Multiple sequence alignment - TraesCS3A01G076600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G076600 chr3A 100.000 2885 0 0 1 2885 47285391 47282507 0.000000e+00 5328.0
1 TraesCS3A01G076600 chr3A 83.842 1473 179 29 981 2404 47387071 47388533 0.000000e+00 1347.0
2 TraesCS3A01G076600 chr3B 94.953 1605 56 3 784 2383 59530960 59529376 0.000000e+00 2492.0
3 TraesCS3A01G076600 chr3B 86.197 1362 168 13 793 2146 59647256 59645907 0.000000e+00 1456.0
4 TraesCS3A01G076600 chr3B 78.624 1090 191 20 1026 2083 59535997 59534918 0.000000e+00 684.0
5 TraesCS3A01G076600 chr3B 93.798 387 19 3 2500 2885 59529380 59528998 6.930000e-161 577.0
6 TraesCS3A01G076600 chr3B 83.217 286 34 7 498 779 188866292 188866017 1.720000e-62 250.0
7 TraesCS3A01G076600 chr2D 94.567 497 25 2 1 496 614810673 614811168 0.000000e+00 767.0
8 TraesCS3A01G076600 chr2D 93.320 494 30 3 4 495 12543614 12544106 0.000000e+00 726.0
9 TraesCS3A01G076600 chr2D 92.727 495 31 5 3 495 590929313 590929804 0.000000e+00 710.0
10 TraesCS3A01G076600 chr2D 91.124 507 39 6 1 505 551214463 551213961 0.000000e+00 682.0
11 TraesCS3A01G076600 chrUn 92.986 499 34 1 1 498 110636844 110636346 0.000000e+00 726.0
12 TraesCS3A01G076600 chrUn 94.615 130 6 1 2376 2504 85477324 85477453 1.750000e-47 200.0
13 TraesCS3A01G076600 chr6D 92.829 502 30 4 3 503 25858351 25857855 0.000000e+00 723.0
14 TraesCS3A01G076600 chr5D 92.958 497 32 3 1 495 486728037 486728532 0.000000e+00 721.0
15 TraesCS3A01G076600 chr7B 92.901 493 34 1 1 492 685253882 685254374 0.000000e+00 715.0
16 TraesCS3A01G076600 chr4D 91.935 496 38 2 1 495 495798624 495799118 0.000000e+00 693.0
17 TraesCS3A01G076600 chr6A 83.972 287 35 9 498 780 320656831 320657110 6.130000e-67 265.0
18 TraesCS3A01G076600 chr6A 82.818 291 38 6 498 786 57686322 57686042 1.720000e-62 250.0
19 TraesCS3A01G076600 chr6A 83.955 268 24 10 498 761 58307530 58307278 3.720000e-59 239.0
20 TraesCS3A01G076600 chr6A 93.701 127 8 0 2380 2506 147978998 147978872 1.060000e-44 191.0
21 TraesCS3A01G076600 chr6A 92.366 131 10 0 2380 2510 116863168 116863038 1.360000e-43 187.0
22 TraesCS3A01G076600 chr5A 82.807 285 36 7 498 780 662733300 662733027 2.870000e-60 243.0
23 TraesCS3A01G076600 chr5A 93.548 124 8 0 2381 2504 402102606 402102729 4.910000e-43 185.0
24 TraesCS3A01G076600 chr3D 76.889 450 79 16 1576 2009 37432297 37431857 6.220000e-57 231.0
25 TraesCS3A01G076600 chr3D 82.231 242 30 8 2651 2879 37058386 37058627 2.270000e-46 196.0
26 TraesCS3A01G076600 chr5B 81.720 279 39 6 498 774 321534244 321533976 3.740000e-54 222.0
27 TraesCS3A01G076600 chr2B 92.754 138 10 0 2375 2512 799759011 799758874 1.750000e-47 200.0
28 TraesCS3A01G076600 chr2B 90.066 151 12 2 625 773 694937116 694936967 2.930000e-45 193.0
29 TraesCS3A01G076600 chr2A 83.333 228 27 6 544 770 171882821 171882604 1.750000e-47 200.0
30 TraesCS3A01G076600 chr2A 90.977 133 12 0 2376 2508 659285223 659285091 2.280000e-41 180.0
31 TraesCS3A01G076600 chr2A 91.837 49 2 1 741 787 391915454 391915502 1.860000e-07 67.6
32 TraesCS3A01G076600 chr4A 93.023 129 9 0 2379 2507 661479215 661479087 3.790000e-44 189.0
33 TraesCS3A01G076600 chr4A 93.548 124 8 0 2379 2502 552698871 552698748 4.910000e-43 185.0
34 TraesCS3A01G076600 chr6B 92.248 129 10 0 2379 2507 146351673 146351801 1.770000e-42 183.0
35 TraesCS3A01G076600 chr1B 80.870 230 26 6 553 780 447180285 447180498 6.400000e-37 165.0
36 TraesCS3A01G076600 chr7D 88.506 87 10 0 1832 1918 41439937 41439851 3.930000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G076600 chr3A 47282507 47285391 2884 True 5328 5328 100.000 1 2885 1 chr3A.!!$R1 2884
1 TraesCS3A01G076600 chr3A 47387071 47388533 1462 False 1347 1347 83.842 981 2404 1 chr3A.!!$F1 1423
2 TraesCS3A01G076600 chr3B 59645907 59647256 1349 True 1456 1456 86.197 793 2146 1 chr3B.!!$R1 1353
3 TraesCS3A01G076600 chr3B 59528998 59535997 6999 True 1251 2492 89.125 784 2885 3 chr3B.!!$R3 2101
4 TraesCS3A01G076600 chr2D 551213961 551214463 502 True 682 682 91.124 1 505 1 chr2D.!!$R1 504

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
536 537 0.037734 GGGAATCAAACCCACGACCT 59.962 55.0 0.0 0.0 46.05 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2151 6460 0.030101 GTCGATGAGCTCTTCTCCGG 59.97 60.0 22.93 10.76 41.18 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 2.024319 GATAGGCATCTCCACGCGC 61.024 63.158 5.73 0.00 37.29 6.86
85 86 2.677337 GCTTGAAGAAGACATGGAGCTC 59.323 50.000 4.71 4.71 0.00 4.09
87 88 2.171003 TGAAGAAGACATGGAGCTCGA 58.829 47.619 7.83 3.70 0.00 4.04
109 110 1.878522 CGAAGGGGATCTCAACGCG 60.879 63.158 3.53 3.53 0.00 6.01
111 112 2.240162 GAAGGGGATCTCAACGCGGT 62.240 60.000 12.47 0.00 0.00 5.68
149 150 3.949885 TTCCCACCGCCGCTCTCTA 62.950 63.158 0.00 0.00 0.00 2.43
155 156 1.109920 ACCGCCGCTCTCTATGTCAT 61.110 55.000 0.00 0.00 0.00 3.06
170 171 4.735132 CATCGTGGTCACCGCCGT 62.735 66.667 0.48 0.00 0.00 5.68
234 235 2.747989 CTCTCTGTCGCCCGCTTATATA 59.252 50.000 0.00 0.00 0.00 0.86
262 263 1.023513 GCAACGGCTCTCTGCTCAAT 61.024 55.000 0.00 0.00 42.39 2.57
272 273 2.039480 TCTCTGCTCAATGGCTCTTTGT 59.961 45.455 0.00 0.00 0.00 2.83
286 287 0.389025 CTTTGTTGGGTCCCACAAGC 59.611 55.000 11.24 1.96 30.78 4.01
287 288 1.045911 TTTGTTGGGTCCCACAAGCC 61.046 55.000 11.24 0.00 37.32 4.35
288 289 2.197324 GTTGGGTCCCACAAGCCA 59.803 61.111 11.24 0.00 44.78 4.75
297 298 4.249020 CACAAGCCACGCGTGCAA 62.249 61.111 33.17 0.00 41.40 4.08
309 310 4.261888 GTGCAACGGTCTGATCGT 57.738 55.556 10.68 10.68 43.14 3.73
311 312 0.388649 GTGCAACGGTCTGATCGTCT 60.389 55.000 17.19 4.48 40.18 4.18
314 315 1.828832 CAACGGTCTGATCGTCTAGC 58.171 55.000 17.19 0.00 40.18 3.42
315 316 0.377554 AACGGTCTGATCGTCTAGCG 59.622 55.000 17.19 0.00 40.18 4.26
318 319 1.352404 GTCTGATCGTCTAGCGCGT 59.648 57.895 8.43 0.00 41.07 6.01
320 321 0.810426 TCTGATCGTCTAGCGCGTCT 60.810 55.000 8.43 8.22 41.07 4.18
321 322 0.383737 CTGATCGTCTAGCGCGTCTC 60.384 60.000 8.43 0.00 41.07 3.36
322 323 0.810426 TGATCGTCTAGCGCGTCTCT 60.810 55.000 8.43 0.00 41.07 3.10
323 324 0.383737 GATCGTCTAGCGCGTCTCTG 60.384 60.000 8.43 2.86 41.07 3.35
324 325 2.381665 ATCGTCTAGCGCGTCTCTGC 62.382 60.000 8.43 0.00 41.07 4.26
326 327 3.877357 TCTAGCGCGTCTCTGCCG 61.877 66.667 8.43 0.00 0.00 5.69
333 334 4.803426 CGTCTCTGCCGCCTGGTC 62.803 72.222 0.00 0.00 37.67 4.02
334 335 4.459089 GTCTCTGCCGCCTGGTCC 62.459 72.222 0.00 0.00 37.67 4.46
342 343 3.000819 CGCCTGGTCCCACCTGTA 61.001 66.667 0.00 0.00 39.58 2.74
344 345 1.299976 GCCTGGTCCCACCTGTAAG 59.700 63.158 0.00 0.00 39.58 2.34
356 357 3.927555 CTGTAAGGGCCGAGTCAAA 57.072 52.632 0.00 0.00 0.00 2.69
358 359 1.804748 CTGTAAGGGCCGAGTCAAAAC 59.195 52.381 0.00 0.00 0.00 2.43
359 360 0.794473 GTAAGGGCCGAGTCAAAACG 59.206 55.000 0.00 0.00 0.00 3.60
360 361 0.393820 TAAGGGCCGAGTCAAAACGT 59.606 50.000 0.00 0.00 0.00 3.99
373 374 4.675976 TCAAAACGTTGACCTAAGGAGA 57.324 40.909 0.00 0.00 38.88 3.71
374 375 4.374399 TCAAAACGTTGACCTAAGGAGAC 58.626 43.478 0.00 0.00 38.88 3.36
375 376 2.719426 AACGTTGACCTAAGGAGACG 57.281 50.000 0.00 0.00 34.31 4.18
