 5.359194 TCTGTTTTCTAGGGGCAGAATAG 57.641 43.478 0.00 0.00 34.59 1.73
6426 6975 1.849039 AGGAGATTGGAGTGGATTGGG 59.151 52.381 0.00 0.00 0.00 4.12
6435 6984 2.158608 GGAGTGGATTGGGTTGGATAGG 60.159 54.545 0.00 0.00 0.00 2.57
6470 7019 6.824704 CGGGTCAAAAGTGGAAAAGGTATATA 59.175 38.462 0.00 0.00 0.00 0.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 72 3.826729 AGCTCCAAATGGTTAGAACAACC 59.173 43.478 0.00 0.00 40.67 3.77
106 108 6.063496 ACACCACTACACACTCTAGATCTA 57.937 41.667 1.69 1.69 0.00 1.98
123 125 4.386652 TCGCTTCTTCGTAAATTACACCAC 59.613 41.667 3.91 0.00 0.00 4.16
132 134 7.908082 CCATAATGATTTTCGCTTCTTCGTAAA 59.092 33.333 0.00 0.00 34.30 2.01
133 135 7.065324 ACCATAATGATTTTCGCTTCTTCGTAA 59.935 33.333 0.00 0.00 0.00 3.18
134 136 6.537301 ACCATAATGATTTTCGCTTCTTCGTA 59.463 34.615 0.00 0.00 0.00 3.43
135 137 5.354234 ACCATAATGATTTTCGCTTCTTCGT 59.646 36.000 0.00 0.00 0.00 3.85
136 138 5.678483 CACCATAATGATTTTCGCTTCTTCG 59.322 40.000 0.00 0.00 0.00 3.79
137 139 5.973565 CCACCATAATGATTTTCGCTTCTTC 59.026 40.000 0.00 0.00 0.00 2.87
139 141 4.202050 GCCACCATAATGATTTTCGCTTCT 60.202 41.667 0.00 0.00 0.00 2.85
140 142 4.044426 GCCACCATAATGATTTTCGCTTC 58.956 43.478 0.00 0.00 0.00 3.86
142 144 3.290710 AGCCACCATAATGATTTTCGCT 58.709 40.909 0.00 0.00 0.00 4.93
143 145 3.550842 GGAGCCACCATAATGATTTTCGC 60.551 47.826 0.00 0.00 38.79 4.70
145 147 7.530426 AATAGGAGCCACCATAATGATTTTC 57.470 36.000 0.47 0.00 42.04 2.29
235 237 4.584325 ACCAGACAAAAGTAACATGTGCAT 59.416 37.500 0.00 0.00 0.00 3.96
255 257 3.324268 GGAAAACCCCGGAAAATAAACCA 59.676 43.478 0.73 0.00 0.00 3.67
273 275 2.817258 AGCATTTTGAATCGGACGGAAA 59.183 40.909 0.00 0.00 0.00 3.13
275 277 2.006888 GAGCATTTTGAATCGGACGGA 58.993 47.619 0.00 0.00 0.00 4.69
568 570 3.570540 TGATAGCACTGAGTGGATAGCT 58.429 45.455 15.24 7.16 33.64 3.32
569 571 4.244066 CATGATAGCACTGAGTGGATAGC 58.756 47.826 15.24 0.00 33.64 2.97
570 572 5.465532 ACATGATAGCACTGAGTGGATAG 57.534 43.478 15.24 0.00 33.64 2.08
571 573 4.281941 GGACATGATAGCACTGAGTGGATA 59.718 45.833 15.24 0.00 33.64 2.59
572 574 3.070734 GGACATGATAGCACTGAGTGGAT 59.929 47.826 15.24 0.00 33.64 3.41
573 575 2.432146 GGACATGATAGCACTGAGTGGA 59.568 50.000 15.24 0.00 33.64 4.02
574 576 2.484417 GGGACATGATAGCACTGAGTGG 60.484 54.545 15.24 0.00 33.64 4.00
575 577 2.484417 GGGGACATGATAGCACTGAGTG 60.484 54.545 8.52 8.52 36.51 3.51
576 578 1.765314 GGGGACATGATAGCACTGAGT 59.235 52.381 0.00 0.00 0.00 3.41
577 579 1.764723 TGGGGACATGATAGCACTGAG 59.235 52.381 0.00 0.00 33.40 3.35
578 580 1.878211 TGGGGACATGATAGCACTGA 58.122 50.000 0.00 0.00 33.40 3.41
590 592 0.253894 TCTCGTAGTCGATGGGGACA 59.746 55.000 0.00 0.00 45.21 4.02
591 593 1.606903 ATCTCGTAGTCGATGGGGAC 58.393 55.000 0.00 0.00 45.21 4.46
592 594 3.263681 AGATATCTCGTAGTCGATGGGGA 59.736 47.826 0.00 0.00 45.21 4.81
