Multiple sequence alignment - TraesCS3A01G076500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3A01G076500 chr3A 100.000 5927 0 0 1 5927 47276209 47282135 0.000000e+00 10946.0
1 TraesCS3A01G076500 chr3A 83.704 675 97 5 4257 4929 47495770 47496433 5.040000e-175 625.0
2 TraesCS3A01G076500 chr3A 80.976 594 56 30 890 1466 47491944 47492497 9.190000e-113 418.0
3 TraesCS3A01G076500 chr3B 93.768 1733 95 9 3326 5058 59458532 59460251 0.000000e+00 2590.0
4 TraesCS3A01G076500 chr3B 91.129 1116 69 19 4825 5927 59532069 59533167 0.000000e+00 1485.0
5 TraesCS3A01G076500 chr3B 83.078 1111 71 59 550 1613 59456727 59457767 0.000000e+00 902.0
6 TraesCS3A01G076500 chr3B 83.922 566 87 4 4257 4820 59725927 59726490 6.760000e-149 538.0
7 TraesCS3A01G076500 chr3B 84.466 515 47 12 2705 3207 59458034 59458527 1.490000e-130 477.0
8 TraesCS3A01G076500 chr3B 84.275 407 25 18 5419 5814 59461166 59461544 1.570000e-95 361.0
9 TraesCS3A01G076500 chr3B 83.333 324 23 16 1 306 59455965 59456275 2.720000e-68 270.0
10 TraesCS3A01G076500 chr3B 91.216 148 6 7 382 527 59456454 59456596 1.690000e-45 195.0
11 TraesCS3A01G076500 chr3B 79.859 283 39 13 1935 2205 105471508 105471784 2.180000e-44 191.0
12 TraesCS3A01G076500 chr3B 88.136 59 7 0 5729 5787 810311385 810311327 2.960000e-08 71.3
13 TraesCS3A01G076500 chr3D 92.565 1735 90 20 3345 5058 37063861 37062145 0.000000e+00 2453.0
14 TraesCS3A01G076500 chr3D 85.635 2172 186 58 555 2687 37066505 37064421 0.000000e+00 2167.0
15 TraesCS3A01G076500 chr3D 83.284 682 94 6 4257 4929 37232769 37233439 1.410000e-170 610.0
16 TraesCS3A01G076500 chr3D 82.969 229 25 10 297 521 37066814 37066596 1.690000e-45 195.0
17 TraesCS3A01G076500 chr3D 89.157 83 4 2 213 295 37067014 37066937 1.360000e-16 99.0
18 TraesCS3A01G076500 chr3D 91.176 68 6 0 3680 3747 234324223 234324290 6.320000e-15 93.5
19 TraesCS3A01G076500 chr3D 79.577 142 17 6 172 306 37067504 37067368 2.270000e-14 91.6
20 TraesCS3A01G076500 chr3D 75.728 206 26 11 5601 5783 37061522 37061318 1.370000e-11 82.4
21 TraesCS3A01G076500 chr3D 95.652 46 2 0 5738 5783 37059487 37059442 2.290000e-09 75.0
22 TraesCS3A01G076500 chr4D 80.863 533 86 4 3566 4095 468260012 468260531 7.150000e-109 405.0
23 TraesCS3A01G076500 chr5D 82.516 469 40 22 930 1390 402724806 402725240 2.020000e-99 374.0
24 TraesCS3A01G076500 chr5D 83.566 286 30 8 1928 2205 538668808 538669084 9.860000e-63 252.0
25 TraesCS3A01G076500 chr5D 97.826 46 1 0 5738 5783 530615315 530615270 4.920000e-11 80.5
26 TraesCS3A01G076500 chr5A 82.468 462 34 35 942 1392 600462510 600462085 1.570000e-95 361.0
27 TraesCS3A01G076500 chr7A 81.994 311 31 9 1066 1369 491964527 491964819 2.130000e-59 241.0
28 TraesCS3A01G076500 chr7A 81.818 242 37 7 1917 2155 49596028 49595791 4.690000e-46 196.0
29 TraesCS3A01G076500 chr7A 94.000 50 3 0 1106 1155 12075507 12075458 6.370000e-10 76.8
30 TraesCS3A01G076500 chr6A 81.553 309 38 12 1068 1368 62652155 62651858 2.760000e-58 237.0
31 TraesCS3A01G076500 chr2B 81.455 275 41 8 1930 2195 653795716 653795989 3.600000e-52 217.0
32 TraesCS3A01G076500 chr4B 79.795 292 39 13 1930 2205 27124781 27124494 1.690000e-45 195.0
33 TraesCS3A01G076500 chr2D 78.648 281 46 9 1930 2196 547450148 547450428 2.200000e-39 174.0
34 TraesCS3A01G076500 chr2D 95.652 46 2 0 5738 5783 622294163 622294118 2.290000e-09 75.0
35 TraesCS3A01G076500 chrUn 79.920 249 37 10 1959 2196 31890728 31890974 2.840000e-38 171.0
36 TraesCS3A01G076500 chrUn 79.920 249 37 10 1959 2196 31901480 31901726 2.840000e-38 171.0
37 TraesCS3A01G076500 chr7D 91.379 116 9 1 3949 4063 77522598 77522483 2.210000e-34 158.0
38 TraesCS3A01G076500 chr7D 88.060 67 8 0 5719 5785 180255422 180255356 4.920000e-11 80.5
39 TraesCS3A01G076500 chr6D 96.667 90 3 0 1309 1398 27404592 27404503 3.700000e-32 150.0
40 TraesCS3A01G076500 chr1A 95.455 66 3 0 1092 1157 491133579 491133514 8.120000e-19 106.0
41 TraesCS3A01G076500 chr7B 93.333 45 3 0 5729 5773 612401177 612401133 3.830000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3A01G076500 chr3A 47276209 47282135 5926 False 10946.000000 10946 100.000000 1 5927 1 chr3A.!!$F1 5926
1 TraesCS3A01G076500 chr3A 47491944 47496433 4489 False 521.500000 625 82.340000 890 4929 2 chr3A.!!$F2 4039
2 TraesCS3A01G076500 chr3B 59532069 59533167 1098 False 1485.000000 1485 91.129000 4825 5927 1 chr3B.!!$F1 1102
3 TraesCS3A01G076500 chr3B 59455965 59461544 5579 False 799.166667 2590 86.689333 1 5814 6 chr3B.!!$F4 5813
4 TraesCS3A01G076500 chr3B 59725927 59726490 563 False 538.000000 538 83.922000 4257 4820 1 chr3B.!!$F2 563
5 TraesCS3A01G076500 chr3D 37059442 37067504 8062 True 737.571429 2453 85.897571 172 5783 7 chr3D.!!$R1 5611
6 TraesCS3A01G076500 chr3D 37232769 37233439 670 False 610.000000 610 83.284000 4257 4929 1 chr3D.!!$F1 672
7 TraesCS3A01G076500 chr4D 468260012 468260531 519 False 405.000000 405 80.863000 3566 4095 1 chr4D.!!$F1 529

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
963 1791 0.045469 AGAATCCTCTCCCCTTGGCT 59.955 55.000 0.00 0.00 0.00 4.75 F
964 1792 0.472044 GAATCCTCTCCCCTTGGCTC 59.528 60.000 0.00 0.00 0.00 4.70 F
965 1793 0.990818 AATCCTCTCCCCTTGGCTCC 60.991 60.000 0.00 0.00 0.00 4.70 F
2451 3551 1.135915 GCTCCACGAGTGACAGATCAT 59.864 52.381 4.59 0.00 37.14 2.45 F
2807 3910 0.241481 CCGGCGATAGTCCTTAGAGC 59.759 60.000 9.30 0.00 37.48 4.09 F
4250 6945 0.025001 GGTTTCGTGTGCATCGATCG 59.975 55.000 9.36 9.36 37.18 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2779 3882 0.178958 ACTATCGCCGGGGAGAATCT 60.179 55.000 26.38 11.89 33.73 2.40 R
2780 3883 0.244178 GACTATCGCCGGGGAGAATC 59.756 60.000 26.38 17.89 0.00 2.52 R
2784 3887 0.538977 TAAGGACTATCGCCGGGGAG 60.539 60.000 26.38 16.06 0.00 4.30 R
4231 6926 0.025001 CGATCGATGCACACGAAACC 59.975 55.000 18.85 11.51 42.80 3.27 R
4383 7078 1.210155 GTTGTTGAGCACGATGCCC 59.790 57.895 6.39 0.00 46.52 5.36 R
5605 11256 0.392998 CCAGTAGATGCCGCAAACCT 60.393 55.000 0.00 0.00 0.00 3.50 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 9.407380 AGGTCTATTTTGATTTATGTATGCACA 57.593 29.630 0.00 0.00 39.52 4.57
41 42 9.669353 GGTCTATTTTGATTTATGTATGCACAG 57.331 33.333 0.00 0.00 38.30 3.66
168 179 2.616842 TCTTTTCTTTGGCCAAGTCGAC 59.383 45.455 19.48 7.70 33.66 4.20
169 180 2.045561 TTTCTTTGGCCAAGTCGACA 57.954 45.000 19.48 7.21 33.66 4.35
190 201 4.015084 CAATGCTCAAGGACCAGAGAATT 58.985 43.478 15.85 14.00 40.05 2.17
206 220 3.825308 AGAATTGTACTGCAAACATGCG 58.175 40.909 2.62 0.00 40.91 4.73
207 221 1.981254 ATTGTACTGCAAACATGCGC 58.019 45.000 0.00 0.00 40.91 6.09
209 223 0.880441 TGTACTGCAAACATGCGCAT 59.120 45.000 19.28 19.28 37.54 4.73
242 702 1.363443 CAGTTTTGCCGCCATGTGT 59.637 52.632 0.00 0.00 0.00 3.72
246 706 1.067915 GTTTTGCCGCCATGTGTACAT 60.068 47.619 0.00 0.00 36.96 2.29
275 735 9.538508 TTTATGAATACTCTCTGACATGACATG 57.461 33.333 14.02 14.02 0.00 3.21
276 736 6.780457 TGAATACTCTCTGACATGACATGA 57.220 37.500 22.19 0.00 0.00 3.07