377 378 0.458025 CGTTGACCTAAGGAGACGGC 60.458 60.000 0.00 0.00 0.00 5.68
380 381 0.251653 TGACCTAAGGAGACGGCAGT 60.252 55.000 0.00 0.00 0.00 4.40
381 382 0.173708 GACCTAAGGAGACGGCAGTG 59.826 60.000 0.00 0.00 0.00 3.66
382 383 0.542232 ACCTAAGGAGACGGCAGTGT 60.542 55.000 0.00 0.00 0.00 3.55
383 384 0.608640 CCTAAGGAGACGGCAGTGTT 59.391 55.000 0.00 0.00 0.00 3.32
384 385 1.404315 CCTAAGGAGACGGCAGTGTTC 60.404 57.143 0.00 0.00 0.00 3.18
385 386 1.272490 CTAAGGAGACGGCAGTGTTCA 59.728 52.381 0.00 0.00 0.00 3.18
388 389 2.022129 GAGACGGCAGTGTTCACGG 61.022 63.158 0.00 0.00 0.00 4.94
389 390 2.028484 GACGGCAGTGTTCACGGA 59.972 61.111 0.00 0.00 0.00 4.69
390 391 1.593209 GACGGCAGTGTTCACGGAA 60.593 57.895 0.00 0.00 0.00 4.30
406 407 0.877071 GGAACGAGTCAGTACGGACA 59.123 55.000 24.95 0.00 40.29 4.02
408 409 1.802960 GAACGAGTCAGTACGGACAGA 59.197 52.381 24.95 0.00 40.29 3.41
414 415 2.015587 GTCAGTACGGACAGACTAGGG 58.984 57.143 19.57 0.00 38.65 3.53
415 416 1.064906 TCAGTACGGACAGACTAGGGG 60.065 57.143 0.00 0.00 0.00 4.79
417 418 0.682209 GTACGGACAGACTAGGGGCA 60.682 60.000 0.00 0.00 0.00 5.36
418 419 0.040058 TACGGACAGACTAGGGGCAA 59.960 55.000 0.00 0.00 0.00 4.52
421 422 1.822506 GGACAGACTAGGGGCAAAAC 58.177 55.000 0.00 0.00 0.00 2.43
422 423 1.351350 GGACAGACTAGGGGCAAAACT 59.649 52.381 0.00 0.00 0.00 2.66
423 424 2.427506 GACAGACTAGGGGCAAAACTG 58.572 52.381 0.00 0.00 0.00 3.16
424 425 2.038557 GACAGACTAGGGGCAAAACTGA 59.961 50.000 0.00 0.00 0.00 3.41
426 427 1.003696 AGACTAGGGGCAAAACTGAGC 59.996 52.381 0.00 0.00 0.00 4.26
427 428 0.771127 ACTAGGGGCAAAACTGAGCA 59.229 50.000 0.00 0.00 0.00 4.26
429 430 0.605319 TAGGGGCAAAACTGAGCACG 60.605 55.000 0.00 0.00 34.20 5.34
430 431 1.896660 GGGGCAAAACTGAGCACGA 60.897 57.895 0.00 0.00 34.20 4.35
431 432 1.244019 GGGGCAAAACTGAGCACGAT 61.244 55.000 0.00 0.00 34.20 3.73
432 433 0.598065 GGGCAAAACTGAGCACGATT 59.402 50.000 0.00 0.00 0.00 3.34
436 437 1.069973 CAAAACTGAGCACGATTCGCA 60.070 47.619 5.86 0.00 0.00 5.10
439 440 0.319900 ACTGAGCACGATTCGCAACT 60.320 50.000 5.86 0.68 0.00 3.16
440 441 0.094216 CTGAGCACGATTCGCAACTG 59.906 55.000 5.86 0.00 0.00 3.16
441 442 0.319469 TGAGCACGATTCGCAACTGA 60.319 50.000 5.86 0.00 0.00 3.41
442 443 0.368227 GAGCACGATTCGCAACTGAG 59.632 55.000 5.86 0.00 0.00 3.35
443 444 1.016130 AGCACGATTCGCAACTGAGG 61.016 55.000 5.86 0.00 0.00 3.86
444 445 1.970917 GCACGATTCGCAACTGAGGG 61.971 60.000 5.86 0.00 0.00 4.30
445 446 1.741770 ACGATTCGCAACTGAGGGC 60.742 57.895 5.86 0.00 0.00 5.19
448 449 0.881118 GATTCGCAACTGAGGGCAAA 59.119 50.000 0.00 0.00 0.00 3.68
450 451 0.383949 TTCGCAACTGAGGGCAAAAC 59.616 50.000 0.00 0.00 0.00 2.43
451 452 0.465460 TCGCAACTGAGGGCAAAACT 60.465 50.000 0.00 0.00 0.00 2.66
454 455 1.000938 GCAACTGAGGGCAAAACTGAG 60.001 52.381 0.00 0.00 0.00 3.35
456 457 0.183492 ACTGAGGGCAAAACTGAGCA 59.817 50.000 0.00 0.00 0.00 4.26
458 459 0.106769 TGAGGGCAAAACTGAGCACA 60.107 50.000 0.00 0.00 36.38 4.57
459 460 1.251251 GAGGGCAAAACTGAGCACAT 58.749 50.000 0.00 0.00 36.38 3.21
461 462 0.961019 GGGCAAAACTGAGCACATGA 59.039 50.000 0.00 0.00 33.42 3.07
462 463 1.340889 GGGCAAAACTGAGCACATGAA 59.659 47.619 0.00 0.00 33.42 2.57
463 464 2.397549 GGCAAAACTGAGCACATGAAC 58.602 47.619 0.00 0.00 0.00 3.18
464 465 2.223782 GGCAAAACTGAGCACATGAACA 60.224 45.455 0.00 0.00 0.00 3.18
467 468 2.346766 AACTGAGCACATGAACACCA 57.653 45.000 0.00 0.00 0.00 4.17
470 471 4.019792 ACTGAGCACATGAACACCATTA 57.980 40.909 0.00 0.00 31.94 1.90
471 472 4.397420 ACTGAGCACATGAACACCATTAA 58.603 39.130 0.00 0.00 31.94 1.40
473 474 4.650734 TGAGCACATGAACACCATTAAGA 58.349 39.130 0.00 0.00 31.94 2.10
474 475 4.696877 TGAGCACATGAACACCATTAAGAG 59.303 41.667 0.00 0.00 31.94 2.85
475 476 3.441572 AGCACATGAACACCATTAAGAGC 59.558 43.478 0.00 0.00 31.94 4.09
476 477 3.191162 GCACATGAACACCATTAAGAGCA 59.809 43.478 0.00 0.00 31.94 4.26
477 478 4.321156 GCACATGAACACCATTAAGAGCAA 60.321 41.667 0.00 0.00 31.94 3.91
478 479 5.771469 CACATGAACACCATTAAGAGCAAA 58.229 37.500 0.00 0.00 31.94 3.68
479 480 6.215121 CACATGAACACCATTAAGAGCAAAA 58.785 36.000 0.00 0.00 31.94 2.44
480 481 6.364165 CACATGAACACCATTAAGAGCAAAAG 59.636 38.462 0.00 0.00 31.94 2.27
482 483 5.136828 TGAACACCATTAAGAGCAAAAGGA 58.863 37.500 0.00 0.00 0.00 3.36
483 484 5.774690 TGAACACCATTAAGAGCAAAAGGAT 59.225 36.000 0.00 0.00 0.00 3.24
484 485 6.945435 TGAACACCATTAAGAGCAAAAGGATA 59.055 34.615 0.00 0.00 0.00 2.59
486 487 7.961326 ACACCATTAAGAGCAAAAGGATAAT 57.039 32.000 0.00 0.00 0.00 1.28
487 488 8.366359 ACACCATTAAGAGCAAAAGGATAATT 57.634 30.769 0.00 0.00 0.00 1.40
488 489 9.474313 ACACCATTAAGAGCAAAAGGATAATTA 57.526 29.630 0.00 0.00 0.00 1.40
491 492 9.750125 CCATTAAGAGCAAAAGGATAATTAACC 57.250 33.333 3.60 3.60 0.00 2.85
494 495 9.541884 TTAAGAGCAAAAGGATAATTAACCCTT 57.458 29.630 13.69 13.69 41.70 3.95
497 498 9.541884 AGAGCAAAAGGATAATTAACCCTTAAA 57.458 29.630 17.67 0.00 39.21 1.52
527 528 2.945456 GGGGGAGTATGGGAATCAAAC 58.055 52.381 0.00 0.00 0.00 2.93
528 529 2.424379 GGGGGAGTATGGGAATCAAACC 60.424 54.545 0.00 0.00 0.00 3.27
529 530 2.424379 GGGGAGTATGGGAATCAAACCC 60.424 54.545 0.00 0.00 46.87 4.11
535 536 2.563297 GGGAATCAAACCCACGACC 58.437 57.895 0.00 0.00 46.05 4.79
536 537 0.037734 GGGAATCAAACCCACGACCT 59.962 55.000 0.00 0.00 46.05 3.85
538 539 1.076332 GAATCAAACCCACGACCTCG 58.924 55.000 0.00 0.00 46.33 4.63
539 540 0.682852 AATCAAACCCACGACCTCGA 59.317 50.000 0.78 0.00 43.02 4.04
543 544 2.156051 AAACCCACGACCTCGAGCTC 62.156 60.000 6.99 2.73 43.02 4.09
544 545 4.180946 CCCACGACCTCGAGCTCG 62.181 72.222 30.03 30.03 43.02 5.03
547 548 2.104859 CACGACCTCGAGCTCGGTA 61.105 63.158 33.98 16.52 43.02 4.02
548 549 1.814586 ACGACCTCGAGCTCGGTAG 60.815 63.158 33.98 25.33 43.02 3.18
549 550 2.535788 CGACCTCGAGCTCGGTAGG 61.536 68.421 31.65 31.65 43.02 3.18
550 551 1.451747 GACCTCGAGCTCGGTAGGT 60.452 63.158 36.37 36.37 45.48 3.08
557 558 3.376082 AGCTCGGTAGGTCAAGGAA 57.624 52.632 0.00 0.00 0.00 3.36
558 559 0.896226 AGCTCGGTAGGTCAAGGAAC 59.104 55.000 0.00 0.00 0.00 3.62
559 560 0.108281 GCTCGGTAGGTCAAGGAACC 60.108 60.000 0.00 0.00 39.80 3.62
561 562 1.621814 CTCGGTAGGTCAAGGAACCAA 59.378 52.381 0.00 0.00 42.12 3.67
562 563 1.345415 TCGGTAGGTCAAGGAACCAAC 59.655 52.381 0.00 0.00 42.12 3.77
563 564 1.609841 CGGTAGGTCAAGGAACCAACC 60.610 57.143 0.00 0.00 42.12 3.77
564 565 1.422402 GGTAGGTCAAGGAACCAACCA 59.578 52.381 10.89 0.00 42.12 3.67
565 566 2.552373 GGTAGGTCAAGGAACCAACCAG 60.552 54.545 10.89 0.00 42.12 4.00
566 567 1.222567 AGGTCAAGGAACCAACCAGT 58.777 50.000 10.89 0.00 42.12 4.00
567 568 1.133792 AGGTCAAGGAACCAACCAGTG 60.134 52.381 10.89 0.00 42.12 3.66
568 569 0.668535 GTCAAGGAACCAACCAGTGC 59.331 55.000 0.00 0.00 0.00 4.40
569 570 0.257328 TCAAGGAACCAACCAGTGCA 59.743 50.000 0.00 0.00 0.00 4.57
570 571 0.385390 CAAGGAACCAACCAGTGCAC 59.615 55.000 9.40 9.40 0.00 4.57
571 572 0.258774 AAGGAACCAACCAGTGCACT 59.741 50.000 15.25 15.25 0.00 4.40
573 574 1.360192 GAACCAACCAGTGCACTGC 59.640 57.895 36.38 19.79 42.47 4.40
574 575 1.076777 AACCAACCAGTGCACTGCT 60.077 52.632 36.38 23.93 42.47 4.24