593 595 3.611970 AGATATCTCGTAGTCGATGGGG 58.388 50.000 0.00 0.00 45.21 4.96
594 596 5.237561 CCATAGATATCTCGTAGTCGATGGG 59.762 48.000 8.95 0.00 45.21 4.00
595 597 5.277586 GCCATAGATATCTCGTAGTCGATGG 60.278 48.000 17.28 17.28 45.21 3.51
596 598 5.557325 CGCCATAGATATCTCGTAGTCGATG 60.557 48.000 8.95 4.80 45.21 3.84
597 599 4.508492 CGCCATAGATATCTCGTAGTCGAT 59.492 45.833 8.95 0.00 45.21 3.59
598 600 3.864003 CGCCATAGATATCTCGTAGTCGA 59.136 47.826 8.95 0.00 44.12 4.20
599 601 3.864003 TCGCCATAGATATCTCGTAGTCG 59.136 47.826 8.95 7.04 38.55 4.18
600 602 4.871557 AGTCGCCATAGATATCTCGTAGTC 59.128 45.833 8.95 0.00 0.00 2.59
601 603 4.834534 AGTCGCCATAGATATCTCGTAGT 58.165 43.478 8.95 0.00 0.00 2.73
602 604 5.351740 TGAAGTCGCCATAGATATCTCGTAG 59.648 44.000 8.95 0.00 0.00 3.51
603 605 5.243207 TGAAGTCGCCATAGATATCTCGTA 58.757 41.667 8.95 0.00 0.00 3.43
604 606 4.072839 TGAAGTCGCCATAGATATCTCGT 58.927 43.478 8.95 0.00 0.00 4.18
605 607 4.686839 TGAAGTCGCCATAGATATCTCG 57.313 45.455 8.95 6.86 0.00 4.04
606 608 6.201226 TGATGAAGTCGCCATAGATATCTC 57.799 41.667 8.95 0.00 0.00 2.75
607 609 6.596309 TTGATGAAGTCGCCATAGATATCT 57.404 37.500 10.73 10.73 0.00 1.98
608 610 7.840342 AATTGATGAAGTCGCCATAGATATC 57.160 36.000 0.00 0.00 0.00 1.63
609 611 7.879677 TGAAATTGATGAAGTCGCCATAGATAT 59.120 33.333 0.00 0.00 0.00 1.63
610 612 7.216494 TGAAATTGATGAAGTCGCCATAGATA 58.784 34.615 0.00 0.00 0.00 1.98
611 613 6.057533 TGAAATTGATGAAGTCGCCATAGAT 58.942 36.000 0.00 0.00 0.00 1.98
612 614 5.427378 TGAAATTGATGAAGTCGCCATAGA 58.573 37.500 0.00 0.00 0.00 1.98
613 615 5.739752 TGAAATTGATGAAGTCGCCATAG 57.260 39.130 0.00 0.00 0.00 2.23
614 616 6.507958 TTTGAAATTGATGAAGTCGCCATA 57.492 33.333 0.00 0.00 0.00 2.74
615 617 5.389859 TTTGAAATTGATGAAGTCGCCAT 57.610 34.783 0.00 0.00 0.00 4.40
616 618 4.844998 TTTGAAATTGATGAAGTCGCCA 57.155 36.364 0.00 0.00 0.00 5.69
617 619 6.095377 AGATTTTGAAATTGATGAAGTCGCC 58.905 36.000 0.00 0.00 0.00 5.54
618 620 7.965107 AGTAGATTTTGAAATTGATGAAGTCGC 59.035 33.333 0.00 0.00 0.00 5.19
619 621 9.270576 CAGTAGATTTTGAAATTGATGAAGTCG 57.729 33.333 0.00 0.00 0.00 4.18
624 626 8.659491 CGAGTCAGTAGATTTTGAAATTGATGA 58.341 33.333 0.00 0.00 0.00 2.92
625 627 7.907045 CCGAGTCAGTAGATTTTGAAATTGATG 59.093 37.037 0.00 0.00 0.00 3.07
626 628 7.414540 GCCGAGTCAGTAGATTTTGAAATTGAT 60.415 37.037 0.00 0.00 0.00 2.57
627 629 6.128282 GCCGAGTCAGTAGATTTTGAAATTGA 60.128 38.462 0.00 0.00 0.00 2.57
628 630 6.024049 GCCGAGTCAGTAGATTTTGAAATTG 58.976 40.000 0.00 0.00 0.00 2.32
629 631 5.123979 GGCCGAGTCAGTAGATTTTGAAATT 59.876 40.000 0.00 0.00 0.00 1.82
630 632 4.636206 GGCCGAGTCAGTAGATTTTGAAAT 59.364 41.667 0.00 0.00 0.00 2.17
631 633 4.000988 GGCCGAGTCAGTAGATTTTGAAA 58.999 43.478 0.00 0.00 0.00 2.69
632 634 3.007506 TGGCCGAGTCAGTAGATTTTGAA 59.992 43.478 0.00 0.00 0.00 2.69