303 763 1.076533 CGCTTGTAATGGCGTCTCGT 61.077 55.000 0.00 0.00 45.34 4.18
318 948 1.067364 TCTCGTTTACAAGCGTGACCA 59.933 47.619 6.65 0.00 31.94 4.02
345 983 3.772025 AGTGACATCCTTCCTCCTAGTTG 59.228 47.826 0.00 0.00 0.00 3.16
346 984 3.515901 GTGACATCCTTCCTCCTAGTTGT 59.484 47.826 0.00 0.00 0.00 3.32
347 985 4.020128 GTGACATCCTTCCTCCTAGTTGTT 60.020 45.833 0.00 0.00 0.00 2.83
366 1004 6.887626 TTGTTCCCTACAAACTTGGATTAC 57.112 37.500 0.00 0.00 43.58 1.89
367 1005 5.318630 TGTTCCCTACAAACTTGGATTACC 58.681 41.667 0.00 0.00 32.64 2.85
460 1101 9.528018 TTTCACTTTGTTCTTCCAAAATGATAC 57.472 29.630 0.00 0.00 39.45 2.24
523 1164 5.492854 CACGATTTCATTAACGAGACCATG 58.507 41.667 0.00 0.00 0.00 3.66
525 1168 5.872617 ACGATTTCATTAACGAGACCATGAA 59.127 36.000 0.00 0.00 34.54 2.57
527 1170 5.545658 TTTCATTAACGAGACCATGAAGC 57.454 39.130 0.00 0.00 37.06 3.86
529 1172 4.183865 TCATTAACGAGACCATGAAGCTG 58.816 43.478 0.00 0.00 0.00 4.24
530 1173 3.953712 TTAACGAGACCATGAAGCTGA 57.046 42.857 0.00 0.00 0.00 4.26
532 1175 2.593346 ACGAGACCATGAAGCTGATC 57.407 50.000 0.00 0.00 0.00 2.92
541 1184 2.408271 TGAAGCTGATCATGGTCACC 57.592 50.000 4.01 0.00 0.00 4.02
542 1185 1.911357 TGAAGCTGATCATGGTCACCT 59.089 47.619 4.01 0.41 0.00 4.00
545 1188 1.209019 AGCTGATCATGGTCACCTCAC 59.791 52.381 4.01 0.00 0.00 3.51
547 1245 0.911769 TGATCATGGTCACCTCACCC 59.088 55.000 4.01 0.00 35.26 4.61
550 1248 1.377725 CATGGTCACCTCACCCTGC 60.378 63.158 0.00 0.00 35.26 4.85
553 1251 1.302832 GGTCACCTCACCCTGCAAG 60.303 63.158 0.00 0.00 0.00 4.01
558 1256 1.673665 CCTCACCCTGCAAGCTGAC 60.674 63.158 0.16 0.00 0.00 3.51
575 1273 4.258702 CTGACAAGCACCAAGTAGTACT 57.741 45.455 0.00 0.00 0.00 2.73
608 1389 0.108585 TCTGCTTCCCTGTCCACAAC 59.891 55.000 0.00 0.00 0.00 3.32
620 1401 3.799366 TGTCCACAACGAGAGCTAAAAA 58.201 40.909 0.00 0.00 0.00 1.94
759 1554 0.542333 GTCTACCCTTCCCCTTCTGC 59.458 60.000 0.00 0.00 0.00 4.26
769 1564 4.467438 CCTTCCCCTTCTGCATTTTGTATT 59.533 41.667 0.00 0.00 0.00 1.89
770 1565 5.404466 TTCCCCTTCTGCATTTTGTATTG 57.596 39.130 0.00 0.00 0.00 1.90
779 1577 6.142139 TCTGCATTTTGTATTGTGAAACTCG 58.858 36.000 0.00 0.00 38.04 4.18
783 1581 5.427036 TTTTGTATTGTGAAACTCGGTCC 57.573 39.130 0.00 0.00 38.04 4.46
788 1586 1.348064 TGTGAAACTCGGTCCCTGAT 58.652 50.000 0.00 0.00 38.04 2.90
789 1587 1.275291 TGTGAAACTCGGTCCCTGATC 59.725 52.381 0.00 0.00 38.04 2.92
790 1588 0.530744 TGAAACTCGGTCCCTGATCG 59.469 55.000 0.00 0.00 37.53 3.69
791 1589 0.531200 GAAACTCGGTCCCTGATCGT 59.469 55.000 0.00 0.00 37.45 3.73
792 1590 0.246635 AAACTCGGTCCCTGATCGTG 59.753 55.000 0.00 0.00 37.45 4.35
793 1591 0.898789 AACTCGGTCCCTGATCGTGT 60.899 55.000 0.00 0.00 43.14 4.49
794 1592 1.313812 ACTCGGTCCCTGATCGTGTC 61.314 60.000 0.00 0.00 38.24 3.67
834 1632 5.712217 TCACAACGAGAAAACTAACAGTG 57.288 39.130 0.00 0.00 0.00 3.66
839 1637 7.216317 CACAACGAGAAAACTAACAGTGAAAAG 59.784 37.037 0.00 0.00 0.00 2.27
840 1638 6.980051 ACGAGAAAACTAACAGTGAAAAGT 57.020 33.333 0.00 0.00 0.00 2.66
952 1780 3.019564 CACCATCACCCAAAGAATCCTC 58.980 50.000 0.00 0.00 0.00 3.71
953 1781 2.922283 ACCATCACCCAAAGAATCCTCT 59.078 45.455 0.00 0.00 0.00 3.69
954 1782 3.054065 ACCATCACCCAAAGAATCCTCTC 60.054 47.826 0.00 0.00 0.00 3.20
955 1783 3.549794 CATCACCCAAAGAATCCTCTCC 58.450 50.000 0.00 0.00 0.00 3.71
956 1784 1.916181 TCACCCAAAGAATCCTCTCCC 59.084 52.381 0.00 0.00 0.00 4.30
957 1785 1.064389 CACCCAAAGAATCCTCTCCCC 60.064 57.143 0.00 0.00 0.00 4.81
958 1786 1.203622 ACCCAAAGAATCCTCTCCCCT 60.204 52.381 0.00 0.00 0.00 4.79
959 1787 1.925959 CCCAAAGAATCCTCTCCCCTT 59.074 52.381 0.00 0.00 0.00 3.95
960 1788 2.357569 CCCAAAGAATCCTCTCCCCTTG 60.358 54.545 0.00 0.00 0.00 3.61
961 1789 2.357569 CCAAAGAATCCTCTCCCCTTGG 60.358 54.545 0.00 0.00 32.25 3.61
962 1790 0.922626 AAGAATCCTCTCCCCTTGGC 59.077 55.000 0.00 0.00 0.00 4.52
963 1791 0.045469 AGAATCCTCTCCCCTTGGCT 59.955 55.000 0.00 0.00 0.00 4.75
964 1792 0.472044 GAATCCTCTCCCCTTGGCTC 59.528 60.000 0.00 0.00 0.00 4.70
965 1793 0.990818 AATCCTCTCCCCTTGGCTCC 60.991 60.000 0.00 0.00 0.00 4.70
966 1794 3.474570 CCTCTCCCCTTGGCTCCG 61.475 72.222 0.00 0.00 0.00 4.63
967 1795 2.685380 CTCTCCCCTTGGCTCCGT 60.685 66.667 0.00 0.00 0.00 4.69
968 1796 2.683933 TCTCCCCTTGGCTCCGTC 60.684 66.667 0.00 0.00 0.00 4.79
969 1797 3.787001 CTCCCCTTGGCTCCGTCC 61.787 72.222 0.00 0.00 0.00 4.79
972 1800 4.410400 CCCTTGGCTCCGTCCCAC 62.410 72.222 0.00 0.00 30.65 4.61
973 1801 3.636231 CCTTGGCTCCGTCCCACA 61.636 66.667 0.00 0.00 30.65 4.17
1189 2044 4.253257 GCTCGAGGGCGTCCGTAG 62.253 72.222 15.58 0.00 38.98 3.51
1190 2045 3.584052 CTCGAGGGCGTCCGTAGG 61.584 72.222 3.91 0.00 43.53 3.18
1587 2456 3.954740 TATGGCCCGTGGGTCCCTT 62.955 63.158 10.00 1.44 39.60 3.95
1630 2502 3.302347 GAGGTCGCTGTCTGGTGGG 62.302 68.421 0.00 0.00 0.00 4.61
1671 2556 2.264794 CACTGTACGGTGGGCCTC 59.735 66.667 24.65 0.00 33.95 4.70
1683 2568 2.202878 GGCCTCGCATGCTTACGA 60.203 61.111 17.13 4.39 36.73 3.43
1687 2572 1.864711 GCCTCGCATGCTTACGAAATA 59.135 47.619 17.13 0.00 37.94 1.40
1697 2582 2.862536 GCTTACGAAATAGGAACCGACC 59.137 50.000 0.00 0.00 0.00 4.79
1698 2583 3.429960 GCTTACGAAATAGGAACCGACCT 60.430 47.826 0.00 0.00 43.32 3.85
1759 2644 6.835174 AGTGGTAGCTCAATGAATATGACAT 58.165 36.000 0.00 0.00 0.00 3.06
1838 2723 6.893958 AGTACTATGTCGAAGCAAAGAATG 57.106 37.500 0.00 0.00 0.00 2.67
1842 2731 7.849804 ACTATGTCGAAGCAAAGAATGTAAT 57.150 32.000 0.00 0.00 0.00 1.89
1882 2771 3.855689 AAATGCCAAATGAAGACCGAG 57.144 42.857 0.00 0.00 0.00 4.63
1883 2772 2.496899 ATGCCAAATGAAGACCGAGT 57.503 45.000 0.00 0.00 0.00 4.18
1886 2775 2.293122 TGCCAAATGAAGACCGAGTTTG 59.707 45.455 0.00 0.00 0.00 2.93
1898 2787 1.209504 CCGAGTTTGATGGAGGCCTTA 59.790 52.381 6.77 0.00 0.00 2.69
1900 2924 3.545703 CGAGTTTGATGGAGGCCTTAAT 58.454 45.455 6.77 3.22 0.00 1.40
1932 2956 1.454276 GACGAATGTACGGTGTGTGTG 59.546 52.381 0.00 0.00 37.61 3.82
1946 2972 6.127675 ACGGTGTGTGTGTAAATTTTAAGGTT 60.128 34.615 0.00 0.00 0.00 3.50
1972 2998 8.289618 TGAAATGTGTTAAAATGAGAGCTACAC 58.710 33.333 4.10 4.10 36.02 2.90
1979 3005 8.559536 TGTTAAAATGAGAGCTACACAAAGAAG 58.440 33.333 0.00 0.00 0.00 2.85
1982 3008 3.902150 TGAGAGCTACACAAAGAAGACG 58.098 45.455 0.00 0.00 0.00 4.18
1986 3012 6.072119 TGAGAGCTACACAAAGAAGACGAATA 60.072 38.462 0.00 0.00 0.00 1.75
1988 3014 6.754209 AGAGCTACACAAAGAAGACGAATATG 59.246 38.462 0.00 0.00 0.00 1.78
1992 3018 4.154195 ACACAAAGAAGACGAATATGTGGC 59.846 41.667 7.76 0.00 40.60 5.01
1999 3025 7.681939 AGAAGACGAATATGTGGCTTTTTAA 57.318 32.000 0.00 0.00 0.00 1.52
2005 3031 9.730420 GACGAATATGTGGCTTTTTAACATATT 57.270 29.630 16.20 16.20 42.87 1.28
2034 3060 6.979817 TGTTCATCTTCAAAGTCCACAATTTG 59.020 34.615 0.00 0.00 37.67 2.32
2040 3066 7.158021 TCTTCAAAGTCCACAATTTGTGTTTT 58.842 30.769 24.01 18.13 46.45 2.43
2041 3067 7.659390 TCTTCAAAGTCCACAATTTGTGTTTTT 59.341 29.630 24.01 17.86 46.45 1.94
2042 3068 8.833231 TTCAAAGTCCACAATTTGTGTTTTTA 57.167 26.923 24.01 12.36 46.45 1.52
2043 3069 9.442047 TTCAAAGTCCACAATTTGTGTTTTTAT 57.558 25.926 24.01 6.89 46.45 1.40