577 578 1.650912 CAACCAGTGCACTGCTCAC 59.349 57.895 36.38 0.00 42.47 3.51
579 580 0.179009 AACCAGTGCACTGCTCACAT 60.179 50.000 36.38 17.27 42.47 3.21
581 582 0.604511 CCAGTGCACTGCTCACATCA 60.605 55.000 36.38 0.00 42.47 3.07
582 583 1.450025 CAGTGCACTGCTCACATCAT 58.550 50.000 32.39 0.00 37.15 2.45
583 584 1.397343 CAGTGCACTGCTCACATCATC 59.603 52.381 32.39 0.00 37.15 2.92
586 587 2.422479 GTGCACTGCTCACATCATCATT 59.578 45.455 10.32 0.00 34.73 2.57
587 588 2.422127 TGCACTGCTCACATCATCATTG 59.578 45.455 1.98 0.00 0.00 2.82
589 590 3.128068 GCACTGCTCACATCATCATTGAA 59.872 43.478 0.00 0.00 34.96 2.69
590 591 4.202020 GCACTGCTCACATCATCATTGAAT 60.202 41.667 0.00 0.00 34.96 2.57
591 592 5.273944 CACTGCTCACATCATCATTGAATG 58.726 41.667 0.00 0.00 34.96 2.67
592 593 4.948004 ACTGCTCACATCATCATTGAATGT 59.052 37.500 4.93 0.00 34.96 2.71
593 594 6.037830 CACTGCTCACATCATCATTGAATGTA 59.962 38.462 4.93 0.00 34.96 2.29
595 596 7.023197 TGCTCACATCATCATTGAATGTAAG 57.977 36.000 4.93 1.63 34.96 2.34
596 597 6.038936 TGCTCACATCATCATTGAATGTAAGG 59.961 38.462 4.93 0.00 34.96 2.69
597 598 6.514541 GCTCACATCATCATTGAATGTAAGGG 60.515 42.308 4.93 0.00 34.96 3.95
599 600 5.010314 CACATCATCATTGAATGTAAGGGGG 59.990 44.000 4.93 0.00 34.96 5.40
602 603 4.478317 TCATCATTGAATGTAAGGGGGTCT 59.522 41.667 4.93 0.00 0.00 3.85
603 604 4.503714 TCATTGAATGTAAGGGGGTCTC 57.496 45.455 4.93 0.00 0.00 3.36
604 605 3.202151 TCATTGAATGTAAGGGGGTCTCC 59.798 47.826 4.93 0.00 0.00 3.71
605 606 2.661176 TGAATGTAAGGGGGTCTCCT 57.339 50.000 0.00 0.00 39.17 3.69
606 607 2.478292 TGAATGTAAGGGGGTCTCCTC 58.522 52.381 0.00 0.00 35.80 3.71
614 615 3.053359 AGGGGGTCTCCTCTTATTGAG 57.947 52.381 0.00 0.00 42.47 3.02
615 616 1.418264 GGGGGTCTCCTCTTATTGAGC 59.582 57.143 0.00 0.00 41.35 4.26
616 617 2.403561 GGGGTCTCCTCTTATTGAGCT 58.596 52.381 0.00 0.00 41.35 4.09
617 618 3.577919 GGGGTCTCCTCTTATTGAGCTA 58.422 50.000 0.00 0.00 41.35 3.32
618 619 4.164204 GGGGTCTCCTCTTATTGAGCTAT 58.836 47.826 0.00 0.00 41.35 2.97
620 621 4.020662 GGGTCTCCTCTTATTGAGCTATGG 60.021 50.000 0.00 0.00 41.35 2.74
621 622 4.835615 GGTCTCCTCTTATTGAGCTATGGA 59.164 45.833 0.00 0.00 41.35 3.41
622 623 5.279256 GGTCTCCTCTTATTGAGCTATGGAC 60.279 48.000 0.00 0.00 41.35 4.02
623 624 4.835615 TCTCCTCTTATTGAGCTATGGACC 59.164 45.833 0.00 0.00 41.35 4.46
624 625 4.556697 TCCTCTTATTGAGCTATGGACCA 58.443 43.478 0.00 0.00 41.35 4.02
625 626 4.590647 TCCTCTTATTGAGCTATGGACCAG 59.409 45.833 0.00 0.00 41.35 4.00
626 627 4.314121 CTCTTATTGAGCTATGGACCAGC 58.686 47.826 0.00 0.00 39.41 4.85
627 628 2.820059 TATTGAGCTATGGACCAGCG 57.180 50.000 0.00 0.00 43.97 5.18
628 629 0.533755 ATTGAGCTATGGACCAGCGC 60.534 55.000 0.00 0.00 43.97 5.92
630 631 1.593750 GAGCTATGGACCAGCGCAG 60.594 63.158 11.47 0.00 43.97 5.18
631 632 2.021068 GAGCTATGGACCAGCGCAGA 62.021 60.000 11.47 0.00 43.97 4.26
632 633 1.884926 GCTATGGACCAGCGCAGAC 60.885 63.158 11.47 0.00 0.00 3.51
633 634 1.517361 CTATGGACCAGCGCAGACA 59.483 57.895 11.47 6.14 0.00 3.41
634 635 0.108186 CTATGGACCAGCGCAGACAA 60.108 55.000 11.47 0.00 0.00 3.18
635 636 0.323302 TATGGACCAGCGCAGACAAA 59.677 50.000 11.47 0.00 0.00 2.83
637 638 0.749818 TGGACCAGCGCAGACAAAAA 60.750 50.000 11.47 0.00 0.00 1.94
672 673 8.532977 AACCAAACATTTTTCTCATTTATCGG 57.467 30.769 0.00 0.00 0.00 4.18
673 674 7.666623 ACCAAACATTTTTCTCATTTATCGGT 58.333 30.769 0.00 0.00 0.00 4.69
674 675 7.598493 ACCAAACATTTTTCTCATTTATCGGTG 59.402 33.333 0.00 0.00 0.00 4.94
677 678 5.184864 ACATTTTTCTCATTTATCGGTGGCA 59.815 36.000 0.00 0.00 0.00 4.92
679 680 5.913137 TTTTCTCATTTATCGGTGGCATT 57.087 34.783 0.00 0.00 0.00 3.56
681 682 3.213506 TCTCATTTATCGGTGGCATTGG 58.786 45.455 0.00 0.00 0.00 3.16
682 683 2.951642 CTCATTTATCGGTGGCATTGGT 59.048 45.455 0.00 0.00 0.00 3.67
683 684 2.687425 TCATTTATCGGTGGCATTGGTG 59.313 45.455 0.00 0.00 0.00 4.17
685 686 0.621082 TTATCGGTGGCATTGGTGGA 59.379 50.000 0.00 0.00 0.00 4.02
686 687 0.843309 TATCGGTGGCATTGGTGGAT 59.157 50.000 0.00 0.00 0.00 3.41
687 688 0.843309 ATCGGTGGCATTGGTGGATA 59.157 50.000 0.00 0.00 0.00 2.59
688 689 0.621082 TCGGTGGCATTGGTGGATAA 59.379 50.000 0.00 0.00 0.00 1.75
689 690 1.214175 TCGGTGGCATTGGTGGATAAT 59.786 47.619 0.00 0.00 0.00 1.28
690 691 2.031120 CGGTGGCATTGGTGGATAATT 58.969 47.619 0.00 0.00 0.00 1.40
691 692 2.430332 CGGTGGCATTGGTGGATAATTT 59.570 45.455 0.00 0.00 0.00 1.82
692 693 3.118811 CGGTGGCATTGGTGGATAATTTT 60.119 43.478 0.00 0.00 0.00 1.82
693 694 4.622695 CGGTGGCATTGGTGGATAATTTTT 60.623 41.667 0.00 0.00 0.00 1.94
712 713 5.570234 TTTTTGCAACTTTAGAGACGGTT 57.430 34.783 0.00 0.00 0.00 4.44
713 714 5.570234 TTTTGCAACTTTAGAGACGGTTT 57.430 34.783 0.00 0.00 0.00 3.27
714 715 5.570234 TTTGCAACTTTAGAGACGGTTTT 57.430 34.783 0.00 0.00 0.00 2.43
715 716 6.680874 TTTGCAACTTTAGAGACGGTTTTA 57.319 33.333 0.00 0.00 0.00 1.52
716 717 6.680874 TTGCAACTTTAGAGACGGTTTTAA 57.319 33.333 0.00 0.00 0.00 1.52
717 718 6.870971 TGCAACTTTAGAGACGGTTTTAAT 57.129 33.333 0.00 0.00 0.00 1.40
718 719 6.664515 TGCAACTTTAGAGACGGTTTTAATG 58.335 36.000 0.00 0.00 0.00 1.90
720 721 6.795593 GCAACTTTAGAGACGGTTTTAATGAC 59.204 38.462 0.00 0.00 0.00 3.06
722 723 5.636543 ACTTTAGAGACGGTTTTAATGACGG 59.363 40.000 0.00 0.00 0.00 4.79
723 724 3.947910 AGAGACGGTTTTAATGACGGA 57.052 42.857 0.00 0.00 0.00 4.69
725 726 2.331194 AGACGGTTTTAATGACGGACG 58.669 47.619 0.00 0.00 0.00 4.79
727 728 0.722848 CGGTTTTAATGACGGACGGG 59.277 55.000 0.00 0.00 0.00 5.28
728 729 0.448990 GGTTTTAATGACGGACGGGC 59.551 55.000 0.00 0.00 0.00 6.13
729 730 1.158434 GTTTTAATGACGGACGGGCA 58.842 50.000 0.00 0.00 0.00 5.36
730 731 1.129811 GTTTTAATGACGGACGGGCAG 59.870 52.381 0.00 0.00 0.00 4.85
732 733 0.609151 TTAATGACGGACGGGCAGAA 59.391 50.000 0.00 0.00 0.00 3.02
733 734 0.174845 TAATGACGGACGGGCAGAAG 59.825 55.000 0.00 0.00 0.00 2.85
735 736 1.827399 ATGACGGACGGGCAGAAGTT 61.827 55.000 0.00 0.00 0.00 2.66
736 737 1.180456 TGACGGACGGGCAGAAGTTA 61.180 55.000 0.00 0.00 0.00 2.24
737 738 0.458025 GACGGACGGGCAGAAGTTAG 60.458 60.000 0.00 0.00 0.00 2.34
743 744 4.303257 GGCAGAAGTTAGCCGCTT 57.697 55.556 0.00 0.00 41.70 4.68
744 745 2.556286 GGCAGAAGTTAGCCGCTTT 58.444 52.632 0.00 0.00 41.70 3.51
745 746 1.734163 GGCAGAAGTTAGCCGCTTTA 58.266 50.000 0.00 0.00 41.70 1.85
746 747 2.289565 GGCAGAAGTTAGCCGCTTTAT 58.710 47.619 0.00 0.00 41.70 1.40
748 749 3.875134 GGCAGAAGTTAGCCGCTTTATTA 59.125 43.478 0.00 0.00 41.70 0.98
749 750 4.024809 GGCAGAAGTTAGCCGCTTTATTAG 60.025 45.833 0.00 0.00 41.70 1.73
750 751 4.571176 GCAGAAGTTAGCCGCTTTATTAGT 59.429 41.667 0.00 0.00 0.00 2.24
751 752 5.751990 GCAGAAGTTAGCCGCTTTATTAGTA 59.248 40.000 0.00 0.00 0.00 1.82
752 753 6.074249 GCAGAAGTTAGCCGCTTTATTAGTAG 60.074 42.308 0.00 0.00 0.00 2.57
753 754 6.421202 CAGAAGTTAGCCGCTTTATTAGTAGG 59.579 42.308 0.00 0.00 0.00 3.18
754 755 5.866159 AGTTAGCCGCTTTATTAGTAGGT 57.134 39.130 0.00 0.00 0.00 3.08
758 759 7.924947 AGTTAGCCGCTTTATTAGTAGGTAAAG 59.075 37.037 0.00 10.51 39.66 1.85
759 760 6.475596 AGCCGCTTTATTAGTAGGTAAAGA 57.524 37.500 15.74 0.00 39.24 2.52