633 635 2.565391 TGGCCGAGTCAGTAGATTTTGA 59.435 45.455 0.00 0.00 0.00 2.69
634 636 2.972625 TGGCCGAGTCAGTAGATTTTG 58.027 47.619 0.00 0.00 0.00 2.44
635 637 3.914426 ATGGCCGAGTCAGTAGATTTT 57.086 42.857 0.00 0.00 0.00 1.82
636 638 3.738281 CGAATGGCCGAGTCAGTAGATTT 60.738 47.826 0.00 0.00 0.00 2.17
637 639 2.223829 CGAATGGCCGAGTCAGTAGATT 60.224 50.000 0.00 0.00 0.00 2.40
638 640 1.338337 CGAATGGCCGAGTCAGTAGAT 59.662 52.381 0.00 0.00 0.00 1.98
639 641 0.738975 CGAATGGCCGAGTCAGTAGA 59.261 55.000 0.00 0.00 0.00 2.59
640 642 0.738975 TCGAATGGCCGAGTCAGTAG 59.261 55.000 0.00 0.00 34.19 2.57
641 643 1.179152 TTCGAATGGCCGAGTCAGTA 58.821 50.000 0.00 0.00 39.90 2.74
642 644 0.320374 TTTCGAATGGCCGAGTCAGT 59.680 50.000 0.00 0.00 39.90 3.41
643 645 0.721718 GTTTCGAATGGCCGAGTCAG 59.278 55.000 0.00 0.00 39.90 3.51
644 646 0.320374 AGTTTCGAATGGCCGAGTCA 59.680 50.000 0.00 0.00 39.90 3.41
645 647 1.128692 CAAGTTTCGAATGGCCGAGTC 59.871 52.381 0.00 0.00 39.90 3.36
646 648 1.156736 CAAGTTTCGAATGGCCGAGT 58.843 50.000 0.00 0.00 39.90 4.18
647 649 0.447801 CCAAGTTTCGAATGGCCGAG 59.552 55.000 0.00 0.00 39.90 4.63
648 650 2.550487 CCAAGTTTCGAATGGCCGA 58.450 52.632 0.00 0.00 36.70 5.54
652 654 2.791383 TTGTGCCAAGTTTCGAATGG 57.209 45.000 11.23 11.23 37.29 3.16
653 655 4.549458 AGATTTGTGCCAAGTTTCGAATG 58.451 39.130 0.00 0.00 0.00 2.67
654 656 4.853924 AGATTTGTGCCAAGTTTCGAAT 57.146 36.364 0.00 0.00 0.00 3.34
658 660 3.735746 CCGAAAGATTTGTGCCAAGTTTC 59.264 43.478 0.00 0.00 0.00 2.78
674 676 1.757118 TGAGTGGATAGCTCCCGAAAG 59.243 52.381 0.00 0.00 41.29 2.62
675 677 1.757118 CTGAGTGGATAGCTCCCGAAA 59.243 52.381 0.00 0.00 41.29 3.46
690 722 3.173151 TGGTGACATGATACCACTGAGT 58.827 45.455 17.75 0.00 41.80 3.41
691 723 3.893326 TGGTGACATGATACCACTGAG 57.107 47.619 17.75 0.00 41.80 3.35
708 740 5.818336 CCATAGATATCTCGTAGTCGATGGT 59.182 44.000 8.95 0.00 45.21 3.55
805 885 1.676014 CCATCTCGCTCTTTTTCCGGT 60.676 52.381 0.00 0.00 0.00 5.28
809 889 2.350522 TGCTCCATCTCGCTCTTTTTC 58.649 47.619 0.00 0.00 0.00 2.29
818 898 3.257561 CGCCGTTGCTCCATCTCG 61.258 66.667 0.00 0.00 34.43 4.04
890 970 2.938798 GGATGGTGGGTGGGTGGA 60.939 66.667 0.00 0.00 0.00 4.02
891 971 2.572333 GATGGATGGTGGGTGGGTGG 62.572 65.000 0.00 0.00 0.00 4.61
892 972 1.076777 GATGGATGGTGGGTGGGTG 60.077 63.158 0.00 0.00 0.00 4.61
893 973 2.679342 CGATGGATGGTGGGTGGGT 61.679 63.158 0.00 0.00 0.00 4.51
950 1034 2.047274 CTCTTTTCCCCTGCGCGA 60.047 61.111 12.10 0.00 0.00 5.87
977 1061 4.906664 TGTAGGTAGAGGTAGAGGTAGAGG 59.093 50.000 0.00 0.00 0.00 3.69
979 1063 5.547276 GGATGTAGGTAGAGGTAGAGGTAGA 59.453 48.000 0.00 0.00 0.00 2.59
980 1064 5.569227 CGGATGTAGGTAGAGGTAGAGGTAG 60.569 52.000 0.00 0.00 0.00 3.18
981 1065 4.285517 CGGATGTAGGTAGAGGTAGAGGTA 59.714 50.000 0.00 0.00 0.00 3.08
982 1066 3.072768 CGGATGTAGGTAGAGGTAGAGGT 59.927 52.174 0.00 0.00 0.00 3.85