2044 3070 9.442047 TCAAAGTCCACAATTTGTGTTTTTATT 57.558 25.926 24.01 11.06 46.45 1.40
2045 3071 9.488124 CAAAGTCCACAATTTGTGTTTTTATTG 57.512 29.630 24.01 16.97 46.45 1.90
2046 3072 7.245419 AGTCCACAATTTGTGTTTTTATTGC 57.755 32.000 24.01 6.94 46.45 3.56
2048 3074 7.011295 AGTCCACAATTTGTGTTTTTATTGCTG 59.989 33.333 24.01 7.88 46.45 4.41
2049 3075 5.908499 CCACAATTTGTGTTTTTATTGCTGC 59.092 36.000 24.01 0.00 46.45 5.25
2052 3078 6.538021 ACAATTTGTGTTTTTATTGCTGCTCA 59.462 30.769 0.15 0.00 37.01 4.26
2062 3088 3.587797 ATTGCTGCTCACAATTCAAGG 57.412 42.857 0.00 0.00 34.05 3.61
2067 3093 4.156556 TGCTGCTCACAATTCAAGGTATTC 59.843 41.667 0.00 0.00 0.00 1.75
2116 3142 9.787532 ACACATTACATCTTTAAATACATGTGC 57.212 29.630 9.11 0.00 38.32 4.57
2117 3143 9.786105 CACATTACATCTTTAAATACATGTGCA 57.214 29.630 9.11 0.00 31.83 4.57
2181 3212 5.133221 TCTAAATTAAGGCCTTCATGGAGC 58.867 41.667 24.49 0.00 38.35 4.70
2183 3214 2.717639 TTAAGGCCTTCATGGAGCTC 57.282 50.000 24.49 4.71 38.35 4.09
2196 3227 2.699954 TGGAGCTCGGTCTTCAAAATC 58.300 47.619 7.83 0.00 0.00 2.17
2197 3228 2.010497 GGAGCTCGGTCTTCAAAATCC 58.990 52.381 7.83 0.00 0.00 3.01
2198 3229 1.661112 GAGCTCGGTCTTCAAAATCCG 59.339 52.381 0.00 0.00 43.65 4.18
2214 3245 4.571372 AATCCGCTACTCTAGTTACAGC 57.429 45.455 0.00 0.00 0.00 4.40
2310 3341 4.404715 TCATCCTAGCTACCCAGTTTGTAC 59.595 45.833 0.00 0.00 0.00 2.90
2334 3365 7.255569 ACGACTAAATTTGGCTTTAATTAGGC 58.744 34.615 0.00 4.55 40.84 3.93
2354 3385 1.417890 CCATCCCCTTAGCTGTAGTGG 59.582 57.143 0.00 0.00 0.00 4.00
2396 3427 7.039784 GCCTATCCAGTTGGCAATATTTTCATA 60.040 37.037 1.92 0.00 46.41 2.15
2400 3431 7.944061 TCCAGTTGGCAATATTTTCATATCTG 58.056 34.615 1.92 1.12 34.44 2.90
2401 3432 7.560991 TCCAGTTGGCAATATTTTCATATCTGT 59.439 33.333 1.92 0.00 34.44 3.41
2429 3529 5.245751 TGGCTGAGATCTTAGAATCATCTCC 59.754 44.000 18.18 7.49 41.29 3.71
2451 3551 1.135915 GCTCCACGAGTGACAGATCAT 59.864 52.381 4.59 0.00 37.14 2.45
2452 3552 2.359214 GCTCCACGAGTGACAGATCATA 59.641 50.000 4.59 0.00 37.14 2.15
2457 3557 6.406370 TCCACGAGTGACAGATCATAAAAAT 58.594 36.000 4.59 0.00 37.14 1.82
2458 3558 6.313658 TCCACGAGTGACAGATCATAAAAATG 59.686 38.462 4.59 0.00 37.14 2.32
2489 3589 6.567602 ATGGCTTATGGGGTATCTTATCTC 57.432 41.667 0.00 0.00 0.00 2.75
2494 3594 7.259161 GCTTATGGGGTATCTTATCTCTAACG 58.741 42.308 0.00 0.00 0.00 3.18
2514 3614 5.358298 ACGGTAAACAAATCAAGAGAAGC 57.642 39.130 0.00 0.00 0.00 3.86
2604 3706 2.991190 GCCATGTGATGAACTGCAAAAG 59.009 45.455 0.00 0.00 0.00 2.27
2622 3724 8.988064 TGCAAAAGTTTCTTACATTGTTGTAA 57.012 26.923 0.00 0.00 44.16 2.41
2642 3744 5.824097 TGTAAAAAGGGAGTACTTCACAACC 59.176 40.000 2.92 0.00 0.00 3.77
2651 3753 6.539103 GGGAGTACTTCACAACCATTAAGATC 59.461 42.308 2.92 0.00 0.00 2.75
2654 3757 7.106239 AGTACTTCACAACCATTAAGATCTGG 58.894 38.462 0.00 0.00 38.55 3.86
2677 3780 9.143631 CTGGATTACTATTTTGCAAAAAGAAGG 57.856 33.333 27.10 16.70 0.00 3.46
2698 3801 8.031277 AGAAGGTTTTGCATTTGATTTAGCTAG 58.969 33.333 0.00 0.00 0.00 3.42
2700 3803 8.348285 AGGTTTTGCATTTGATTTAGCTAGTA 57.652 30.769 0.00 0.00 0.00 1.82
2701 3804 8.244113 AGGTTTTGCATTTGATTTAGCTAGTAC 58.756 33.333 0.00 0.00 0.00 2.73
2702 3805 8.026607 GGTTTTGCATTTGATTTAGCTAGTACA 58.973 33.333 0.00 0.00 0.00 2.90
2703 3806 9.405587 GTTTTGCATTTGATTTAGCTAGTACAA 57.594 29.630 0.00 0.00 0.00 2.41
2705 3808 9.571810 TTTGCATTTGATTTAGCTAGTACAATG 57.428 29.630 0.00 2.54 0.00 2.82
2706 3809 8.504812 TGCATTTGATTTAGCTAGTACAATGA 57.495 30.769 14.27 0.00 0.00 2.57
2707 3810 9.123902 TGCATTTGATTTAGCTAGTACAATGAT 57.876 29.630 14.27 4.35 0.00 2.45
2708 3811 9.956720 GCATTTGATTTAGCTAGTACAATGATT 57.043 29.630 14.27 0.00 0.00 2.57
2743 3846 3.807071 GCATTCTCCTTAGCTTAGCTCAC 59.193 47.826 11.09 0.00 40.44 3.51
2746 3849 2.111384 CTCCTTAGCTTAGCTCACCCA 58.889 52.381 11.09 0.00 40.44 4.51
2772 3875 8.253113 AGTTGACAACATTTTCATCTCTGTTTT 58.747 29.630 20.08 0.00 29.74 2.43
2773 3876 8.872845 GTTGACAACATTTTCATCTCTGTTTTT 58.127 29.630 13.52 0.00 29.74 1.94
2774 3877 8.410030 TGACAACATTTTCATCTCTGTTTTTG 57.590 30.769 0.00 0.00 29.74 2.44
2775 3878 7.492020 TGACAACATTTTCATCTCTGTTTTTGG 59.508 33.333 0.00 0.00 29.74 3.28
2776 3879 6.258507 ACAACATTTTCATCTCTGTTTTTGGC 59.741 34.615 0.00 0.00 29.74 4.52
2777 3880 6.165700 ACATTTTCATCTCTGTTTTTGGCT 57.834 33.333 0.00 0.00 0.00 4.75
2778 3881 5.987347 ACATTTTCATCTCTGTTTTTGGCTG 59.013 36.000 0.00 0.00 0.00 4.85
2779 3882 5.850557 TTTTCATCTCTGTTTTTGGCTGA 57.149 34.783 0.00 0.00 0.00 4.26
2780 3883 5.443185 TTTCATCTCTGTTTTTGGCTGAG 57.557 39.130 0.00 0.00 34.55 3.35
2781 3884 4.356405 TCATCTCTGTTTTTGGCTGAGA 57.644 40.909 0.00 0.00 42.31 3.27
2782 3885 4.914983 TCATCTCTGTTTTTGGCTGAGAT 58.085 39.130 8.28 8.28 45.84 2.75
2783 3886 5.319453 TCATCTCTGTTTTTGGCTGAGATT 58.681 37.500 10.53 0.00 43.98 2.40
2784 3887 5.413833 TCATCTCTGTTTTTGGCTGAGATTC 59.586 40.000 10.53 0.00 43.98 2.52
2785 3888 4.978099 TCTCTGTTTTTGGCTGAGATTCT 58.022 39.130 0.00 0.00 36.48 2.40
2786 3889 4.999950 TCTCTGTTTTTGGCTGAGATTCTC 59.000 41.667 6.73 6.73 36.48 2.87
2787 3890 4.074970 TCTGTTTTTGGCTGAGATTCTCC 58.925 43.478 11.12 0.00 0.00 3.71
2801 3904 2.203509 CTCCCCGGCGATAGTCCT 60.204 66.667 9.30 0.00 37.48 3.85
2807 3910 0.241481 CCGGCGATAGTCCTTAGAGC 59.759 60.000 9.30 0.00 37.48 4.09
2810 3913 1.000052 GGCGATAGTCCTTAGAGCCAC 60.000 57.143 0.00 0.00 42.37 5.01
2824 3944 2.779755 AGCCACACGGATCAATACAA 57.220 45.000 0.00 0.00 0.00 2.41
2835 3955 4.447724 CGGATCAATACAAATGGTACTCCG 59.552 45.833 0.00 0.00 37.08 4.63
2842 3962 4.481368 ACAAATGGTACTCCGCATCTTA 57.519 40.909 0.00 0.00 36.30 2.10
2851 3971 2.691526 ACTCCGCATCTTATCCGTAACA 59.308 45.455 0.00 0.00 0.00 2.41
2878 3998 2.824341 CAAATCAAGAGAGGCCTTTGCT 59.176 45.455 6.77 0.00 37.74 3.91
2883 4003 2.197283 AGAGAGGCCTTTGCTTTCTG 57.803 50.000 6.77 0.00 37.74 3.02
2910 4030 0.764752 CCTCCACCTACCCCATCTCC 60.765 65.000 0.00 0.00 0.00 3.71
2973 5238 6.054941 GTGTGTCACCACCATGATTCATATA 58.945 40.000 0.00 0.00 41.09 0.86
2975 5240 6.099557 TGTGTCACCACCATGATTCATATAGA 59.900 38.462 0.00 0.00 41.09 1.98
2979 5244 8.753133 GTCACCACCATGATTCATATAGATCTA 58.247 37.037 4.57 4.57 0.00 1.98
2999 5264 9.709495 AGATCTATGCTAATCATTTTCTCTCAC 57.291 33.333 0.00 0.00 36.63 3.51
3000 5265 8.845413 ATCTATGCTAATCATTTTCTCTCACC 57.155 34.615 0.00 0.00 36.63 4.02
3003 5268 6.748333 TGCTAATCATTTTCTCTCACCTTG 57.252 37.500 0.00 0.00 0.00 3.61
3016 5281 4.543590 CTCACCTTGGTGAGTAGTTCAT 57.456 45.455 31.13 0.00 44.16 2.57
3019 5284 2.002586 CCTTGGTGAGTAGTTCATGCG 58.997 52.381 0.00 0.00 38.29 4.73
3025 5290 3.057019 GTGAGTAGTTCATGCGTGTTGA 58.943 45.455 5.68 0.00 38.29 3.18
3094 5369 4.900635 ACCTAATTTGCATTGATCGGTC 57.099 40.909 0.00 0.00 0.00 4.79
3120 5395 5.406649 TCGTGGTTAATTCCATTGATTTGC 58.593 37.500 0.00 0.00 39.81 3.68
3125 5400 5.351189 GGTTAATTCCATTGATTTGCGCTTT 59.649 36.000 9.73 0.00 0.00 3.51
3164 5439 4.717233 TGCTAATTAGTTGGCCATGTTG 57.283 40.909 6.09 0.00 40.73 3.33