760 761 7.063934 AGCCGCTTTATTAGTAGGTAAAGAT 57.936 36.000 15.74 2.62 39.24 2.40
763 764 9.264719 GCCGCTTTATTAGTAGGTAAAGATAAA 57.735 33.333 15.74 2.70 39.24 1.40
807 5062 3.844577 TTAGTCACTACGTCTCTTGCC 57.155 47.619 0.00 0.00 0.00 4.52
950 5217 4.808414 TGGATATTGGCCTCTCTATTCG 57.192 45.455 3.32 0.00 0.00 3.34
953 5220 4.383552 GGATATTGGCCTCTCTATTCGCAT 60.384 45.833 3.32 0.00 0.00 4.73
958 5225 2.149578 GCCTCTCTATTCGCATTGCAT 58.850 47.619 9.69 0.00 0.00 3.96
1015 5284 3.282157 CCATGAATCTGGCCGCCG 61.282 66.667 4.58 0.00 0.00 6.46
1127 5399 2.481276 CGAGGATCAACAGCCGTATCAA 60.481 50.000 0.00 0.00 30.97 2.57
1194 5470 2.668834 CGACTTCGGTGAGAAAGGAGAC 60.669 54.545 0.00 0.00 38.57 3.36
1383 5659 5.901909 TGGAAGCTAACGCTCCCAGATTTA 61.902 45.833 0.00 0.00 46.70 1.40
1494 5770 0.731514 CGGAGAGCACGAAACGCTTA 60.732 55.000 0.00 0.00 40.63 3.09
1680 5959 0.532862 AGTTCAGGTGGCACAGTTCG 60.533 55.000 20.82 2.37 41.80 3.95
1767 6046 1.135199 GTCCGCTTCATCTACACCGAA 60.135 52.381 0.00 0.00 0.00 4.30
1781 6060 1.523258 CCGAAGAGCTGCCCATCAG 60.523 63.158 0.00 0.00 45.62 2.90
1799 6078 0.744281 AGACCAAGCAAAAACGTGGG 59.256 50.000 0.00 0.00 42.74 4.61
1922 6202 2.304221 TCCTCTCCGAGAACCTCAAA 57.696 50.000 0.00 0.00 0.00 2.69
2085 6373 1.667722 GAAACCTGCAGCCCTTTGG 59.332 57.895 8.66 0.00 0.00 3.28
2095 6383 0.896226 AGCCCTTTGGTACTCGAGAC 59.104 55.000 21.68 12.61 0.00 3.36
2151 6460 1.743252 CGCAACTCCTCCCTTCTGC 60.743 63.158 0.00 0.00 0.00 4.26
2225 6534 4.021102 TGACTTCAAGATCCCCAACTTC 57.979 45.455 0.00 0.00 0.00 3.01
2336 6649 2.328639 GGAGATCCGACGACGCTC 59.671 66.667 0.64 3.43 38.29 5.03
2372 6688 1.922570 TTTCCTCGCGCTTGTATCTC 58.077 50.000 5.56 0.00 0.00 2.75
2386 6702 5.221621 GCTTGTATCTCATCTTCCTAAGGCT 60.222 44.000 0.00 0.00 0.00 4.58
2399 6715 4.913784 TCCTAAGGCTTTGTTCGGTTAAT 58.086 39.130 4.45 0.00 0.00 1.40
2404 6720 2.559231 GGCTTTGTTCGGTTAATCCCAA 59.441 45.455 0.00 0.00 0.00 4.12
2405 6721 3.571571 GCTTTGTTCGGTTAATCCCAAC 58.428 45.455 0.00 0.00 0.00 3.77
2406 6722 3.613193 GCTTTGTTCGGTTAATCCCAACC 60.613 47.826 0.00 0.00 43.88 3.77
2424 6740 2.772739 CGCAGGTGGATTGAAGAGG 58.227 57.895 0.00 0.00 0.00 3.69
2425 6741 0.250234 CGCAGGTGGATTGAAGAGGA 59.750 55.000 0.00 0.00 0.00 3.71
2426 6742 1.134280 CGCAGGTGGATTGAAGAGGAT 60.134 52.381 0.00 0.00 0.00 3.24
2427 6743 2.681976 CGCAGGTGGATTGAAGAGGATT 60.682 50.000 0.00 0.00 0.00 3.01
2428 6744 3.359950 GCAGGTGGATTGAAGAGGATTT 58.640 45.455 0.00 0.00 0.00 2.17
2429 6745 4.526970 GCAGGTGGATTGAAGAGGATTTA 58.473 43.478 0.00 0.00 0.00 1.40
2430 6746 4.336713 GCAGGTGGATTGAAGAGGATTTAC 59.663 45.833 0.00 0.00 0.00 2.01
2431 6747 5.500234 CAGGTGGATTGAAGAGGATTTACA 58.500 41.667 0.00 0.00 0.00 2.41
2432 6748 5.587844 CAGGTGGATTGAAGAGGATTTACAG 59.412 44.000 0.00 0.00 0.00 2.74
2433 6749 5.488919 AGGTGGATTGAAGAGGATTTACAGA 59.511 40.000 0.00 0.00 0.00 3.41
2434 6750 5.819901 GGTGGATTGAAGAGGATTTACAGAG 59.180 44.000 0.00 0.00 0.00 3.35
2435 6751 6.352222 GGTGGATTGAAGAGGATTTACAGAGA 60.352 42.308 0.00 0.00 0.00 3.10
2436 6752 7.278875 GTGGATTGAAGAGGATTTACAGAGAT 58.721 38.462 0.00 0.00 0.00 2.75
2437 6753 7.772757 GTGGATTGAAGAGGATTTACAGAGATT 59.227 37.037 0.00 0.00 0.00 2.40
2438 6754 8.331740 TGGATTGAAGAGGATTTACAGAGATTT 58.668 33.333 0.00 0.00 0.00 2.17
2439 6755 9.183368 GGATTGAAGAGGATTTACAGAGATTTT 57.817 33.333 0.00 0.00 0.00 1.82
2441 6757 7.928307 TGAAGAGGATTTACAGAGATTTTGG 57.072 36.000 0.00 0.00 0.00 3.28
2442 6758 6.375455 TGAAGAGGATTTACAGAGATTTTGGC 59.625 38.462 0.00 0.00 0.00 4.52
2443 6759 6.072199 AGAGGATTTACAGAGATTTTGGCT 57.928 37.500 0.00 0.00 0.00 4.75
2444 6760 6.488715 AGAGGATTTACAGAGATTTTGGCTT 58.511 36.000 0.00 0.00 0.00 4.35
2445 6761 6.376581 AGAGGATTTACAGAGATTTTGGCTTG 59.623 38.462 0.00 0.00 0.00 4.01
2446 6762 5.105063 GGATTTACAGAGATTTTGGCTTGC 58.895 41.667 0.00 0.00 0.00 4.01
2447 6763 5.336690 GGATTTACAGAGATTTTGGCTTGCA 60.337 40.000 0.00 0.00 0.00 4.08
2448 6764 4.771590 TTACAGAGATTTTGGCTTGCAG 57.228 40.909 0.00 0.00 0.00 4.41
2449 6765 1.891150 ACAGAGATTTTGGCTTGCAGG 59.109 47.619 0.00 0.00 0.00 4.85
2450 6766 1.203994 CAGAGATTTTGGCTTGCAGGG 59.796 52.381 0.00 0.00 0.00 4.45
2451 6767 0.533951 GAGATTTTGGCTTGCAGGGG 59.466 55.000 0.00 0.00 0.00 4.79
2452 6768 0.114954 AGATTTTGGCTTGCAGGGGA 59.885 50.000 0.00 0.00 0.00 4.81
2453 6769 1.197812 GATTTTGGCTTGCAGGGGAT 58.802 50.000 0.00 0.00 0.00 3.85
2454 6770 1.556451 GATTTTGGCTTGCAGGGGATT 59.444 47.619 0.00 0.00 0.00 3.01
2455 6771 2.317371 TTTTGGCTTGCAGGGGATTA 57.683 45.000 0.00 0.00 0.00 1.75
2456 6772 2.317371 TTTGGCTTGCAGGGGATTAA 57.683 45.000 0.00 0.00 0.00 1.40
2457 6773 2.548464 TTGGCTTGCAGGGGATTAAT 57.452 45.000 0.00 0.00 0.00 1.40
2458 6774 2.548464 TGGCTTGCAGGGGATTAATT 57.452 45.000 0.00 0.00 0.00 1.40
2459 6775 2.387757 TGGCTTGCAGGGGATTAATTC 58.612 47.619 0.00 0.00 0.00 2.17
2460 6776 1.688735 GGCTTGCAGGGGATTAATTCC 59.311 52.381 3.88 3.88 44.62 3.01
2461 6777 2.670939 GCTTGCAGGGGATTAATTCCT 58.329 47.619 12.74 8.82 44.75 3.36
2462 6778 2.625314 GCTTGCAGGGGATTAATTCCTC 59.375 50.000 12.74 4.42 46.63 3.71
2470 6786 4.667573 GGGGATTAATTCCTCCTCAATCC 58.332 47.826 12.74 5.62 44.75 3.01
2472 6788 4.667573 GGATTAATTCCTCCTCAATCCCC 58.332 47.826 3.43 0.00 41.78 4.81
2473 6789 4.355287 GGATTAATTCCTCCTCAATCCCCT 59.645 45.833 3.43 0.00 41.78 4.79
2474 6790 5.162936 GGATTAATTCCTCCTCAATCCCCTT 60.163 44.000 3.43 0.00 41.78 3.95
2475 6791 3.961484 AATTCCTCCTCAATCCCCTTC 57.039 47.619 0.00 0.00 0.00 3.46
2476 6792 2.359376 TTCCTCCTCAATCCCCTTCA 57.641 50.000 0.00 0.00 0.00 3.02
2477 6793 2.359376 TCCTCCTCAATCCCCTTCAA 57.641 50.000 0.00 0.00 0.00 2.69
2478 6794 2.642982 TCCTCCTCAATCCCCTTCAAA 58.357 47.619 0.00 0.00 0.00 2.69
2479 6795 3.201363 TCCTCCTCAATCCCCTTCAAAT 58.799 45.455 0.00 0.00 0.00 2.32
2480 6796 3.203040 TCCTCCTCAATCCCCTTCAAATC 59.797 47.826 0.00 0.00 0.00 2.17
2481 6797 3.560105 CTCCTCAATCCCCTTCAAATCC 58.440 50.000 0.00 0.00 0.00 3.01
2482 6798 2.925653 TCCTCAATCCCCTTCAAATCCA 59.074 45.455 0.00 0.00 0.00 3.41
2483 6799 3.533068 TCCTCAATCCCCTTCAAATCCAT 59.467 43.478 0.00 0.00 0.00 3.41
2484 6800 3.893813 CCTCAATCCCCTTCAAATCCATC 59.106 47.826 0.00 0.00 0.00 3.51
2485 6801 4.387211 CCTCAATCCCCTTCAAATCCATCT 60.387 45.833 0.00 0.00 0.00 2.90
2486 6802 4.796606 TCAATCCCCTTCAAATCCATCTC 58.203 43.478 0.00 0.00 0.00 2.75
2487 6803 4.230272 TCAATCCCCTTCAAATCCATCTCA 59.770 41.667 0.00 0.00 0.00 3.27
2488 6804 4.886755 ATCCCCTTCAAATCCATCTCAA 57.113 40.909 0.00 0.00 0.00 3.02
2489 6805 3.968265 TCCCCTTCAAATCCATCTCAAC 58.032 45.455 0.00 0.00 0.00 3.18
2490 6806 3.026694 CCCCTTCAAATCCATCTCAACC 58.973 50.000 0.00 0.00 0.00 3.77
2491 6807 2.684881 CCCTTCAAATCCATCTCAACCG 59.315 50.000 0.00 0.00 0.00 4.44
2492 6808 3.609853 CCTTCAAATCCATCTCAACCGA 58.390 45.455 0.00 0.00 0.00 4.69
2493 6809 4.009675 CCTTCAAATCCATCTCAACCGAA 58.990 43.478 0.00 0.00 0.00 4.30
2494 6810 4.142600 CCTTCAAATCCATCTCAACCGAAC 60.143 45.833 0.00 0.00 0.00 3.95
2495 6811 4.014569 TCAAATCCATCTCAACCGAACA 57.985 40.909 0.00 0.00 0.00 3.18
2499 6815 0.804989 CCATCTCAACCGAACAAGGC 59.195 55.000 0.00 0.00 33.69 4.35