983 1067 3.677190 CGGATGTAGGTAGAGGTAGAGG 58.323 54.545 0.00 0.00 0.00 3.69
984 1068 3.075884 GCGGATGTAGGTAGAGGTAGAG 58.924 54.545 0.00 0.00 0.00 2.43
985 1069 2.224719 GGCGGATGTAGGTAGAGGTAGA 60.225 54.545 0.00 0.00 0.00 2.59
986 1070 2.161030 GGCGGATGTAGGTAGAGGTAG 58.839 57.143 0.00 0.00 0.00 3.18
987 1071 1.496001 TGGCGGATGTAGGTAGAGGTA 59.504 52.381 0.00 0.00 0.00 3.08
988 1072 0.260816 TGGCGGATGTAGGTAGAGGT 59.739 55.000 0.00 0.00 0.00 3.85
989 1073 1.633774 ATGGCGGATGTAGGTAGAGG 58.366 55.000 0.00 0.00 0.00 3.69
990 1074 2.351835 CGAATGGCGGATGTAGGTAGAG 60.352 54.545 0.00 0.00 36.03 2.43
991 1075 1.611977 CGAATGGCGGATGTAGGTAGA 59.388 52.381 0.00 0.00 36.03 2.59
992 1076 1.611977 TCGAATGGCGGATGTAGGTAG 59.388 52.381 0.00 0.00 41.33 3.18
1018 1102 3.171528 TCTGATGGATGGATAGGAGCAG 58.828 50.000 0.00 0.00 0.00 4.24
1035 1119 2.410687 CGAGCCGAGCCTCTTCTGA 61.411 63.158 0.00 0.00 0.00 3.27
1038 1122 4.882396 GCCGAGCCGAGCCTCTTC 62.882 72.222 0.00 0.00 0.00 2.87
1118 1221 3.931247 TGCTTACCGTGCGTGGGT 61.931 61.111 0.00 0.00 41.62 4.51
1122 1225 4.692475 GGGGTGCTTACCGTGCGT 62.692 66.667 0.00 0.00 0.00 5.24
1138 1241 3.787001 GAGTGGAAGGGGAGCGGG 61.787 72.222 0.00 0.00 0.00 6.13
1149 1448 0.031111 AGGGGATGGAATCGAGTGGA 60.031 55.000 0.00 0.00 46.86 4.02
1256 1557 4.615834 CTAGCTCGCCGGAGTCGC 62.616 72.222 5.05 10.08 42.53 5.19
1260 1561 1.989966 TTCGTTCTAGCTCGCCGGAG 61.990 60.000 5.05 0.00 43.46 4.63
1261 1562 1.989966 CTTCGTTCTAGCTCGCCGGA 61.990 60.000 5.05 0.00 0.00 5.14
1264 1565 1.268640 CCTACTTCGTTCTAGCTCGCC 60.269 57.143 0.00 0.00 0.00 5.54
1266 1567 2.791849 GCACCTACTTCGTTCTAGCTCG 60.792 54.545 0.00 0.00 0.00 5.03
1549 1871 1.676635 GCTGCCATGACTCTTGCCA 60.677 57.895 0.00 0.00 0.00 4.92
1558 1880 0.674581 CCTTGTTCTCGCTGCCATGA 60.675 55.000 0.00 0.00 0.00 3.07
1615 1937 2.035940 ACGCGAGGGTCCTCTTCT 59.964 61.111 15.93 0.00 40.69 2.85
1616 1938 2.182030 CACGCGAGGGTCCTCTTC 59.818 66.667 15.93 5.92 40.69 2.87
1617 1939 3.382832 CCACGCGAGGGTCCTCTT 61.383 66.667 15.93 0.00 40.69 2.85
1618 1940 4.680537 ACCACGCGAGGGTCCTCT 62.681 66.667 26.38 1.03 40.69 3.69
1747 2069 2.224079 CACGCACTTGCAGAACTTATGT 59.776 45.455 1.48 0.00 42.21 2.29
1832 2154 3.007182 CCTGCCAAGTTTCAACATCCATT 59.993 43.478 0.00 0.00 0.00 3.16
1840 2163 1.454847 ACGCCCTGCCAAGTTTCAA 60.455 52.632 0.00 0.00 0.00 2.69
1884 2207 1.066215 TCTATGTCAGCACCGCACAAT 60.066 47.619 0.00 0.00 0.00 2.71
1959 2282 2.546584 CGATCTCTTGATTCGGGCATGA 60.547 50.000 0.00 0.00 32.19 3.07
1991 2314 0.610232 ATCCGCTGCTTCCTTGCTTT 60.610 50.000 0.00 0.00 0.00 3.51
1992 2315 1.001641 ATCCGCTGCTTCCTTGCTT 60.002 52.632 0.00 0.00 0.00 3.91
1993 2316 1.748122 CATCCGCTGCTTCCTTGCT 60.748 57.895 0.00 0.00 0.00 3.91
1994 2317 2.768492 CCATCCGCTGCTTCCTTGC 61.768 63.158 0.00 0.00 0.00 4.01
1996 2319 2.439156 GCCATCCGCTGCTTCCTT 60.439 61.111 0.00 0.00 0.00 3.36