3175 5450 1.468054 GGCCATGTTGATTCTTCGCAC 60.468 52.381 0.00 0.00 0.00 5.34
3207 5482 6.884295 AGCCATGCTAATTAGTTTCTGTAACA 59.116 34.615 13.91 0.84 36.99 2.41
3208 5483 7.066284 AGCCATGCTAATTAGTTTCTGTAACAG 59.934 37.037 13.91 0.00 36.99 3.16
3242 5517 4.040217 TGCCAATTGTACAAGAAAGCCAAT 59.960 37.500 14.65 0.00 0.00 3.16
3259 5534 3.592898 CAATGCATGGATGGATGGATG 57.407 47.619 0.00 0.00 38.90 3.51
3262 5537 0.251653 GCATGGATGGATGGATGGCT 60.252 55.000 0.00 0.00 0.00 4.75
3263 5538 1.005097 GCATGGATGGATGGATGGCTA 59.995 52.381 0.00 0.00 0.00 3.93
3264 5539 2.944542 GCATGGATGGATGGATGGCTAG 60.945 54.545 0.00 0.00 0.00 3.42
3265 5540 0.694771 TGGATGGATGGATGGCTAGC 59.305 55.000 6.04 6.04 0.00 3.42
3266 5541 0.990374 GGATGGATGGATGGCTAGCT 59.010 55.000 15.72 0.00 0.00 3.32
3267 5542 1.339824 GGATGGATGGATGGCTAGCTG 60.340 57.143 15.72 0.00 0.00 4.24
3268 5543 1.627329 GATGGATGGATGGCTAGCTGA 59.373 52.381 15.72 1.67 0.00 4.26
3269 5544 1.510492 TGGATGGATGGCTAGCTGAA 58.490 50.000 15.72 0.90 0.00 3.02
3270 5545 1.845791 TGGATGGATGGCTAGCTGAAA 59.154 47.619 15.72 0.00 0.00 2.69
3271 5546 2.444388 TGGATGGATGGCTAGCTGAAAT 59.556 45.455 15.72 3.62 0.00 2.17
3272 5547 3.117398 TGGATGGATGGCTAGCTGAAATT 60.117 43.478 15.72 0.00 0.00 1.82
3273 5548 4.104579 TGGATGGATGGCTAGCTGAAATTA 59.895 41.667 15.72 0.00 0.00 1.40
3274 5549 5.222192 TGGATGGATGGCTAGCTGAAATTAT 60.222 40.000 15.72 1.18 0.00 1.28
3275 5550 5.713861 GGATGGATGGCTAGCTGAAATTATT 59.286 40.000 15.72 0.00 0.00 1.40
3276 5551 6.886459 GGATGGATGGCTAGCTGAAATTATTA 59.114 38.462 15.72 0.00 0.00 0.98
3277 5552 7.066766 GGATGGATGGCTAGCTGAAATTATTAG 59.933 40.741 15.72 0.00 0.00 1.73
3278 5553 6.240894 TGGATGGCTAGCTGAAATTATTAGG 58.759 40.000 15.72 0.00 0.00 2.69
3279 5554 5.649831 GGATGGCTAGCTGAAATTATTAGGG 59.350 44.000 15.72 0.00 0.00 3.53
3285 5891 7.231519 GGCTAGCTGAAATTATTAGGGTTTGAT 59.768 37.037 15.72 0.00 0.00 2.57
3294 5900 0.916086 TAGGGTTTGATCGGCCATGT 59.084 50.000 2.24 0.00 0.00 3.21
3297 5903 1.676006 GGGTTTGATCGGCCATGTTAG 59.324 52.381 2.24 0.00 0.00 2.34
3298 5904 2.639065 GGTTTGATCGGCCATGTTAGA 58.361 47.619 2.24 0.00 0.00 2.10
3299 5905 2.354821 GGTTTGATCGGCCATGTTAGAC 59.645 50.000 2.24 0.00 0.00 2.59
3300 5906 3.270877 GTTTGATCGGCCATGTTAGACT 58.729 45.455 2.24 0.00 0.00 3.24
3301 5907 4.439057 GTTTGATCGGCCATGTTAGACTA 58.561 43.478 2.24 0.00 0.00 2.59
3302 5908 4.322080 TTGATCGGCCATGTTAGACTAG 57.678 45.455 2.24 0.00 0.00 2.57
3303 5909 3.562182 TGATCGGCCATGTTAGACTAGA 58.438 45.455 2.24 0.00 0.00 2.43
3305 5911 2.730382 TCGGCCATGTTAGACTAGACA 58.270 47.619 2.24 0.00 0.00 3.41
3307 5913 3.130516 TCGGCCATGTTAGACTAGACAAG 59.869 47.826 2.24 0.00 0.00 3.16
3308 5914 3.130516 CGGCCATGTTAGACTAGACAAGA 59.869 47.826 2.24 0.00 0.00 3.02
3309 5915 4.381612 CGGCCATGTTAGACTAGACAAGAA 60.382 45.833 2.24 0.00 0.00 2.52
3310 5916 5.488341 GGCCATGTTAGACTAGACAAGAAA 58.512 41.667 0.00 0.00 0.00 2.52
3311 5917 5.582665 GGCCATGTTAGACTAGACAAGAAAG 59.417 44.000 0.00 0.00 0.00 2.62
3312 5918 6.398918 GCCATGTTAGACTAGACAAGAAAGA 58.601 40.000 0.00 0.00 0.00 2.52
3313 5919 6.874134 GCCATGTTAGACTAGACAAGAAAGAA 59.126 38.462 0.00 0.00 0.00 2.52
3314 5920 7.387948 GCCATGTTAGACTAGACAAGAAAGAAA 59.612 37.037 0.00 0.00 0.00 2.52
3315 5921 9.273016 CCATGTTAGACTAGACAAGAAAGAAAA 57.727 33.333 0.00 0.00 0.00 2.29
3319 5925 9.600646 GTTAGACTAGACAAGAAAGAAAATTGC 57.399 33.333 0.00 0.00 0.00 3.56
3320 5926 7.807977 AGACTAGACAAGAAAGAAAATTGCA 57.192 32.000 0.00 0.00 0.00 4.08
3321 5927 7.643579 AGACTAGACAAGAAAGAAAATTGCAC 58.356 34.615 0.00 0.00 0.00 4.57
3322 5928 6.430451 ACTAGACAAGAAAGAAAATTGCACG 58.570 36.000 0.00 0.00 0.00 5.34
3323 5929 4.610945 AGACAAGAAAGAAAATTGCACGG 58.389 39.130 0.00 0.00 0.00 4.94
3324 5930 4.338118 AGACAAGAAAGAAAATTGCACGGA 59.662 37.500 0.00 0.00 0.00 4.69
3325 5931 5.010012 AGACAAGAAAGAAAATTGCACGGAT 59.990 36.000 0.00 0.00 0.00 4.18
3326 5932 4.984161 ACAAGAAAGAAAATTGCACGGATG 59.016 37.500 0.00 0.00 0.00 3.51
3327 5933 4.178545 AGAAAGAAAATTGCACGGATGG 57.821 40.909 0.00 0.00 0.00 3.51
3328 5934 3.826157 AGAAAGAAAATTGCACGGATGGA 59.174 39.130 0.00 0.00 0.00 3.41
3329 5935 4.463891 AGAAAGAAAATTGCACGGATGGAT 59.536 37.500 0.00 0.00 0.00 3.41
3330 5936 3.788333 AGAAAATTGCACGGATGGATG 57.212 42.857 0.00 0.00 0.00 3.51
3331 5937 2.428171 AGAAAATTGCACGGATGGATGG 59.572 45.455 0.00 0.00 0.00 3.51
3332 5938 2.142356 AAATTGCACGGATGGATGGA 57.858 45.000 0.00 0.00 0.00 3.41
3333 5939 2.369983 AATTGCACGGATGGATGGAT 57.630 45.000 0.00 0.00 0.00 3.41
3334 5940 1.612676 ATTGCACGGATGGATGGATG 58.387 50.000 0.00 0.00 0.00 3.51
3417 6023 3.050275 AAGTTCAAGGGCGCGCTC 61.050 61.111 32.29 29.81 0.00 5.03
3561 6167 2.472059 ATACGTGGCCAATGCGCTG 61.472 57.895 7.24 0.00 38.85 5.18
3564 6170 2.650196 GTGGCCAATGCGCTGAAA 59.350 55.556 7.24 0.00 38.85 2.69
3585 6191 2.179517 GAGGAGGTCGACGTGCTG 59.820 66.667 32.40 0.00 32.66 4.41
3687 6293 4.681978 GACGTGCTGGAGGCCGTT 62.682 66.667 0.00 0.00 43.72 4.44
3903 6597 2.052237 GCGTTGGTGCTGAACGTG 60.052 61.111 14.12 0.00 46.25 4.49
4151 6846 3.832643 CGTACGTACGTTGGAACAAAA 57.167 42.857 33.95 1.29 42.09 2.44
4174 6869 9.877178 AAAATTTTATTTATGGACGCCATTGTA 57.123 25.926 15.07 5.49 42.23 2.41
4200 6895 0.435769 GCATCAACATTTGTGCACGC 59.564 50.000 13.13 1.02 37.51 5.34
4208 6903 2.709629 ATTTGTGCACGCACCGTTCG 62.710 55.000 18.91 0.00 45.63 3.95
4217 6912 1.937362 GCACCGTTCGTTTGCACAC 60.937 57.895 9.92 0.00 36.22 3.82
4219 6914 2.052590 CCGTTCGTTTGCACACCG 60.053 61.111 0.00 0.00 0.00 4.94
4220 6915 2.526993 CCGTTCGTTTGCACACCGA 61.527 57.895 0.00 0.00 0.00 4.69
4221 6916 1.083657 CGTTCGTTTGCACACCGAG 60.084 57.895 0.00 0.00 31.54 4.63
4222 6917 1.758319 CGTTCGTTTGCACACCGAGT 61.758 55.000 0.00 0.00 31.54 4.18
4229 6924 3.303461 CGTTTGCACACCGAGTAATTGAA 60.303 43.478 0.00 0.00 0.00 2.69
4231 6926 4.481930 TTGCACACCGAGTAATTGAAAG 57.518 40.909 0.00 0.00 0.00 2.62
4242 6937 4.855531 AGTAATTGAAAGGTTTCGTGTGC 58.144 39.130 0.00 0.00 40.01 4.57
4243 6938 3.791973 AATTGAAAGGTTTCGTGTGCA 57.208 38.095 0.00 0.00 40.01 4.57
4247 6942 1.529438 GAAAGGTTTCGTGTGCATCGA 59.471 47.619 11.76 11.76 35.50 3.59
4248 6943 1.808411 AAGGTTTCGTGTGCATCGAT 58.192 45.000 15.42 0.00 37.18 3.59
4249 6944 1.359848 AGGTTTCGTGTGCATCGATC 58.640 50.000 15.42 11.99 37.18 3.69
4250 6945 0.025001 GGTTTCGTGTGCATCGATCG 59.975 55.000 9.36 9.36 37.18 3.69
4251 6946 0.989164 GTTTCGTGTGCATCGATCGA 59.011 50.000 21.86 21.86 37.18 3.59
4539 7241 4.154347 CTGAGGGACGGGCAGCTC 62.154 72.222 0.00 0.00 0.00 4.09
4703 7405 2.202401 GTACGAGGACGCCACGAC 60.202 66.667 18.72 10.65 39.84 4.34
4758 7460 2.034879 CATGGAGTTTCTGCGGCGT 61.035 57.895 9.37 0.00 0.00 5.68
5068 7792 3.662759 AAGGGTTGAGTTGTCTCCAAA 57.337 42.857 0.00 0.00 39.75 3.28
5149 7873 6.153067 TCATTTATTGAAATTTGCCGACGTT 58.847 32.000 0.00 0.00 32.73 3.99
5160 7884 2.251893 TGCCGACGTTTTTGAAAACAC 58.748 42.857 16.79 10.24 46.52 3.32
5161 7885 1.250749 GCCGACGTTTTTGAAAACACG 59.749 47.619 16.79 18.17 46.52 4.49