2501 6817 0.693049 ATCTCAACCGAACAAGGCCT 59.307 50.000 0.00 0.00 33.69 5.19
2544 6860 1.363744 GTCCAGGTGCTTCAAGATCG 58.636 55.000 0.00 0.00 0.00 3.69
2552 6868 1.066143 TGCTTCAAGATCGAAGACCCC 60.066 52.381 12.87 0.00 44.32 4.95
2579 6895 4.015406 TGGCCGCTCACCGTGAAT 62.015 61.111 2.19 0.00 34.38 2.57
2580 6896 2.746277 GGCCGCTCACCGTGAATT 60.746 61.111 2.19 0.00 34.38 2.17
2581 6897 1.448893 GGCCGCTCACCGTGAATTA 60.449 57.895 2.19 0.00 34.38 1.40
2602 6918 2.067766 CAGCTCTGTCACTCTCTTTGC 58.932 52.381 0.00 0.00 0.00 3.68
2604 6920 1.336332 GCTCTGTCACTCTCTTTGCGA 60.336 52.381 0.00 0.00 0.00 5.10
2607 6923 0.318441 TGTCACTCTCTTTGCGAGGG 59.682 55.000 0.00 0.00 46.22 4.30
2608 6924 0.390472 GTCACTCTCTTTGCGAGGGG 60.390 60.000 0.00 0.00 45.00 4.79
2619 6935 3.760035 CGAGGGGCACTGCTACGT 61.760 66.667 0.00 0.00 0.00 3.57
2629 6945 0.036388 ACTGCTACGTCATGGGGTTG 60.036 55.000 0.00 0.00 0.00 3.77
2720 7036 2.541390 CGAAGTCGACGTCGCTAAG 58.459 57.895 34.04 22.07 40.49 2.18
2732 7048 0.033405 TCGCTAAGGAGCCCTACACT 60.033 55.000 0.00 0.00 46.86 3.55
2733 7049 1.213678 TCGCTAAGGAGCCCTACACTA 59.786 52.381 0.00 0.00 46.86 2.74
2734 7050 1.609555 CGCTAAGGAGCCCTACACTAG 59.390 57.143 0.00 0.00 46.86 2.57
2774 7090 1.372582 CCAGATTCATGGTCACCGTG 58.627 55.000 10.14 10.14 41.56 4.94
2787 7103 4.101448 CCGTGCCTCCCTCCCAAG 62.101 72.222 0.00 0.00 0.00 3.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 0.320771 TGTCTTCTTCAAGCTCCCGC 60.321 55.000 0.00 0.00 0.00 6.13
85 86 1.068250 GAGATCCCCTTCGGCTTCG 59.932 63.158 0.00 0.00 0.00 3.79
87 88 0.253327 GTTGAGATCCCCTTCGGCTT 59.747 55.000 0.00 0.00 0.00 4.35
115 116 0.107643 GGAAGATAGCTGTGGAGGGC 59.892 60.000 0.00 0.00 0.00 5.19
149 150 1.447838 GCGGTGACCACGATGACAT 60.448 57.895 1.11 0.00 0.00 3.06
249 250 0.178533 AGAGCCATTGAGCAGAGAGC 59.821 55.000 0.00 0.00 46.19 4.09
262 263 1.152830 GGGACCCAACAAAGAGCCA 59.847 57.895 5.33 0.00 0.00 4.75
272 273 2.197324 GTGGCTTGTGGGACCCAA 59.803 61.111 16.98 0.00 34.18 4.12
287 288 4.354212 CAGACCGTTGCACGCGTG 62.354 66.667 34.01 34.01 40.91 5.34
288 289 3.858868 ATCAGACCGTTGCACGCGT 62.859 57.895 5.58 5.58 40.91 6.01
291 292 1.674611 GACGATCAGACCGTTGCACG 61.675 60.000 0.00 0.00 40.67 5.34
292 293 0.388649 AGACGATCAGACCGTTGCAC 60.389 55.000 0.00 0.00 40.67 4.57
293 294 1.132453 CTAGACGATCAGACCGTTGCA 59.868 52.381 0.00 0.00 40.67 4.08
294 295 1.828832 CTAGACGATCAGACCGTTGC 58.171 55.000 0.00 0.00 40.67 4.17
308 309 2.278271 GGCAGAGACGCGCTAGAC 60.278 66.667 5.73 0.00 0.00 2.59
309 310 3.877357 CGGCAGAGACGCGCTAGA 61.877 66.667 5.73 0.00 0.00 2.43
326 327 1.299976 CTTACAGGTGGGACCAGGC 59.700 63.158 0.00 0.00 41.95 4.85
327 328 1.562672 CCCTTACAGGTGGGACCAGG 61.563 65.000 0.00 0.00 46.15 4.45
328 329 1.991230 CCCTTACAGGTGGGACCAG 59.009 63.158 0.00 0.00 46.15 4.00
329 330 2.228480 GCCCTTACAGGTGGGACCA 61.228 63.158 1.75 0.00 46.15 4.02
330 331 2.675371 GCCCTTACAGGTGGGACC 59.325 66.667 1.75 0.00 46.15 4.46
332 333 3.006728 CGGCCCTTACAGGTGGGA 61.007 66.667 0.00 0.00 46.15 4.37
333 334 3.006728 TCGGCCCTTACAGGTGGG 61.007 66.667 0.00 0.00 46.00 4.61
334 335 2.240162 GACTCGGCCCTTACAGGTGG 62.240 65.000 0.00 0.00 31.93 4.61
335 336 1.218316 GACTCGGCCCTTACAGGTG 59.782 63.158 0.00 0.00 31.93 4.00
336 337 0.834687 TTGACTCGGCCCTTACAGGT 60.835 55.000 0.00 0.00 31.93 4.00
337 338 0.323629 TTTGACTCGGCCCTTACAGG 59.676 55.000 0.00 0.00 34.30 4.00
338 339 1.804748 GTTTTGACTCGGCCCTTACAG 59.195 52.381 0.00 0.00 0.00 2.74
341 342 0.393820 ACGTTTTGACTCGGCCCTTA 59.606 50.000 0.00 0.00 0.00 2.69
342 343 0.464916 AACGTTTTGACTCGGCCCTT 60.465 50.000 0.00 0.00 0.00 3.95
344 345 1.161563 TCAACGTTTTGACTCGGCCC 61.162 55.000 0.00 0.00 36.79 5.80
345 346 2.313267 TCAACGTTTTGACTCGGCC 58.687 52.632 0.00 0.00 36.79 6.13
352 353 4.374399 GTCTCCTTAGGTCAACGTTTTGA 58.626 43.478 0.00 0.00 39.55 2.69
354 355 3.387397 CGTCTCCTTAGGTCAACGTTTT 58.613 45.455 0.00 0.00 0.00 2.43
355 356 2.288640 CCGTCTCCTTAGGTCAACGTTT 60.289 50.000 16.52 0.00 0.00 3.60
356 357 1.271656 CCGTCTCCTTAGGTCAACGTT 59.728 52.381 16.52 0.00 0.00 3.99
358 359 0.458025 GCCGTCTCCTTAGGTCAACG 60.458 60.000 12.98 12.98 0.00 4.10
359 360 0.606604 TGCCGTCTCCTTAGGTCAAC 59.393 55.000 0.00 0.00 0.00 3.18
360 361 0.895530 CTGCCGTCTCCTTAGGTCAA 59.104 55.000 0.00 0.00 0.00 3.18
364 365 0.608640 AACACTGCCGTCTCCTTAGG 59.391 55.000 0.00 0.00 0.00 2.69
365 366 1.272490 TGAACACTGCCGTCTCCTTAG 59.728 52.381 0.00 0.00 0.00 2.18
366 367 1.000506 GTGAACACTGCCGTCTCCTTA 59.999 52.381 0.00 0.00 0.00 2.69
367 368 0.249911 GTGAACACTGCCGTCTCCTT 60.250 55.000 0.00 0.00 0.00 3.36
368 369 1.367840 GTGAACACTGCCGTCTCCT 59.632 57.895 0.00 0.00 0.00 3.69
370 371 2.022129 CCGTGAACACTGCCGTCTC 61.022 63.158 3.51 0.00 0.00 3.36
371 372 2.023414 TTCCGTGAACACTGCCGTCT 62.023 55.000 3.51 0.00 0.00 4.18
372 373 1.593209 TTCCGTGAACACTGCCGTC 60.593 57.895 3.51 0.00 0.00 4.79
373 374 1.885850 GTTCCGTGAACACTGCCGT 60.886 57.895 10.67 0.00 41.62 5.68
374 375 2.935955 GTTCCGTGAACACTGCCG 59.064 61.111 10.67 0.00 41.62 5.69
375 376 1.557443 CTCGTTCCGTGAACACTGCC 61.557 60.000 14.43 0.00 42.05 4.85
377 378 1.129326 GACTCGTTCCGTGAACACTG 58.871 55.000 14.43 7.76 42.05 3.66
380 381 0.742505 ACTGACTCGTTCCGTGAACA 59.257 50.000 14.43 4.25 42.05 3.18
381 382 2.314122 GTACTGACTCGTTCCGTGAAC 58.686 52.381 6.68 6.68 38.97 3.18
382 383 1.069703 CGTACTGACTCGTTCCGTGAA 60.070 52.381 0.00 0.00 0.00 3.18
383 384 0.514255 CGTACTGACTCGTTCCGTGA 59.486 55.000 0.00 0.00 0.00 4.35
384 385 0.453950 CCGTACTGACTCGTTCCGTG 60.454 60.000 0.00 0.00 0.00 4.94
385 386 0.603707 TCCGTACTGACTCGTTCCGT 60.604 55.000 0.00 0.00 0.00 4.69
388 389 1.802960 TCTGTCCGTACTGACTCGTTC 59.197 52.381 16.97 0.00 36.21 3.95
389 390 1.534595 GTCTGTCCGTACTGACTCGTT 59.465 52.381 16.97 0.00 45.88 3.85
390 391 1.155042 GTCTGTCCGTACTGACTCGT 58.845 55.000 16.97 0.00 45.88 4.18
395 396 1.064906 CCCCTAGTCTGTCCGTACTGA 60.065 57.143 0.00 0.00 0.00 3.41
396 397 1.390565 CCCCTAGTCTGTCCGTACTG 58.609 60.000 0.00 0.00 0.00 2.74
397 398 0.395448 GCCCCTAGTCTGTCCGTACT 60.395 60.000 0.00 0.00 0.00 2.73
398 399 0.682209 TGCCCCTAGTCTGTCCGTAC 60.682 60.000 0.00 0.00 0.00 3.67
400 401 0.834687 TTTGCCCCTAGTCTGTCCGT 60.835 55.000 0.00 0.00 0.00 4.69
401 402 0.323629 TTTTGCCCCTAGTCTGTCCG 59.676 55.000 0.00 0.00 0.00 4.79
403 404 2.038557 TCAGTTTTGCCCCTAGTCTGTC 59.961 50.000 0.00 0.00 0.00 3.51
404 405 2.039084 CTCAGTTTTGCCCCTAGTCTGT 59.961 50.000 0.00 0.00 0.00 3.41
406 407 1.003696 GCTCAGTTTTGCCCCTAGTCT 59.996 52.381 0.00 0.00 0.00 3.24
408 409 0.771127 TGCTCAGTTTTGCCCCTAGT 59.229 50.000 0.00 0.00 0.00 2.57
410 411 0.605319 CGTGCTCAGTTTTGCCCCTA 60.605 55.000 0.00 0.00 0.00 3.53
412 413 1.244019 ATCGTGCTCAGTTTTGCCCC 61.244 55.000 0.00 0.00 0.00 5.80
414 415 1.725931 CGAATCGTGCTCAGTTTTGCC 60.726 52.381 0.00 0.00 0.00 4.52
415 416 1.595609 CGAATCGTGCTCAGTTTTGC 58.404 50.000 0.00 0.00 0.00 3.68
417 418 1.225855 TGCGAATCGTGCTCAGTTTT 58.774 45.000 4.07 0.00 0.00 2.43
418 419 1.069906 GTTGCGAATCGTGCTCAGTTT 60.070 47.619 4.07 0.00 0.00 2.66