1998 2321 2.751436 TTGCCATCCGCTGCTTCC 60.751 61.111 0.00 0.00 38.78 3.46
1999 2322 1.712977 CTCTTGCCATCCGCTGCTTC 61.713 60.000 0.00 0.00 38.78 3.86
2009 2332 4.512944 CGTATATCACTTTGCTCTTGCCAT 59.487 41.667 0.00 0.00 38.71 4.40
2431 2763 5.871324 TTACCTAACCCCAATTTTCTCCT 57.129 39.130 0.00 0.00 0.00 3.69
2481 2814 4.840271 ACAACCTACCAGCCATTTAGTAC 58.160 43.478 0.00 0.00 0.00 2.73
2585 2918 2.361610 CGATGCCAAACAGCCCCT 60.362 61.111 0.00 0.00 0.00 4.79
2586 2919 4.133796 GCGATGCCAAACAGCCCC 62.134 66.667 0.00 0.00 0.00 5.80
2587 2920 3.056313 GAGCGATGCCAAACAGCCC 62.056 63.158 0.00 0.00 0.00 5.19
2588 2921 2.042831 AGAGCGATGCCAAACAGCC 61.043 57.895 0.00 0.00 0.00 4.85
2589 2922 1.136147 CAGAGCGATGCCAAACAGC 59.864 57.895 0.00 0.00 0.00 4.40
2590 2923 1.136147 GCAGAGCGATGCCAAACAG 59.864 57.895 4.99 0.00 40.43 3.16
2591 2924 3.266964 GCAGAGCGATGCCAAACA 58.733 55.556 4.99 0.00 40.43 2.83
2597 2930 2.172372 CAGTGGAGCAGAGCGATGC 61.172 63.158 7.99 7.99 46.88 3.91
2598 2931 2.172372 GCAGTGGAGCAGAGCGATG 61.172 63.158 0.00 0.00 0.00 3.84
2599 2932 2.186384 GCAGTGGAGCAGAGCGAT 59.814 61.111 0.00 0.00 0.00 4.58
2600 2933 2.993840 AGCAGTGGAGCAGAGCGA 60.994 61.111 0.00 0.00 36.85 4.93
2601 2934 2.508887 GAGCAGTGGAGCAGAGCG 60.509 66.667 0.00 0.00 36.85 5.03
2602 2935 2.125188 GGAGCAGTGGAGCAGAGC 60.125 66.667 0.00 0.00 36.85 4.09
2603 2936 2.583520 GGGAGCAGTGGAGCAGAG 59.416 66.667 0.00 0.00 36.85 3.35
2604 2937 3.385384 CGGGAGCAGTGGAGCAGA 61.385 66.667 0.00 0.00 36.85 4.26
2605 2938 4.463879 CCGGGAGCAGTGGAGCAG 62.464 72.222 0.00 0.00 36.85 4.24
2607 2940 4.154347 CTCCGGGAGCAGTGGAGC 62.154 72.222 11.83 0.00 42.53 4.70
2621 2954 4.821589 CTCCGCCAACTCCGCTCC 62.822 72.222 0.00 0.00 0.00 4.70
2625 2958 2.890847 CTACAGCTCCGCCAACTCCG 62.891 65.000 0.00 0.00 0.00 4.63
2626 2959 1.153549 CTACAGCTCCGCCAACTCC 60.154 63.158 0.00 0.00 0.00 3.85
2627 2960 1.153549 CCTACAGCTCCGCCAACTC 60.154 63.158 0.00 0.00 0.00 3.01
2628 2961 1.889530 GACCTACAGCTCCGCCAACT 61.890 60.000 0.00 0.00 0.00 3.16
2629 2962 1.448013 GACCTACAGCTCCGCCAAC 60.448 63.158 0.00 0.00 0.00 3.77
2630 2963 1.476845 TTGACCTACAGCTCCGCCAA 61.477 55.000 0.00 0.00 0.00 4.52
2631 2964 1.476845 TTTGACCTACAGCTCCGCCA 61.477 55.000 0.00 0.00 0.00 5.69
2632 2965 0.321298 TTTTGACCTACAGCTCCGCC 60.321 55.000 0.00 0.00 0.00 6.13
2633 2966 1.398390 CATTTTGACCTACAGCTCCGC 59.602 52.381 0.00 0.00 0.00 5.54
2634 2967 2.009774 CCATTTTGACCTACAGCTCCG 58.990 52.381 0.00 0.00 0.00 4.63
2635 2968 2.749621 CACCATTTTGACCTACAGCTCC 59.250 50.000 0.00 0.00 0.00 4.70
2636 2969 2.749621 CCACCATTTTGACCTACAGCTC 59.250 50.000 0.00 0.00 0.00 4.09
2637 2970 2.375174 TCCACCATTTTGACCTACAGCT 59.625 45.455 0.00 0.00 0.00 4.24
2638 2971 2.749621 CTCCACCATTTTGACCTACAGC 59.250 50.000 0.00 0.00 0.00 4.40