5163 7887 2.507866 CGACGTTTTTGAAAACACGGT 58.492 42.857 20.52 8.49 46.52 4.83
5164 7888 2.909863 CGACGTTTTTGAAAACACGGTT 59.090 40.909 20.52 8.29 46.52 4.44
5166 8177 4.729564 CGACGTTTTTGAAAACACGGTTAT 59.270 37.500 20.52 7.57 46.52 1.89
5303 8315 6.428771 AGCATTTTCCAAATTCTGAACATTGG 59.571 34.615 21.90 21.90 42.92 3.16
5319 8332 6.420306 TGAACATTGGTTGAAATCACGATTTG 59.580 34.615 9.67 0.00 38.00 2.32
5327 8340 6.292811 GGTTGAAATCACGATTTGTTTGCAAT 60.293 34.615 9.67 0.00 40.77 3.56
5328 8341 6.841443 TGAAATCACGATTTGTTTGCAATT 57.159 29.167 9.67 0.00 40.77 2.32
5500 10825 4.370094 TCCCAAACCGGTACTAAAACAT 57.630 40.909 8.00 0.00 0.00 2.71
5591 10916 0.387622 CTGGTGACAATTTGCCGCAG 60.388 55.000 0.00 0.00 42.06 5.18
5676 11328 2.672996 AGCGGCGTTGCAAAGGAT 60.673 55.556 14.31 0.00 37.31 3.24
5708 11382 7.432252 CGATGGAGCCTTTAAAACAATATGTTC 59.568 37.037 0.00 0.00 40.14 3.18
5796 11474 6.638610 AGTTTGATCAATTTTTGTGTGTGGA 58.361 32.000 9.40 0.00 0.00 4.02
5802 11480 7.605691 TGATCAATTTTTGTGTGTGGAAAAACT 59.394 29.630 0.00 0.00 0.00 2.66
5804 11482 8.833231 TCAATTTTTGTGTGTGGAAAAACTTA 57.167 26.923 0.00 0.00 0.00 2.24
5844 11522 8.417273 AACTAGGTTTACAAGGCATAACAAAT 57.583 30.769 0.00 0.00 0.00 2.32
5888 11566 4.024556 CACAAGTGGCACTCTGTTTCTAAG 60.025 45.833 22.31 10.06 30.14 2.18
5889 11567 3.409026 AGTGGCACTCTGTTTCTAAGG 57.591 47.619 15.88 0.00 0.00 2.69
5891 11569 3.391296 AGTGGCACTCTGTTTCTAAGGAA 59.609 43.478 15.88 0.00 0.00 3.36
5892 11570 3.498777 GTGGCACTCTGTTTCTAAGGAAC 59.501 47.826 11.13 0.00 0.00 3.62
5893 11571 8.325171 AAGTGGCACTCTGTTTCTAAGGAACT 62.325 42.308 22.31 0.00 32.60 3.01
5894 11572 4.591498 TGGCACTCTGTTTCTAAGGAACTA 59.409 41.667 0.00 0.00 38.49 2.24
5895 11573 5.172205 GGCACTCTGTTTCTAAGGAACTAG 58.828 45.833 0.00 0.00 38.49 2.57
5896 11574 5.047235 GGCACTCTGTTTCTAAGGAACTAGA 60.047 44.000 0.00 0.00 38.49 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
91 92 9.177304 GCCGCTTTATTTATCATAAAAAGGTAC 57.823 33.333 0.00 0.00 0.00 3.34
92 93 9.127277 AGCCGCTTTATTTATCATAAAAAGGTA 57.873 29.630 0.00 0.00 0.00 3.08
93 94 8.007405 AGCCGCTTTATTTATCATAAAAAGGT 57.993 30.769 0.00 0.00 0.00 3.50
94 95 8.134895 TGAGCCGCTTTATTTATCATAAAAAGG 58.865 33.333 0.00 0.00 0.00 3.11
95 96 9.683069 ATGAGCCGCTTTATTTATCATAAAAAG 57.317 29.630 0.00 0.00 0.00 2.27
108 109 4.634443 ACTACGAAAAATGAGCCGCTTTAT 59.366 37.500 0.00 0.00 0.00 1.40
113 114 1.730064 TGACTACGAAAAATGAGCCGC 59.270 47.619 0.00 0.00 0.00 6.53
114 115 4.334443 CATTGACTACGAAAAATGAGCCG 58.666 43.478 0.00 0.00 32.86 5.52
115 116 4.098416 GCATTGACTACGAAAAATGAGCC 58.902 43.478 0.00 0.00 32.86 4.70
116 117 4.974591 AGCATTGACTACGAAAAATGAGC 58.025 39.130 0.00 0.00 32.86 4.26
168 179 2.775911 TCTCTGGTCCTTGAGCATTG 57.224 50.000 7.36 0.00 39.36 2.82
169 180 4.015084 CAATTCTCTGGTCCTTGAGCATT 58.985 43.478 7.36 6.21 39.36 3.56
207 221 3.657015 ACTGTCTAGATGCATCGGATG 57.343 47.619 20.67 13.63 0.00 3.51
209 223 4.183865 CAAAACTGTCTAGATGCATCGGA 58.816 43.478 20.67 18.72 0.00 4.55
271 731 2.357034 AAGCGTCGCGGTTCATGT 60.357 55.556 12.30 0.00 44.18 3.21
272 732 1.348538 TACAAGCGTCGCGGTTCATG 61.349 55.000 19.83 12.02 45.71 3.07
273 733 0.668096 TTACAAGCGTCGCGGTTCAT 60.668 50.000 19.83 7.77 45.71 2.57
274 734 0.668096 ATTACAAGCGTCGCGGTTCA 60.668 50.000 19.83 9.94 45.71 3.18
275 735 0.247145 CATTACAAGCGTCGCGGTTC 60.247 55.000 19.83 0.00 45.71 3.62
297 757 1.454653 GGTCACGCTTGTAAACGAGAC 59.545 52.381 8.70 8.70 45.26 3.36
300 760 1.210870 GTGGTCACGCTTGTAAACGA 58.789 50.000 0.00 0.00 0.00 3.85
301 761 3.721466 GTGGTCACGCTTGTAAACG 57.279 52.632 0.00 0.00 0.00 3.60
318 948 1.546476 GAGGAAGGATGTCACTGTCGT 59.454 52.381 0.00 0.00 0.00 4.34
345 983 5.318630 TGGTAATCCAAGTTTGTAGGGAAC 58.681 41.667 0.00 0.00 41.25 3.62
346 984 5.566469 CTGGTAATCCAAGTTTGTAGGGAA 58.434 41.667 0.00 0.00 43.81 3.97
347 985 4.566907 GCTGGTAATCCAAGTTTGTAGGGA 60.567 45.833 0.00 0.00 43.81 4.20
366 1004 1.168714 GTAGCAAAAGGACCAGCTGG 58.831 55.000 31.60 31.60 37.94 4.85
367 1005 0.798776 CGTAGCAAAAGGACCAGCTG 59.201 55.000 6.78 6.78 37.94 4.24
501 1142 5.416083 TCATGGTCTCGTTAATGAAATCGT 58.584 37.500 0.00 0.00 0.00 3.73
510 1151 3.953712 TCAGCTTCATGGTCTCGTTAA 57.046 42.857 0.00 0.00 0.00 2.01
527 1170 1.134280 GGGTGAGGTGACCATGATCAG 60.134 57.143 3.63 0.00 37.80 2.90
529 1172 1.207791 AGGGTGAGGTGACCATGATC 58.792 55.000 3.63 0.00 37.80 2.92
530 1173 3.424640 AGGGTGAGGTGACCATGAT 57.575 52.632 3.63 0.00 37.80 2.45
536 1179 1.968540 GCTTGCAGGGTGAGGTGAC 60.969 63.158 0.00 0.00 0.00 3.67
537 1180 2.149383 AGCTTGCAGGGTGAGGTGA 61.149 57.895 0.00 0.00 0.00 4.02
538 1181 1.970114 CAGCTTGCAGGGTGAGGTG 60.970 63.158 22.20 11.03 36.91 4.00
539 1182 2.149383 TCAGCTTGCAGGGTGAGGT 61.149 57.895 24.79 3.79 38.55 3.85
541 1184 0.535780 TTGTCAGCTTGCAGGGTGAG 60.536 55.000 28.38 4.34 43.05 3.51
542 1185 0.535780 CTTGTCAGCTTGCAGGGTGA 60.536 55.000 24.79 24.79 40.71 4.02
545 1188 2.960170 GCTTGTCAGCTTGCAGGG 59.040 61.111 0.00 0.00 43.51 4.45
553 1251 5.038284 AAGTACTACTTGGTGCTTGTCAGC 61.038 45.833 0.00 0.00 40.92 4.26
571 1269 3.125316 GCAGATAAGTGGTGCACAAGTAC 59.875 47.826 20.43 11.49 36.74 2.73
572 1270 3.007940 AGCAGATAAGTGGTGCACAAGTA 59.992 43.478 20.43 2.91 39.80 2.24
573 1271 2.154462 GCAGATAAGTGGTGCACAAGT 58.846 47.619 20.43 7.64 36.74 3.16
574 1272 2.430465 AGCAGATAAGTGGTGCACAAG 58.570 47.619 20.43 0.00 39.80 3.16
575 1273 2.566833 AGCAGATAAGTGGTGCACAA 57.433 45.000 20.43 3.78 39.80 3.33
628 1409 5.957842 TTGCCCACACTTCTTATTTAGTG 57.042 39.130 0.00 0.00 45.61 2.74
629 1410 5.652452 GGATTGCCCACACTTCTTATTTAGT 59.348 40.000 0.00 0.00 34.14 2.24
630 1411 5.652014 TGGATTGCCCACACTTCTTATTTAG 59.348 40.000 0.00 0.00 40.82 1.85
631 1412 5.575157 TGGATTGCCCACACTTCTTATTTA 58.425 37.500 0.00 0.00 40.82 1.40
632 1413 4.415596 TGGATTGCCCACACTTCTTATTT 58.584 39.130 0.00 0.00 40.82 1.40
759 1554 5.856455 GGACCGAGTTTCACAATACAAAATG 59.144 40.000 0.00 0.00 0.00 2.32
769 1564 1.275291 GATCAGGGACCGAGTTTCACA 59.725 52.381 0.00 0.00 0.00 3.58
770 1565 1.736032 CGATCAGGGACCGAGTTTCAC 60.736 57.143 0.00 0.00 0.00 3.18
779 1577 1.433879 CGAGACACGATCAGGGACC 59.566 63.158 0.00 0.00 45.77 4.46
783 1581 1.313091 TGACCCGAGACACGATCAGG 61.313 60.000 0.00 0.00 45.77 3.86
788 1586 2.343484 ATCTATGACCCGAGACACGA 57.657 50.000 0.00 0.00 45.77 4.35
789 1587 6.093633 TGAATATATCTATGACCCGAGACACG 59.906 42.308 0.00 0.00 42.18 4.49
790 1588 7.094334 TGTGAATATATCTATGACCCGAGACAC 60.094 40.741 0.00 0.00 0.00 3.67
791 1589 6.946009 TGTGAATATATCTATGACCCGAGACA 59.054 38.462 0.00 0.00 0.00 3.41
792 1590 7.392494 TGTGAATATATCTATGACCCGAGAC 57.608 40.000 0.00 0.00 0.00 3.36
793 1591 7.361799 CGTTGTGAATATATCTATGACCCGAGA 60.362 40.741 0.00 0.00 0.00 4.04
794 1592 6.747739 CGTTGTGAATATATCTATGACCCGAG 59.252 42.308 0.00 0.00 0.00 4.63
849 1647 0.178964 CTCCCTCCAACTGGCCAAAA 60.179 55.000 7.01 0.00 34.44 2.44
880 1678 2.097038 GTGTTCGCTGCGCTGAGAT 61.097 57.895 20.23 0.00 0.00 2.75