421 422 0.094216 CAGTTGCGAATCGTGCTCAG 59.906 55.000 4.07 0.00 0.00 3.35
422 423 0.319469 TCAGTTGCGAATCGTGCTCA 60.319 50.000 4.07 0.00 0.00 4.26
423 424 0.368227 CTCAGTTGCGAATCGTGCTC 59.632 55.000 4.07 0.00 0.00 4.26
424 425 1.016130 CCTCAGTTGCGAATCGTGCT 61.016 55.000 4.07 0.00 0.00 4.40
426 427 1.970917 GCCCTCAGTTGCGAATCGTG 61.971 60.000 4.07 0.00 0.00 4.35
427 428 1.741770 GCCCTCAGTTGCGAATCGT 60.742 57.895 4.07 0.00 0.00 3.73
429 430 0.881118 TTTGCCCTCAGTTGCGAATC 59.119 50.000 0.00 0.00 0.00 2.52
430 431 1.000274 GTTTTGCCCTCAGTTGCGAAT 60.000 47.619 0.00 0.00 31.25 3.34
431 432 0.383949 GTTTTGCCCTCAGTTGCGAA 59.616 50.000 0.00 0.00 0.00 4.70
432 433 0.465460 AGTTTTGCCCTCAGTTGCGA 60.465 50.000 0.00 0.00 0.00 5.10
436 437 1.322442 GCTCAGTTTTGCCCTCAGTT 58.678 50.000 0.00 0.00 0.00 3.16
439 440 0.106769 TGTGCTCAGTTTTGCCCTCA 60.107 50.000 0.00 0.00 0.00 3.86
440 441 1.068055 CATGTGCTCAGTTTTGCCCTC 60.068 52.381 0.00 0.00 0.00 4.30
441 442 0.963962 CATGTGCTCAGTTTTGCCCT 59.036 50.000 0.00 0.00 0.00 5.19
442 443 0.961019 TCATGTGCTCAGTTTTGCCC 59.039 50.000 0.00 0.00 0.00 5.36
443 444 2.223782 TGTTCATGTGCTCAGTTTTGCC 60.224 45.455 0.00 0.00 0.00 4.52
444 445 2.791004 GTGTTCATGTGCTCAGTTTTGC 59.209 45.455 0.00 0.00 0.00 3.68
445 446 3.181488 TGGTGTTCATGTGCTCAGTTTTG 60.181 43.478 0.00 0.00 0.00 2.44
448 449 2.346766 TGGTGTTCATGTGCTCAGTT 57.653 45.000 0.00 0.00 0.00 3.16
450 451 4.696877 TCTTAATGGTGTTCATGTGCTCAG 59.303 41.667 0.00 0.00 35.99 3.35
451 452 4.650734 TCTTAATGGTGTTCATGTGCTCA 58.349 39.130 0.00 0.00 35.99 4.26
454 455 3.191162 TGCTCTTAATGGTGTTCATGTGC 59.809 43.478 0.00 0.00 35.99 4.57
456 457 6.403866 TTTTGCTCTTAATGGTGTTCATGT 57.596 33.333 0.00 0.00 35.99 3.21
458 459 5.774690 TCCTTTTGCTCTTAATGGTGTTCAT 59.225 36.000 0.00 0.00 37.79 2.57
459 460 5.136828 TCCTTTTGCTCTTAATGGTGTTCA 58.863 37.500 0.00 0.00 0.00 3.18
461 462 7.775053 TTATCCTTTTGCTCTTAATGGTGTT 57.225 32.000 0.00 0.00 0.00 3.32
462 463 7.961326 ATTATCCTTTTGCTCTTAATGGTGT 57.039 32.000 0.00 0.00 0.00 4.16
467 468 9.715119 AGGGTTAATTATCCTTTTGCTCTTAAT 57.285 29.630 11.51 0.00 0.00 1.40
470 471 9.541884 TTAAGGGTTAATTATCCTTTTGCTCTT 57.458 29.630 19.39 11.76 40.86 2.85
471 472 9.541884 TTTAAGGGTTAATTATCCTTTTGCTCT 57.458 29.630 19.39 3.74 40.86 4.09
507 508 2.424379 GGTTTGATTCCCATACTCCCCC 60.424 54.545 0.00 0.00 0.00 5.40
509 510 2.945456 GGGTTTGATTCCCATACTCCC 58.055 52.381 0.00 0.00 44.05 4.30
518 519 1.450025 GAGGTCGTGGGTTTGATTCC 58.550 55.000 0.00 0.00 0.00 3.01
519 520 1.076332 CGAGGTCGTGGGTTTGATTC 58.924 55.000 0.00 0.00 34.11 2.52
520 521 0.682852 TCGAGGTCGTGGGTTTGATT 59.317 50.000 0.00 0.00 40.80 2.57
521 522 0.246635 CTCGAGGTCGTGGGTTTGAT 59.753 55.000 3.91 0.00 40.80 2.57
522 523 1.663739 CTCGAGGTCGTGGGTTTGA 59.336 57.895 3.91 0.00 40.80 2.69
524 525 2.156051 GAGCTCGAGGTCGTGGGTTT 62.156 60.000 27.10 0.00 40.80 3.27
525 526 2.600769 AGCTCGAGGTCGTGGGTT 60.601 61.111 12.24 0.00 40.80 4.11
526 527 3.063084 GAGCTCGAGGTCGTGGGT 61.063 66.667 27.10 0.00 40.80 4.51
535 536 0.378962 CTTGACCTACCGAGCTCGAG 59.621 60.000 36.59 26.73 43.02 4.04
536 537 1.030488 CCTTGACCTACCGAGCTCGA 61.030 60.000 36.59 17.45 43.02 4.04
538 539 1.135053 GTTCCTTGACCTACCGAGCTC 60.135 57.143 2.73 2.73 0.00 4.09
539 540 0.896226 GTTCCTTGACCTACCGAGCT 59.104 55.000 0.00 0.00 0.00 4.09
543 544 1.804601 GTTGGTTCCTTGACCTACCG 58.195 55.000 0.00 0.00 38.83 4.02
547 548 1.133792 CACTGGTTGGTTCCTTGACCT 60.134 52.381 9.57 0.00 40.47 3.85
548 549 1.318576 CACTGGTTGGTTCCTTGACC 58.681 55.000 0.00 0.00 40.23 4.02
549 550 0.668535 GCACTGGTTGGTTCCTTGAC 59.331 55.000 0.00 0.00 0.00 3.18
550 551 0.257328 TGCACTGGTTGGTTCCTTGA 59.743 50.000 0.00 0.00 0.00 3.02
552 553 0.258774 AGTGCACTGGTTGGTTCCTT 59.741 50.000 20.97 0.00 0.00 3.36
553 554 0.466189 CAGTGCACTGGTTGGTTCCT 60.466 55.000 34.65 0.00 40.20 3.36
555 556 1.360192 GCAGTGCACTGGTTGGTTC 59.640 57.895 39.92 22.36 43.94 3.62
556 557 3.525221 GCAGTGCACTGGTTGGTT 58.475 55.556 39.92 7.08 43.94 3.67
562 563 0.604511 TGATGTGAGCAGTGCACTGG 60.605 55.000 39.92 25.25 43.94 4.00
563 564 1.397343 GATGATGTGAGCAGTGCACTG 59.603 52.381 37.09 37.09 46.40 3.66
564 565 1.002773 TGATGATGTGAGCAGTGCACT 59.997 47.619 15.25 15.25 37.18 4.40
565 566 1.445871 TGATGATGTGAGCAGTGCAC 58.554 50.000 19.20 9.40 36.81 4.57
566 567 2.413310 ATGATGATGTGAGCAGTGCA 57.587 45.000 19.20 0.00 0.00 4.57
567 568 2.681344 TCAATGATGATGTGAGCAGTGC 59.319 45.455 7.13 7.13 27.84 4.40
568 569 4.957759 TTCAATGATGATGTGAGCAGTG 57.042 40.909 0.00 0.00 34.96 3.66
569 570 4.948004 ACATTCAATGATGATGTGAGCAGT 59.052 37.500 3.79 0.00 34.96 4.40
570 571 5.500645 ACATTCAATGATGATGTGAGCAG 57.499 39.130 3.79 0.00 34.96 4.24
571 572 6.038936 CCTTACATTCAATGATGATGTGAGCA 59.961 38.462 3.79 0.00 33.91 4.26
573 574 6.016527 CCCCTTACATTCAATGATGATGTGAG 60.017 42.308 3.79 10.50 34.96 3.51
574 575 5.829391 CCCCTTACATTCAATGATGATGTGA 59.171 40.000 3.79 2.52 34.96 3.58
577 578 5.142639 ACCCCCTTACATTCAATGATGATG 58.857 41.667 3.79 0.00 34.96 3.07
579 580 4.478317 AGACCCCCTTACATTCAATGATGA 59.522 41.667 3.79 0.00 0.00 2.92
581 582 4.141158 GGAGACCCCCTTACATTCAATGAT 60.141 45.833 3.79 0.00 0.00 2.45
582 583 3.202151 GGAGACCCCCTTACATTCAATGA 59.798 47.826 3.79 0.00 0.00 2.57
583 584 3.203040 AGGAGACCCCCTTACATTCAATG 59.797 47.826 0.00 0.00 30.99 2.82
586 587 2.045885 AGAGGAGACCCCCTTACATTCA 59.954 50.000 0.00 0.00 36.49 2.57
587 588 2.765502 AGAGGAGACCCCCTTACATTC 58.234 52.381 0.00 0.00 36.49 2.67
589 590 2.972153 AAGAGGAGACCCCCTTACAT 57.028 50.000 0.00 0.00 36.49 2.29
590 591 4.037927 CAATAAGAGGAGACCCCCTTACA 58.962 47.826 0.00 0.00 36.49 2.41
591 592 4.296056 TCAATAAGAGGAGACCCCCTTAC 58.704 47.826 0.00 0.00 36.49 2.34
592 593 4.557705 CTCAATAAGAGGAGACCCCCTTA 58.442 47.826 0.00 0.00 40.84 2.69
593 594 3.388913 CTCAATAAGAGGAGACCCCCTT 58.611 50.000 0.00 0.00 40.84 3.95
595 596 1.418264 GCTCAATAAGAGGAGACCCCC 59.582 57.143 0.00 0.00 44.86 5.40
596 597 2.403561 AGCTCAATAAGAGGAGACCCC 58.596 52.381 0.00 0.00 44.86 4.95
597 598 4.020662 CCATAGCTCAATAAGAGGAGACCC 60.021 50.000 0.00 0.00 44.86 4.46
599 600 5.279256 GGTCCATAGCTCAATAAGAGGAGAC 60.279 48.000 0.00 0.00 44.86 3.36
602 603 4.556697 TGGTCCATAGCTCAATAAGAGGA 58.443 43.478 0.00 0.00 44.86 3.71
603 604 4.802248 GCTGGTCCATAGCTCAATAAGAGG 60.802 50.000 0.00 0.00 44.86 3.69
605 606 3.243873 CGCTGGTCCATAGCTCAATAAGA 60.244 47.826 0.00 0.00 39.00 2.10
606 607 3.062763 CGCTGGTCCATAGCTCAATAAG 58.937 50.000 0.00 0.00 39.00 1.73
607 608 2.806745 GCGCTGGTCCATAGCTCAATAA 60.807 50.000 0.00 0.00 39.00 1.40
608 609 1.270305 GCGCTGGTCCATAGCTCAATA 60.270 52.381 0.00 0.00 39.00 1.90
609 610 0.533755 GCGCTGGTCCATAGCTCAAT 60.534 55.000 0.00 0.00 39.00 2.57
610 611 1.153369 GCGCTGGTCCATAGCTCAA 60.153 57.895 0.00 0.00 39.00 3.02
611 612 2.302199 CTGCGCTGGTCCATAGCTCA 62.302 60.000 9.73 7.67 39.00 4.26
612 613 1.593750 CTGCGCTGGTCCATAGCTC 60.594 63.158 9.73 3.72 39.00 4.09
613 614 2.060383 TCTGCGCTGGTCCATAGCT 61.060 57.895 14.70 0.00 39.00 3.32
614 615 1.884926 GTCTGCGCTGGTCCATAGC 60.885 63.158 14.70 10.76 37.80 2.97