2639 2972 4.021102 ACTCCACCATTTTGACCTACAG 57.979 45.455 0.00 0.00 0.00 2.74
2640 2973 4.141287 CAACTCCACCATTTTGACCTACA 58.859 43.478 0.00 0.00 0.00 2.74
2641 2974 3.057526 GCAACTCCACCATTTTGACCTAC 60.058 47.826 0.00 0.00 0.00 3.18
2642 2975 3.153919 GCAACTCCACCATTTTGACCTA 58.846 45.455 0.00 0.00 0.00 3.08
2643 2976 1.963515 GCAACTCCACCATTTTGACCT 59.036 47.619 0.00 0.00 0.00 3.85
2644 2977 1.000843 GGCAACTCCACCATTTTGACC 59.999 52.381 0.00 0.00 34.01 4.02
2645 2978 1.686052 TGGCAACTCCACCATTTTGAC 59.314 47.619 0.00 0.00 40.72 3.18
2646 2979 2.079170 TGGCAACTCCACCATTTTGA 57.921 45.000 0.00 0.00 40.72 2.69
2656 2989 0.679960 AGCGGGTAAATGGCAACTCC 60.680 55.000 0.00 0.00 37.61 3.85
2657 2990 0.733150 GAGCGGGTAAATGGCAACTC 59.267 55.000 0.00 0.00 37.61 3.01
2658 2991 0.679960 GGAGCGGGTAAATGGCAACT 60.680 55.000 0.00 0.00 37.61 3.16
2659 2992 1.807226 GGAGCGGGTAAATGGCAAC 59.193 57.895 0.00 0.00 0.00 4.17
2660 2993 1.747367 CGGAGCGGGTAAATGGCAA 60.747 57.895 0.00 0.00 0.00 4.52
2661 2994 2.124901 CGGAGCGGGTAAATGGCA 60.125 61.111 0.00 0.00 0.00 4.92
2674 3007 2.419198 CTCCGGGAATCTGCGGAG 59.581 66.667 0.00 0.00 38.06 4.63
2675 3008 3.849951 GCTCCGGGAATCTGCGGA 61.850 66.667 0.00 0.00 0.00 5.54
2687 3020 2.279252 CGGTAATGGTCCGCTCCG 60.279 66.667 0.00 0.00 41.48 4.63
2688 3021 0.808847 GTTCGGTAATGGTCCGCTCC 60.809 60.000 0.00 0.00 46.49 4.70
2689 3022 0.108520 TGTTCGGTAATGGTCCGCTC 60.109 55.000 0.00 0.00 46.49 5.03
2690 3023 0.108329 CTGTTCGGTAATGGTCCGCT 60.108 55.000 0.00 0.00 46.49 5.52
2691 3024 1.087771 CCTGTTCGGTAATGGTCCGC 61.088 60.000 0.00 0.00 46.49 5.54
2693 3026 0.746923 GCCCTGTTCGGTAATGGTCC 60.747 60.000 0.00 0.00 0.00 4.46
2694 3027 0.746923 GGCCCTGTTCGGTAATGGTC 60.747 60.000 0.00 0.00 0.00 4.02
2695 3028 1.205460 AGGCCCTGTTCGGTAATGGT 61.205 55.000 0.00 0.00 0.00 3.55
2696 3029 0.834612 TAGGCCCTGTTCGGTAATGG 59.165 55.000 0.00 0.00 0.00 3.16
2697 3030 2.093128 ACTTAGGCCCTGTTCGGTAATG 60.093 50.000 0.00 0.00 0.00 1.90
2698 3031 2.169978 GACTTAGGCCCTGTTCGGTAAT 59.830 50.000 0.00 0.00 0.00 1.89
2699 3032 1.551883 GACTTAGGCCCTGTTCGGTAA 59.448 52.381 0.00 0.00 0.00 2.85
2700 3033 1.188863 GACTTAGGCCCTGTTCGGTA 58.811 55.000 0.00 0.00 0.00 4.02
2701 3034 0.834687 TGACTTAGGCCCTGTTCGGT 60.835 55.000 0.00 0.00 0.00 4.69
2702 3035 0.108138 CTGACTTAGGCCCTGTTCGG 60.108 60.000 0.00 0.00 0.00 4.30
2703 3036 0.741221 GCTGACTTAGGCCCTGTTCG 60.741 60.000 0.00 0.00 0.00 3.95
2704 3037 0.324943 TGCTGACTTAGGCCCTGTTC 59.675 55.000 0.00 0.00 0.00 3.18
2705 3038 0.771127 TTGCTGACTTAGGCCCTGTT 59.229 50.000 0.00 0.00 0.00 3.16
2706 3039 0.771127 TTTGCTGACTTAGGCCCTGT 59.229 50.000 0.00 0.00 0.00 4.00
2707 3040 2.019984 GATTTGCTGACTTAGGCCCTG 58.980 52.381 0.00 0.00 0.00 4.45
2708 3041 1.918957 AGATTTGCTGACTTAGGCCCT 59.081 47.619 0.00 0.00 0.00 5.19