881 1679 2.734723 GTGTTCGCTGCGCTGAGA 60.735 61.111 18.65 17.69 0.00 3.27
882 1680 3.008240 CTGTGTTCGCTGCGCTGAG 62.008 63.158 18.65 15.38 0.00 3.35
883 1681 3.037833 CTGTGTTCGCTGCGCTGA 61.038 61.111 18.65 5.94 0.00 4.26
884 1682 3.008240 CTCTGTGTTCGCTGCGCTG 62.008 63.158 18.65 10.04 0.00 5.18
885 1683 2.736236 CTCTGTGTTCGCTGCGCT 60.736 61.111 18.65 0.00 0.00 5.92
888 1686 0.667487 TAGTGCTCTGTGTTCGCTGC 60.667 55.000 0.00 0.00 0.00 5.25
889 1687 1.063806 GTAGTGCTCTGTGTTCGCTG 58.936 55.000 0.00 0.00 0.00 5.18
890 1688 0.387367 CGTAGTGCTCTGTGTTCGCT 60.387 55.000 0.00 0.00 0.00 4.93
891 1689 1.344942 CCGTAGTGCTCTGTGTTCGC 61.345 60.000 0.00 0.00 0.00 4.70
892 1690 1.344942 GCCGTAGTGCTCTGTGTTCG 61.345 60.000 0.00 0.00 0.00 3.95
893 1691 0.319555 TGCCGTAGTGCTCTGTGTTC 60.320 55.000 0.00 0.00 0.00 3.18
938 1745 1.203622 AGGGGAGAGGATTCTTTGGGT 60.204 52.381 0.00 0.00 32.53 4.51
939 1746 1.601248 AGGGGAGAGGATTCTTTGGG 58.399 55.000 0.00 0.00 32.53 4.12
940 1747 2.357569 CCAAGGGGAGAGGATTCTTTGG 60.358 54.545 0.00 0.00 35.59 3.28
952 1780 3.787001 GGACGGAGCCAAGGGGAG 61.787 72.222 0.00 0.00 35.59 4.30
955 1783 4.410400 GTGGGACGGAGCCAAGGG 62.410 72.222 0.00 0.00 0.00 3.95
956 1784 3.636231 TGTGGGACGGAGCCAAGG 61.636 66.667 0.00 0.00 0.00 3.61
957 1785 2.358737 GTGTGGGACGGAGCCAAG 60.359 66.667 0.00 0.00 0.00 3.61
958 1786 2.448582 AAGTGTGGGACGGAGCCAA 61.449 57.895 0.00 0.00 0.00 4.52
959 1787 2.847234 AAGTGTGGGACGGAGCCA 60.847 61.111 0.00 0.00 0.00 4.75
960 1788 2.358737 CAAGTGTGGGACGGAGCC 60.359 66.667 0.00 0.00 0.00 4.70
961 1789 2.358737 CCAAGTGTGGGACGGAGC 60.359 66.667 0.00 0.00 41.77 4.70
962 1790 2.358737 GCCAAGTGTGGGACGGAG 60.359 66.667 0.00 0.00 46.09 4.63
963 1791 3.948719 GGCCAAGTGTGGGACGGA 61.949 66.667 0.00 0.00 46.09 4.69
966 1794 2.668550 GACGGCCAAGTGTGGGAC 60.669 66.667 2.24 0.00 46.09 4.46
967 1795 3.948719 GGACGGCCAAGTGTGGGA 61.949 66.667 0.00 0.00 46.09 4.37
968 1796 4.263572 TGGACGGCCAAGTGTGGG 62.264 66.667 8.12 0.00 46.09 4.61
1471 2326 7.003648 CACGAATGATTGCAACGTATAGTATG 58.996 38.462 11.11 0.00 38.38 2.39
1473 2328 6.267070 TCACGAATGATTGCAACGTATAGTA 58.733 36.000 11.11 0.00 38.38 1.82
1474 2329 5.106442 TCACGAATGATTGCAACGTATAGT 58.894 37.500 11.11 1.77 38.38 2.12
1475 2330 5.458779 TCTCACGAATGATTGCAACGTATAG 59.541 40.000 11.11 11.40 38.38 1.31
1476 2331 5.344884 TCTCACGAATGATTGCAACGTATA 58.655 37.500 11.11 3.49 38.38 1.47
1477 2332 4.180817 TCTCACGAATGATTGCAACGTAT 58.819 39.130 11.11 0.00 38.38 3.06
1576 2445 2.672996 CTGGCAAAGGGACCCACG 60.673 66.667 14.60 0.91 0.00 4.94
1671 2556 3.303132 GGTTCCTATTTCGTAAGCATGCG 60.303 47.826 13.01 0.00 35.85 4.73
1683 2568 3.329929 GACACAGGTCGGTTCCTATTT 57.670 47.619 0.00 0.00 35.87 1.40
1697 2582 1.554392 GCACGAGCTAGATGACACAG 58.446 55.000 0.00 0.00 37.91 3.66
1698 2583 3.721625 GCACGAGCTAGATGACACA 57.278 52.632 0.00 0.00 37.91 3.72
1776 2661 9.274065 GTCCTTGTCGTCATAACAAATAAAATC 57.726 33.333 0.00 0.00 36.27 2.17
1777 2662 9.010029 AGTCCTTGTCGTCATAACAAATAAAAT 57.990 29.630 0.00 0.00 36.27 1.82
1779 2664 7.972832 AGTCCTTGTCGTCATAACAAATAAA 57.027 32.000 0.00 0.00 36.27 1.40
1781 2666 7.223971 GCATAGTCCTTGTCGTCATAACAAATA 59.776 37.037 0.00 0.00 36.27 1.40
1782 2667 6.037172 GCATAGTCCTTGTCGTCATAACAAAT 59.963 38.462 0.00 0.00 36.27 2.32
1783 2668 5.350365 GCATAGTCCTTGTCGTCATAACAAA 59.650 40.000 0.00 0.00 36.27 2.83
1838 2723 7.473027 TTCGCTGCAACTAAACCTATATTAC 57.527 36.000 0.00 0.00 0.00 1.89
1842 2731 6.676943 GCATTTTCGCTGCAACTAAACCTATA 60.677 38.462 0.00 0.00 39.46 1.31
1855 2744 1.712401 TCATTTGGCATTTTCGCTGC 58.288 45.000 0.00 0.00 38.93 5.25
1882 2771 5.859205 ATTGATTAAGGCCTCCATCAAAC 57.141 39.130 29.84 11.71 38.73 2.93
1883 2772 6.872585 AAATTGATTAAGGCCTCCATCAAA 57.127 33.333 29.84 19.35 38.73 2.69
1886 2775 9.317936 CTTTTTAAATTGATTAAGGCCTCCATC 57.682 33.333 5.23 11.58 35.03 3.51
1898 2787 9.337091 CCGTACATTCGTCTTTTTAAATTGATT 57.663 29.630 0.00 0.00 0.00 2.57
1900 2924 7.799447 CACCGTACATTCGTCTTTTTAAATTGA 59.201 33.333 0.00 0.00 0.00 2.57
1922 2946 5.823353 ACCTTAAAATTTACACACACACCG 58.177 37.500 0.00 0.00 0.00 4.94
1946 2972 8.289618 GTGTAGCTCTCATTTTAACACATTTCA 58.710 33.333 5.88 0.00 36.60 2.69
1972 2998 5.551760 AAGCCACATATTCGTCTTCTTTG 57.448 39.130 0.00 0.00 0.00 2.77
1979 3005 9.730420 AATATGTTAAAAAGCCACATATTCGTC 57.270 29.630 9.84 0.00 38.73 4.20
2005 3031 7.815840 TGTGGACTTTGAAGATGAACATTAA 57.184 32.000 0.00 0.00 0.00 1.40
2008 3034 6.906157 ATTGTGGACTTTGAAGATGAACAT 57.094 33.333 0.00 0.00 0.00 2.71
2011 3037 6.979817 CACAAATTGTGGACTTTGAAGATGAA 59.020 34.615 17.71 0.00 44.27 2.57
2028 3054 6.847289 GTGAGCAGCAATAAAAACACAAATTG 59.153 34.615 0.00 0.00 33.45 2.32
2034 3060 6.200665 TGAATTGTGAGCAGCAATAAAAACAC 59.799 34.615 0.00 0.00 35.73 3.32
2036 3062 6.768029 TGAATTGTGAGCAGCAATAAAAAC 57.232 33.333 0.00 0.00 35.73 2.43
2040 3066 4.523943 ACCTTGAATTGTGAGCAGCAATAA 59.476 37.500 0.00 0.00 35.73 1.40
2041 3067 4.081406 ACCTTGAATTGTGAGCAGCAATA 58.919 39.130 0.00 0.00 35.73 1.90
2042 3068 2.895404 ACCTTGAATTGTGAGCAGCAAT 59.105 40.909 0.00 0.00 38.09 3.56
2043 3069 2.309613 ACCTTGAATTGTGAGCAGCAA 58.690 42.857 0.00 0.00 0.00 3.91
2044 3070 1.985473 ACCTTGAATTGTGAGCAGCA 58.015 45.000 0.00 0.00 0.00 4.41
2045 3071 4.439289 GGAATACCTTGAATTGTGAGCAGC 60.439 45.833 0.00 0.00 0.00 5.25
2046 3072 4.701651 TGGAATACCTTGAATTGTGAGCAG 59.298 41.667 0.00 0.00 37.04 4.24
2048 3074 5.221126 GGATGGAATACCTTGAATTGTGAGC 60.221 44.000 0.00 0.00 37.04 4.26
2049 3075 6.039047 CAGGATGGAATACCTTGAATTGTGAG 59.961 42.308 0.00 0.00 33.91 3.51
2052 3078 6.078456 TCAGGATGGAATACCTTGAATTGT 57.922 37.500 0.00 0.00 36.16 2.71
2062 3088 8.519526 TGTGTGTAAAATTTCAGGATGGAATAC 58.480 33.333 0.00 0.00 45.58 1.89
2067 3093 7.754924 GTGTATGTGTGTAAAATTTCAGGATGG 59.245 37.037 0.00 0.00 36.16 3.51
2106 3132 8.891671 AAAACTCTGAAAAATGCACATGTATT 57.108 26.923 0.00 0.00 31.67 1.89
2154 3185 8.429237 TCCATGAAGGCCTTAATTTAGAAAAA 57.571 30.769 20.54 0.00 37.29 1.94
2155 3186 7.363793 GCTCCATGAAGGCCTTAATTTAGAAAA 60.364 37.037 20.54 0.00 37.29 2.29
2160 3191 5.129368 AGCTCCATGAAGGCCTTAATTTA 57.871 39.130 20.54 5.84 37.29 1.40
2161 3192 3.956848 GAGCTCCATGAAGGCCTTAATTT 59.043 43.478 20.54 0.00 37.29 1.82
2181 3212 1.726853 AGCGGATTTTGAAGACCGAG 58.273 50.000 0.00 0.00 46.94 4.63
2183 3214 2.603560 GAGTAGCGGATTTTGAAGACCG 59.396 50.000 0.00 0.00 46.74 4.79
2237 3268 9.933723 GCTTTGCCATCCTTATGAAATTATTAT 57.066 29.630 0.00 0.00 34.84 1.28
2238 3269 8.922237 TGCTTTGCCATCCTTATGAAATTATTA 58.078 29.630 0.00 0.00 34.84 0.98
2239 3270 7.794041 TGCTTTGCCATCCTTATGAAATTATT 58.206 30.769 0.00 0.00 34.84 1.40
2240 3271 7.364149 TGCTTTGCCATCCTTATGAAATTAT 57.636 32.000 0.00 0.00 34.84 1.28
2241 3272 6.788598 TGCTTTGCCATCCTTATGAAATTA 57.211 33.333 0.00 0.00 34.84 1.40
2244 3275 5.680594 AATGCTTTGCCATCCTTATGAAA 57.319 34.783 0.00 0.00 34.84 2.69
2245 3276 5.680594 AAATGCTTTGCCATCCTTATGAA 57.319 34.783 0.00 0.00 34.84 2.57
2246 3277 5.655974 TGTAAATGCTTTGCCATCCTTATGA 59.344 36.000 0.00 0.00 34.84 2.15