615 616 0.108186 TTGTCTGCGCTGGTCCATAG 60.108 55.000 14.70 0.00 0.00 2.23
616 617 0.323302 TTTGTCTGCGCTGGTCCATA 59.677 50.000 14.70 2.21 0.00 2.74
617 618 0.537143 TTTTGTCTGCGCTGGTCCAT 60.537 50.000 14.70 0.00 0.00 3.41
618 619 0.749818 TTTTTGTCTGCGCTGGTCCA 60.750 50.000 14.70 6.31 0.00 4.02
646 647 8.987890 CCGATAAATGAGAAAAATGTTTGGTTT 58.012 29.630 0.00 0.00 0.00 3.27
647 648 8.147704 ACCGATAAATGAGAAAAATGTTTGGTT 58.852 29.630 0.00 0.00 0.00 3.67
650 651 7.411804 GCCACCGATAAATGAGAAAAATGTTTG 60.412 37.037 0.00 0.00 0.00 2.93
651 652 6.589907 GCCACCGATAAATGAGAAAAATGTTT 59.410 34.615 0.00 0.00 0.00 2.83
652 653 6.099341 GCCACCGATAAATGAGAAAAATGTT 58.901 36.000 0.00 0.00 0.00 2.71
655 656 5.913137 TGCCACCGATAAATGAGAAAAAT 57.087 34.783 0.00 0.00 0.00 1.82
656 657 5.913137 ATGCCACCGATAAATGAGAAAAA 57.087 34.783 0.00 0.00 0.00 1.94
657 658 5.394005 CCAATGCCACCGATAAATGAGAAAA 60.394 40.000 0.00 0.00 0.00 2.29
658 659 4.097741 CCAATGCCACCGATAAATGAGAAA 59.902 41.667 0.00 0.00 0.00 2.52
659 660 3.631686 CCAATGCCACCGATAAATGAGAA 59.368 43.478 0.00 0.00 0.00 2.87
660 661 3.213506 CCAATGCCACCGATAAATGAGA 58.786 45.455 0.00 0.00 0.00 3.27
662 663 2.687425 CACCAATGCCACCGATAAATGA 59.313 45.455 0.00 0.00 0.00 2.57
664 665 2.031120 CCACCAATGCCACCGATAAAT 58.969 47.619 0.00 0.00 0.00 1.40
665 666 1.004862 TCCACCAATGCCACCGATAAA 59.995 47.619 0.00 0.00 0.00 1.40
667 668 0.843309 ATCCACCAATGCCACCGATA 59.157 50.000 0.00 0.00 0.00 2.92
668 669 0.843309 TATCCACCAATGCCACCGAT 59.157 50.000 0.00 0.00 0.00 4.18
669 670 0.621082 TTATCCACCAATGCCACCGA 59.379 50.000 0.00 0.00 0.00 4.69
670 671 1.691196 ATTATCCACCAATGCCACCG 58.309 50.000 0.00 0.00 0.00 4.94
671 672 4.486125 AAAATTATCCACCAATGCCACC 57.514 40.909 0.00 0.00 0.00 4.61
690 691 5.570234 AACCGTCTCTAAAGTTGCAAAAA 57.430 34.783 0.00 0.00 0.00 1.94
691 692 5.570234 AAACCGTCTCTAAAGTTGCAAAA 57.430 34.783 0.00 0.00 0.00 2.44
692 693 5.570234 AAAACCGTCTCTAAAGTTGCAAA 57.430 34.783 0.00 0.00 0.00 3.68
693 694 6.680874 TTAAAACCGTCTCTAAAGTTGCAA 57.319 33.333 0.00 0.00 0.00 4.08
694 695 6.483974 TCATTAAAACCGTCTCTAAAGTTGCA 59.516 34.615 0.00 0.00 0.00 4.08
695 696 6.795593 GTCATTAAAACCGTCTCTAAAGTTGC 59.204 38.462 0.00 0.00 0.00 4.17
696 697 7.007697 CGTCATTAAAACCGTCTCTAAAGTTG 58.992 38.462 0.00 0.00 0.00 3.16
697 698 6.146673 CCGTCATTAAAACCGTCTCTAAAGTT 59.853 38.462 0.00 0.00 0.00 2.66
699 700 5.865552 TCCGTCATTAAAACCGTCTCTAAAG 59.134 40.000 0.00 0.00 0.00 1.85
700 701 5.634859 GTCCGTCATTAAAACCGTCTCTAAA 59.365 40.000 0.00 0.00 0.00 1.85
701 702 5.163513 GTCCGTCATTAAAACCGTCTCTAA 58.836 41.667 0.00 0.00 0.00 2.10
703 704 3.582780 GTCCGTCATTAAAACCGTCTCT 58.417 45.455 0.00 0.00 0.00 3.10
704 705 2.343544 CGTCCGTCATTAAAACCGTCTC 59.656 50.000 0.00 0.00 0.00 3.36
705 706 2.331194 CGTCCGTCATTAAAACCGTCT 58.669 47.619 0.00 0.00 0.00 4.18
706 707 1.391144 CCGTCCGTCATTAAAACCGTC 59.609 52.381 0.00 0.00 0.00 4.79
709 710 0.448990 GCCCGTCCGTCATTAAAACC 59.551 55.000 0.00 0.00 0.00 3.27
710 711 1.129811 CTGCCCGTCCGTCATTAAAAC 59.870 52.381 0.00 0.00 0.00 2.43
712 713 0.609151 TCTGCCCGTCCGTCATTAAA 59.391 50.000 0.00 0.00 0.00 1.52
713 714 0.609151 TTCTGCCCGTCCGTCATTAA 59.391 50.000 0.00 0.00 0.00 1.40
714 715 0.174845 CTTCTGCCCGTCCGTCATTA 59.825 55.000 0.00 0.00 0.00 1.90
715 716 1.079127 CTTCTGCCCGTCCGTCATT 60.079 57.895 0.00 0.00 0.00 2.57
716 717 1.827399 AACTTCTGCCCGTCCGTCAT 61.827 55.000 0.00 0.00 0.00 3.06
717 718 1.180456 TAACTTCTGCCCGTCCGTCA 61.180 55.000 0.00 0.00 0.00 4.35
718 719 0.458025 CTAACTTCTGCCCGTCCGTC 60.458 60.000 0.00 0.00 0.00 4.79
720 721 1.810030 GCTAACTTCTGCCCGTCCG 60.810 63.158 0.00 0.00 0.00 4.79
722 723 1.810030 CGGCTAACTTCTGCCCGTC 60.810 63.158 0.00 0.00 45.90 4.79
723 724 2.264794 CGGCTAACTTCTGCCCGT 59.735 61.111 0.00 0.00 45.90 5.28
725 726 0.960861 AAAGCGGCTAACTTCTGCCC 60.961 55.000 1.35 0.00 45.90 5.36
727 728 4.571176 ACTAATAAAGCGGCTAACTTCTGC 59.429 41.667 1.35 0.00 36.12 4.26
728 729 6.421202 CCTACTAATAAAGCGGCTAACTTCTG 59.579 42.308 1.35 0.00 0.00 3.02
729 730 6.097981 ACCTACTAATAAAGCGGCTAACTTCT 59.902 38.462 1.35 0.00 0.00 2.85
730 731 6.279123 ACCTACTAATAAAGCGGCTAACTTC 58.721 40.000 1.35 0.00 0.00 3.01
732 733 5.866159 ACCTACTAATAAAGCGGCTAACT 57.134 39.130 1.35 0.00 0.00 2.24
733 734 7.922811 TCTTTACCTACTAATAAAGCGGCTAAC 59.077 37.037 1.35 0.00 37.99 2.34
735 736 7.587037 TCTTTACCTACTAATAAAGCGGCTA 57.413 36.000 1.35 0.00 37.99 3.93
736 737 6.475596 TCTTTACCTACTAATAAAGCGGCT 57.524 37.500 0.00 0.00 37.99 5.52
737 738 8.822652 TTATCTTTACCTACTAATAAAGCGGC 57.177 34.615 0.00 0.00 37.99 6.53
807 5062 0.108520 GGCCAATGCACAATGGTCAG 60.109 55.000 13.20 0.00 41.06 3.51
837 5092 1.335496 TGCCCTTTTGTAGTTTGACGC 59.665 47.619 0.00 0.00 0.00 5.19
868 5123 7.113544 CGTAAAAGTTTCAATCTCTTTCCAAGC 59.886 37.037 0.00 0.00 32.09 4.01
953 5220 0.396139 GGAAGAGGATGGGCATGCAA 60.396 55.000 21.36 7.48 0.00 4.08
958 5225 2.914734 ATCCGGGAAGAGGATGGGCA 62.915 60.000 0.00 0.00 46.01 5.36
1194 5470 2.455032 GTGATTGACGAGAGGTGATCG 58.545 52.381 0.00 0.00 45.54 3.69
1337 5613 0.598065 CTTGCCGGTTTTGGAGAAGG 59.402 55.000 1.90 0.00 0.00 3.46
1403 5679 1.961394 GGCAGTCGTCCTCCACATATA 59.039 52.381 0.00 0.00 0.00 0.86
1404 5680 0.753262 GGCAGTCGTCCTCCACATAT 59.247 55.000 0.00 0.00 0.00 1.78
1407 5683 2.203640 AGGCAGTCGTCCTCCACA 60.204 61.111 0.00 0.00 0.00 4.17
1494 5770 4.796231 GATGGCACCGCGACGACT 62.796 66.667 8.23 0.00 0.00 4.18
1639 5915 2.049802 GGCGAAGACGGACGAACA 60.050 61.111 0.00 0.00 40.15 3.18
1767 6046 1.203441 TTGGTCTGATGGGCAGCTCT 61.203 55.000 0.00 0.00 44.52 4.09
1781 6060 0.741915 TCCCACGTTTTTGCTTGGTC 59.258 50.000 0.00 0.00 0.00 4.02
1922 6202 4.814900 GACATGACGGTCGATGCT 57.185 55.556 15.68 7.43 0.00 3.79
2085 6373 3.181487 ACTCTCTCTACGGTCTCGAGTAC 60.181 52.174 13.13 9.21 40.11 2.73
2095 6383 2.544685 CCATTGCAACTCTCTCTACGG 58.455 52.381 0.00 0.00 0.00 4.02
2151 6460 0.030101 GTCGATGAGCTCTTCTCCGG 59.970 60.000 22.93 10.76 41.18 5.14
2204 6513 3.394274 TGAAGTTGGGGATCTTGAAGTCA 59.606 43.478 0.00 0.00 0.00 3.41
2225 6534 3.114616 CTCCTCTGCACGGCGTTG 61.115 66.667 11.19 7.52 0.00 4.10
2339 6652 3.179830 CGAGGAAAACGGAGATGTAGTG 58.820 50.000 0.00 0.00 0.00 2.74
2341 6654 2.194271 GCGAGGAAAACGGAGATGTAG 58.806 52.381 0.00 0.00 0.00 2.74
2372 6688 3.375299 CCGAACAAAGCCTTAGGAAGATG 59.625 47.826 0.69 0.00 0.00 2.90
2399 6715 2.534396 AATCCACCTGCGGTTGGGA 61.534 57.895 9.55 8.91 33.28 4.37
2404 6720 0.036010 CTCTTCAATCCACCTGCGGT 60.036 55.000 0.00 0.00 35.62 5.68
2405 6721 0.745845 CCTCTTCAATCCACCTGCGG 60.746 60.000 0.00 0.00 0.00 5.69
2406 6722 0.250234 TCCTCTTCAATCCACCTGCG 59.750 55.000 0.00 0.00 0.00 5.18
2407 6723 2.725221 ATCCTCTTCAATCCACCTGC 57.275 50.000 0.00 0.00 0.00 4.85
2408 6724 5.500234 TGTAAATCCTCTTCAATCCACCTG 58.500 41.667 0.00 0.00 0.00 4.00
2409 6725 5.488919 TCTGTAAATCCTCTTCAATCCACCT 59.511 40.000 0.00 0.00 0.00 4.00
2410 6726 5.745227 TCTGTAAATCCTCTTCAATCCACC 58.255 41.667 0.00 0.00 0.00 4.61
2411 6727 6.644347 TCTCTGTAAATCCTCTTCAATCCAC 58.356 40.000 0.00 0.00 0.00 4.02
2412 6728 6.874278 TCTCTGTAAATCCTCTTCAATCCA 57.126 37.500 0.00 0.00 0.00 3.41