2709 3042 2.426842 AGATTTGCTGACTTAGGCCC 57.573 50.000 0.00 0.00 0.00 5.80
2781 3114 3.192422 TGTGACACAAACAAGAAACCAGG 59.808 43.478 5.62 0.00 0.00 4.45
2800 3136 8.960591 AGTGGACCTCATTTTAATAAAGATGTG 58.039 33.333 0.00 5.89 0.00 3.21
2803 3139 9.533831 ACAAGTGGACCTCATTTTAATAAAGAT 57.466 29.630 0.00 0.00 0.00 2.40
3117 3455 8.885494 AGAAATGAACTTAGCTATGATGAGAC 57.115 34.615 13.22 0.48 0.00 3.36
3260 3598 9.635520 CTAAATCTGATGCAGAAAATTTGAAGT 57.364 29.630 0.78 0.00 44.04 3.01
3552 3894 5.694910 TCAGTCGACAAGGAATTTTACTGTC 59.305 40.000 19.50 0.00 35.68 3.51
3826 4174 9.604626 CTCTGTAAAGAAATGTAAGAGCTTTTG 57.395 33.333 0.00 0.00 31.85 2.44
3830 4178 6.213600 TCCCTCTGTAAAGAAATGTAAGAGCT 59.786 38.462 0.00 0.00 0.00 4.09
4010 4365 7.410174 TGATTCCATTGTAACCCTAAGACATT 58.590 34.615 0.00 0.00 0.00 2.71
4021 4376 5.449177 GCCTAGCACTTGATTCCATTGTAAC 60.449 44.000 0.00 0.00 0.00 2.50
4260 4615 6.746120 TCACTTAATTTCCTATAGCTCGACC 58.254 40.000 0.00 0.00 0.00 4.79
4263 4618 9.692749 TTACATCACTTAATTTCCTATAGCTCG 57.307 33.333 0.00 0.00 0.00 5.03
4493 4850 6.515832 AGTTTTATTTTGCCAACTTCCTGAG 58.484 36.000 0.00 0.00 0.00 3.35
4534 4891 3.648339 TGCAATCAAAACAGGAGCTTC 57.352 42.857 0.00 0.00 0.00 3.86
4680 5049 5.728937 AGACACCTTAGGATCCTAGTGTA 57.271 43.478 31.71 15.84 37.75 2.90
4681 5050 4.611564 AGACACCTTAGGATCCTAGTGT 57.388 45.455 31.95 31.95 39.22 3.55
4682 5051 7.604657 AATAAGACACCTTAGGATCCTAGTG 57.395 40.000 27.65 27.65 38.19 2.74
4683 5052 8.625467 AAAATAAGACACCTTAGGATCCTAGT 57.375 34.615 20.72 15.26 38.19 2.57
4851 5221 9.685005 CTTTAATTCCGTAAAAGTACTGAATCG 57.315 33.333 0.00 0.00 40.96 3.34
4895 5265 9.341078 GGTGAATAAATAAGGGTATTCGGTAAA 57.659 33.333 0.00 0.00 38.86 2.01
4896 5266 7.938490 GGGTGAATAAATAAGGGTATTCGGTAA 59.062 37.037 0.00 0.00 38.86 2.85
4940 5310 8.487176 CAATGTAACAATTTGTAACTTCCAAGC 58.513 33.333 1.76 0.00 0.00 4.01
4965 5335 4.763279 CCATGCAGCATAGTCCATAATTCA 59.237 41.667 7.82 0.00 0.00 2.57
5083 5453 4.701651 TCTTCGTTACCGAGGTTTCTATCA 59.298 41.667 0.00 0.00 45.24 2.15
5200 5570 8.977412 GGAATCAAAGATGAAGGGGTAAAATTA 58.023 33.333 0.00 0.00 39.49 1.40
5202 5572 7.124750 CAGGAATCAAAGATGAAGGGGTAAAAT 59.875 37.037 0.00 0.00 39.49 1.82
5229 5599 0.398696 TAGGCCGGAACAACATGTGT 59.601 50.000 5.05 0.00 44.64 3.72
5255 5625 3.364023 CACCGCTGTAAAAAGTAGAGACG 59.636 47.826 0.00 0.00 0.00 4.18
5260 5630 2.092211 CGAGCACCGCTGTAAAAAGTAG 59.908 50.000 0.00 0.00 39.88 2.57
5269 5639 3.575351 GAGAACCGAGCACCGCTGT 62.575 63.158 0.00 0.00 39.88 4.40
5340 5711 3.608707 CGGTCGAACCTCGTTATGGATAG 60.609 52.174 0.00 0.00 41.35 2.08
5473 5865 0.589223 CAACGCGGCCTTGTTTAAGA 59.411 50.000 12.47 0.00 35.92 2.10
5475 5867 1.263752 GTACAACGCGGCCTTGTTTAA 59.736 47.619 19.60 2.87 33.79 1.52
5519 5911 2.738846 CTGGAGCATATATTGGCGACAC 59.261 50.000 0.00 0.00 42.67 3.67
5573 5965 0.879090 CTTACCCCTGTTGTTTCGGC 59.121 55.000 0.00 0.00 0.00 5.54