2247 3278 5.904941 TGTAAATGCTTTGCCATCCTTATG 58.095 37.500 0.00 0.00 0.00 1.90
2310 3341 6.695713 GGCCTAATTAAAGCCAAATTTAGTCG 59.304 38.462 17.43 0.00 46.34 4.18
2334 3365 1.417890 CCACTACAGCTAAGGGGATGG 59.582 57.143 10.47 0.46 40.22 3.51
2336 3367 1.009675 ACCCACTACAGCTAAGGGGAT 59.990 52.381 16.46 0.00 40.22 3.85
2354 3385 0.613777 AGGCCAAGCACTACTACACC 59.386 55.000 5.01 0.00 0.00 4.16
2383 3414 9.101655 AGCCAAAAACAGATATGAAAATATTGC 57.898 29.630 0.00 0.00 0.00 3.56
2396 3427 6.715280 TCTAAGATCTCAGCCAAAAACAGAT 58.285 36.000 0.00 0.00 0.00 2.90
2400 3431 7.383102 TGATTCTAAGATCTCAGCCAAAAAC 57.617 36.000 0.00 0.00 0.00 2.43
2401 3432 8.051535 AGATGATTCTAAGATCTCAGCCAAAAA 58.948 33.333 0.00 0.00 0.00 1.94
2429 3529 0.529833 ATCTGTCACTCGTGGAGCAG 59.470 55.000 0.00 4.53 32.04 4.24
2452 3552 9.045745 CCCCATAAGCCATAATATACCATTTTT 57.954 33.333 0.00 0.00 0.00 1.94
2457 3557 7.854560 AGATACCCCATAAGCCATAATATACCA 59.145 37.037 0.00 0.00 0.00 3.25
2458 3558 8.276453 AGATACCCCATAAGCCATAATATACC 57.724 38.462 0.00 0.00 0.00 2.73
2466 3566 6.275461 AGAGATAAGATACCCCATAAGCCAT 58.725 40.000 0.00 0.00 0.00 4.40
2468 3568 7.557724 GTTAGAGATAAGATACCCCATAAGCC 58.442 42.308 0.00 0.00 0.00 4.35
2489 3589 7.015877 GCTTCTCTTGATTTGTTTACCGTTAG 58.984 38.462 0.00 0.00 0.00 2.34
2494 3594 5.966742 AGGCTTCTCTTGATTTGTTTACC 57.033 39.130 0.00 0.00 0.00 2.85
2533 3633 4.224370 TCTTTCTTTTGCGATAGGGTAGGT 59.776 41.667 0.00 0.00 0.00 3.08
2622 3724 4.513406 TGGTTGTGAAGTACTCCCTTTT 57.487 40.909 0.00 0.00 0.00 2.27
2651 3753 9.143631 CCTTCTTTTTGCAAAATAGTAATCCAG 57.856 33.333 24.39 15.09 0.00 3.86
2669 3772 8.344831 GCTAAATCAAATGCAAAACCTTCTTTT 58.655 29.630 0.00 0.00 0.00 2.27
2677 3780 8.964420 TGTACTAGCTAAATCAAATGCAAAAC 57.036 30.769 0.00 0.00 0.00 2.43
2682 3785 9.956720 AATCATTGTACTAGCTAAATCAAATGC 57.043 29.630 0.00 0.00 0.00 3.56
2708 3811 9.726438 GCTAAGGAGAATGCCTAATTAATCTAA 57.274 33.333 0.00 0.00 37.26 2.10
2709 3812 9.105844 AGCTAAGGAGAATGCCTAATTAATCTA 57.894 33.333 0.00 0.00 37.26 1.98
2710 3813 7.983363 AGCTAAGGAGAATGCCTAATTAATCT 58.017 34.615 0.00 0.00 37.26 2.40
2711 3814 8.628630 AAGCTAAGGAGAATGCCTAATTAATC 57.371 34.615 0.00 0.00 37.26 1.75
2718 3821 4.227197 AGCTAAGCTAAGGAGAATGCCTA 58.773 43.478 0.00 0.00 36.99 3.93
2720 3823 3.181461 TGAGCTAAGCTAAGGAGAATGCC 60.181 47.826 0.00 0.00 39.88 4.40
2723 3826 3.389656 GGGTGAGCTAAGCTAAGGAGAAT 59.610 47.826 0.00 0.00 39.88 2.40
2743 3846 5.242393 AGAGATGAAAATGTTGTCAACTGGG 59.758 40.000 16.45 0.00 28.11 4.45
2746 3849 6.949352 ACAGAGATGAAAATGTTGTCAACT 57.051 33.333 16.45 0.00 30.37 3.16
2772 3875 1.626356 CCGGGGAGAATCTCAGCCAA 61.626 60.000 12.79 0.00 37.29 4.52
2773 3876 2.066393 CCGGGGAGAATCTCAGCCA 61.066 63.158 12.79 0.00 37.29 4.75
2774 3877 2.825264 CCGGGGAGAATCTCAGCC 59.175 66.667 12.79 4.85 37.29 4.85
2775 3878 2.110006 GCCGGGGAGAATCTCAGC 59.890 66.667 12.79 5.44 37.29 4.26
2776 3879 1.467678 ATCGCCGGGGAGAATCTCAG 61.468 60.000 26.38 2.89 37.29 3.35
2777 3880 0.178973 TATCGCCGGGGAGAATCTCA 60.179 55.000 26.38 0.59 37.29 3.27
2778 3881 0.528470 CTATCGCCGGGGAGAATCTC 59.472 60.000 26.38 0.71 33.73 2.75
2779 3882 0.178958 ACTATCGCCGGGGAGAATCT 60.179 55.000 26.38 11.89 33.73 2.40
2780 3883 0.244178 GACTATCGCCGGGGAGAATC 59.756 60.000 26.38 17.89 0.00 2.52
2781 3884 1.186267 GGACTATCGCCGGGGAGAAT 61.186 60.000 26.38 12.69 0.00 2.40
2782 3885 1.831286 GGACTATCGCCGGGGAGAA 60.831 63.158 26.38 15.68 0.00 2.87
2783 3886 2.203451 GGACTATCGCCGGGGAGA 60.203 66.667 26.38 21.13 0.00 3.71
2784 3887 0.538977 TAAGGACTATCGCCGGGGAG 60.539 60.000 26.38 16.06 0.00 4.30
2785 3888 0.538977 CTAAGGACTATCGCCGGGGA 60.539 60.000 24.79 24.79 0.00 4.81
2786 3889 0.538977 TCTAAGGACTATCGCCGGGG 60.539 60.000 13.31 13.31 0.00 5.73
2787 3890 0.882474 CTCTAAGGACTATCGCCGGG 59.118 60.000 2.18 0.00 0.00 5.73
2801 3904 3.449377 TGTATTGATCCGTGTGGCTCTAA 59.551 43.478 0.00 0.00 31.44 2.10
2807 3910 3.694072 ACCATTTGTATTGATCCGTGTGG 59.306 43.478 0.00 0.00 0.00 4.17
2810 3913 5.236478 GGAGTACCATTTGTATTGATCCGTG 59.764 44.000 0.00 0.00 35.97 4.94
2824 3944 3.306088 CGGATAAGATGCGGAGTACCATT 60.306 47.826 0.00 0.00 40.62 3.16
2835 3955 6.897259 TGTTTACTGTTACGGATAAGATGC 57.103 37.500 0.00 0.00 0.00 3.91
2842 3962 7.876068 TCTCTTGATTTGTTTACTGTTACGGAT 59.124 33.333 0.00 0.00 0.00 4.18
2851 3971 5.248380 AGGCCTCTCTTGATTTGTTTACT 57.752 39.130 0.00 0.00 0.00 2.24
2953 5218 7.619050 AGATCTATATGAATCATGGTGGTGAC 58.381 38.462 5.91 0.00 0.00 3.67
2954 5219 7.803487 AGATCTATATGAATCATGGTGGTGA 57.197 36.000 5.91 0.00 0.00 4.02
2973 5238 9.709495 GTGAGAGAAAATGATTAGCATAGATCT 57.291 33.333 0.00 0.00 35.78 2.75
2975 5240 8.658619 AGGTGAGAGAAAATGATTAGCATAGAT 58.341 33.333 0.00 0.00 35.78 1.98
2979 5244 6.320672 CCAAGGTGAGAGAAAATGATTAGCAT 59.679 38.462 0.00 0.00 39.43 3.79
2999 5264 2.002586 CGCATGAACTACTCACCAAGG 58.997 52.381 0.00 0.00 36.69 3.61
3000 5265 2.413112 CACGCATGAACTACTCACCAAG 59.587 50.000 0.00 0.00 36.69 3.61
3003 5268 2.080286 ACACGCATGAACTACTCACC 57.920 50.000 0.00 0.00 36.69 4.02
3019 5284 0.158928 CGTTCGCTCTCGTTCAACAC 59.841 55.000 0.00 0.00 36.96 3.32
3025 5290 3.097728 CGCACGTTCGCTCTCGTT 61.098 61.111 0.00 0.00 38.23 3.85
3030 5295 3.028019 TGACACGCACGTTCGCTC 61.028 61.111 7.70 3.19 0.00 5.03
3094 5369 2.675844 TCAATGGAATTAACCACGAGCG 59.324 45.455 0.00 0.00 43.03 5.03
3164 5439 4.732784 TGGCTAATTTTGTGCGAAGAATC 58.267 39.130 0.00 0.00 0.00 2.52
3207 5482 5.767665 TGTACAATTGGCAATGAGTTACACT 59.232 36.000 14.47 0.00 0.00 3.55
3208 5483 6.007936 TGTACAATTGGCAATGAGTTACAC 57.992 37.500 14.47 10.95 0.00 2.90
3224 5499 4.870123 TGCATTGGCTTTCTTGTACAAT 57.130 36.364 9.13 0.00 41.91 2.71
3242 5517 0.541063 GCCATCCATCCATCCATGCA 60.541 55.000 0.00 0.00 0.00 3.96
3252 5527 6.830873 AATAATTTCAGCTAGCCATCCATC 57.169 37.500 12.13 0.00 0.00 3.51
3257 5532 6.206180 ACCCTAATAATTTCAGCTAGCCAT 57.794 37.500 12.13 0.00 0.00 4.40
3259 5534 6.546034 TCAAACCCTAATAATTTCAGCTAGCC 59.454 38.462 12.13 0.00 0.00 3.93
3262 5537 7.444183 CCGATCAAACCCTAATAATTTCAGCTA 59.556 37.037 0.00 0.00 0.00 3.32
3263 5538 6.263168 CCGATCAAACCCTAATAATTTCAGCT 59.737 38.462 0.00 0.00 0.00 4.24
3264 5539 6.438763 CCGATCAAACCCTAATAATTTCAGC 58.561 40.000 0.00 0.00 0.00 4.26
3265 5540 6.438763 GCCGATCAAACCCTAATAATTTCAG 58.561 40.000 0.00 0.00 0.00 3.02
3266 5541 5.300792 GGCCGATCAAACCCTAATAATTTCA 59.699 40.000 0.00 0.00 0.00 2.69
3267 5542 5.300792 TGGCCGATCAAACCCTAATAATTTC 59.699 40.000 0.00 0.00 0.00 2.17
3268 5543 5.205056 TGGCCGATCAAACCCTAATAATTT 58.795 37.500 0.00 0.00 0.00 1.82
3269 5544 4.798882 TGGCCGATCAAACCCTAATAATT 58.201 39.130 0.00 0.00 0.00 1.40
3270 5545 4.447138 TGGCCGATCAAACCCTAATAAT 57.553 40.909 0.00 0.00 0.00 1.28
3271 5546 3.935818 TGGCCGATCAAACCCTAATAA 57.064 42.857 0.00 0.00 0.00 1.40
3272 5547 3.137544 ACATGGCCGATCAAACCCTAATA 59.862 43.478 0.00 0.00 0.00 0.98
3273 5548 2.091885 ACATGGCCGATCAAACCCTAAT 60.092 45.455 0.00 0.00 0.00 1.73