2413 6729 8.744568 AAATCTCTGTAAATCCTCTTCAATCC 57.255 34.615 0.00 0.00 0.00 3.01
2415 6731 8.964772 CCAAAATCTCTGTAAATCCTCTTCAAT 58.035 33.333 0.00 0.00 0.00 2.57
2416 6732 7.094205 GCCAAAATCTCTGTAAATCCTCTTCAA 60.094 37.037 0.00 0.00 0.00 2.69
2417 6733 6.375455 GCCAAAATCTCTGTAAATCCTCTTCA 59.625 38.462 0.00 0.00 0.00 3.02
2418 6734 6.601217 AGCCAAAATCTCTGTAAATCCTCTTC 59.399 38.462 0.00 0.00 0.00 2.87
2419 6735 6.488715 AGCCAAAATCTCTGTAAATCCTCTT 58.511 36.000 0.00 0.00 0.00 2.85
2420 6736 6.072199 AGCCAAAATCTCTGTAAATCCTCT 57.928 37.500 0.00 0.00 0.00 3.69
2421 6737 6.558909 CAAGCCAAAATCTCTGTAAATCCTC 58.441 40.000 0.00 0.00 0.00 3.71
2422 6738 5.105595 GCAAGCCAAAATCTCTGTAAATCCT 60.106 40.000 0.00 0.00 0.00 3.24
2423 6739 5.105063 GCAAGCCAAAATCTCTGTAAATCC 58.895 41.667 0.00 0.00 0.00 3.01
2424 6740 5.713025 TGCAAGCCAAAATCTCTGTAAATC 58.287 37.500 0.00 0.00 0.00 2.17
2425 6741 5.337009 CCTGCAAGCCAAAATCTCTGTAAAT 60.337 40.000 0.00 0.00 0.00 1.40
2426 6742 4.022068 CCTGCAAGCCAAAATCTCTGTAAA 60.022 41.667 0.00 0.00 0.00 2.01
2427 6743 3.507233 CCTGCAAGCCAAAATCTCTGTAA 59.493 43.478 0.00 0.00 0.00 2.41
2428 6744 3.084039 CCTGCAAGCCAAAATCTCTGTA 58.916 45.455 0.00 0.00 0.00 2.74
2429 6745 1.891150 CCTGCAAGCCAAAATCTCTGT 59.109 47.619 0.00 0.00 0.00 3.41
2430 6746 1.203994 CCCTGCAAGCCAAAATCTCTG 59.796 52.381 0.00 0.00 0.00 3.35
2431 6747 1.553706 CCCTGCAAGCCAAAATCTCT 58.446 50.000 0.00 0.00 0.00 3.10
2432 6748 0.533951 CCCCTGCAAGCCAAAATCTC 59.466 55.000 0.00 0.00 0.00 2.75
2433 6749 0.114954 TCCCCTGCAAGCCAAAATCT 59.885 50.000 0.00 0.00 0.00 2.40
2434 6750 1.197812 ATCCCCTGCAAGCCAAAATC 58.802 50.000 0.00 0.00 0.00 2.17
2435 6751 1.660242 AATCCCCTGCAAGCCAAAAT 58.340 45.000 0.00 0.00 0.00 1.82
2436 6752 2.317371 TAATCCCCTGCAAGCCAAAA 57.683 45.000 0.00 0.00 0.00 2.44
2437 6753 2.317371 TTAATCCCCTGCAAGCCAAA 57.683 45.000 0.00 0.00 0.00 3.28
2438 6754 2.548464 ATTAATCCCCTGCAAGCCAA 57.452 45.000 0.00 0.00 0.00 4.52
2439 6755 2.387757 GAATTAATCCCCTGCAAGCCA 58.612 47.619 0.00 0.00 0.00 4.75
2440 6756 1.688735 GGAATTAATCCCCTGCAAGCC 59.311 52.381 0.00 0.00 43.00 4.35
2451 6767 5.590976 AGGGGATTGAGGAGGAATTAATC 57.409 43.478 0.00 0.00 0.00 1.75
2452 6768 5.436374 TGAAGGGGATTGAGGAGGAATTAAT 59.564 40.000 0.00 0.00 0.00 1.40
2453 6769 4.793520 TGAAGGGGATTGAGGAGGAATTAA 59.206 41.667 0.00 0.00 0.00 1.40
2454 6770 4.379875 TGAAGGGGATTGAGGAGGAATTA 58.620 43.478 0.00 0.00 0.00 1.40
2455 6771 3.201363 TGAAGGGGATTGAGGAGGAATT 58.799 45.455 0.00 0.00 0.00 2.17
2456 6772 2.863884 TGAAGGGGATTGAGGAGGAAT 58.136 47.619 0.00 0.00 0.00 3.01
2457 6773 2.359376 TGAAGGGGATTGAGGAGGAA 57.641 50.000 0.00 0.00 0.00 3.36
2458 6774 2.359376 TTGAAGGGGATTGAGGAGGA 57.641 50.000 0.00 0.00 0.00 3.71
2459 6775 3.560105 GATTTGAAGGGGATTGAGGAGG 58.440 50.000 0.00 0.00 0.00 4.30
2460 6776 3.053395 TGGATTTGAAGGGGATTGAGGAG 60.053 47.826 0.00 0.00 0.00 3.69
2461 6777 2.925653 TGGATTTGAAGGGGATTGAGGA 59.074 45.455 0.00 0.00 0.00 3.71
2462 6778 3.386932 TGGATTTGAAGGGGATTGAGG 57.613 47.619 0.00 0.00 0.00 3.86
2463 6779 4.801164 AGATGGATTTGAAGGGGATTGAG 58.199 43.478 0.00 0.00 0.00 3.02
2464 6780 4.230272 TGAGATGGATTTGAAGGGGATTGA 59.770 41.667 0.00 0.00 0.00 2.57
2465 6781 4.539726 TGAGATGGATTTGAAGGGGATTG 58.460 43.478 0.00 0.00 0.00 2.67
2466 6782 4.886755 TGAGATGGATTTGAAGGGGATT 57.113 40.909 0.00 0.00 0.00 3.01
2467 6783 4.540715 GTTGAGATGGATTTGAAGGGGAT 58.459 43.478 0.00 0.00 0.00 3.85
2468 6784 3.309121 GGTTGAGATGGATTTGAAGGGGA 60.309 47.826 0.00 0.00 0.00 4.81
2469 6785 3.026694 GGTTGAGATGGATTTGAAGGGG 58.973 50.000 0.00 0.00 0.00 4.79
2470 6786 2.684881 CGGTTGAGATGGATTTGAAGGG 59.315 50.000 0.00 0.00 0.00 3.95
2471 6787 3.609853 TCGGTTGAGATGGATTTGAAGG 58.390 45.455 0.00 0.00 0.00 3.46
2472 6788 4.455533 TGTTCGGTTGAGATGGATTTGAAG 59.544 41.667 0.00 0.00 0.00 3.02
2473 6789 4.393834 TGTTCGGTTGAGATGGATTTGAA 58.606 39.130 0.00 0.00 0.00 2.69
2474 6790 4.014569 TGTTCGGTTGAGATGGATTTGA 57.985 40.909 0.00 0.00 0.00 2.69
2475 6791 4.379813 CCTTGTTCGGTTGAGATGGATTTG 60.380 45.833 0.00 0.00 0.00 2.32
2476 6792 3.758554 CCTTGTTCGGTTGAGATGGATTT 59.241 43.478 0.00 0.00 0.00 2.17
2477 6793 3.347216 CCTTGTTCGGTTGAGATGGATT 58.653 45.455 0.00 0.00 0.00 3.01
2478 6794 2.941415 GCCTTGTTCGGTTGAGATGGAT 60.941 50.000 0.00 0.00 0.00 3.41
2479 6795 1.610624 GCCTTGTTCGGTTGAGATGGA 60.611 52.381 0.00 0.00 0.00 3.41
2480 6796 0.804989 GCCTTGTTCGGTTGAGATGG 59.195 55.000 0.00 0.00 0.00 3.51
2481 6797 0.804989 GGCCTTGTTCGGTTGAGATG 59.195 55.000 0.00 0.00 0.00 2.90
2482 6798 0.693049 AGGCCTTGTTCGGTTGAGAT 59.307 50.000 0.00 0.00 0.00 2.75
2483 6799 1.344065 TAGGCCTTGTTCGGTTGAGA 58.656 50.000 12.58 0.00 0.00 3.27
2484 6800 2.178912 TTAGGCCTTGTTCGGTTGAG 57.821 50.000 12.58 0.00 0.00 3.02
2485 6801 2.500229 CTTTAGGCCTTGTTCGGTTGA 58.500 47.619 12.58 0.00 0.00 3.18
2486 6802 1.539827 CCTTTAGGCCTTGTTCGGTTG 59.460 52.381 12.58 0.00 0.00 3.77
2487 6803 1.422402 TCCTTTAGGCCTTGTTCGGTT 59.578 47.619 12.58 0.00 34.44 4.44
2488 6804 1.061546 TCCTTTAGGCCTTGTTCGGT 58.938 50.000 12.58 0.00 34.44 4.69
2489 6805 2.420058 ATCCTTTAGGCCTTGTTCGG 57.580 50.000 12.58 5.17 34.44 4.30
2490 6806 2.683362 GGAATCCTTTAGGCCTTGTTCG 59.317 50.000 12.58 0.00 34.44 3.95
2491 6807 3.024547 GGGAATCCTTTAGGCCTTGTTC 58.975 50.000 12.58 6.74 34.44 3.18
2492 6808 2.292257 GGGGAATCCTTTAGGCCTTGTT 60.292 50.000 12.58 0.00 34.44 2.83
2493 6809 1.288037 GGGGAATCCTTTAGGCCTTGT 59.712 52.381 12.58 0.00 34.44 3.16
2494 6810 1.750682 CGGGGAATCCTTTAGGCCTTG 60.751 57.143 12.58 1.17 34.44 3.61
2495 6811 0.551396 CGGGGAATCCTTTAGGCCTT 59.449 55.000 12.58 0.00 34.44 4.35
2499 6815 1.227853 CGCCGGGGAATCCTTTAGG 60.228 63.158 14.46 0.00 0.00 2.69
2501 6817 1.266160 TGACGCCGGGGAATCCTTTA 61.266 55.000 27.23 0.00 0.00 1.85
2579 6895 4.797604 GCAAAGAGAGTGACAGAGCTGTAA 60.798 45.833 2.65 0.00 45.05 2.41
2580 6896 3.305676 GCAAAGAGAGTGACAGAGCTGTA 60.306 47.826 2.65 0.00 45.05 2.74
2602 6918 3.701604 GACGTAGCAGTGCCCCTCG 62.702 68.421 12.58 13.55 0.00 4.63
2604 6920 1.990060 ATGACGTAGCAGTGCCCCT 60.990 57.895 12.58 0.00 0.00 4.79
2607 6923 1.815421 CCCATGACGTAGCAGTGCC 60.815 63.158 12.58 0.00 0.00 5.01
2608 6924 1.815421 CCCCATGACGTAGCAGTGC 60.815 63.158 7.13 7.13 0.00 4.40
2612 6928 0.036765 GACAACCCCATGACGTAGCA 60.037 55.000 0.00 0.00 0.00 3.49
2629 6945 0.036765 TATGCCGACACACTTGGGAC 60.037 55.000 0.00 0.00 0.00 4.46
2715 7031 3.822167 CTACTAGTGTAGGGCTCCTTAGC 59.178 52.174 5.39 0.00 41.72 3.09
2732 7048 2.047061 CCAATGGTGCTAGCCCTACTA 58.953 52.381 13.29 1.83 0.00 1.82
2733 7049 0.839946 CCAATGGTGCTAGCCCTACT 59.160 55.000 13.29 0.22 0.00 2.57
2734 7050 0.819666 GCCAATGGTGCTAGCCCTAC 60.820 60.000 13.29 3.43 0.00 3.18
2774 7090 2.371259 GGAGACTTGGGAGGGAGGC 61.371 68.421 0.00 0.00 0.00 4.70
2784 7100 0.318699 TCGAGTTGCGTGGAGACTTG 60.319 55.000 0.00 0.00 41.80 3.16
2787 7103 2.089349 GCTCGAGTTGCGTGGAGAC 61.089 63.158 15.13 0.00 41.80 3.36
2820 7136 1.079127 CCACGTCCGAGCCATTCTT 60.079 57.895 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.