5575 5967 1.877443 CACCTTACCCCTGTTGTTTCG 59.123 52.381 0.00 0.00 0.00 3.46
5614 6007 3.426025 CGATCGGATTCAACATGCAACAA 60.426 43.478 7.38 0.00 0.00 2.83
5634 6027 1.603802 GTCGATATACAACGGGGTCGA 59.396 52.381 0.00 0.00 40.11 4.20
5652 6045 6.727824 AGCAGTTCTATGTGTGTTATTGTC 57.272 37.500 0.00 0.00 0.00 3.18
5691 6084 3.058708 CAGCTCGACAGAAAATTCAAGCA 60.059 43.478 0.00 0.00 0.00 3.91
5745 6138 5.418840 TGCTGACTTTATTTTGGAGATTCCC 59.581 40.000 0.00 0.00 35.03 3.97
5782 6175 4.688021 AGATACGAATTCAAGACCTGAGC 58.312 43.478 6.22 0.00 34.81 4.26
5874 6271 4.500035 CCCTACTTCTTATTCTCCACGAGC 60.500 50.000 0.00 0.00 0.00 5.03
5889 6286 3.195661 CCATAGCACGTTTCCCTACTTC 58.804 50.000 0.00 0.00 0.00 3.01
5897 6294 0.727398 GCCAGACCATAGCACGTTTC 59.273 55.000 0.00 0.00 0.00 2.78
5938 6340 9.071276 CCAGTCCTAATATTATGCAATCAACTT 57.929 33.333 0.00 0.00 0.00 2.66
5944 6346 7.689299 TGCTACCAGTCCTAATATTATGCAAT 58.311 34.615 0.00 0.00 0.00 3.56
5998 6400 7.468141 TGCTGACTTCAGTTTAGAGATTCTA 57.532 36.000 8.04 0.00 45.45 2.10
6039 6441 4.529109 TTGTCAGACGATATGAACACCA 57.471 40.909 0.00 0.00 0.00 4.17
6072 6474 0.968405 GCCCAAGCCTCATTGTCAAA 59.032 50.000 0.00 0.00 0.00 2.69
6080 6482 2.115910 CCAACTGCCCAAGCCTCA 59.884 61.111 0.00 0.00 38.69 3.86
6126 6528 5.019470 AGATCAACTCATGTGACAGACCTA 58.981 41.667 0.94 0.00 0.00 3.08
6127 6529 3.837146 AGATCAACTCATGTGACAGACCT 59.163 43.478 0.94 0.00 0.00 3.85
6128 6530 4.199432 AGATCAACTCATGTGACAGACC 57.801 45.455 0.94 0.00 0.00 3.85
6153 6565 1.338579 GCAGGTCAGAGGTCTCCAAAG 60.339 57.143 0.00 0.00 0.00 2.77
6218 6637 5.231568 GCATACGGACAGTCAATACACTTAC 59.768 44.000 2.17 0.00 0.00 2.34
6219 6638 5.345702 GCATACGGACAGTCAATACACTTA 58.654 41.667 2.17 0.00 0.00 2.24
6220 6639 4.181578 GCATACGGACAGTCAATACACTT 58.818 43.478 2.17 0.00 0.00 3.16
6221 6640 3.733988 CGCATACGGACAGTCAATACACT 60.734 47.826 2.17 0.00 34.97 3.55
6222 6641 2.534349 CGCATACGGACAGTCAATACAC 59.466 50.000 2.17 0.00 34.97 2.90
6223 6642 2.804647 CGCATACGGACAGTCAATACA 58.195 47.619 2.17 0.00 34.97 2.29
6224 6643 1.521423 GCGCATACGGACAGTCAATAC 59.479 52.381 0.30 0.00 40.57 1.89
6225 6644 1.407618 AGCGCATACGGACAGTCAATA 59.592 47.619 11.47 0.00 40.57 1.90
6236 6655 2.033065 ACGAGAACTACTAGCGCATACG 60.033 50.000 11.47 1.20 44.07 3.06
6245 6664 4.070009 TCAGAGCAACACGAGAACTACTA 58.930 43.478 0.00 0.00 0.00 1.82
6290 6709 4.389374 CCCTAGAAAACAGAGCACTTTGA 58.611 43.478 0.00 0.00 0.00 2.69
6308 6727 1.062121 AGCACTCCTATTCTGCCCCTA 60.062 52.381 0.00 0.00 0.00 3.53
6347 6894 3.764434 AGCCAGTTCGATAGTTCTTCTGA 59.236 43.478 0.00 0.00 37.40 3.27
6349 6896 5.185249 TGTTAGCCAGTTCGATAGTTCTTCT 59.815 40.000 0.00 0.00 37.40 2.85
6470 7019 6.965702 AAGTGACTACTGTTCAGTGCATGAAT 60.966 38.462 14.69 3.17 42.36 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.