3274 5549 1.283613 ACATGGCCGATCAAACCCTAA 59.716 47.619 0.00 0.00 0.00 2.69
3275 5550 0.916086 ACATGGCCGATCAAACCCTA 59.084 50.000 0.00 0.00 0.00 3.53
3276 5551 0.039618 AACATGGCCGATCAAACCCT 59.960 50.000 0.00 0.00 0.00 4.34
3277 5552 1.676006 CTAACATGGCCGATCAAACCC 59.324 52.381 0.00 0.00 0.00 4.11
3278 5553 2.354821 GTCTAACATGGCCGATCAAACC 59.645 50.000 0.00 0.00 0.00 3.27
3279 5554 3.270877 AGTCTAACATGGCCGATCAAAC 58.729 45.455 0.00 0.00 0.00 2.93
3285 5891 2.730382 TGTCTAGTCTAACATGGCCGA 58.270 47.619 0.00 0.00 0.00 5.54
3294 5900 9.337396 TGCAATTTTCTTTCTTGTCTAGTCTAA 57.663 29.630 0.00 0.00 0.00 2.10
3297 5903 6.575201 CGTGCAATTTTCTTTCTTGTCTAGTC 59.425 38.462 0.00 0.00 0.00 2.59
3298 5904 6.430451 CGTGCAATTTTCTTTCTTGTCTAGT 58.570 36.000 0.00 0.00 0.00 2.57
3299 5905 5.853282 CCGTGCAATTTTCTTTCTTGTCTAG 59.147 40.000 0.00 0.00 0.00 2.43
3300 5906 5.529430 TCCGTGCAATTTTCTTTCTTGTCTA 59.471 36.000 0.00 0.00 0.00 2.59
3301 5907 4.338118 TCCGTGCAATTTTCTTTCTTGTCT 59.662 37.500 0.00 0.00 0.00 3.41
3302 5908 4.606961 TCCGTGCAATTTTCTTTCTTGTC 58.393 39.130 0.00 0.00 0.00 3.18
3303 5909 4.647424 TCCGTGCAATTTTCTTTCTTGT 57.353 36.364 0.00 0.00 0.00 3.16
3305 5911 4.280677 TCCATCCGTGCAATTTTCTTTCTT 59.719 37.500 0.00 0.00 0.00 2.52
3307 5913 4.173036 TCCATCCGTGCAATTTTCTTTC 57.827 40.909 0.00 0.00 0.00 2.62
3308 5914 4.497300 CATCCATCCGTGCAATTTTCTTT 58.503 39.130 0.00 0.00 0.00 2.52
3309 5915 3.119029 CCATCCATCCGTGCAATTTTCTT 60.119 43.478 0.00 0.00 0.00 2.52
3310 5916 2.428171 CCATCCATCCGTGCAATTTTCT 59.572 45.455 0.00 0.00 0.00 2.52
3311 5917 2.426738 TCCATCCATCCGTGCAATTTTC 59.573 45.455 0.00 0.00 0.00 2.29
3312 5918 2.455557 TCCATCCATCCGTGCAATTTT 58.544 42.857 0.00 0.00 0.00 1.82
3313 5919 2.142356 TCCATCCATCCGTGCAATTT 57.858 45.000 0.00 0.00 0.00 1.82
3314 5920 1.958579 CATCCATCCATCCGTGCAATT 59.041 47.619 0.00 0.00 0.00 2.32
3315 5921 1.612676 CATCCATCCATCCGTGCAAT 58.387 50.000 0.00 0.00 0.00 3.56
3316 5922 0.466007 CCATCCATCCATCCGTGCAA 60.466 55.000 0.00 0.00 0.00 4.08
3317 5923 1.148949 CCATCCATCCATCCGTGCA 59.851 57.895 0.00 0.00 0.00 4.57
3318 5924 0.037303 ATCCATCCATCCATCCGTGC 59.963 55.000 0.00 0.00 0.00 5.34
3319 5925 1.612462 CCATCCATCCATCCATCCGTG 60.612 57.143 0.00 0.00 0.00 4.94
3320 5926 0.694771 CCATCCATCCATCCATCCGT 59.305 55.000 0.00 0.00 0.00 4.69
3321 5927 0.694771 ACCATCCATCCATCCATCCG 59.305 55.000 0.00 0.00 0.00 4.18
3322 5928 2.522185 CAACCATCCATCCATCCATCC 58.478 52.381 0.00 0.00 0.00 3.51
3323 5929 2.522185 CCAACCATCCATCCATCCATC 58.478 52.381 0.00 0.00 0.00 3.51
3324 5930 1.481802 GCCAACCATCCATCCATCCAT 60.482 52.381 0.00 0.00 0.00 3.41
3325 5931 0.106066 GCCAACCATCCATCCATCCA 60.106 55.000 0.00 0.00 0.00 3.41
3326 5932 0.186873 AGCCAACCATCCATCCATCC 59.813 55.000 0.00 0.00 0.00 3.51
3327 5933 1.133699 TCAGCCAACCATCCATCCATC 60.134 52.381 0.00 0.00 0.00 3.51
3328 5934 0.928505 TCAGCCAACCATCCATCCAT 59.071 50.000 0.00 0.00 0.00 3.41
3329 5935 0.703488 TTCAGCCAACCATCCATCCA 59.297 50.000 0.00 0.00 0.00 3.41
3330 5936 1.478105 GTTTCAGCCAACCATCCATCC 59.522 52.381 0.00 0.00 0.00 3.51
3331 5937 2.450476 AGTTTCAGCCAACCATCCATC 58.550 47.619 0.00 0.00 0.00 3.51
3332 5938 2.610438 AGTTTCAGCCAACCATCCAT 57.390 45.000 0.00 0.00 0.00 3.41
3333 5939 3.245229 ACATAGTTTCAGCCAACCATCCA 60.245 43.478 0.00 0.00 0.00 3.41
3334 5940 3.129287 CACATAGTTTCAGCCAACCATCC 59.871 47.826 0.00 0.00 0.00 3.51
3561 6167 0.179194 CGTCGACCTCCTCGTCTTTC 60.179 60.000 10.58 0.00 43.45 2.62
3564 6170 2.033755 CACGTCGACCTCCTCGTCT 61.034 63.158 10.58 0.00 43.45 4.18
3883 6491 2.639286 GTTCAGCACCAACGCCAG 59.361 61.111 0.00 0.00 0.00 4.85
3903 6597 0.393820 TCGACTTGTACCCACCCAAC 59.606 55.000 0.00 0.00 0.00 3.77
3931 6625 2.754375 GCCGAGGAACCCCTTCAA 59.246 61.111 0.00 0.00 44.53 2.69
4151 6846 8.458573 TCTACAATGGCGTCCATAAATAAAAT 57.541 30.769 11.07 0.00 44.40 1.82
4165 6860 2.809696 TGATGCATGATCTACAATGGCG 59.190 45.455 2.46 0.00 31.55 5.69
4174 6869 4.081917 TGCACAAATGTTGATGCATGATCT 60.082 37.500 2.46 0.00 40.28 2.75
4200 6895 1.298041 GGTGTGCAAACGAACGGTG 60.298 57.895 0.00 0.00 0.00 4.94
4208 6903 3.889196 TCAATTACTCGGTGTGCAAAC 57.111 42.857 0.00 0.00 0.00 2.93
4217 6912 4.212636 ACACGAAACCTTTCAATTACTCGG 59.787 41.667 0.00 0.00 37.01 4.63
4219 6914 4.909880 GCACACGAAACCTTTCAATTACTC 59.090 41.667 0.00 0.00 37.01 2.59
4220 6915 4.336993 TGCACACGAAACCTTTCAATTACT 59.663 37.500 0.00 0.00 37.01 2.24
4221 6916 4.602995 TGCACACGAAACCTTTCAATTAC 58.397 39.130 0.00 0.00 37.01 1.89
4222 6917 4.902443 TGCACACGAAACCTTTCAATTA 57.098 36.364 0.00 0.00 37.01 1.40
4229 6924 1.732259 GATCGATGCACACGAAACCTT 59.268 47.619 18.85 5.20 42.80 3.50
4231 6926 0.025001 CGATCGATGCACACGAAACC 59.975 55.000 18.85 11.51 42.80 3.27
4242 6937 4.741342 TCCATCTGATTGATCGATCGATG 58.259 43.478 33.86 28.65 37.13 3.84
4243 6938 4.677514 GCTCCATCTGATTGATCGATCGAT 60.678 45.833 29.76 29.76 37.59 3.59
4247 6942 2.636403 TGGCTCCATCTGATTGATCGAT 59.364 45.455 0.00 0.00 32.05 3.59
4248 6943 2.036862 CTGGCTCCATCTGATTGATCGA 59.963 50.000 0.00 0.00 32.05 3.59
4249 6944 2.414806 CTGGCTCCATCTGATTGATCG 58.585 52.381 0.00 0.00 32.05 3.69
4250 6945 2.152830 GCTGGCTCCATCTGATTGATC 58.847 52.381 0.00 0.00 32.05 2.92
4251 6946 1.775459 AGCTGGCTCCATCTGATTGAT 59.225 47.619 0.00 0.00 35.40 2.57
4338 7033 2.420022 GCCGAAGTAGTAGTTCACCGTA 59.580 50.000 16.22 0.00 0.00 4.02
4383 7078 1.210155 GTTGTTGAGCACGATGCCC 59.790 57.895 6.39 0.00 46.52 5.36
4467 7169 3.124921 CCCGGCGCGATGAAGTTT 61.125 61.111 12.10 0.00 0.00 2.66
4491 7193 2.136878 CGTCATGGAGGAGAGGGGG 61.137 68.421 0.00 0.00 0.00 5.40
4494 7196 2.818132 GGCGTCATGGAGGAGAGG 59.182 66.667 0.00 0.00 0.00 3.69
4557 7259 4.740822 ATGTTGGTGCCCCCGCTC 62.741 66.667 0.00 0.00 35.15 5.03
4921 7627 6.925718 ACGTCTGAACAATATGTCCATCATAG 59.074 38.462 0.00 0.00 41.55 2.23
5266 8278 6.917217 TTGGAAAATGCTCGAACAATTTTT 57.083 29.167 3.54 2.16 0.00 1.94
5276 8288 5.221880 TGTTCAGAATTTGGAAAATGCTCG 58.778 37.500 0.00 0.00 0.00 5.03
5303 8315 5.633996 TGCAAACAAATCGTGATTTCAAC 57.366 34.783 4.89 0.00 38.84 3.18
5591 10916 3.482110 CGCAAACCTTATTTATCGCTTGC 59.518 43.478 0.00 0.00 35.67 4.01
5605 11256 0.392998 CCAGTAGATGCCGCAAACCT 60.393 55.000 0.00 0.00 0.00 3.50
5835 11513 6.345298 GGTTTCCCATTACCCATTTGTTATG 58.655 40.000 0.00 0.00 0.00 1.90
5864 11542 1.334869 GAAACAGAGTGCCACTTGTGG 59.665 52.381 14.94 14.94 0.00 4.17
5877 11555 9.901172 AAACTTTTCTAGTTCCTTAGAAACAGA 57.099 29.630 7.51 0.00 46.34 3.41
5892 11570 9.394477 GCACATAACTTGGTTAAACTTTTCTAG 57.606 33.333 0.00 0.00 31.56 2.43
5893 11571 8.354426 GGCACATAACTTGGTTAAACTTTTCTA 58.646 33.333 0.00 0.00 31.56 2.10
5894 11572 7.069455 AGGCACATAACTTGGTTAAACTTTTCT 59.931 33.333 0.00 0.00 31.56 2.52
5895 11573 7.207383 AGGCACATAACTTGGTTAAACTTTTC 58.793 34.615 0.00 0.00 31.56 2.29
5896 11574 7.069455 AGAGGCACATAACTTGGTTAAACTTTT 59.931 33.333 0.00 0.00 31.56 2.27
5905 11583 3.832527 ACAAAGAGGCACATAACTTGGT 58.167 40.909 0.00 0.00 0.00 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.